94 results on '"Dennis E. Desjardin"'
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2. Eoscyphella luciurceolata gen. and sp. nov. (Agaricomycetes) Shed Light on Cyphellopsidaceae with a New Lineage of Bioluminescent Fungi
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Alexandre G. S. Silva-Filho, Andgelo Mombert, Cristiano C. Nascimento, Bianca B. Nóbrega, Douglas M. M. Soares, Ana G. S. Martins, Adão H. R. Domingos, Isaias Santos, Olavo H. P. Della-Torre, Brian A. Perry, Dennis E. Desjardin, Cassius V. Stevani, and Nelson Menolli
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Agaricales ,Basidiomycota ,Brazilian biodiversity ,bioluminescence ,Niaceae ,Biology (General) ,QH301-705.5 - Abstract
During nocturnal field expeditions in the Brazilian Atlantic Rainforest, an unexpected bioluminescent fungus with reduced form was found. Based on morphological data, the taxon was first identified as belonging to the cyphelloid genus Maireina, but in our phylogenetic analyses, Maireina was recovered and confirmed as a paraphyletic group related to genera Merismodes and Cyphellopsis. Maireina filipendula, Ma. monacha, and Ma. subsphaerospora are herein transferred to Merismodes. Based upon morphological and molecular characters, the bioluminescent cyphelloid taxon is described as the new genus Eoscyphella, characterized by a vasiform to urceolate basidiomata, subglobose to broadly ellipsoid basidiospores, being pigmented, weakly to densely encrusted external hyphae, regularly bi-spored basidia, unclamped hyphae, and an absence of both conspicuous long external hairs and hymenial cystidia. Phylogenetic analyses based on ITS rDNA and LSU rDNA support the proposal of the new genus and confirm its position in Cyphellopsidaceae. Eoscyphella luciurceolata represents a new lineage of bioluminescent basidiomycetes with reduced forms.
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- 2023
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3. Fungi of São Tomé and Príncipe Islands: Basidiomycete Mushrooms and Allies
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Dennis E. Desjardin and Brian A. Perry
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Mushrooms and allies belong to the Agaricomycetes lineage of Basidiomycota. A total of 260 species, belonging in 109 genera, 51 families and 13 orders have been reported from São Tomé and Príncipe between 1851 and 2020, of which 66 were described as new species. They range in body forms from agarics and boletes to polyporoid, clavarioid, coralloid, thelephoroid, stereoid, corticioid, hydnoid, cantherelloid, gasteroid, and jelly fungi. The vast majority are saprotrophs, a small number are plant pathogens, and a rare few may be ectomycorrhizal. Sixty species, 23%, can be classified putative endemics. The current state of knowledge of the Agaricomycetes from the nation is based on fewer than ten expeditions in the past 170 years and represents only a snapshot of the actual diversity that is likely present.
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- 2022
4. The genus Marasmius (Basidiomycota, Agaricales, Marasmiaceae) from Republic of São Tomé and Príncipe, West Africa
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Dennis E. Desjardin, Jackie E. Shay, Brian A. Perry, and Chris L. Grace
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Marasmiaceae ,biology ,Phylogenetic tree ,Genus ,Zoology ,Agaricales ,Key (lock) ,Taxonomy (biology) ,Plant Science ,Internal transcribed spacer ,biology.organism_classification ,Marasmius ,Ecology, Evolution, Behavior and Systematics - Abstract
This treatise serves as a preliminary monograph and phylogenetic treatment of Marasmius from the African island nation of São Tomé and Príncipe (ST&P), based on data generated from 30 specimens collected in 2008. Twenty-one species are described, seven of which represent species new to science (Marasmius albisubiculosus, M. diversus, M. elaeocephaliformis, M. laranja, M. leptocephalus, M. paratrichotus, M. segregatus), and all represent new distribution records for ST&P. Species are delimited based on comprehensive morphological characters and DNA sequence data. Prior to the collection of these specimens, only one Marasmius species had been documented from these islands. Phylogenetic hypotheses generated from analyses of DNA sequences of the Internal Transcribed Spacer regions (ITS1+5.8S+ITS2) are proposed to explore the evolutionary relationships amongst ST&P Marasmius and global Marasmius diversity. A dichotomous key to aid in identification, illustrations of pertinent micromorphological features, colour photographs of basidiomata, comprehensive descriptions and commentaries are provided.
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- 2019
5. New species and records of bioluminescent Mycena from Mexico
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Brian A. Perry, Virginia Ramírez-Cruz, Alan Rockefeller, Florencia Ramírez-Guillén, Alma R. Villalobos-Arámbula, Alonso Cortés-Pérez, and Dennis E. Desjardin
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0106 biological sciences ,Luminescence ,Physiology ,Biodiversity ,Identification key ,Biology ,DNA, Ribosomal ,010603 evolutionary biology ,01 natural sciences ,Mycena ,030308 mycology & parasitology ,03 medical and health sciences ,DNA, Ribosomal Spacer ,Botany ,Genetics ,Cluster Analysis ,Bioluminescence ,Internal transcribed spacer ,DNA, Fungal ,Mexico ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,0303 health sciences ,Sequence Analysis, DNA ,Cell Biology ,General Medicine ,biology.organism_classification ,RNA, Ribosomal, 5.8S ,Taxonomy (biology) ,Agaricales - Abstract
Seven species of bioluminescent fungi are recorded from the cloud forests in Mexico. Six represent new species belonging to the genus Mycena, whereas Mycena globulispora is a new distribution record for the country. Descriptions, illustrations, photographs, and an identification key to bioluminescent fungi species from Mexico are provided. Sequences of nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) region were generated for barcoding purposes and comparisons with similar species.
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- 2019
6. Considerations and consequences of allowing DNA sequence data as types of fungal taxa
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Harry Andersson, Annemieke Verbeken, László Nagy, E. S. Popov, L. B. Kalinina, Robert W. Barreto, Philippe Clerc, Alice Cruz Lima da Gerlach, Martin Grube, Xingzhong Liu, Jan Holec, Leticia Pacheco, Ursula Eberhardt, Blanca Imelda Arguello Sosa, Sigvard Svensson, Dania García Sánchez, Dmitry Ageev, Julia Pawłowska, Dennis E. Desjardin, Sara R. Noumeur, James C. Lendemer, Martin Kukwa, Viktor Papp, Isabel Salcedo, Maria Martha Dios, Richard W. Kerrigan, Reinhard Agerer, Jean-Michel Bellanger, Curtis R. Björk, Uwe Braun, François Valade, Víctor J. Rico, Ondřej Koukol, Ingvar Kärnefelt, Barbara Schulz, Attila Koszka, Gro Gulden, E. F. Malysheva, P. Brandon Matheny, Anton Shiryaev, Gerardo Mata, Mehdi Mehrabi, Taiga Kasuya, Tor Tønsberg, Ivana Kušan, Sergey Volobuev, Hans-Otto Baral, Esteri Ohenoja, Martin Kirchmair, Holger Thüs, Marian Jagers, Tuomo Niemelä, Begoña Aguirre-Hudson, J. Jennifer Luangsa-ard, Måns Svensson, Geir Mathiassen, Anna Rosling, Roy Watling, Meiriele da Silva, Eske De Crop, Ursula Peintner, Claudio Angelini, Mascha Hoffmeister, Vincent Demoulin, Miguel Ángel Ribes Ripoll, Paul Diederich, Takayuki Aoki, Nicolás Niveiro, Jiří Kout, Asunción Morte, Damien Ertz, Peter R. Johnston, Sergio P. Gorjón, Huzefa A. Raja, Machiel E. Noordeloos, Stellan Sunhede, László Lőkös, Cécile Gueidan, Gérald Gruhn, Bart Buyck, Roy E. Halling, Thomas Læssøe, Neven Matočec, Dan Mahoney, David Boertmann, Carlos G. Boluda, Vera Evenson, Ferenc Pál-Fám, Martin Westberg, Katriina Bendiksen, Jukka Vauras, Jacques Fournier, Martina Réblová, Gabriel Moreno, Yuri K. Novozhilov, Aída M. Vasco-Palacios, Leif Tibell, Deborah Jean Lodge, Miquel À. Pérez-De-Gregorio Capella, Rafael F. Castañeda-Ruiz, Olinto Liparini Pereira, Karl-Henrik Larsson, Michael Loizides, Edit Farkas, Mika Bendiksby, Tanja Böhning, Kadri Pärtel, Lucia Muggia, Brigitte Capoen, Raphaël Herve, Paul S. Dyer, Alberto Altés García, João Luís Baptista-Ferreira, Bella Grishkan, Paul Pirot, Karl Soop, Anna Bérešová-Guttová, Donald H. Pfister, A. Martyn Ainsworth, Uwe Lindemann, Alain Favre, Elisandro Ricardo Drechsler-Santos, André De Kesel, Mónica A.G. Otálora, Klaus Høiland, Ellen Larsson, Jens H. Petersen, Meike Piepenbring, Florent Boittin, James K. Mitchell, Zdeněk Palice, Franck Richard, Masoomeh Ghobad-Nejhad, Nils Hallenberg, Henry J. Beker, Gilles Corriol, Ronald H. Petersen, Melissa Palacio, Ana Esperanza Franco Molano, Mikael Jeppson, Gerardo Lucio Robledo, Egil Bendiksen, V. M. Kotkova, Håkon Holien, Marjo Dam, Pier Luigi Nimis, Yasmina Marin-Felix, Fernando Esteve-Raventós, Ave Suija, André Aptroot, Frank Dämmrich, Mitko Karadelev, Karen W. Hughes, Gladstone Alves da Silva, Emanuele Campo, Reinhard Berndt, Alona Yu. Biketova, Anders Nordin, Juan Manuel Velasco Santos, Josef Hafellner, Marco Thines, Bálint Dima, Grit Walther, Rodham E. Tulloss, Michael J. Richardson, Thomas W. Kuyper, Vladimír Kunca, Ann Bell, Adrien Taudière, Marc Stadler, Tania Raymundo, Per Vetlesen, Guillermo Muñoz González, Seppo Huhtinen, Irmgard Greilhuber, Øyvind Weholt, María Prieto Álvaro, Teun Boekhout, Dagmar Triebel, Mikhail P. Zhurbenko, Elena Voronina, Zdenko Tkalčec, Christian Lechat, Krzysztof Świerkosz, Joaquina María García-Martín, Johannes Z. Groenewald, Rubén Martínez-Gil, Pierre-Arthur Moreau, Evi Weber, Jan Borovička, Anna G. Fedosova, A Fraiture, Ewald Langer, Olga Morozova, Günter Saar, Carlos Lado, Vicent Calatayud, Juan Carlos Zamora, Ibai Olariaga, Francesco Bellù, Paolo Franchi, AnnaElise Jansen, Simón Fos, Matthias Lutz, Veera Tuovinen, István Nagy, Boris Assyov, J. Vladimir Sandoval-Sierra, Andrei Tsurykau, Alfredo Vizzini, Ivona Kautmanová, Mario Filippa, Beatrice Senn-Irlet, Sigisfredo Garnica, Josiane Santana Monteiro, Luis A. Parra, Svengunnar Ryman, Alan M. Fryday, Stip Helleman, Pedro W. Crous, Ruben De Lange, Alexander Ordynets, Giuliana Furci, Guilhermina Marques, Håkan Lindström, Joost A. Stalpers, Luis Quijada, Carlos A. Salvador Montoya, Marina Temina, Ruvishika S. Jayawardena, Miguel Ulloa Sosa, Joseph F. Ammirati, Heikki Kotiranta, Andreas Frisch, Martin Kříž, Teuvo Ahti, Tommy Knutsson, Tatyana Yu. Svetasheva, Luis Rubio Casas, Maria Alice Neves, Arne Thell, Soili Stenroos, Lajos Benedek, Sten Svantesson, Tine Grebenc, Patrícia Oliveira Fiuza, Tor Erik Brandrud, Flávia Rodrigues Barbosa, Annarosa Bernicchia, T. K. Arun Kumar, Massimo Candusso, Menno W. Boomsluiter, Wolfgang von Brackel, Petr Zehnálek, Hana Ševčíková, Toby Spribille, Vit Hubka, Trond Schumacher, Olivier Raspé, Tatiana Baptista Gibertoni, Esteve Llop, Åsa Kruys, Christoffer Bugge Harder, Klaus Siepe, Arne Aronsen, Andrew N. Miller, Laura Noemí Levin, Edgardo Albertó, Israel Pérez-Vargas, Hermann Voglmayr, Genevieve Gates, Bárbara De Madrignac Bonzi, Pradeep K. Divakar, Franz Berger, Natalia A. Ramírez, Per M. Jørgensen, Roland Moberg, Guy Marson, Gábor M. Kovács, Gérard Trichies, Sergio M. Salcedo Martínez, Juan Pablo Esquivel, Lynn Delgat, Juan de Dios Reyes García, Heidi Tamm, Vera Malysheva, Jan-Olof Tedebrand, Thomas Stjernegaard Jeppesen, Nico Dam, Régis Courtecuisse, Ireneia Melo, Pablo P. Daniëls, Péter Finy, Pamela Rodriguez-Flakus, Brian A. Perry, Brian Douglas, Ana M. Millanes Romero, Hans Josef Schroers, Pieter P. G. van den Boom, Slavomír Adamčík, Serena Lee, Marek Halama, Carlos Urcelay, Margarita Hernández-Restrepo, Philippe Callac, Oleg N. Shchepin, Vladimír Antonín, Gintaras Kantvilas, Else C. Vellinga, Ditte Bandini, Gernot Friebes, Roland Kirschner, Dániel G. Knapp, Boris Ivančević, Orlando Fabian Popoff, Clovis Douanla-Meli, Marcin Piątek, Alica Košuthová, Yury A. Rebriev, Helmut Mayrhofer, Alain Gardiennet, Karen Hansen, Kerry Knudsen, Otto Miettinen, Raquel Pino-Bodas, Shaun R. Pennycook, Beatriz Ortiz-Santana, Tatiana Bulyonkova, Jie Chen, Thomas Edison E. dela Cruz, Miroslav Kolařík, Witoon Purahong, Nicolas Van Vooren, Irwin M. Brodo, Esteban Benjamin Sir, Katerina Rusevska, Gerhard Rambold, Christian Printzen, Tim Baroni, Gary Laursen, Csaba Locsmándi, Javier Angel Etayo Salazar, Cristina Rodriguez-Caycedo, Irja Saar, Nadezhda V. Psurtseva, Takashi Shirouzu, Chayanard Phukhamsakda, Adam Flakus, Viacheslav Spirin, Sergi Santamaria, Matteo Garbelotto, Alan Orange, Mats Wedin, Andrew S. Methven, Huang Zhang, Guillaume Eyssartier, Michel Hairaud, Hatira Taskin, Luís Fernando Pascholati Gusmão, Carlos Manuel Pérez del Amo, Martin Bemmann, Ana Rosa Burgaz, Linas Kudzma, Didier Argaud, M. Catherine Aime, Alain Henriot, Walter M. Jaklitsch, Raúl Tena Lahoz, Violeta Atienza, Jorinde Nuytinck, Anna Kiyashko, Patinjareveettil Manimohan, József Geml, Cathy L. Cripps, Viktor Kučera, Francisco Kuhar, Kanad Das, Michael A. Castellano, Giovanni Consiglio, Ana Crespo, Armin Mešić, Leena Myllys, Einar Timdal, Ricardo Valenzuela Garza, Harold H. Burdsall, Enrico Bizio, Mohammad Sohrabi, Eugene Yurchenko, Linda Davies, Jacob Heilmann-Clausen, Patrice Lainé, Matteo Domenico Carbone, Aurelia Paz, Joaquim Carbó, Henning Knudsen, Thorsten Lumbsch, Caroline Hobart, Göran Thor, Bita Asgari, Matthias Lüderitz, Sanja Tibell, Ulf Arup, Geert Schmidt-Stohn, Urmas Kõljalg, Stefan Ekman, Regulo Carlos Llarena Hernandez, László Albert, Santiago Sánchez-Ramírez, Sergio Pérez-Ortega, Anna Ronikier, Isaac Garrido Benavent, Ricardo Galán Márquez, Westerdijk Fungal Biodiversity Institute, Westerdijk Fungal Biodiversity Institute - Yeast Research, Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology, Uppsala University, National Central University, Universidad Rey Juan Carlos [Madrid] (URJC), Avenida Padre Claret 7, Partenaires INRAE, Naturalis Biodiversity Center [Leiden], Evolutionary Biology Centre, Slovak Academy of Sciences (SAS), Finnish Museum of Natural History (LUOMUS), University of Helsinki, Purdue University, Royal Botanic Gardens, Hungarian Mycological Society, Universidad Nacional de San Martin (UNSAM), Universidad de Alcalá - University of Alcalá (UAH), SIGNATEC Ltd., Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), University of Washington [Seattle], Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Moravian Museum, National Agriculture and Food Research Organization (NARO), ABL Herbarium, Auteur indépendant, Instituto Tecnológico de Ciudad Victoria, Torødveien 54, Lund University [Lund], Agricultural Research,Education and Extension Organization (ARREO), Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences (BAS), Universitat Politècnica de València (UPV), Panoramastr 47, Universidade de Lisboa (ULISBOA), Blaihofstr. 42, State University of New York (SUNY), Universidade Federal de Vicosa (UFV), Royal Holloway, University of London, Meise Botanic Garden, 45 Gurney Road, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut de Recherche pour le Développement (IRD [France-Sud]), Naturmusem of Bolzano, Kleingemünderstraße 111, Norwegian University of Science and Technology (NTNU), Norwegian Institute for Nature Research (NINA), University of Oslo (UiO), Szent István University, University of Salzburg, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Via A. Guidotti 39, Institute of Biochemistry, Società Veneziana di Scienze Naturali, University of British Columbia (UBC), Westerdijk Fungal Biodiversity Insitute [Utrecht] (WI), Royal Netherlands Academy of Arts and Sciences (KNAW), Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam [Amsterdam] (UvA), Aarhus University [Aarhus], Christian-Albrechts University of Kiel, Conservatoire et Jardin Botaniques de Genève, T.v.Lohuizenstraat 34, Institute of Geology, Czech Academy of Sciences [Prague] (CAS), Martin-Luther-University Halle-Wittenberg, Canadian Museum of Nature, Russian Academy of Sciences [Moscow] (RAS), Fungal & Decay Diagnostics, Muséum national d'Histoire naturelle (MNHN), Universidad Complutense de Madrid = Complutense University of Madrid [Madrid] (UCM), Fundación CEAM, Unité de recherche Mycologie et Sécurité des Aliments (MycSA), Institut National de la Recherche Agronomique (INRA), Associazione Micologica Bresadola - Emilia Romagna, Via Ottone Primo 90, Via Don Luigi Sturzo, Instituto de Investigaciones Fundamentales en Agricultura Tropical 'Alejandro de Humboldt', United States Department of Agriculture (USDA), Mae Fah Luang University [Thaïlande] (MFU), Via C. Ronzani 61, Conservatoire Botanique National de Midi-Pyrénées (CBNMP), Université de Lille, Montana State University (MSU), Universidade Federal de Pernambuco [Recife] (UFPE), Hooischelf 13, Bavarian Natural History Collections, Botanical Survey of India, Centre for Environmental Policy, Imperial College London, Universiteit Gent = Ghent University [Belgium] (UGENT), Carlos Zamora, Juan, Svensson, Mån, Kirschner, Roland, Olariaga, Ibai, Ryman, Svengunnar, Alberto Parra, Lui, Geml, József, Rosling, Anna, Adamčík, Slavomír, Ahti, Teuvo, Catherine Aime, M., Martyn Ainsworth, A., Albert, László, Albertó, Edgardo, Altés García, Alberto, Ageev, Dmitry, Agerer, Reinhard, Aguirre-Hudson, Begoña, Ammirati, Joe, Andersson, Harry, Angelini, Claudio, Antonín, Vladimír, Aoki, Takayuki, Aptroot, André, Argaud, Didier, Imelda Arguello Sosa, Blanca, Aronsen, Arne, Arup, Ulf, Asgari, Bita, Assyov, Bori, Atienza, Violeta, Bandini, Ditte, Luís Baptista-Ferreira, João, Baral, Hans-Otto, Baroni, Tim, Weingart Barreto, Robert, Beker, Henry, Bell, Ann, Bellanger, Jean-Michel, Bellù, Francesco, Bemmann, Martin, Bendiksby, Mika, Bendiksen, Egil, Bendiksen, Katriina, Benedek, Lajo, Bérešová-Guttová, Anna, Berger, Franz, Berndt, Reinhard, Bernicchia, Annarosa, Biketova, Alona Yu., Bizio, Enrico, Bjork, Curti, Boekhout, Teun, Boertmann, David, Böhning, Tanja, Boittin, Florent, Boluda, Carlos G., Boomsluiter, Menno W., Borovička, Jan, Erik Brandrud, Tor, Braun, Uwe, Brodo, Irwin, Bulyonkova, Tatiana, H. Burdsall Jr., Harold, Buyck, Bart, Rosa Burgaz, Ana, Calatayud, Vicent, Callac, Philippe, Campo, Emanuele, Candusso, Massimo, Capoen, Brigitte, Carbó, Joaquim, Carbone, Matteo, Castañeda-Ruiz, Rafael F., Castellano, Michael A., Chen, Jie, Clerc, Philippe, Consiglio, Giovanni, Corriol, Gille, Courtecuisse, Régi, Crespo, Ana, Cripps, Cathy, Crous, Pedro W., Alves da Silva, Gladstone, da Silva, Meiriele, Dam, Marjo, Dam, Nico, Dämmrich, Frank, Das, Kanad, Davies, Linda, De Crop, Eske, De Kesel, Andre, De Lange, Ruben, De Madrignac Bonzi, Bárbara, dela Cruz, Thomas Edison E., Delgat, Lynn, Demoulin, Vincent, Desjardin, Dennis E., Diederich, Paul, Dima, Bálint, Martha Dios, Maria, Kumar Divakar, Pradeep, Douanla-Meli, Clovi, Douglas, Brian, Ricardo Drechsler-Santos, Elisandro, Dyer, Paul S., Eberhardt, Ursula, Ertz, Damien, Esteve-Raventós, Fernando, Angel Etayo Salazar, Javier, Evenson, Vera, Eyssartier, Guillaume, Farkas, Edit, Favre, Alain, Fedosova, Anna G., Filippa, Mario, Finy, Péter, Flakus, Adam, Fos, Simón, Fournier, Jacque, Fraiture, André, Franchi, Paolo, Esperanza Franco Molano, Ana, Friebes, Gernot, Frisch, Andrea, Fryday, Alan, Furci, Giuliana, Galán Márquez, Ricardo, Garbelotto, Matteo, María García-Martín, Joaquina, García Otálora, Mónica A., García Sánchez, Dania, Gardiennet, Alain, Garnica, Sigisfredo, Garrido Benavent, Isaac, Gates, Genevieve, da Cruz Lima Gerlach, Alice, Ghobad-Nejhad, Masoomeh, Gibertoni, Tatiana B., Grebenc, Tine, Greilhuber, Irmgard, Grishkan, Bella, Groenewald, Johannes Z., Grube, Martin, Gruhn, Gérald, Gueidan, Cécile, Gulden, Gro, FP Gusmão, Lui, Hafellner, Josef, Hairaud, Michel, Halama, Marek, Hallenberg, Nil, Halling, Roy E., Hansen, Karen, Bugge Harder, Christoffer, Heilmann-Clausen, Jacob, Helleman, Stip, Henriot, Alain, Hernandez-Restrepo, Margarita, Herve, Raphaël, Hobart, Caroline, Hoffmeister, Mascha, Høiland, Klau, Holec, Jan, Holien, Håkon, Hughes, Karen, Hubka, Vit, Huhtinen, Seppo, Ivančević, Bori, Jagers, Marian, Jaklitsch, Walter, Jansen, Annaelise, Jayawardena, Ruvishika S., Stjernegaard Jeppesen, Thoma, Jeppson, Mikael, Johnston, Peter, Magnus Jørgensen, Per, Kärnefelt, Ingvar, Kalinina, Liudmila B., Kantvilas, Gintara, Karadelev, Mitko, Kasuya, Taiga, Kautmanová, Ivona, Kerrigan, Richard W., Kirchmair, Martin, Kiyashko, Anna, Knapp, Dániel G., Knudsen, Henning, Knudsen, Kerry, Knutsson, Tommy, Kolařík, Miroslav, Kõljalg, Urma, Košuthová, Alica, Koszka, Attila, Kotiranta, Heikki, Kotkova, Vera, Koukol, Ondřej, Kout, Jiří, Kovács, Gábor M., Kříž, Martin, Kruys, Åsa, Kučera, Viktor, Kudzma, Lina, Kuhar, Francisco, Kukwa, Martin, Arun Kumar, T. K., Kunca, Vladimír, Kušan, Ivana, Kuyper, Thomas W., Lado, Carlo, Læssøe, Thoma, Lainé, Patrice, Langer, Ewald, Larsson, Ellen, Larsson, Karl-Henrik, Laursen, Gary, Lechat, Christian, Lee, Serena, Lendemer, James C., Levin, Laura, Lindemann, Uwe, Lindström, Håkan, Liu, Xingzhong, Carlos Llarena Hernandez, Regulo, Llop, Esteve, Locsmándi, Csaba, Jean Lodge, Deborah, Loizides, Michael, Lőkös, László, Luangsa-ard, Jennifer, Lüderitz, Matthia, Lumbsch, Thorsten, Lutz, Matthia, Mahoney, Dan, Malysheva, Ekaterina, Malysheva, Vera, Manimohan, Patinjareveettil, Marin-Felix, Yasmina, Marques, Guilhermina, Martínez-Gil, Rubén, Marson, Guy, Mata, Gerardo, Brandon Matheny, P., Harald Mathiassen, Geir, Matočec, Neven, Mayrhofer, Helmut, Mehrabi, Mehdi, Melo, Ireneia, Mešić, Armin, Methven, Andrew S., Miettinen, Otto, Millanes Romero, Ana M., Miller, Andrew N., Mitchell, James K., Moberg, Roland, Moreau, Pierre-Arthur, Moreno, Gabriel, Morozova, Olga, Morte, Asunción, Muggia, Lucia, Muñoz González, Guillermo, Myllys, Leena, Nagy, István, Nagy, László G., Alice Neves, Maria, Niemelä, Tuomo, Nimis, Pierluigi, Niveiro, Nicola, Noordeloos, Machiel E., Nordin, Ander, Raouia Noumeur, Sara, Novozhilov, Yuri, Nuytinck, Jorinde, Ohenoja, Esteri, Oliveira Fiuza, Patricia, Orange, Alan, Ordynets, Alexander, Ortiz-Santana, Beatriz, Pacheco, Leticia, Pál-Fám, Ferenc, Palacio, Melissa, Palice, Zdeněk, Papp, Viktor, Pärtel, Kadri, Pawlowska, Julia, Paz, Aurelia, Peintner, Ursula, Pennycook, Shaun, Liparini Pereira, Olinto, Pérez Daniëls, Pablo, Pérez-De-Gregorio Capella, Miquel À., Manuel Pérez del Amo, Carlo, Pérez Gorjón, Sergio, Pérez-Ortega, Sergio, Pérez-Vargas, Israel, Perry, Brian A., Petersen, Jens H., Petersen, Ronald H., Pfister, Donald H., Phukhamsakda, Chayanard, Piątek, Marcin, Piepenbring, Meike, Pino-Bodas, Raquel, Pablo Pinzón Esquivel, Juan, Pirot, Paul, Popov, Eugene S., Popoff, Orlando, Prieto Álvaro, María, Printzen, Christian, Psurtseva, Nadezhda, Purahong, Witoon, Quijada, Lui, Rambold, Gerhard, Ramírez, Natalia A., Raja, Huzefa, Raspé, Olivier, Raymundo, Tania, Réblová, Martina, Rebriev, Yury A., de Dios Reyes García, Juan, Ángel Ribes Ripoll, Miguel, Richard, Franck, Richardson, Mike J., Rico, Víctor J., Lucio Robledo, Gerardo, Rodrigues Barbosa, Flavia, Rodriguez-Caycedo, Cristina, Rodriguez-Flakus, Pamela, Ronikier, Anna, Rubio Casas, Lui, Rusevska, Katerina, Saar, Günter, Saar, Irja, Salcedo, Isabel, Salcedo Martínez, Sergio M., Salvador Montoya, Carlos A., Sánchez-Ramírez, Santiago, Vladimir Sandoval-Sierra, J., Santamaria, Sergi, Santana Monteiro, Josiane, Josef Schroers, Han, Schulz, Barbara, Schmidt-Stohn, Geert, Schumacher, Trond, Senn-Irlet, Beatrice, Ševčíková, Hana, Shchepin, Oleg, Shirouzu, Takashi, Shiryaev, Anton, Siepe, Klau, Sir, Esteban B., Sohrabi, Mohammad, Soop, Karl, Spirin, Viacheslav, Spribille, Toby, Stadler, Marc, Stalpers, Joost, Stenroos, Soili, Suija, Ave, Sunhede, Stellan, Svantesson, Sten, Svensson, Sigvard, Svetasheva, Tatyana Yu., Świerkosz, Krzysztof, Tamm, Heidi, Taskin, Hatira, Taudière, Adrien, Tedebrand, Jan-Olof, Tena Lahoz, Raúl, Temina, Marina, Thell, Arne, Thines, Marco, Thor, Göran, Thüs, Holger, Tibell, Leif, Tibell, Sanja, Timdal, Einar, Tkalčec, Zdenko, Tønsberg, Tor, Trichies, Gérard, Triebel, Dagmar, Tsurykau, Andrei, Tulloss, Rodham E., Tuovinen, Veera, Ulloa Sosa, Miguel, Urcelay, Carlo, Valade, Françoi, Valenzuela Garza, Ricardo, van den Boom, Pieter, Van Vooren, Nicola, Vasco-Palacios, Aida M., Vauras, Jukka, Manuel Velasco Santos, Juan, Vellinga, Else, Verbeken, Annemieke, Vetlesen, Per, Vizzini, Alfredo, Voglmayr, Hermann, Volobuev, Sergey, von Brackel, Wolfgang, Voronina, Elena, Walther, Grit, Watling, Roy, Weber, Evi, Wedin, Mat, Weholt, Øyvind, Westberg, Martin, Yurchenko, Eugene, Zehnálek, Petr, Zhang, Huang, Zhurbenko, Mikhail P., Ekman, Stefan, Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Purdue University [West Lafayette], Universidade de Lisboa = University of Lisbon (ULISBOA), Universidade Federal de Viçosa = Federal University of Viçosa (UFV), Meise Botanic Garden [Belgium] (Plantentuin), Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Westerdijk Fungal Biodiversity Institute [Utrecht] (WI), Conservatoire et Jardin Botaniques de Genève (CJBG), Staatlichen Naturwissenschaftlichen Sammlungen Bayerns (SNSB), Universiteit Gent = Ghent University (UGENT), Finnish Museum of Natural History, Plant Biology, Tuula Niskanen / Principal Investigator, Botany, Doctoral Programme in Wildlife Biology, IMT Lille Douai, Institut Catholique Lille, Univ. Artois, IMPact de l'Environnement Chimique sur la Santé humaine (IMPECS) - EA 4483, Naturalis Biodiversity Center, and Evolutionary and Population Biology (IBED, FNWI)
- Subjects
0106 biological sciences ,0301 basic medicine ,POSITIVE SELECTION ,Biologisk systematik ,VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Genetikk og genomikk: 474 ,Speciation ,[SDV]Life Sciences [q-bio] ,IMC11 ,nomenclature ,speciation ,taxonomy ,typification ,voucherless fungi ,Biodiversity ,voucherless fung ,VDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Systematisk botanikk: 493 ,Biological Systematics ,Matematikk og Naturvitenskap: 400::Basale biofag: 470 [VDP] ,01 natural sciences ,Voucherless fungi ,purl.org/becyt/ford/1 [https] ,Typification ,Environmental DNA ,CY3-LABELED OLIGONUCLEOTIDE PROBES ,Nomenclature ,ta119 ,GENE TREES ,1184 Genetics, developmental biology, physiology ,Soil Biology ,FRESH-WATER FUNGI ,PE&RC ,Agricultural and Biological Sciences (miscellaneous) ,INTERNAL TRANSCRIBED SPACER ,FUNGAL PHYLOGENY ,[SDE]Environmental Sciences ,Taxonomy (biology) ,RIBOSOMAL-RNA ,INTEGRATIVE TAXONOMY ,Biology ,VDP::Mathematics and natural science: 400::Basic biosciences: 470::Genetics and genomics: 474 ,010603 evolutionary biology ,OPERATIONAL TAXONOMIC UNITS ,DNA sequencing ,Article ,SPECIES DELIMITATION ,03 medical and health sciences ,IMC11 nomenclature ,Internal transcribed spacer ,purl.org/becyt/ford/1.6 [https] ,Ecology, Evolution, Behavior and Systematics ,Bodembiologie ,Taxonomy ,VDP::Mathematics and natural science: 400::Zoology and botany: 480::Systematic botany: 493 ,Biology and Life Sciences ,IN-SITU HYBRIDIZATION ,CY3-LABELED ,Laboratorium voor Phytopathologie ,voucherless ,030104 developmental biology ,Taxon ,Evolutionary biology ,Laboratory of Phytopathology ,ta1181 ,BIODIVERSITY ,fungi ,OLIGONUCLEOTIDE PROBES - Abstract
Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN. Publisher’s Note A first version of this text was prepared by the first eight authors and the last one, given here. The other listed co-authors in the article PDF support the content, and their actual contributions varied from only support to additions that substantially improved the content. The full details of all co-authors, with their affiliations, are included in Supplementary Table 1 after p.175 of the article for reasons of clarity and space. Slavomír Adamčík Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Teuvo Ahti Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland M. Catherine Aime Purdue University, 915 W. State St., West Lafayette, Indiana 47907, U.S.A. A. Martyn Ainsworth Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom László Albert Hungarian Mycological Society, 1087 Könyves Kálmán krt. 40, Budapest, Hungary Edgardo Albertó Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, Universidad Nacional de San Martin-Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina Alberto Altés García Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Dmitry Ageev SIGNATEC Ltd., 630090, Novosibirsk, Akademgorodok (Novosibirsk Scientific Center), Inzhenernaya str., 22, Russia Reinhard Agerer Ludwig-Maximilians-Universität München, Menzinger Str. 67, 80638 München, Germany Begona Aguirre-Hudson Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom Joe Ammirati University of Washington, Seattle, Washington 98195-1800, U.S.A. Harry Andersson Eichhahnweg 29a, 38108 Braunschweig, Germany Claudio Angelini Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Apartado 21-9, Santo Domingo, Dominican Republic Vladimír Antonín Moravian Museum, Zeny trh 6, 659 37 Brno, Czech Republic Takayuki Aoki Genetic Resources Center, National Agriculture and Food Research Organization, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan André Aptroot ABL Herbarium, G.v.d.Veenstraat 107, 3762 XK Soest, The Netherlands Didier Argaud 40 rue du Justemont, 57290 Fameck, France Blanca Imelda Arguello Sosa Instituto Tecnológico de Ciudad Victoria, Tecnológico Nacional de México, Ciudad Victoria, Tamaulipas, Mexico Arne Aronsen Torødveien 54, 3135 Torød, Norway Ulf Arup Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Bita Asgari Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization, Tehran, Iran Boris Assyov Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Str., 1113 Sofia, Bulgaria Violeta Atienza Facultad de Ciencias Biológicas, Universitat de València, C/Dr Moliner 50, 46100, Burjasot, Valencia, Spain Ditte Bandini Panoramastr 47, 69257 Wiesenbach, Germany João Luís Baptista-Ferreira Instituto de Biossistemas e Ciências Integrativas, Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal Hans-Otto Baral Blaihofstr. 42, 72074 Tübingen, Germany Tim Baroni The State University of New York, 340 Bowers Hall, P.O. Box 2000, Cortland, New York 13045, U.S.A. Robert Weingart Barreto Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Henry Beker (1) Royal Holloway, University of London, United Kingdom; (2) Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Ann Bell 45 Gurney Road, Lower Hutt, New Zealand Jean-Michel Bellanger CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Francesco Bellù Naturmusem of Bolzano, CP 104, 39100, Bolzano, Italy Martin Bemmann Kleingemünderstraße 111, 69118 Heidelberg, Germany Mika Bendiksby NTNU, University Museum, Norwegian University of Science and Technology, 7491 Trondheim, Norway Egil Bendiksen Norwegian Institute for Nature Research, Gaustadalleen 21, 0349 Oslo, Norway Katriina Bendiksen Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Lajos Benedek Szent Istvan University, Hungary Anna Bérešová-Guttová Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Franz Berger University of Salzburg, Salzburg, Austria Reinhard Berndt Herbaria Z+ZT, ETH Zürich, CHN D37, Universitätstr. 16, 8092 Zürich, Switzerland Annarosa Bernicchia Via A. Guidotti 39, 40134 Bologna, Italy Alona Yu. Biketova Institute of Biochemistry, BRC-HAS, 6726 Szeged, Temesvari krt. 62, 6726 Szeged, Hungary Enrico Bizio Società Veneziana di Micologia, Società Veneziana di Scienze Naturali, Fontego dei Turchi, Santa Croce 1730, 30135 Venice, Italy Curtis Bjork UBC Herbarium, Beaty Biodiversity Museum, University of British Columbia, Canada Teun Boekhout (1) Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; (2) Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands David Boertmann Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark Tanja Böhning AG Geobotanik Schleswig-Holstein & Hamburg, c/o University of Kiel, Olshausenstraße 75, 24098 Kiel, Germany Florent Boittin Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Carlos G. Boluda Conservatoire et Jardin botaniques de la Ville de Genève, 1292 Genève, Switzerland Menno W. Boomsluiter T.v.Lohuizenstraat 34, 8172xl, Vaassen, The Netherlands Jan Borovička Institute of Geology, Czech Academy of Sciences, Rozvojova 269, 165 00 Prague 6, Czech Republic Tor Erik Brandrud Norwegian Institute for Nature Research, Gaustadalleen 21, 0349 Oslo, Norway Uwe Braun Martin-Luther-Universität, Institut für Biologie, Bereich Geobotanik, und Botanischer Garten, Herbarium, Neuwerk 21, 06099 Halle, Germany Irwin Brodo Canadian Museum of Nature, 240 McLeod Street, Ottawa, Ontario, Canada Tatiana Bulyonkova A.P. Ershov Institute of Informatics Systems, Russian Academy of Sciences, Siberian Branch, 6 Acad. Lavrentjev pr., Novosibirsk 630090, Russia Harold H. Burdsall Jr. Fungal & Decay Diagnostics, LLC, 9350 Union Valley Road, Black Earth, Wisconsin 53515, U.S.A. Bart Buyck Muséum National d’Histoire Naturelle, CP 39, ISYEB, UMR 7205 CNRS MNHN UPMC EPHE, 12 rue Buffon, 75005 Paris, France Ana Rosa Burgaz Facultad de Ciencias Biológicas, Universidad Complutense de Madrid, 28040 Madrid, Spain Vicent Calatayud Fundación CEAM, c/ Charles R. Darwin, 14, Parque Tecnológico, 46980 Paterna, Valencia, Spain Philippe Callac INRA, MycSA, CS 20032, 33882 Villenave d’Ornon, France Emanuele Campo Associazione Micologica Bresadola, Via Alessandro Volta 46, 38123 Trento, Italy Massimo Candusso Via Ottone Primo 90, 17021, Alassio, Savona, Italy Brigitte Capoen Queffioec, rue de Saint Gonval, 22710 Penvenan, France Joaquim Carbó Roser, 60, 17257 Torroella de Montgrí, Girona, Spain Matteo Carbone Via Don Luigi Sturzo 173 16148 Genova, Italy Rafael F. Castañeda-Ruiz Instituto de Investigaciones Fundamentales en Agricultura, Tropical ‘Alejandro de Humboldt’, OSDE, Grupo Agrícola, Calle 1 Esq. 2, Santiago de Las Vegas, C. Habana 17200, Cuba Michael A. Castellano USDA, Forest Service, Northern Research Station, Corvallis, Oregon 97330, U.S.A. Jie Chen Mae Fah Luang University, Chang Wat Chiang Rai 57100, Thailand Philippe Clerc Conservatoire et Jardin botaniques de la Ville de Genève, 1292 Genève, Switzerland Giovanni Consiglio Via C. Ronzani 61, 40033 Casalecchio Bologna, Italy Gilles Corriol National Botanical Conservatory for Pyrenees and Midi-Pyrénées Region of France and BBF Herbarium, Vallon de Salut. B.P. 315. 65203 Bagnères-de-Bigorre, France Régis Courtecuisse Université Lille, Fac. Pharma. Lille, EA4483 IMPECS, 59000 Lille, France Ana Crespo Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain Cathy Cripps Plant Sciences & Plant Pathology, 119 Plant Biosciences Building, Montana State University, Bozeman, Montana 59717, U.S.A. Pedro W. Crous Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Gladstone Alves da Silva Universidade Federal de Pernambuco, Centro de Biociências, Avenida da Engenharia, S/N, Cidade Universitária, Recife, Pernambuco, Brazil Meiriele da Silva Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Marjo Dam Hooischelf 13, 6581 SL Malden, The Netherlands Nico Dam Hooischelf 13, 6581 SL Malden, The Netherlands Frank Dämmrich The Bavarian Natural History Collections (SNSB Munich), Menzinger Strasse 71, 80638, München, Germany Kanad Das Botanical Survey of India, Cryptogamic Unit, P.O. Botanic Garden, Howrah 711103, W.B., India Linda Davies Centre for Environmental Policy, Imperial College London, SW7 2AZ, United Kingdom Eske De Crop Ghent University K.L. Ledeganckstraat 35, 9000 Ghent, Belgium Andre De Kesel Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Ruben De Lange Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium Bárbara De Madrignac Bonzi Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Thomas Edison E. dela Cruz University of Santo Tomas, Espana 1008 Manila, Philippines Lynn Delgat Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium Vincent Demoulin Institut de Botanique, B.22, Université de Liège, 4000 Liège I, Belgium Dennis E. Desjardin HD Thiers Herbarium (SFSU), San Francisco State University, 1600 Holloway Ave, San Francisco, California 94132, U.S.A. Paul Diederich Musée national d’histoire naturelle, 25 rue Münster, 2160 Luxembourg, Luxembourg Bálint Dima (1) Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary; (2) Viikki Plant Science Centre, University of Helsinki, P.O. Box 65, 00014 Helsinki, Finland Maria Martha Dios Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Catamarca, Av Belgrano 300, 4700 San Fernando del Valle de Catamarca, Argentina Pradeep Kumar Divakar Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain Clovis Douanla-Meli Julius Kühn-Institut, Federal Research Centre for Cultivated Plants, Institute for National and International Plant Health, Messeweg 11-12, 38104 Braunschweig, Germany Brian Douglas Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom Elisandro Ricardo Drechsler-Santos Universidade Federal de Santa Catarina, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis, Santa Catarina CEP 88040-900, Brazil Paul S. Dyer School of Life Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom Ursula Eberhardt Abt. Botanik, Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany Damien Ertz Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Fernando Esteve-Raventós Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Javier Angel Etayo Salazar Navarro Villoslada 16, 3º dcha., 31003 Pamplona, Navarra, Spain Vera Evenson Sam Mitchel Herbarium of Fungi, Denver Botanic Gardens, 1007 York Street, Denver, Colorado 80206, U.S.A. Guillaume Eyssartier Muséum national d’histoire naturelle, Jardin des plantes, 57 rue Cuvier, 75005 Paris, France Edit Farkas Institute of Ecology and Botany, MTA Centre for Ecological Research, 2163 Vácrátót, Hungary Alain Favre Fédération Mycologique et Botanique Dauphiné Savoie, Le Prieuré, 144 Place de l’Eglise, 74320 Sevrier, France Anna G. Fedosova Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Mario Filippa Regione Monsarinero 36, 14041 Agliano Terme, Italy Péter Finy 8000 Székesfehérvár, Zsombolyai u. 56, Hungary Adam Flakus W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Simón Fos Facultad de Ciencias Biológicas, Universitat de València, C/Dr Moliner 50, 46100, Burjasot, Valencia, Spain Jacques Fournier Las Muros, F. 09420 Rimont, France André Fraiture Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Paolo Franchi Associazione Micologica Bresadola, Via Alessandro Volta 46, 38123 Trento, Italy Ana Esperanza Franco Molano Escuela de Microbiología, Universidad de Antioquia, AA1226, Fundación Biodiversa Colombia, Medellín, Colombia Gernot Friebes Centre of Natural History, Botany & Mycology, Universalmuseum Joanneum, Weinzöttlstraße 16, 8045 Graz, Austria Andreas Frisch NTNU, University Museum, Norwegian University of Science and Technology, 7491 Trondheim, Norway Alan Fryday Michigan State University, East Lansing, Michigan 48824, U.S.A. Giuliana Furci The Fungi Foundation, Paseo Bulnes 79 of. 112A, Santiago, Chile Ricardo Galán Márquez Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Matteo Garbelotto University of California, 130 Mulford Hall #3114 Berkeley, California 94720, U.S.A. Joaquina Maria Garcia-Martin Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Mónica A. García Otálora Herbaria Z+ZT, ETH Zürich, CHN D37, Universitätstr. 16, 8092 Zürich, Switzerland Dania García Sánchez Universitat Rovira i Virgili, C/ Sant Llorenç 21, 43201 Reus, Tarragona, Spain Alain Gardiennet 14 rue Roulette, 21260 Véronnes, France Sigisfredo Garnica Instituto de Bioquímica y Microbiología, Universidad Austral de Chile, Isla Teja Campus, Casilla 567, Valdivia, Chile Isaac Garrido Benavent Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Genevieve Gates Tasmanian Institute of Agriculture, Private Bag 54, Hobart, Tasmania 7001, Australia Alice da Cruz Lima Gerlach Conservatoire et Jardin Botaniques de la ville de Genève, Genève, Switzerland Masoomeh Ghobad-Nejhad Iranian Research Organization for Science and Technology, P.O. Box 15815-3538, Tehran 15819, Iran Tatiana B. Gibertoni Universidade Federal de Pernambuco, Centro de Biociências, Avenida da Engenharia, S/N, Cidade Universitária, Recife, Pernambuco, Brazil Tine Grebenc Slovenian Forestry Institute, Vecna pot 2, 100 Ljubljana, Slovenia Irmgard Greilhuber University of Vienna, Rennweg 14, 1030 Vienna, Austria Bella Grishkan Institute of Evolution, University of Haifa, Aba Khoushi Ave. 199, Mt. Carmel, Haifa 3498838, Israel Johannes Z. Groenewald Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Martin Grube Institute of Biology, University of Graz, Holteiasse 6, 8010 Graz, Austria Gérald Gruhn Office National des Forêts, 2 Avenue de Saint-Mandé, 75570 Paris Cedex 12, France Cécile Gueidan CSIRO — Australian National Herbarium, Clunies Ross Street, Canberra ACT 2601, Australia Gro Gulden Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Luis FP Gusmão Universidade Estadual de Feira de Santana, Av. Transnordestina, s/n, Bairro Novo Horizonte, CEP:44036-900, Feira de Santana, Bahia, Brazil Josef Hafellner Institute of Biology, University of Graz, Holteiasse 6, 8010 Graz, Austria Michel Hairaud 2 Impasse des Marronniers, 79360 Poivendre de Marigny, France Marek Halama Museum of Natural History, Wrocław University, ul. H. Sienkiewicza 5, 50-335 Wrocław, Poland Nils Hallenberg University of Gothenburg, Box 461, 40530 Göteborg, Sweden Roy E. Halling Institute of Systematic Botany, New York Botanical Garden, 2900 Southern Blvd, Bronx, New York 10458-5126, U.S.A. Karen Hansen Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Christoffer Bugge Harder Texas Tech University, Box 42122, Lubbock, Texas 79409, U.S.A. Jacob Heilmann-Clausen Natural History Museum of Denmark, Universitetsparken 15, 2100 København, Denmark Stip Helleman Sweelinck 78, 5831KT Boxmeer, The Netherlands Alain Henriot Mycological Society of France, 20 rue Rottembourg, 12th arrondissement, Paris, France Margarita Hernandez-Restrepo Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Raphaël Herve 24 rue des Fougères, 86550 Mignaloux-Beauvoir, France Caroline Hobart 84 Stafford Road, Sheffield, South Yorkshire S2 2SF, United Kingdom Mascha Hoffmeister Julius Kühn-Institut, Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany Klaus Høiland University of Oslo, P.O.Box 1066, Blindern, 0316 Oslo, Norway Jan Holec National Museum, Herbarium PRM, Cirkusová 1740, 193 00 Praha 9, Czech Republic Håkon Holien Faculty of Bioscience and Aquaculture, NORD University, P.O. Box 2501, 7729 Steinkjer, Norway Karen Hughes University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Vit Hubka Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Seppo Huhtinen Herbarium TUR, Biodiversity Unit, University of Turku, 20014 Turku, Finland Boris Ivančević Natural History Museum, Njegoševa 51, P.O. Box 401, 11000 Belgrade, Serbia Marian Jagers Reelaan 13, 7522 LR Enschede, The Netherlands Walter Jaklitsch Institute of Forest Entomology, Forest Pathology and Forest Protection, University of Natural Resources and Life Sciences Vienna, Vienna, Austria AnnaElise Jansen Stationsstraat 10, 6701 AM Wageningen, the Netherlands Ruvishika S. Jayawardena Mae Fah Luang University, Chang Wat Chiang Rai 57100, Thailand Thomas Stjernegaard Jeppesen Global Biodiversity Information Facility, Universitetsparken 15, 2100 København Ø, Denmark Mikael Jeppson Lilla Håjumsgatan 4, 46135 Trollhättan, Sweden Peter Johnston Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1072, New Zealand Per Magnus Jørgensen University of Bergen, Allégaten 41, P.O. Box 7800, 5020 Bergen, Norway Ingvar Kärnefelt Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Liudmila B. Kalinina Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Gintaras Kantvilas Tasmanian Herbarium (HO), Tasmanian Museum and Art Gallery, P.O. Box 5058, UTAS LP.O., Sandy Bay, Tasmania 7005, Australia Mitko Karadelev Institute of Biology, Faculty of Natural Science and Mathematics, Ss. Cyril and Methodius University, Arhimedova 5, 1000 Skopje, Republic of Macedonia Taiga Kasuya Faculty of Risk and Crisis Management, Chiba Institute of Science, 3 Shiomi-cho, Choshi, Chiba 288-0025, Japan Ivona Kautmanová Natural History Museum, Slovak National Museum, Bratislava, Slovakia Richard W. Kerrigan RWK Research, Kittanning, Pennsylvania 16201, U.S.A. Martin Kirchmair Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria Anna Kiyashko Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Dániel G. Knapp Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary Henning Knudsen Natural History Museum of Denmark, Universitetsparken 15, 2100 København, Denmark Kerry Knudsen Faculty of Environmental Sciences, University of Life Sciences at Prague, Prague, Czech Republic Tommy Knutsson Nedra Västerstad 111, 380 62 Mörbylånga, Sweden Miroslav Kolařík Institute of Microbiology ASCR, Videnska 1083, 142 20 Prague 4, Czech Republic Urmas Kõljalg Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Alica Košuthová Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Attila Koszka Faculty of Agricultural and Environmental Sciences, Kaposvar University, 7400 Kaposvar, Hungary Heikki Kotiranta Finnish Environment Institute, P.O. Box 140, 00251 Helsinki, Finland Vera Kotkova Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Ondřej Koukol Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Jiří Kout University of West Bohemia, Faculty of Education, Klatovska 51, 306 19 Pilsen, Czech Republic Gábor M. Kovács Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary Martin Kříž Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Åsa Kruys Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Viktor Kučera Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Linas Kudzma 37 Maple Ave. Annandale, New Jersey 08801, U.S.A. Francisco Kuhar Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina Martin Kukwa Faculty of Biology, University of Gdańsk, Wita Stwosza 59, 80-308 Gdańsk, Poland T. K. Arun Kumar The Zamorin’s Guruvayurappan College, Kozhikode, Kerala 673014, India Vladimír Kunca Technical University in Zvolen, Ul. T. G. Masaryka 24, 960 53 Zvolen,Slovakia Ivana Kušan Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Thomas W. Kuyper Wageningen University & Research, Droevendaalsesteeg 4, 6708 PB Wageningen, The Netherlands Carlos Lado Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Thomas Læssøe Natural History Museum of Denmark, Universitetsparken 15, 2100 København, Denmark Patrice Lainé 123 rue Saint Antoine, 75004, Paris, France Ewald Langer University of Kassel, Heinrich-Plett-Strasse 40, 34132 Kassel, Germany Ellen Larsson University of Gothenburg, Box 461, 40530 Göteborg, Sweden Karl-Henrik Larsson Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Gary Laursen Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska 99775-7000, U.S.A. Christian Lechat Ascofrance, 64 route de Chizé, 79360 Villiers en Bois, France Serena Lee Herbarium Singapore Botanic Gardens, National Parks Board, Singapore James C. Lendemer (1) Institute of Systematic Botany, New York Botanical Garden, 2900 Southern Blvd, Bronx, New York 10458-5126, U.S.A.; (2) Graduate Center, City University of New York, 365 5th Ave, New York, New York 10016, U.S.A. Laura Levin University of Buenos Aires, Junin 956, 1113, Buenos Aires, Argentina Uwe Lindemann Landesmuseum für Naturkunde, Münster, Germany Håkan Lindström Östansjö 150, 840 64 Kälarne, Sweden Xingzhong Liu Institute of Microbiology, Chinese Academy of Sciences, No 3 Park 1, Beichen West Road, Chaoyang District, Beijing 100101, China Regulo Carlos Llarena Hernandez Facultad de Ciencias Biológicas y Agropecuarias, Peñuela, Universidad Veracruzana, Amatlán de los Reyes, Ver., Mexico Esteve Llop Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 643, 08028 Barcelona, Spain Csaba Locsmándi Hungarian Natural History Museum, 1087 Budapest, Hungary Deborah Jean Lodge USDA Forest Service, NRS, P.O. Box 1377, Luquillo, Puerto Rico 00773-1377, U.S.A. Michael Loizides P.O. Box 58499, 3734 Limassol, Cyprus László Lőkös Hungarian Natural History Museum, 1087 Budapest, Hungary Jennifer Luangsa-ard National Center for Genetic Engineering and Biotechnology (BIOTEC), NSTDA, 113 Thailand Science Park, Phaholyothin Rd., Klong Nueng, Klong Luang, Pathum Thani 12120, Thailand Matthias Lüderitz AG Geobotanik Schleswig-Holstein & Hamburg, c/o University of Kiel, Olshausenstraße 75, 24098 Kiel, Germany Thorsten Lumbsch Field Museum, 1400 S. Lake Shore Dr., Chicago, Illinois 60605, U.S.A. Matthias Lutz Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076 Tübingen, Germany Dan Mahoney Callaghan Innovation, 69 Gracefield Road, Lower Hutt 5010, New Zealand Ekaterina Malysheva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Vera Malysheva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Patinjareveettil Manimohan University of Calicut, Kerala, 673 635, India Yasmina Marin-Felix Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Guilhermina Marques Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Tras-os-Montes and Alto Douro, Laboratory of Mycology and Soil Microbiology, 5000-801 Vila Real, Portugal Rubén Martínez-Gil Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Guy Marson Musée national d’histoire naturelle, 25 rue Münster, 2160 Luxembourg, Luxembourg Gerardo Mata Instituto de Ecología, A.C., Carretera antigua a Coatepec 351, El Haya, Xalapa 91070, Veracruz, Mexico P. Brandon Matheny University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Geir Harald Mathiassen Tromsø University Museum, University of Tromsø — The Arctic University of Norway, 9037 Tromsø, Norway Neven Matočec Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Helmut Mayrhofer Institute of Biology, University of Graz, Holteiasse 6, 8010 Graz, Austria Mehdi Mehrabi Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization, Tehran, Iran Ireneia Melo Botanical Garden, National Museum of Natural History and Science, University of Lisbon, Portugal Armin Mešić Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Andrew S. Methven Savannah State University, Savannah, Georgia 31404, U.S.A Otto Miettinen Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Ana M. Millanes Romero Universidad Rey Juan Carlos, 28933 Móstoles, Madrid, Spain Andrew N. Miller Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, Illinois 61820-6970, U.S.A. James K. Mitchell Harvard University, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. Roland Moberg Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Pierre-Arthur Moreau Université Lille, Fac. Pharma. Lille, EA4483 IMPECS, 59000 Lille, France Gabriel Moreno Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Olga Morozova Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Asunción Morte Facultad de Biología, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain Lucia Muggia University of Trieste, via L. Giorgieri 10, 34127 Trieste, Italy Guillermo Muñoz González Avda Valvanera N.32, 5D, 26500 Calahorra, La Rioja, Spain Leena Myllys Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland István Nagy Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary László G. Nagy Institute of Biochemistry, BRC-HAS, 6726 Szeged, Temesvari krt. 62, 6726 Szeged, Hungary Maria Alice Neves Universidade Federal de Santa Catarina, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis, Santa Catarina CEP 88040-900, Brazil Tuomo Niemelä Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Pier Luigi Nimis University of Trieste, via L. Giorgieri 10, 34127 Trieste, Italy Nicolas Niveiro Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Machiel E. Noordeloos Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands Anders Nordin Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Sara Raouia Noumeur Faculty of Natural and Life Sciences, University of Batna 2, 05000 Batna, Algeria Yuri Novozhilov Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Jorinde Nuytinck Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands Esteri Ohenoja Botanical Museum, University of Oulu, Finland Patricia Oliveira Fiuza Universidade Estadual de Feira de Santana, Av. Transnordestina, s/n, Bairro Novo Horizonte, CEP:44036-900, Feira de Santana, Bahia, Brazil Alan Orange National Museum of Wales, Cardiff CF10 3NP, United Kingdom Alexander Ordynets University of Kassel, Heinrich-Plett-Strasse 40, 34132 Kassel, Germany Beatriz Ortiz-Santana USDA Forest Service, Northern Research Station, One Gifford Pinchot Dr, Madison, Wisconsin 53726, U.S.A. Leticia Pacheco Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 México, D. F., Mexico Ferenc Pál-Fám Faculty of Agricultural and Environmental Sciences, Kaposvar University, 7400 Kaposvar, Hungary Melissa Palacio Universidade Federal do Rio Grande do Sul, Brazil Zdeněk Palice Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Viktor Papp Szent Istvan University, 1118 Budapest, Menesi st. 44, Hungary Kadri Pärtelv Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Julia Pawlowska Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland Aurelia Paz Urb. La Llosa, 219, 39509 Villanueva de la Peña, Mazcuerras, Cantabria, Spain Ursula Peintner Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria Shaun Pennycook Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1072, New Zealand Olinto Liparini Pereira Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Pablo Pérez Daniëls University of Córdoba, 14071, Córdoba, Spain Miquel À. Pérez-De-Gregorio Capella C/ Pau Casals, 6, 1º, 1ª, 17001, Girona, Spain Carlos Manuel Pérez del Amo C/ Luis de Ulloa, 1, 7º I, 26004 Logroño, Navarra, Spain Sergio Pérez Gorjón Universidad de Salamanca, Avda. Licenciado Mendez Nieto s/n, 37007 Salamanca, Spain Sergio Pérez-Ortega Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Israel Pérez-Vargas Facultad de Farmacia, Universidad de La Laguna, c/ Astrofísico Sánchez s/n 38071 La Laguna, Tenerife, Canary Islands, Spain Brian A. Perry California State University East Bay, Hayward, California 94542, U.S.A. Jens H. Petersen Nøruplundvej 2, 8400 Ebeltoft, Denmark Ronald H. Petersen University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Donald H. Pfister Harvard University, 22 Divinity Avenue, Cambridge MA 02138, U.S.A. Chayanard Phukhamsakda Mae Fah Luang University, Chang Wat Chiang Rai 57100, Thailand Marcin Piątek W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Meike Piepenbring Faculty of Biosciences, Goethe University Frankfurt am Main, Germany Raquel Pino-Bodas Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Juan Pablo Pinzón Esquivel Universidad Autónoma de Yucatán, Carretera Mérida-Xmatkuil Km. 15.5, Apdo. Postal: 4-116 Itzimná,C.P: 97100, Merida, Yucatan, Mexico Paul Pirot Rue des Peupliers 10, 6840 Neufchâteau, Belgium Eugene S. Popov Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Orlando Popoff Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina María Prieto Álvaro Universidad Rey Juan Carlos, 28933 Móstoles, Madrid, Spain Christian Printzen Senckenberg Forschungsinstitut und Naturmuseum Frankfurt, Abteilung Botanik und Molekulare Evolutionsforschung, Herbarium Senckenbergianum (FR), Senckenberganlage 25, 60325 Frankfurt am Main, Germany Nadezhda Psurtseva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Witoon Purahong Helmholtz Centre for Environmental Research GmbH — UFZ, Theodor-Lieser-Straße 4, 06120 Halle, Germany Luis Quijada Harvard University, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. Gerhard Rambold University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany Natalia A. Ramírez Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Huzefa Raja University of North Carolina at Greensboro, 435 Sullivan Science Building, PO Box 26170, Greensboro North Carolina 27402-6170, U.S.A. Olivier Raspé Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Tania Raymundo Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Miguel Hidalgo, Santo Tomás, 11340 Ciudad de México, Mexico Martina Réblová Institute of Botany, Czech Academy of Sciences, Pruhonice, Czech Republic Yury A. Rebriev Southern Scientific Center, Russian Academy of Sciences, 41 Chehova str., Rostov-on-Don, 344006, Russia Juan de Dios Reyes García Paseo Virgen de Linarejos 6 2 D, Linares, Jaen, Spain Miguel Ángel Ribes Ripoll Avda. Pablo Neruda 120 F, 2°D, 28018 Madrid, Spain Franck Richard CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Mike J. Richardson Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, United Kingdom Víctor J. Rico Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain Gerardo Lucio Robledo Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina Flavia Rodrigues Barbosa Universidade Federal de Mato Grosso, Av. Alexandre Ferronato, 1200, Setor Industrial, Sinop, Mato Grosso, Brazil Cristina Rodriguez-Caycedo UT Southwestern Medical Center, Dallas, Texas 75390, U.S.A. Pamela Rodriguez-Flakus W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Anna Ronikier W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Luis Rubio Casas Ul. Andrieja Sacharowa 1/1, 30-806 Kraków, Poland Katerina Rusevska Institute of Biology, Faculty of Natural Science and Mathematics, Ss. Cyril and Methodius University, Arhimedova 5, 1000 Skopje, Republic of Macedonia Günter Saar Dammenmühle 7, 77933 Lahr-Sulz, Germany Irja Saar Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Isabel Salcedo University of the Basque Country (UPV/EHU), Apdo 644, 48080 Bilbao, Spain Sergio M. Salcedo Martínez Facultad de Ciencias Biológicas, UANL. Ave. Pedro de Alba s/n esq. Manuel Barragán Cd. Universitaria, San Nicolás de los Garza Nuevo León, CP. 66451, Mexico Carlos A. Salvador Montoya Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Santiago Sánchez-Ramírez University of Toronto, 100 Queen’s Park, Toronto, Ontario M5S 2C6, Canada J. Vladimir Sandoval-Sierra Health Science Centre, University of Tennessee, U.S.A. Sergi Santamaria Facultat de Biociències, Edifici C, Despatx C1/331, Campus de la UAB, 08193 Bellaterra, (Cerdanyola del Vallès), Barcelona, Spain Josiane Santana Monteiro Botany Coordination, Museu Paraense Emílio Goeldi, 66077-830, Belém, Pará, Brazil Hans Josef Schroers Agricultural Institute of Slovenia, Hacquetova ulica 17, 1000 Ljubljana, Slovenia Barbara Schulz Institute of Microbiology, Technische Universität Braunschweig, Germany Geert Schmidt-Stohn Burgstr. 25, 29553 Bienenbüttel, Germany Trond Schumacher University of Oslo, P.O.Box 1066, Blindern, 0316 Oslo, Norway Beatrice Senn-Irlet RU Biodiversity and Conservation Biology, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstr. 111, 8903 Birmensdorf, Switzerland Hana Ševčíková Moravian Museum, Zeny trh 6, 659 37 Brno, Czech Republic Oleg Shchepin Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Takashi Shirouzu Graduate School of Bioresources, Mie University, 1577 Kurima-machiya, Tsu, Mie 514-8507, Japan Anton Shiryaev Institute of Plant & Animal Ecology Ural Branch of the Russian Academy of Sciences, 620144 Ekaterinburg, 8 March str., 202/3, Russia Klaus Siepe Geeste 133, 46342 Velen, Germany Esteban B. Sir Fundación Miguel Lillo, Consejo Nacional de Investigaciones Científicas y Técnicas, Miguel Lillo 251, San Miguel de Tucumán 4000, Tucumán, Argentina Mohammad Sohrabi Iranian Research Organization for Science and Technology, P.O. Box 33535111, Tehran, Iran Karl Soop Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Viacheslav Spirin Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Toby Spribille University of Alberta, Edmonton, Alberta T6G 2R3, Canada Marc Stadler Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany Joost Stalpers Torenlaan 43, 3742CR Baarn, The Netherlands Soili Stenroos Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Ave Suija Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Stellan Sunhede Hökaskog Sandbacken 1, 533 92 Lundsbrunn, Sweden Sten Svantesson University of Gothenburg, Box 461, 40530 Göteborg, Sweden Sigvard Svensson Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Tatyana Yu. Svetasheva (1) Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia; (2) Department of Technologies of Living Systems, Tula State Lev Tolstoy Pedagogical University, Lenin ave. 125, Tula, 300026, Russia Krzysztof Świerkosz Museum of Natural History, Wrocław University, ul. H. Sienkiewicza 5, 50-335 Wrocław, Poland Heidi Tamm Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Hatira Taskin Faculty of Agriculture, University of Çukurova, 01330 Adana, Turkey Adrien Taudière CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Jan-Olof Tedebrand Sundsvall Mycological Society, Medelpad, Sweden Raúl Tena Lahoz C/Arreñales del Portillo B 21 1°D, 44003 Teruel, Spain Marina Temina Institute of Evolution, University of Haifa, Aba Khoushi Ave. 199, Mt. Carmel, Haifa 3498838, Israel Arne Thell Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Marco Thines Faculty of Biosciences, Goethe University Frankfurt am Main, Germany Göran Thor Swedish University of Agricultural Sciences, P. O. Box 7044, 750 07 Uppsala, Sweden Holger Thüs State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany Leif Tibell Evolutionary Biology Centre, Norbyvägen 18D, 75236 Uppsala, Sweden Sanja Tibell Evolutionary Biology Centre, Norbyvägen 18D, 75236 Uppsala, Sweden Einar Timdal Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Zdenko Tkalčec Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Tor Tønsberg University of Bergen, Allégaten 41, P.O. Box 7800, 5020 Bergen, Norway Gérard Trichies 5, impasse des Écoles S7700 Neufchef, France Dagmar Triebel Botanische Staatssammlung München, Menzinger Straße 67, 80638 München, Germany Andrei Tsurykau (1) F. Skorina Gomel State University, Sovetskaja Str. 104, 246019 Gomel, Belarus; (2) Institute of Natural Sciences, Samara National Research University, Moskovskoye shosse 34, 443086 Samara, Russia Rodham E. Tulloss Herbarium Amanitarum Rooseveltensis, P. O. Box 57, Roosevelt, New Jersey 08555-0057, U.S.A. Veera Tuovinen University of Alberta, Edmonton, Alberta T6G 2R3, Canada Miguel Ulloa Sosa Universidad Nacional Autónoma de México, Tercer Circuito/Sin Número, Ciudad Universitaria, Ciudad de México, C. P. 04510, Mexico Carlos Urcelay Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina François Valade 11 rue haras, le boqueteau, 91240 Saint-Michel-sur-Orge, France Ricardo Valenzuela Garza Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Miguel Hidalgo, Santo Tomás, 11340 Ciudad de México, Mexico Pieter van den Boom Arafura 16, 5691 JA Son, The Netherlands Nicolas Van Vooren Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Aida M. Vasco-Palacios Escuela de Microbiología, Universidad de Antioquia, AA1226, Fundación Biodiversa Colombia, Medellín, Colombia Jukka Vauras Herbarium TUR, Biodiversity Unit, University of Turku, 20014 Turku, Finland Juan Manuel Velasco Santos 3 C/Pontevedra, 18, 1º C, 37003 Salamanca, Spain Else Vellinga 861 Keeler Avenue, Berkeley, California 94708, U.S.A. Annemieke Verbeken Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium Per Vetlesen Norges Sopp- og Nyttevekstforbund, Schweigaards gate 34F, 0191 Oslo, Norway Alfredo Vizzini University of Torino, Viale P.A. Mattioli 25, 10125, Torino, Italy Hermann Voglmayr University of Vienna, Rennweg 14, 1030 Vienna, Austria Sergey Volobuev Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Wolfgang von Brackel Kirchenweg 2, 91341 Röttenbach, Germany Elena Voronina Lomonosov Moscow State University, Biology Faculty, Moscow, Russia Grit Walther Arvid-Harnack-Str. 4, 07743 Jena, Germany Roy Watling Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, United Kingdom Evi Weber Blaihofstr. 42, 72074 Tübingen, Germany Mats Wedin Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Øyvind Weholt Nord University, Nesna, 8700 Nesna, Norway Martin Westberg Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Eugene Yurchenko Polessky State University, Dnyaprouskai flatylii str. 23, 225710, Pinsk, Belarus Petr Zehnálek Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Huang Zhang Kunming University of Science & Technology, Kunming, China Mikhail P. Zhurbenko Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia The following institutions are also supporting the present text (institutional support means that committees from the mentioned) Asociación Micológica Carlos Spegazzini (Argentina) Austrian Mycological Society (Austria) Croatian Mycological Society (Croatia) Committee of the Czech Scientific Society for Mycology (Czech Republic) The Netherlands Mycological Society (The Netherlands) Sociedad Española de Liquenología (Portugal/Spain) Iberian Mycological Society (which is under constitution, Portugal/Spain) Federación de Asociaciones Micológicas Andaluzas (FAMA) (Spain) Asociación Botánica y Micológica de Jaén (Spain) Asociación Micológica Hispalense Muscaria (Spain) Societat Micològica Valenciana (Spain)
- Published
- 2018
7. First Report of Marasmiellus mesosporus Causing Marasmiellus Blight on Seashore Paspalum
- Author
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Lane P. Tredway, Dennis E. Desjardin, and Grady L. Miller
- Subjects
Chlorosis ,biology ,Inoculation ,food and beverages ,Plant Science ,biology.organism_classification ,Horticulture ,Marasmiellus ,Botany ,Basidiocarp ,Potato dextrose agar ,Blight ,Paspalum vaginatum ,Agronomy and Crop Science ,Paspalum - Abstract
Seashore paspalum (Paspalum vaginatum Sw.) is a newly cultivated C4 turfgrass that has exceptional salinity tolerance and is highly suited for use on golf courses in coastal areas. In October 2008 and June 2009, circular patches of blighted seashore paspalum ranging from 30 cm to >3 m in diameter were observed in fairways, tees, and roughs established with ‘Supreme’ seashore paspalum at Roco Ki Golf Club in Macao, Dominican Republic. Affected patches were initially chlorotic followed by reddish brown necrosis of leaves and leaf sheaths. Reddish brown-to-gray lesions were also observed on leaf sheaths during the early stages of necrosis. During periods of wet or humid weather from June through October, basidiocarps were produced on necrotic plant tissue and identified as Marasmiellus mesosporus Singer (2). Three isolates were obtained by plating symptomatic leaf sheaths that were surface sterilized with a 0.5% NaOCl solution on potato dextrose agar amended with 50 ppm each of streptomycin, chloramphenicol, and tetracycline (PDA+++). Sequences of the internal transcribed spacer (ITS) region of rDNA, obtained from these three isolates and three stipes of basidiocarps, were identical to each other and 99% similar to a M. mesosporus sequence deposited in the NCBI database (Accession No. AB517375). To confirm pathogenicity, a M. mesosporus isolate obtained from symptomatic plant tissue was inoculated onto 6-week-old P. vaginatum (‘Seaspray’) planted (0.5 mg seed/cm2) in 10-cm-diameter pots containing a mixture of 80% sand and 20% reed sedge peat. Two weeks prior to inoculation, the isolate was grown on a sterilized mixture of 100 cm3 of rye grain, 4.9 ml of CaCO3, and 100 ml of water. Infested grains were placed 0.5 cm below the soil surface for inoculation. Pots were inoculated with five infested grains or five sterilized, uninfested grains with three replications of each treatment. After inoculation, pots were placed in a growth chamber with a 12-h photoperiod set to 30°C during the day and 26°C at night. Approximately 20% of plants in inoculated pots were necrotic 7 days postinoculation and this increased to 75% by 21 days postinoculation. Diseased plants in inoculated pots exhibited symptoms similar to those observed in the field. Leaves were initially chlorotic with brown lesions on lower leaf sheaths and eventually turned necrotic, reddish brown, and collapsed. Pots receiving uninfested grains were healthy and showed no symptoms on all rating dates. At 21 days postinoculation, basidiocarps were observed emerging from three colonized plants at the base of the oldest leaf sheath near the crown. Three reisolations were made on PDA+++ from stem lesions surface sterilized with a 0.5% NaOCl solution. All reisolations were confirmed as M. mesosporus by culture morphology and ITS sequence data. M. mesosporus was previously reported causing disease on American beachgrass (Ammophila breviligulata Fernald) in North Carolina (1) and recently in Japan (3). The pathogen was initially placed in the genus Marasmius and reported as the cause of the disease Marasmius blight (1). Subsequent morphological observation found that the pathogen belonged in the genus Marasmiellus (2). To our knowledge, this is the first report of M. mesosporus causing Marasmiellus blight on seashore paspalum, a high-amenity turfgrass. References: (1) L. Lucas et al. Plant Dis. Rep. 55:582, 1971. (2) R. Singer et al. Mycologia 65:468, 1973. (3) S. Takehashi et al. Mycoscience 48:407, 2007.
- Published
- 2019
8. First Report of Flower Anthracnose Caused by Colletotrichum karstii in White Phalaenopsis Orchids in the United States
- Author
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I. Jadrane, Dennis E. Desjardin, Kevin D. Hyde, M. Kornievsky, L. Cai, and Zheng-Hui He
- Subjects
biology ,Hypha ,Phalaenopsis amabilis ,fungi ,food and beverages ,Plant Science ,Orange (colour) ,biology.organism_classification ,Conidium ,Botany ,Potato dextrose agar ,Petal ,Phalaenopsis ,Agronomy and Crop Science ,Mycelium - Abstract
In October 2010, a Colletotrichum species was isolated from white Phalaenopsis flowers growing in a greenhouse in San Francisco, CA. This Phalaenopsis is a common commercial orchid hybrid generated mostly likely from Phalaenopsis amabilis and P. aphrodite. The white petals showed anthracnose-like lesions where necrotic tissue is surrounded by a ring of green tissue. The green halo tissues around the necrotic tissue contain functional chloroplasts. One-centimeter disks were cut around the necrotic sites and surface-sterilized with 95% ethanol and 0.6% sodium hypochlorite. The disks were placed on potato dextrose agar (PDA) medium to establish cultures. Pure cultures were obtained by subculturing hyphal tips onto fresh PDA plates. The generated colonies had white aerial mycelia and orange conidial mass. The color of the reverse colony varies between colorless and pale orange. Microscopic observations identified the conidia as cylindrical, straight, and rounded at both ends. In addition, the conidia were approximately 15.0 to 18.0 μm long and 5.0 to 6.5 μm in diameter. These observed morphological features suggested that these isolates possessed the same characteristics as previously described for Colletotrichum karstii, a species considered as part of the C. boninense species complex (1). Four putative independent Colletotrichum isolates were recovered (DED9596, DED9597, DED9598, and DED9599). To confirm the Colletotrichum isolates as the causative pathogen, healthy white Phalaenopsis flowers (five total) in a whole plant were sprayed with a conidial suspension (approximately 1.2 × 106 conidia/ml) of the isolates and incubated at 20°C and 100% relative humidity with cycles of 16 h light and 8 h of darkness. Approximately 1 ml of conidial suspension solution was used for each flower. The plants were watered regularly and flowers were sprayed with sterile double-distilled water daily. As negative controls, five flowers in a whole plant were sprayed with water. Fifteen to twenty days after inoculation, lesions started to form on the petals sprayed with the putative Colletotrichum isolates. All controls remained healthy. The Colletotrichum-inoculated flowers remained alive and did not die as a result of the infection. This same experiment was repeated and the same results were obtained. DNA was extracted from the necrotic regions of the petals infected by the pure cultures of the four isolates and used to sequence the 18S rRNA ITS (internal transcribed spacer) region. All four isolates gave identical ITS sequences. Analysis of the obtained representative sequences (GenBank Accession No. JQ277352) suggested that the isolated pathogen as C. karstii. Using the published ITS data for the C. boninense species complex (1), a phylogenetic tree was generated via the maximum likelihood method. This created tree places the isolates in the same group as C. karstii. This type of C. karstii infection in Phalaenopsis orchid petals was not documented in the U.S. before, although it has been reported in China and Thailand (2). To our knowledge, this is the first report of infection and green island formation caused by C. karstii on orchid flower in the United States. References: (1) Damm et al. Studies in Mycology 73:1, 2012. (2) Yang et al. Cryptogamie Mycologie 32:229, 2011.
- Published
- 2019
9. Megaphylogeny resolves global patterns of mushroom evolution
- Author
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Gergely J. Szöllősi, Kurt LaButti, Claudio Angelini, William Andreopoulos, Nikolett Rácz, Brigitta Kiss, Anton Shiryaev, Karen W. Hughes, Karl Soop, Igor V. Grigoriev, Csenge Földi, Tuula Niskanen, Viktória Bense, Machiel E. Noordeloos, Bálint Dima, Sándor Kocsubé, Anna Lipzen, Alfredo Justo, Wolfgang Dämon, József Geml, Jessie K. Uehling, Robin A. Ohm, Neale L. Bougher, Pam Catcheside, Péter Finy, Anton Savchenko, Dennis E. Desjardin, Bernardo Ernesto Lechner, Peter K. Buchanan, Sajeet Haridas, Csaba Vágvölgyi, Bart Buyck, David S. Hibbett, Francis Martin, Viacheslav Spirin, Tamás Papp, Jerry A. Cooper, Otto Miettinen, Heikki Kotiranta, Clark L. Ovrebo, Vladimír Antonín, Kerrie Barry, Marisol Sánchez-García, László Albert, Zoltán Lukács, Santiago Sánchez-Ramírez, Kare Liimatainen, Mansi Chovatia, Robert Riley, Krisztina Krizsán, Dariusz Karasiński, Beatriz Ortiz-Santana, Rodham E. Tulloss, Csilla Szebenyi, Sirma Mihaltcheva, Torda Varga, Louis N. Morgado, Michal Tomšovský, János Gergő Szarkándi, Ivona Kautmanová, László Nagy, Viktor Papp, Hungarian Academy of Sciences (MTA), Eötvös Loránd University (ELTE), Clark University, University of Toronto, University of Szeged, Szent István University, Hungarian Mycological Society, United States Department of Energy, Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Moravian Museum, Western Australian Herbarium, Manaaki Whenua – Landcare Research [Lincoln], Sorbonne Université (SU), Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), State Herbarium South Australia, San Francisco State University (SFSU), National Biodiversityt Center, University of Tennessee, Polska Akademia Nauk = Polish Academy of Sciences (PAN), Slovak National Museum, Finnish Environment Institute (SYKE), Universidad de Buenos Aires (UBA), Royal Botanic Gardens, University of Oslo (UiO), Utrecht University [Utrecht], US Forest Service, University of Oklahoma (OU), University of Helsinki, University of Tartu, the Russian Academy of Sciences [Moscow, Russia] (RAS), Swedish Museum of Natural History (NRM), MTA Centre for Ecological Research, Mendel University in Brno (MENDELU), Herbarium Amanitarum Rooseveltensis, New York Botanical Garden (NYBG), University of California [Berkeley], University of California, Interactions Arbres-Microorganismes (IAM), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Momentum Program of the Hungarian Academy of Sciences LP2014/12, European Research Council (ERC) 758161, United States Department of Energy (DOE) DE-AC02-05CH11231, National Talent Program NTP-NFTO-17-B-0337, New National Excellence Program of the Ministry of Human Capacities UNKP-18-3, Straub Young Scientist scholarship from the Biological Research Centre, Hungarian Academy of Sciences, Moravian Museum by the Ministry of Culture of the Czech Republic (DKRVO) MK000094862, Nagy, László G, Manaaki Whenua Landcare Research, Sorbonne Université, Muséum National d’Histoire Naturelle (MNHN), Polish Academy of Sciences, Russian Academy of Sciences (Moscow) (RAS), Mendel University in Brno, Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Sub Molecular Microbiology, Molecular Microbiology, and Botany
- Subjects
0106 biological sciences ,0301 basic medicine ,Lineage (evolution) ,[SDV]Life Sciences [q-bio] ,champignon ,DIVERSITY ,phylogeny ,01 natural sciences ,Decomposer ,purl.org/becyt/ford/1 [https] ,PHYLOGENETIC ANALYSIS ,R PACKAGE ,1183 Plant biology, microbiology, virology ,Phylogeny ,2. Zero hunger ,Genome ,biology ,Ecology ,EXTINCTION RATES ,ADAPTIVE RADIATION ,Fungal ,EXPLOSIVE DIVERSIFICATION ,1181 Ecology, evolutionary biology ,Molecular phylogenetics ,Micología ,Genome, Fungal ,CIENCIAS NATURALES Y EXACTAS ,Evolution ,histoire évolutive ,education ,010603 evolutionary biology ,Agaricomycetes ,Article ,Ciencias Biológicas ,LIKELIHOOD ,03 medical and health sciences ,Behavior and Systematics ,Phylogenetics ,phylogénie moléculaire ,phylogénie ,purl.org/becyt/ford/1.6 [https] ,SPECIATION ,Ecology, Evolution, Behavior and Systematics ,Extinction event ,Key innovation ,Extinction ,AGARICOMYCETES ,FORMING FUNGI ,fungi ,Genetic Variation ,BINARY ,15. Life on land ,biology.organism_classification ,030104 developmental biology ,13. Climate action ,arbre phylogénétique ,MEGAPHYLOGENY ,Agaricales ,evolutionary history ,basidiomycete - Abstract
Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding. Fil: Varga, Torda. Hungarian Academy Of Sciences; Hungría Fil: Krizsán, Krisztina. Hungarian Academy Of Sciences; Hungría Fil: Földi, Csenge. Hungarian Academy Of Sciences; Hungría Fil: Dima, Bálint. Eötvös Loránd University; Hungría Fil: Sánchez-García, Marisol. Clark University; Estados Unidos Fil: Lechner, Bernardo Ernesto. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Micología y Botánica. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Micología y Botánica; Argentina Fil: Sánchez-Ramírez, Santiago. University of Toronto; Canadá Fil: Szöllosi, Gergely J.. Eötvös Loránd University; Hungría Fil: Szarkándi, János G.. University Of Szeged; Hungría Fil: Papp, Viktor. Szent István University; Hungría Fil: Albert, László. Hungarian Mycological Society; Hungría Fil: Andreopoulos, William. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Angelini, Claudio. Jardin Botanico Nacional Ma. Moscoso; República Dominicana Fil: Antonín, Vladimír. Moravian Museum; República Checa Fil: Barry, Kerrie W.. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Bougher, Neale L.. Western Australian Herbarium; Australia Fil: Buchanan, Peter. Manaaki Whenua-landcare Research; Nueva Zelanda Fil: Buyck, Bart. Muséum National d'Histoire Naturelle; Francia Fil: Bense, Viktória. Hungarian Academy Of Sciences; Hungría Fil: Catcheside, Pam. State Herbarium Of South Australia; Australia Fil: Chovatia, Mansi. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Cooper, Jerry. Manaaki Whenua-landcare Research; Nueva Zelanda Fil: Dämon, Wolfgang. Oberfeldstrasse 9; Austria Fil: Desjardin, Dennis. San Francisco State University; Estados Unidos Fil: Finy, Péter. Zsombolyai U. 56.; Hungría Fil: Geml, József. Naturalis Biodiversity Center; Países Bajos Fil: Haridas, Sajeet. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Hughes, Karen. University of Tennessee; Estados Unidos Fil: Justo, Alfredo. Clark University; Estados Unidos Fil: Karasinski, Dariusz. Polish Academy of Sciences; Polonia
- Published
- 2019
10. Bioluminescent fungi from Peninsular Malaysia—a taxonomic and phylogenetic overview
- Author
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Vikineswary Sabaratnam, Yusoff Musa, Yee Shin Tan, Dennis E. Desjardin, and Audrey L.C. Chew
- Subjects
Systematics ,Panellus ,Ecology ,biology ,Phylogenetic tree ,Botany ,Neonothopanus ,Taxonomy (biology) ,biology.organism_classification ,Roridomyces ,Mycena ,Ecology, Evolution, Behavior and Systematics ,Neonothopanus nambi - Abstract
Fifteen bioluminescent fungi recently collected from Peninsular Malaysia are analysed herein. The phylogeny of the Malaysian bioluminescent fungi and closely related taxa were evaluated with molecular data from the nuclear ribosomal large subunit (LSU), RNA polymerase 2 second largest subunit (RPB2) and internal transcribed spacers (ITS) gene regions. DNA sequences data support the circumscription of species based on the morphological species concept, but was unable to fully support the current sectional delimitation of genus Mycena. Of the 15 taxa analysed here, four are novel species described herein, viz. Mycena gombakensis, M. nocticaelum, M. coralliformis and Panellus luxfilamentus; while four taxa of Mycena sect. Calodontes were recently described as new. One species (M. noctilucens) represents a new distribution record to Peninsular Malaysia, and six species (Neonothopanus nambi, Filoboletus manipularis, P. luminescens, Roridomyces pruinosoviscidus, M. chlorophos and M. illuminans) have been previously reported. Roridomyces pruinosoviscidus is accepted as a new combination based on morphological and phylogenetic data. Culture morphology data indicate its potential for taxon delimitation as axenic cultures of each species produced unique and distinguishable characteristics. Comprehensive descriptions, illustrations and photographs are provided on basidiome and culture morphology. A key to aid in species identification, comparisons with allied species and data on basidiome and mycelium luminescence are also provided. This study gives the first report on mycelial luminescence for M. noctilucens, P. luminescens, R. pruinosoviscidus as well as all new species described herein. The reports in this study bring the total known luminescent fungi worldwide to 81 species.
- Published
- 2014
11. A ruby-colored Pseudobaeospora species is described as new from material collected on the island of Hawaii
- Author
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Don E. Hemmes, Dennis E. Desjardin, and Brian A. Perry
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Molecular Sequence Data ,Color ,010603 evolutionary biology ,01 natural sciences ,Hawaii ,03 medical and health sciences ,Large ribosomal subunit ,Botany ,Genetics ,Internal transcribed spacer ,Molecular Biology ,Ecosystem ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Islands ,Phylogenetic tree ,biology ,Tricholoma ,Cell Biology ,General Medicine ,Spores, Fungal ,030108 mycology & parasitology ,Ribosomal RNA ,biology.organism_classification ,Basidium ,Pileipellis ,Taxonomy (biology) ,Agaricales - Abstract
Pseudobaeospora wipapatiae is described as new based on material collected in alien wet habitats on the island of Hawaii. Unique features of this beautiful species include deep ruby-colored basidiomes with two-spored basidia, amyloid cheilocystidia and a hymeniderm pileipellis with abundant pileocystidia that is initially deep ruby in KOH then changes to lilac gray. Phylogenetic analysis of nuclear large ribosomal subunit sequence data suggest a close relationship between Pseudobaeospora and Tricholoma. BLAST comparisons of internal transcribed spacer and 5.8S nuclear ribosomal subunit regions sequence data reveal greatest similarity with existing sequences of Pseudobaeospora species. A comprehensive description, color photograph, illustrations of salient micromorphological features and comparisons with phenetically similar taxa are provided.
- Published
- 2014
12. The genus Mycena (Basidiomycota, Agaricales, Mycenaceae) and allied genera from Republic of São Tomé and Príncipe, West Africa
- Author
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Brian A. Perry, Dennis E. Desjardin, and Alexandra C. Cooper
- Subjects
Hydropus ,biology ,Genus ,Zoology ,Agaricales ,Taxonomy (biology) ,Plant Science ,biology.organism_classification ,Endemism ,Trogia ,Mycena ,Ecology, Evolution, Behavior and Systematics ,Mycenaceae - Abstract
Limited research has been published on the mushroom-forming basidiomycetous fungi of the oceanic islands São Tomé and Príncipe, West Africa. Based on field work in April 2006 and 2008, which generated 24 specimens of mycenoid fungi, we recognize 14 species of Mycena, and 5 species belonging to the allied genera Clitocybula, Filoboletus, Hydropus and “Trogia”. Of these, 9 species are recognized herein as new to science, viz., Mycena antennae, M. brunneoviolacea, M. longinqua, M. oboensis, M. phaeonox, M. solis, Clitocybula intervenosa, Hydropus globosporus, and H. murinus; an additional 10 species are new distribution reports for São Tomé and Príncipe. Species delimitations are based on comprehensive morphological descriptions and molecular sequence (nLSU, ITS) data. Line drawings of salient micromorphological features, colour photographs of basidiomata, comparisons with allied taxa, a key to aid in identification, and phylogenetic inferences are provided.
- Published
- 2018
13. California Mushrooms : The Comprehensive Identification Guide
- Author
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Dennis E. Desjardin, Michael G. Wood, Frederick A. Stevens, Dennis E. Desjardin, Michael G. Wood, and Frederick A. Stevens
- Subjects
- Mushrooms--California--Identification
- Abstract
Winner of the CBHL Award of Excellence California is one of the most ecologically rich and diverse regions of North America, and home to hundreds of species of mushrooms. In California Mushrooms, mycologist experts Dennis Desjardin, Michael Wood, and Fred Stevens provide over 1100 species profiles, including comprehensive descriptions and spectacular photographs. Each profile includes information on macro- and micromorphology, habitat, edibility, and comparisons with closely related species and potential look-alikes. Although the focus of the book is on mushrooms of California, over 90% of the species treated occur elsewhere, making the book useful throughout western North America. This complete reference covers everything necessary for the mushroom hunter to accurately identify over 650 species.
- Published
- 2016
14. Two species of Agaricus sect. Xanthodermatei from Thailand
- Author
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Ying Zhang, Rui-Lin Zhao, Kevin D. Hyde, Dennis E. Desjardin, Samantha C. Karunarathna, Jacques Guinberteau, Philippe Callac, Kasem Soytong, and Luis A. Parra
- Subjects
biology ,Agaricus ,Botany ,Plant Science ,biology.organism_classification ,Sect ,Ecology, Evolution, Behavior and Systematics - Published
- 2013
15. New luminescent mycenoid fungi (Basidiomycota, Agaricales) from São Paulo State, Brazil
- Author
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Dennis E, Desjardin, Brian A, Perry, and Cassius V, Stevani
- Subjects
Microscopy ,Luminescence ,DNA, Ribosomal Spacer ,Cluster Analysis ,DNA Barcoding, Taxonomic ,Agaricales ,DNA, Fungal ,Brazil ,Phylogeny - Abstract
Four species of mycenoid fungi are reported as luminescent (or putatively luminescent) on the basis of specimens collected from São Paulo State, Brazil. Two of them represent new species (Mycena oculisnymphae, Resinomycena petarensis), and two represent new reports of luminescence in previously described species (M. deformis, M. globulispora). Comprehensive descriptions, illustrations, photographs, and comparisons with phenetically similar species are provided. Sequences of nuc rDNA internal transcribed spacer regions were generated for barcoding purposes and for comparisons with similar species.
- Published
- 2016
16. Agaricus flocculosipes sp. nov., a new potentially cultivatable species from the palaeotropics
- Author
-
Dennis E. Desjardin, Samantha C. Karunarathna, Kasem Soytong, Rui-Lin Zhao, Philippe Callac, Kevin D. Hyde, Olivier Raspé, Jacques Guinberteau, SW Forestry University, Partenaires INRAE, Global Research Network Fungal Bioliogy & Mushroom Research, San Francisco State University (SFSU), Meise Botanic Garden, King Mongkut’s Institute of Technology Ladkrabang (KMITL), Unité de recherche Mycologie et Sécurité des Aliments (MycSA), Institut National de la Recherche Agronomique (INRA), and Mae Fah Luang University [Thaïlande] (MFU)
- Subjects
new species ,0106 biological sciences ,0303 health sciences ,biology ,Phylogenetic tree ,rDNA ,phylogeny ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,030308 mycology & parasitology ,taxonomy ,03 medical and health sciences ,Taxon ,Phylogenetics ,Agaricus ,Agaricus section Arvenses ,Botany ,Taxonomy (biology) ,Agaricus arvensis ,Heterothallic ,Agaricus subrufescens ,[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,Ecology, Evolution, Behavior and Systematics - Abstract
International audience; Agaricus flocculosipes is described as new from northern Thailand and Mayotte based on morphology and ITS sequence analysis. The new species is compared with similar taxa, and a comprehensive description, line drawings, and colored photographs are provided. Agaricus flocculosipes is distinguished among the species in section Agaricus flocculosipes by its relatively large sporocarps (110-180 mm in diameter), erect floccose squamules on the surface of the stipe, and relatively small basidiospores (less than 6.5 mu m long). Phylogenetic analyses based on ITS sequence data using maximum likelihood, parsimony, and Bayesian analyses all support A. Agaricus flocculosipes as being a distinct species within section Agaricus flocculosipes. The new taxon is potentially cultivatable as it is presumably heterothallic, exhibits extensive genetic diversity, and occurs in section Arvenses, a lineage that contains other edible cultivatable taxa such as Agaricus flocculosipes and Agaricus flocculosipes.
- Published
- 2012
17. Agaricus flocculosipes sp. nov., a new potentially cultivatable species from the palaeotropics
- Author
-
Rui-Lin Zhao, Kevin D. Hyde, Samantha C. Karunarathna, Dennis E. Desjardin, Olivier Raspé, Kasem Soytong, Jacques Guinberteau, and Philippe Callac
- Subjects
Ecology, Evolution, Behavior and Systematics - Published
- 2012
18. Agaricales of the Hawaiian Islands 9. Five new white-spored species from native montane wet forests
- Author
-
Don E. Hemmes and Dennis E. Desjardin
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,010603 evolutionary biology ,01 natural sciences ,Mycena ,Marasmius ,Hawaii ,Trees ,03 medical and health sciences ,Marasmiellus ,Genetics ,Agaricales ,Callistosporium ,Endemism ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,biology ,Ecology ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,Pleurocybella ,Taxonomy (biology) - Abstract
Five new species of white-spored agarics are described from native montane wet forests in the Hawaiian Islands as follows: Callistosporium vinosobrunneum, Marasmiellus hapuuarum, Marasmius koae, Mycena marasmielloides, Pleurocybella ohiae. Comprehensive descriptions, illustrations and comparisons with phenetically similar species are provided. An itemization of the 24 known putatively endemic agarics described from this unique habitat is provided.
- Published
- 2011
19. Earthstars (Geastrum, Myriostoma) of the Hawaiian Islands Including Two New Species, Geastrum litchiforme and Geastrum reticulatum(
- Author
-
Dennis E. Desjardin and Don E. Hemmes
- Subjects
Multidisciplinary ,biology ,Myriostoma ,Geastrum minimum ,Myoporum ,Ecology ,Metrosideros ,Botany ,Gasteroid fungi ,Geastrum triplex ,biology.organism_classification ,Geastrum ,Geastrum velutinum - Abstract
An updated, annotated list of earthstars found in the Hawaiian Islands is presented that includes 19 species of Geastrum and Myriostoma coliforme. Favored habitats for these gasteroid fungi include periodically wet windward coastal Casuarina groves, windward Leucaena thickets, and leeward coastal Prosopis groves. In contrast to these nonnative vegetation zones, earthstars such as Geastrum minimum, G. campestre, and G. corollinum are found also in largely native leeward montane Sophora/Myoporum forests, whereas Geastrum velutinum and G. reticulatum appear in montane native Acacia koa/Metrosideros forests. Eighty-two percent of the collections were made between September and February, although Geastrum triplex may be found earlier during the summer months. Two species, Geastrum litchiforme Desjardin & Hemmes and Geastrum reticulatum Desjardin & Hemmes, are described as new, accompanied by illustrations and comparisons with allied taxa. Geastrum xerophilum, originally published without Latin diagnosis, is formally validated. Specific collections are documented and island distribution and preferred habitats of the various species are listed. An artificial dichotomous key to aid in identification is provided.
- Published
- 2011
20. Molecular phylogenetics of porcini mushrooms (Boletus section Boletus)
- Author
-
Roy Watling, Pierre-Arthur Moreau, Jean-Marc Moncalvo, Dennis E. Desjardin, Roy E. Halling, David J. McLaughlin, Andy F. S. Taylor, Joseph F. Ammirati, Ernst E. Both, Bryn T. M. Dentinger, Terry W. Henkel, Eiji Nagasawa, and Kasem Soytong
- Subjects
Systematics ,Likelihood Functions ,biology ,Phylogenetic tree ,Boletales ,Boletus ,Bayes Theorem ,Sequence Analysis, DNA ,biology.organism_classification ,DNA, Mitochondrial ,Evolution, Molecular ,Monophyly ,Evolutionary biology ,Boletaceae ,DNA, Ribosomal Spacer ,Botany ,Molecular phylogenetics ,Genetics ,Agaricales ,DNA, Fungal ,Molecular clock ,Sequence Alignment ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics - Abstract
Porcini (Boletus section Boletus: Boletaceae: Boletineae: Boletales) are a conspicuous group of wild, edible mushrooms characterized by fleshy fruiting bodies with a poroid hymenophore that is ‘‘stuffed’’ with white hyphae when young. Their reported distribution is with ectomycorrhizal plants throughout the Northern Hemisphere. Little progress has been made on the systematics of this group using modern molecular phylogenetic tools because sampling has been limited primarily to European species and the genes employed were insufficient to resolve the phylogeny. We examined the evolutionary history of porcini by using a global geographic sampling of most known species, new discoveries from little explored areas, and multiple genes. We used 78 sequences from the fast-evolving nuclear internal transcribed spacers and are able to recognize 18 reciprocally monophyletic species. To address whether or not porcini form a monophyletic group, we compiled a broadly sampled dataset of 41 taxa, including other members of the Boletineae, and used separate and combined phylogenetic analysis of sequences from the nuclear large subunit ribosomal DNA, the largest subunit of RNA polymerase II, and the mitochondrial ATPase subunit six gene. Contrary to previous studies, our separate and combined phylogenetic analyses support the monophyly of porcini. We also report the discovery of two taxa that expand the known distribution of porcini to Australia and Thailand and have ancient phylogenetic connections to the rest of the group. A relaxed molecular clock analysis with these new taxa dates the origin of porcini to between 42 and 54 million years ago, coinciding with the initial diversification of angiosperms, during the Eocene epoch when the climate was warm and humid. These results reveal an unexpected diversity, distribution, and ancient origin of a group of commercially valuable mushrooms that may provide an economic incentive for conservation and support the hypothesis of a tropical origin of the ectomycorrhizal symbiosis.
- Published
- 2010
21. A monograph of Micropsalliota in Northern Thailand based on morphological and molecular data
- Author
-
Rui-Lin Zhao, Brian A. Perry, Dennis E. Desjardin, Kevin D. Hyde, and Kasem Soytong
- Subjects
Partial veil ,Monophyly ,Taxon ,Ecology ,Genus ,Botany ,Agaricaceae ,Germ pore ,Pileipellis ,Taxonomy (biology) ,Biology ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Abstract
Using a combination of morphological and molecular data, the genus Micropsalliota is shown to represent a monophyletic lineage in the Agaricaceae sister to Hymenagaricus. Features that distinguish the genus from Agaricus and allied genera include usually small, gracile basidiomes with a membranous partial veil, dextrinoid basidiospores with an apically thickened endosporium and lack of a germ pore, capitate or subcapitate, conspicuous cheilocystidia, and incrusted pileipellis hyphae that turn green in ammonia solution. We provide a monographic treatment of 23 taxa of Micropsalliota from Northern Thailand, of which 13 taxa represent new distribution reports for Thailand and 10 represent new taxa, including M. allantoidea, M. bifida, M. furfuracea, M. lateritia var. vinaceipes, M. megarubescens, M. megaspora, M. pusillissima, M. rubrobrunnescens var. rubrobrunnescens, M. rubrobrunnescens var. tibiicystis, and M. suthepensis. Included in this monograph are comprehensive descriptions, illustrations of micromorphological features, photographs of basidiomes, comparisons with allied species, phylogenetic trees inferring relationships amongst Thai species based on nrITS and nrLSU sequence datasets, and a key to aid in diagnosis.
- Published
- 2010
22. Geographic origins and phylogenetic affinities of the putative Hawaiian endemic Rhodocollybia laulaha
- Author
-
Gregory M. Mueller, Peter G. Avis, M.R. Keirle, Don E. Hemmes, and Dennis E. Desjardin
- Subjects
Phylogenetic tree ,Ecology ,Species distribution ,Plant Science ,Biology ,Affinities ,Ecology, Evolution, Behavior and Systematics - Published
- 2010
23. LuminescentMycena: new and noteworthy species
- Author
-
D. Jean Lodge, Dennis E. Desjardin, Eiji Nagasawa, Brian A. Perry, and Cassius V. Stevani
- Subjects
0106 biological sciences ,0301 basic medicine ,Luminescence ,biology ,Physiology ,Zoology ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Mycena ,03 medical and health sciences ,Chlorophos ,Genetics ,Agaricales ,Taxonomy (biology) ,Mycena luxaeterna ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Mycenaceae - Abstract
Seven species of Mycena are reported as luminescent, representing specimens collected in Belize, Brazil, Dominican Republic, Jamaica, Japan (Bonin Islands), Malaysia (Borneo) and Puerto Rico. Four of them represent new species (Mycena luxaeterna, M. luxarboricola, M. luxperpetua, M. silvaelucens) and three represent new reports of luminescence in previously described species (M. aff. abieticola, M. aspratilis, M. margarita). Mycena subepipterygia is synonymized with M. margarita, and M. chlorinosma is proposed as a possible synonym. Comprehensive descriptions, illustrations, photographs and comparisons with phenetically similar species are provided. A redescription of M. chlorophos, based on analyses of type specimens and recently collected topotypical material, is provided. The addition of these seven new or newly reported luminescent species of Mycena brings the total to 71 known bioluminescent species of fungi.
- Published
- 2010
24. PHYLOGENETIC PLACEMENT OF AN UNUSUAL CORAL MUSHROOM CHALLENGES THE CLASSIC HYPOTHESIS OF STRICT COEVOLUTION IN THEAPTEROSTIGMA PILOSUMGROUP ANT-FUNGUS MUTUALISM
- Author
-
Andrew B. Munkacsi, Dennis E. Desjardin, D. Jean Lodge, Bryn T. M. Dentinger, and David J. McLaughlin
- Subjects
Crops, Agricultural ,Mutualism (biology) ,Mushroom ,Ants ,Ecology ,Fungus ,Biology ,biology.organism_classification ,Biological Evolution ,Ant–fungus mutualism ,Monophyly ,Evolutionary biology ,Genetics ,Animals ,Clavarioid fungi ,Agaricales ,Symbiosis ,General Agricultural and Biological Sciences ,Domestication ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Coevolution - Abstract
The approximately 50 million-year-old fungus-farming ant mutualism is a classic example of coevolution, involving ants that subsist on asexual, fungal biomass, in turn propagating the fungus clonally through nest-to-nest transmission. Most mutualistic ants cultivate two closely related groups of gilled mushrooms, whereas one small group of ants in the genus Apterostigma cultivates a distantly related lineage comprised of the G2 and G4 groups. The G2 and G4 fungi were previously shown to form a monophyletic group sister to the thread-like coral mushroom family Pterulaceae. Here, we identify an enigmatic coral mushroom that produces both fertile and sterile fruiting structures as the closest free-living relative of the G4 fungi, challenging the monophyly of the Apterostigma-cultivated fungi for the first time. Both nonparametric bootstrap and Bayesian posterior probability support the node leading to the G4 cultivars and a free-living Pterula mushroom. These data suggest three scenarios that contradict the hypothesis of strict coevolution: (1) multiple domestications, (2) escape from domestication, (3) selection of single cultivar lineages from an ancestral mixed-fungus garden. These results illustrate how incomplete phylogenies for coevolved symbionts impede our understanding of the patterns and processes of coevolution.
- Published
- 2009
25. Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae
- Author
-
James M. Trappe, Bradley R. Kropp, M. Catherine Aime, P. Brandon Matheny, David S. Hibbett, Egon Horak, D. Jean Lodge, Kasem Soytong, Neale L. Bougher, Bart Buyck, and Dennis E. Desjardin
- Subjects
Inocybe ,Ecology ,biology ,Inocybaceae ,Biogeography ,Vicariance ,Temperate climate ,Biological dispersal ,biology.organism_classification ,Molecular clock ,Southern Hemisphere ,Ecology, Evolution, Behavior and Systematics - Abstract
Aim The ectomycorrhizal (ECM) mushroom family Inocybaceae is widespread in north temperate regions, but more than 150 species are encountered in the tropics and the Southern Hemisphere. The relative roles of recent and ancient biogeographical processes, relationships with plant hosts, and the timing of divergences that have shaped the current geographic distribution of the family are investigated. Location Africa, Australia, Neotropics, New Zealand, north temperate zone, Palaeotropics, Southeast Asia, South America, south temperate zone. Methods We reconstruct a phylogeny of the Inocybaceae with a geological timeline using a relaxed molecular clock. Divergence dates of lineages are estimated statistically to test vicariance-based hypotheses concerning relatedness of disjunct ECM taxa. A series of internal maximum time constraints is used to evaluate two different calibrations. Ancestral state reconstruction is used to infer ancestral areas and ancestral plant partners of the family. Results The Palaeotropics are unique in containing representatives of all major clades of Inocybaceae. Six of the seven major clades diversified initially during the Cretaceous, with subsequent radiations probably during the early Palaeogene. Vicariance patterns cannot be rejected that involve area relationships for Africa–Australia, Africa–India and southern South America–Australia. Northern and southern South America, Australia and New Zealand are primarily the recipients of immigrant taxa during the Palaeogene or later. Angiosperms were the earliest hosts of Inocybaceae. Transitions to conifers probably occurred no earlier than 65 Ma. Main conclusions The Inocybaceae initially diversified no later than the Cretaceous in Palaeotropical settings, in association with angiosperms. Diversification within major clades of the family accelerated during the Palaeogene in north and south temperate regions, whereas several relictual lineages persisted in the tropics. Both vicariance and dispersal patterns are detected. Species from Neotropical and south temperate regions are largely derived from immigrant ancestors from north temperate or Palaeotropical regions. Transitions to conifer hosts occurred later, probably during the Palaeogene.
- Published
- 2009
26. Durianella, a new gasteroid genus of boletes from Malaysia
- Author
-
Andrew W. Wilson, Manfred Binder, and Dennis E. Desjardin
- Subjects
0106 biological sciences ,0301 basic medicine ,Bolete ,food.ingredient ,Physiology ,Molecular Sequence Data ,Zoology ,Biology ,Hydnangium ,DNA, Ribosomal ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,food ,Agaricomycotina ,Botany ,Genetics ,DNA, Fungal ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Columella ,Malaysia ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,Taxon ,Molecular phylogenetics ,Microscopy, Electron, Scanning ,Basidiocarp ,Taxonomy (biology) ,Agaricales - Abstract
Hydnangium echinulatum, described originally from a single specimen collected in Malaysia, has been recollected, and based on morphological and molecular characters is recognized as representing a new gasteroid genus of boletes with affinities to the Boletineae, herein named Durianella. Diagnostic features include an epigeous, ovoid, pyramidal-warted, durian fruit-like basidiome with gelatinized glebal locules and a columella that turns indigo blue upon exposure, and subglobose basidiospores with long, curved, thin-walled and collapsible spines. A redescription, phylogenetic analysis and comparison with allied taxa are presented.
- Published
- 2008
27. Annotated List of Boletes and Amanita in the Hawaiian Islands
- Author
-
Don E. Hemmes and Dennis E. Desjardin
- Subjects
Amanita ,Pulveroboletus ,Chalciporus piperatus ,Bolete ,Casuarina ,biology ,Xylophilus ,Botany ,Myrtaceae ,Suillus brevipes ,Plant Science ,biology.organism_classification - Abstract
Five species of boletes , Chalciporus piperatus , Suillus brevipes , S. granulatus , S. salmonicolor , and Pulveroboletus xylophilus and three species of Amanita , A. marmorata subsp. myrtacearum , A. muscaria var. formosa , and A. manicata have been collected in the Hawaiian Islands. The boletes are associated with introduced pines and the Amanita are associated with introduced pines, Myrtaceae and Casuarina. Pulveroboletus xylophilus and Amanita manicata appear to be saprotrophic instead of mycorrhizal.
- Published
- 2008
28. MYCENA LACRIMANS, A RARE SPECIES FROM AMAZONIA, IS BIOLUMINESCENT
- Author
-
Ricardo Braga-Neto and Dennis E. Desjardin
- Subjects
biology ,Phylogenetic tree ,Amazon rainforest ,Ecology ,Rare species ,Agaricales ,Taxonomy (biology) ,Type locality ,Plant Science ,Mycena lacrimans ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Mycenaceae - Abstract
Mycena lacrimans (Agaricales, Mycenaceae) is redescribed from material collected recently near the type locality and is for the first time reported as bioluminescent. A comprehensive description, illustrations, photographs, comparison with phenetically similar species, and discussion of phylogenetic relationships are provided.
- Published
- 2007
29. Ribosomal DNA phylogenies ofCyathus: Is the current infrageneric classification appropriate?
- Author
-
Rui-Lin Zhao, Rajesh Jeewon, Dennis E. Desjardin, Kasem Soytong, and Kevin D. Hyde
- Subjects
0106 biological sciences ,0301 basic medicine ,03 medical and health sciences ,Physiology ,Genetics ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,010603 evolutionary biology ,01 natural sciences ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Published
- 2007
30. Bioluminescent Mycena species from São Paulo, Brazil
- Author
-
Dennis E. Desjardin, Marina Capelari, and Cassius Stevani
- Subjects
0106 biological sciences ,0301 basic medicine ,03 medical and health sciences ,Physiology ,Genetics ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,010603 evolutionary biology ,01 natural sciences ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Published
- 2007
31. Major clades of Agaricales: a multilocus phylogenetic overview
- Author
-
Richard W. Kerrigan, Michelle T. Seidl, Dennis E. Desjardin, P. Brandon Matheny, Matthew DeNitis, Neale L. Bougher, Timothy J. Baroni, David S. Hibbett, Zhu-Liang Yang, Joseph F. Ammirati, D. Jean Lodge, Karen W. Hughes, Valérie Hofstetter, Zai-Wei Ge, Else C. Vellinga, Duur K. Aanen, Judd M. Curtis, Andrew D. Parker, Jason C. Slot, Rytas Vilgalys, Jean-Marc Moncalvo, M. Catherine Aime, Graciela María Daniele, Bradley R. Kropp, and Lorelei L. Norvell
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Molecular Sequence Data ,Zoology ,Sequence Homology ,DNA, Ribosomal ,010603 evolutionary biology ,01 natural sciences ,Agaricomycetes ,03 medical and health sciences ,Hygrophoraceae ,Phylogenetics ,Mycorrhizae ,RNA, Ribosomal, 18S ,Genetics ,Agaricales ,Cluster Analysis ,Clade ,DNA, Fungal ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,biology ,Ecology ,Inocybaceae ,Sequence Analysis, DNA ,Cell Biology ,General Medicine ,Mitochondrial Proton-Translocating ATPases ,030108 mycology & parasitology ,biology.organism_classification ,Introns ,RNA, Ribosomal, 5.8S ,RNA, Ribosomal ,Strophariaceae ,Phylogenetic nomenclature - Abstract
An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.
- Published
- 2006
32. Global diversity and distribution of macrofungi
- Author
-
Teresa Iturriaga, Gregory M. Mueller, Kurt Hjortstam, Bart Buyck, Roy E. Halling, Leif Ryvarden, David W. Minter, Roy Watling, Karl-Henrik Larsson, Qiuxin Wu, D. Jean Lodge, Patrick R. Leacock, Mario Rajchenberg, James M. Trappe, Tom W. May, Joaquín Cifuentes, John Paul Schmit, Dennis E. Desjardin, and Scott A. Redhead
- Subjects
Ecology ,business.industry ,Biogeography ,Biodiversity ,Species diversity ,Distribution (economics) ,Biology ,Temperate climate ,Taxonomy (biology) ,Identification (biology) ,Endemism ,business ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
Data on macrofungal diversity and distribution patterns were compiled for major geographical regions of the world. Macrofungi are defined here to include ascomycetes and basidiomycetes with large, easily observed spore-bearing structures that form above or below ground. Each coauthor either provided data on a particular taxonomic group of macrofungi or information on the macrofungi of a specific geographic area. We then employed a meta-analysis to investigate species overlaps between areas, levels of endemism, centers of diversity, and estimated percent of species known for each taxonomic group for each geographic area and for the combined macrofungal data set. Thus, the study provides both a meta-analysis of current data and a gap assessment to help identify research needs. In all, 21,679 names of macrofungi were compiled. The percentage of unique names for each region ranged from 37% for temperate Asia to 72% for Australasia. Approximately 35,000 macrofungal species were estimated to be “unknown” by the contributing authors. This would give an estimated total of 56,679 macrofungi. Our compiled species list does not include data from most of S.E. Europe, Africa, western Asia, or tropical eastern Asia. Even so, combining our list of names with the estimates from contributing authors is in line with our calculated estimate of between 53,000 and 110,000 macrofungal species derived using plant/macrofungal species ratio data. The estimates developed in this study are consistent with a hypothesis of high overall fungal species diversity.
- Published
- 2006
33. Phylogenetic relationships in the gymnopoid and marasmioid fungi (Basidiomycetes, euagarics clade)
- Author
-
Dennis E. Desjardin and Andrew W. Wilson
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Molecular Sequence Data ,Sequence Homology ,DNA, Ribosomal ,010603 evolutionary biology ,01 natural sciences ,Marasmius ,03 medical and health sciences ,RNA, Ribosomal, 28S ,Marasmiellus ,Botany ,Genetics ,Gymnopus ,Mycetinis ,DNA, Fungal ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,biology ,Basidiomycota ,Physalacriaceae ,Sequence Analysis, DNA ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,Strobilurus ,Marasmiaceae ,Type species - Abstract
Three distinct lineages of gymnopoid and marasmioid fungi are recognized in parsimony and Bayesian analyses of nLSU rDNA sequences. One lin- eage contains the genera Lentinula, Rhodocollybia, Te- trapyrgos, a resurrected and redefined Mycetinis, and two unresolved clades designated /marasmiellus and /gymnopus. /marasmiellus includes the type species of Marasmiellus and is dominated by members of Gymnopus sect. Vestipedes. /gymnopus includes the type species of Gymnopus, Micromphale and Setulipes, and members of Gymnopus sect. Levipedes. A second lineage includes the genera Marasmius s.s. and Cri- nipellis and represents a redefined /marasmiaceae. A third lineage includes the genera Cylindrobasidium, Flammulina, Gloiocephala, Physalacria, Strobilurus, Xe- rula and Marasmius sect. Epiphylli and represents /physalacriaceae. One new combination in Rhodocol- lybia and four new combinations in Mycetinis are pro- posed. A discussion of the taxonomic implications re- sulting from the phylogenetic reconstruction is pre- sented.
- Published
- 2005
34. A unique ballistosporic hypogeous sequestrateLactariusfrom California
- Author
-
Dennis E. Desjardin
- Subjects
0106 biological sciences ,0301 basic medicine ,food.ingredient ,biology ,Physiology ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Zelleromyces ,Lactarius rubriviridis ,03 medical and health sciences ,Reticulate ,food ,Arcangeliella ,Polyphyly ,Lactarius ,Botany ,Genetics ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Russulales - Abstract
Lactarius rubriviridis sp. nov., characterized by hypogeous, sequestrate basidiomes with red latex, green stains, and forcibly discharged, reticulate basidiospores is described and illustrated. During the Spring, the new species forms basidiomes associated with conifers at 1400-1800 m elevation in the Sierra Nevada, and is known from two specimens collected 19 yr apart. Comparisons with the putatively polyphyletic genera Arcangeliella and Zelleromyces, and an accounting of all known members of these genera are provided.
- Published
- 2003
35. Biodiversity and phylogeny of Marasmius (Agaricales, Basidiomycota) from Madagascar
- Author
-
Brian A. Perry, Danny S. Newman, Dennis E. Desjardin, Chris L. Grace, and Jackie E. Shay
- Subjects
0301 basic medicine ,biology ,Phylogenetic tree ,Ecology ,Biodiversity ,Plant Science ,030108 mycology & parasitology ,biology.organism_classification ,Marasmius ,03 medical and health sciences ,Herbarium ,Taxon ,Agaricales ,Taxonomy (biology) ,Endemism ,Ecology, Evolution, Behavior and Systematics - Abstract
Prior to this monographic treatment, limited research on the genus Marasmius (Basidiomycota, Agaricales) had been conducted in Madagascar. Based on field work in January 2013 and January–February 2014, which generated 45 specimens of Marasmius sensu stricto, supplemented by herbarium exsiccatae and published literature, 35 species of Marasmius are documented from Madagascar. Of these, 5 species are recognized herein as new to science, viz., Marasmius madagascariensis, M. rubrobrunneus, M. dendrosetosus, M. sokola and M. tanaensis; an additional 11 species represent new distribution records for Madagascar. Species delimitations are based on comprehensive morphological descriptions and molecular sequences (ITS) data. Line drawings of salient micromorphological features, color photographs of basidiomes, comparisons with allied taxa, a key to aid in identification, and phylogenetic inferences are provided.
- Published
- 2017
36. New Porcini (Boletus sect. Boletus) from Australia and Thailand
- Author
-
Roy E. Halling, Dennis E. Desjardin, David Arora, Nigel Fechner, Bryn T. M. Dentinger, and Kasem Soytong
- Subjects
0106 biological sciences ,0301 basic medicine ,Bolete ,Boletus austroedulis ,Physiology ,Molecular Sequence Data ,Boletus ,Biology ,01 natural sciences ,Fungal Proteins ,03 medical and health sciences ,Species Specificity ,Botany ,DNA, Ribosomal Spacer ,Genetics ,Fruiting Bodies, Fungal ,DNA, Fungal ,Mycological Typing Techniques ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Boletus albobrunnescens ,Base Sequence ,Australia ,Cell Biology ,General Medicine ,Sequence Analysis, DNA ,Spores, Fungal ,biology.organism_classification ,Thailand ,030104 developmental biology ,Basidiocarp ,Pileipellis ,Taxonomy (biology) ,Pileus ,Agaricales ,010606 plant biology & botany ,Multilocus Sequence Typing - Abstract
Boletus albobrunnescens and B. austroedulis are described as new species in section Boletus from Thailand and Australia respectively. The former is easily characterized by the pure white basidiomata that stain brown. Boletus austroedulis has a gray-brown, slightly rugulose pileus with hymeniform pileipellis producing pileocystidia, and the stipe is only apically reticulate if at all. These new species represent ancient lineages inferred from prior molecular phylogenetic analyses.
- Published
- 2014
37. Four new bioluminescent taxa of Mycena sect. Calodontes from Peninsular Malaysia
- Author
-
Dennis E. Desjardin, Audrey L.C. Chew, Yusoff Musa, Yee Shin Tan, and Vikineswary Sabaratnam
- Subjects
0301 basic medicine ,Physiology ,Molecular Sequence Data ,Zoology ,Mycena ,DNA, Ribosomal ,03 medical and health sciences ,Phylogenetics ,Botany ,DNA, Ribosomal Spacer ,Genetics ,Agaricales ,Fruiting Bodies, Fungal ,DNA, Fungal ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,biology ,Base Sequence ,Malaysia ,Cell Biology ,General Medicine ,Sequence Analysis, DNA ,030108 mycology & parasitology ,Ribosomal RNA ,Spores, Fungal ,biology.organism_classification ,Sect ,030104 developmental biology ,Taxon ,Mycena pura ,Taxonomy (biology) - Abstract
Three new species and one new variety of bioluminescent Mycena collected from Peninsular Malaysia are described herein. All new species belong to Mycena sect. Calodontes in what is known as the Mycena pura complex. Comprehensive descriptions, photographs, illustrations and comparisons with phenetically similar species are provided. Molecular sequences data from the nuclear internal transcribed spacers (ITS-1 and ITS-2, including the 5.8S rRNA) were used to infer relationships within sect. Calodontes. Axenic cultures were obtained to provide data on culture morphology. This is the first published photographic documentation of bioluminescent basidiomes of members of Mycena sect. Calodontes. Also, this addition brings the total known bioluminescent fungi to 77 species.
- Published
- 2014
38. Molecular phylogeny, morphology, pigment chemistry and ecology in Hygrophoraceae (Agaricales)
- Author
-
Paul M. Kirk, A. Martyn Ainsworth, Manfred Binder, Anthony Young, Enrico Ercole, Sharon A. Cantrell, Matthew E. Smith, David Boertmann, Ellen Larsson, Alfredo Vizzini, Lorelei L. Norvell, Mahajabeen Padamsee, Daniel L. Lindner, Clark L. Ovrebo, Robert Lücking, Gareth W. Griffith, Karen W. Hughes, Andrew M. Minnis, Edgar B. Lickey, P. Brandon Matheny, Dennis E. Desjardin, A. E. Kovalenko, Thomas Læssøe, Timothy J. Baroni, M. Catherine Aime, Régis Courtecuisse, Tsutomu Hattori, József Geml, Beatriz Ortiz-Santana, Bryn T. M. Dentinger, Rytas Vilgalys, Jean-Marc Moncalvo, Scott A. Redhead, John Haight, and D. Jean Lodge
- Subjects
Hymenial morphology ,Cantharocybe ,food.ingredient ,Cuphophyllus ,Zoology ,Plant Science ,Lichenomphalia ,Pigment chemistry ,food ,Hygrophoraceae ,Nomenclatural revision ,Dictyonema ,Ecology, Evolution, Behavior and Systematics ,Ecology ,biology ,Fungi ,Hygroaster ,Porpolomopsis ,biology.organism_classification ,Phylogenetics ,Evolutionary biology ,Lamellar trama construction ,Revisionary systematics ,Gliophorus - Abstract
Molecular phylogenies using 1–4 gene regions and information on ecology, morphology and pigment chemistry were used in a partial revision of the agaric family Hygro- phoraceae. The phylogenetically supported genera we recognize here in the Hygrophoraceae based on these and previous analyses are: Acantholichen, Ampulloclitocybe, Arrhenia, Cantharellula, Cantharocybe, Chromosera, Chrysomphalina, Cora, Corella, Cuphophyllus, Cyphellostereum, Dictyonema, Eonema, Gliophorus, Haasiella, Humidicutis, Hygroaster, Hygrocybe, Hygrophorus, Lichenomphalia, Neohygrocybe, Porpolomopsis and Pseudoarmillariella. A new genus that is sister to Chromosera is described as Gloioxanthomyces. Revisions were made at the ranks of subfamily, tribe, genus, subgenus, section and subsection. We present three new subfamilies, eight tribes (five new), eight subgenera (one new, one new combination and one stat. nov.), 26 sections (five new and three new combinations and two stat. nov.) and 14 subsections (two new, two stat. nov.). Species of Chromosera, Gliophorus, Humidicutis, and Neohygrocybe are often treated within the genus Hygrocybe; we therefore provide valid names in both classification systems. We used a minimalist approach in transferring genera and creating new names and combinations. Consequently, we retain in the Hygrophoraceae the basal cuphophylloid grade comprising the genera Cuphophyllus, Ampulloclitocybe and Cantharocybe, despite weak phylogenetic support. We include Aeruginospora and Semiomphalina in Hygrophoraceae based on morphology though molecular data are lacking. The lower hygrophoroid clade is basal to Hygrophoraceae s.s., comprising the genera Aphroditeola, Macrotyphula, Phyllotopsis, Pleurocybella, Sarcomyxa, Tricholomopsis and Typhula.
- Published
- 2014
39. A new species of Calathella from Bali
- Author
-
Dennis E. Desjardin, Egon Horak, Reinhard Agerer, and Philomena Bodensteiner
- Subjects
Taxon ,Physiology ,Ecology ,Genetics ,Calathella ,Cell Biology ,General Medicine ,Biology ,biology.organism_classification ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Abstract
Calathella digitiformis sp. nov. is described and illustrated from material collected on Mt. Pohen, Bali, Indonesia. A comparison with phenetically sim- ilar taxa is provided.
- Published
- 2001
40. Always deposit voucher specimens. Open letter to the scientific community of mycologists
- Author
-
Reinhard Agerer, Joe Ammirati, Paul Blanz, Régis Courtecuisse, Dennis E. Desjardin, Walter Gams, Nils Hallenberg, Roy Halling, David L. Hawksworth, Egon Horak, Richard P. Korf, Greg M. Mueller, Franz Oberwinkler, Gerhard Rambold, Richard C. Summerbell, Dagmar Triebel, and Roy Walling
- Subjects
Voucher ,Geography ,Library science ,Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2000
41. Open letter to the scientific community of mycologists
- Author
-
Régis Courtecuisse, Dennis E. Desjardin, Roy E. Halling, Paul Blanz, Reinhard Agerer, Roy Watling, Richard C. Summerbell, Joe Ammirati, E. Horak, Gerhard Rambold, Richard P. Korf, Nils Hallenberg, Franz Oberwinkler, David L. Hawksworth, Walter Gams, Greg M. Mueller, and Dagmar Triebel
- Subjects
Systematics ,Ecology ,Soil Science ,Plant Science ,Biology ,Agricultural and Biological Sciences (miscellaneous) ,Genealogy ,Voucher ,Taxon ,Herbarium ,Taxonomy (general) ,Botany ,International Code of Nomenclature for algae, fungi, and plants ,Citation ,Organism - Abstract
To help minimise invalid publication of newly proposed scientific names of fungi, Korf (1995) provided advice on how to guarantee valid publication, and offered a few simple guidelines for authors, reviewers, and editors. He regretted that “unfortunately many of the errors are committed by highly respected mycologists, and published in thoroughly respectable journals” and emphasised that “although the ultimate responsibility for publishing correct names lies with authors, clearly reviewers and editors are shirking their duties to advise authors of such errors prior to publication.” To be published validly, names must be introduced according to requirements of the International Code of Botanical Nomenclature (Greuter et al. 1994, 2000). Since 1990, it has been compulsory to deposit the vouchers for new species and infraspecific taxa, the name-bearing types, in an herbarium or other collection. It is generally accepted that such voucher specimens should be deposited in publicly accessible reference collections such as herbaria. However, voucher collections are invariably necessary, not only when new fungi are described, but also in connection with any scientific study, whether by taxonomists, systematists, physiologists, chemists, molecular biologists, pathologists, ecologists, clinicians, etc., dealing with organisms. It is essential to preserve voucher specimens as dried material and, where possible, as permanently preserved living cultures. When none of the investigated material is preserved, it is impossible to confirm the identity of the investigated taxa. If species concepts change, it is particularly crucial to be able to re-identify the organism at a later time. There are several examples of entities once thought to be species but now revealed as species complexes, i.e., the species concept has been changed, including Pisolithus tinctorius (Burgess et al. 1995) and Paxillus involutus (Fries 1985; Hahn and Agerer 1999). In such cases, re-identification of the original material is necessary to know which organism was studied so that previous work will continue to be relevant. In recent years, molecular biological studies have had a tremendous impact on systematics, taxonomy, and ecology. DNA sequences are frequently obtained from fungal cultures. Too often there is no reference to either an exact citation of the
- Published
- 2000
42. Mycological Research News
- Author
-
Richard P. Korf, Roy E. Halling, Greg M. Müller, Walter Gams, David L. Hawksworth, Paul Blanz, Dennis E. Desjardin, Reinhard Agerer, Régis Courtecuisse, Franz Oberwinkler, Joe Ammirati, Dagmar Triebel, Roy Watling, E. Horak, Nils Hallenberg, Gerhard Rambold, and Richard C. Summerbell
- Subjects
Voucher ,Political economy ,Genetics ,Economics ,Plant Science ,Neoclassical economics ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Published
- 2000
43. A new species ofPhallusfrom São Tomé, Africa
- Author
-
Brian A. Perry and Dennis E. Desjardin
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Ecology ,Basidiomycota ,Zoology ,Cell Biology ,General Medicine ,Spores, Fungal ,030108 mycology & parasitology ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Phallales ,03 medical and health sciences ,Species Specificity ,Africa ,Genetics ,Taxonomy (biology) ,Molecular Biology ,Ecosystem ,Ecology, Evolution, Behavior and Systematics - Abstract
A new lignicolous species of phalloid fungi, discovered recently on the western African island of São Tomé, is described as Phallus drewesii. A comprehensive description, photographs and comparison with phenetically similar species are provided.
- Published
- 2009
44. Agaricales of the Hawaiian Islands. 5. The genera Rhodocollybia and Gymnopus
- Author
-
Roy E. Halling, Don E. Hemmes, and Dennis E. Desjardin
- Subjects
Systematics ,Rhodocollybia ,Collybia ,biology ,Physiology ,Cell Biology ,General Medicine ,biology.organism_classification ,Marasmius ,Sensu ,Botany ,Genetics ,Gymnopus ,Agaricales ,Key (lock) ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Abstract
Four species of Collybia sensu lato are re- ported from the Hawaiian Islands: Rhodocollybia lau- laha and Gymnopus menehune represent new species, while G. luxurians and G. subpruinosus are first re- ports. All four Hawaiian taxa are fully described, il- lustrated and compared with allied taxa. Marasmius subpruinosus, M. subcyathiformis and Clitocybe colly- bioides are formally transferred to Gymnopus. An ar- tificial dichotomous key to Hawaiian Rhodocollybia and Gymnopus is presented.
- Published
- 1999
45. Book Reviews
- Author
-
Michael A. Castellano, Michael J. Larsen, Dennis E. Desjardin, David L. Largent, and Steve Trudell
- Subjects
Physiology ,Genetics ,Cell Biology ,General Medicine ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Published
- 1998
46. Cryptomarasmius gen. nov. established in the Physalacriaceae to accommodate members of Marasmius section Hygrometrici
- Author
-
Rainier E. Schaefer, Thomas S. Jenkinson, Brian A. Perry, and Dennis E. Desjardin
- Subjects
0106 biological sciences ,0301 basic medicine ,Systematics ,Physiology ,Molecular Sequence Data ,Zoology ,010603 evolutionary biology ,01 natural sciences ,Marasmius ,DNA, Ribosomal ,03 medical and health sciences ,Phylogenetics ,RNA, Ribosomal, 16S ,Genetics ,DNA, Fungal ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,biology ,Phylogenetic tree ,Physalacriaceae ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,Marasmiaceae ,Taxon ,Taxonomy (biology) ,Agaricales - Abstract
Phylogenetic placement of the infrageneric section Hygrometrici (genus Marasmius sensu stricto) in prior molecular phylogenetic studies have been unresolved and problematical. Molecular analyses based on newly generated ribosomal nuc-LSU and 5.8S sequences resolve members of section Hygrometrici to the family Physalacriaceae. The new genus Cryptomarasmius is proposed to accommodate members of Marasmius section Hygrometrici. Fourteen species belonging to section Hygrometrici whose available type specimens bear morphological features corresponding to the new genus are formally combined in Cryptomarasmius. Taxonomic transfers are made only for taxa in which type specimens have been studied and/or representative material sequenced. Although other species placed in section Hygrometrici may belong in Cryptomarasmius, further transfers are not proposed until additional studies on type material are conducted.
- Published
- 2013
47. Taxonomic and phylogenetic re-evaluation of Mycena illuminans
- Author
-
Yee Shin Tan, Audrey L.C. Chew, Dennis E. Desjardin, Yusoff Musa, and Vikineswary Sabaratnam
- Subjects
0301 basic medicine ,Physiology ,Molecular Sequence Data ,Zoology ,DNA, Ribosomal ,03 medical and health sciences ,Mycena chlorophos ,Species Specificity ,Phylogenetics ,Genetics ,Fruiting Bodies, Fungal ,Axenic ,DNA, Fungal ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Monokaryon ,Phylogeny ,Dikaryon ,Mycena illuminans ,biology ,Phylogenetic tree ,Base Sequence ,Malaysia ,Cell Biology ,General Medicine ,Sequence Analysis, DNA ,030108 mycology & parasitology ,Spores, Fungal ,biology.organism_classification ,030104 developmental biology ,Evolutionary biology ,Taxonomy (biology) ,Agaricales - Abstract
Mycena illuminans Henn. is described and re-evaluated based on recently collected material from peninsular Malaysia, providing comprehensive descriptions, illustrations and photographs. In addition to morphological data, axenic monokaryon and dikaryon cultures were established to provide data on culture morphology and the mating system of the species. Molecular sequences data from the nuclear large subunit (LSU) gene also are presented, confirming that M. illuminans is not a synonym of Mycena chlorophos.
- Published
- 2013
48. Agaricales of the Hawaiian Islands. 3: The genusGalerinaand selected other brown-spored agarics
- Author
-
Don E. Hemmes, Dennis E. Desjardin, and Egon Horak
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,Physiology ,Line drawings ,Pholiota ,Zoology ,Descolea ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Taxon ,Genus ,Genetics ,Key (lock) ,Agaricales ,Galerina ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Abstract
Three species of brown-spored agarics are described as new: Descolea alienata, Galerina ohiarum, and Pholiota peleae. In addition, six species of Galer? ina are first reports for the Hawaiian Islands. All spe? cies are described and compared with allied taxa, and most are illustrated with line drawings. An artificial dichotomous key to Hawaiian Galerina is presented.
- Published
- 1996
49. An unusual psychrophilic aquatic agaric from Argentina
- Author
-
Lorena Martinez-Peck, Dennis E. Desjardin, and Mario Rajchenberg
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,Physiology ,Agaric ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Botany ,Genetics ,Psychrophile ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Published
- 1995
50. New species of Mycena (Basidiomycota, Agaricales) from California
- Author
-
Dennis E. Desjardin and Brian A. Perry
- Subjects
0301 basic medicine ,Systematics ,geography ,geography.geographical_feature_category ,Ecology ,Basidiomycota ,Plant Science ,030108 mycology & parasitology ,Biology ,biology.organism_classification ,Mycena ,Mycena nivicola ,03 medical and health sciences ,Taxon ,Botany ,Agaricales ,Taxonomy (biology) ,Foothills ,Ecology, Evolution, Behavior and Systematics - Abstract
Two new species of Mycena are described from California: Mycena nivicola, a spring taxon from the High Sierra Nevada and Cascade Ranges is proposed within section Hygrocyboideae, and M. bulliformis from the Coastal Ranges and Sierra Nevada Foothills is proposed in section Rubromarginatae. Both species are fully described, illustrated, and compared with similar and/or closely related taxa.
- Published
- 2016
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