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The microplastic loads in elvers of the critically endangered European eel Anguilla anguilla, sampled in the lower reaches of three English rivers, were very low (incidence: 3.3%, mean ± s.d.: 0.03 ± 0.18 particles) and did not vary with body length or between rivers. Particles were mostly black, polyolefins, fibres and fragments of size 101–200 μm. Current levels indicate a low contamination pressure locally and, consequently, management efforts might prioritise mitigating the effects of other stressors affecting the species.

Human-mediated habitat fragmentation has been proposed as the main factor driving hybridization between the sympatric migratory European shads, Alosa alosa and Alosa fallax, and the observed, substantial, decline in A. alosa. In river systems across the British Isles, shad are negatively affected by navigation weirs constructed over the past few hundred years that impede their migration. Consequently, A. alosa is now considered rare, and A. fallax threatened, in the British Isles. Understanding the impact of human disturbances on hybridization holds an important role for prioritizing both settings conservation guidelines and river restoration projects. In this study, five British populations were genotyped using twenty-four microsatellite loci, in order to measure the extent of hybridisation between A. alosa and A. fallax. Our results revealed a high level of hybridisation in British shad populations, except for one that spawns in Poole Bay where only pure A. fallax individuals were found. The extent of hybridisation varied across the rivers from 31.8% to 53.3% in the River Severn and Solway Firth, respectively. Pure A. alosa individuals were identified only in the River Tamar and Solway Firth. Overall, the results reveal that whilst genetic introgression between European Alosa spp. remains an issue for their genetic integrity, both species remain present in British waters.

Sea lamprey Petromyzon marinus is an anadromous and semelparous fish without homing behaviours. Despite being a freshwater, free-living organism for large part of their life cycle, its adulthood is spent as a parasite of marine vertebrates. In their native European range, while it is well-established that sea lampreys comprise a single nearly-panmictic population, few studies have further explored the evolutionary history of natural populations. Here, we performed the first genome-wide characterization of sea lamprey’s genetic diversity in their European natural range. The objectives were to investigate the connectivity among river basins and explore evolutionary processes mediating dispersal during the marine phase, with the sequencing 186 individuals from 8 locations spanning the North Eastern Atlantic coast and the North Sea with double-digest RAD-sequencing, obtaining a total of 30910 bi-allelic SNPs. Population genetic analyses reinforced the existence of a single metapopulation encompassing freshwater spawning sites within the north eastern Atlantic and the North Sea, though the prevalence of private alleles at northern latitudes suggested some limits to the species’ dispersal. Seascape genomics suggested a scenario where oxygen concentration and river runoffs impose spatially varying selection across their distribution range. Exploring associations with abundance of potential hosts further suggested that hake and cod could also impose selective pressures, although the nature of such putative biotic interactions was unresolved. Overall, the identification of adaptive seascapes in a panmictic anadromous species could contribute to conservation practices by providing information for restoration activities to mitigate local extinctions on freshwater sites.Sea lamprey Petromyzon marinus is an anadromous and semelparous fish without homing behaviours. Despite being a freshwater, free-living organism for large part of its life cycle, its adulthood is spent as a parasite of marine vertebrates. Here, we performed the first genome-wide characterization of sea lamprey’s genetic diversity in their European natural range. The objectives were to investigate the connectivity among river basins and explore evolutionary processes mediating dispersal during the marine phase. For that, we sequenced 186 individuals from 8 locations spanning the North-eastern Atlantic coast and the North Sea with double-digest RAD-sequencing, obtaining a total of 30910 bi-allelic SNPs. Population genomic analyses reinforced the existence of a single metapopulation encompassing freshwater spawning sites within the north-eastern Atlantic and the North Sea, though the prevalence of private alleles at northern latitudes suggested some limits to the species’ dispersal. Seascape analyses revealed candidate loci associated with the abundance of some host species and were located in a genomic region coding for variable lymphocyte receptors, an adaptive immunity tool unique to jawless vertebrates, and to MARCH proteins, a family of E3 ubiquitin ligases also involved in the regulation of immune responses. Abiotic factors (e.g., maximum phosphate, dissolved oxygen and water temperature) were significantly correlated with candidate loci associated with the myo-inositol synthesis, a pathway linked to osmoregulation, and to other genomic regions involved in organismal homeostasis. The identification of adaptive seascapes in this ancient species, especially if linked to primitive adaptive immune responses, could be relevant to understand the evolutionary pathways early in vertebrate evolution.

Management control methods for invasive crayfish remain of limited effectiveness, resulting in ongoing invasions of high ecological impact. As management programmes integrating methods to limit juvenile recruitment could reduce population abundances, the efficacy of a sterile male release technique (SMRT) based on the manual removal of male gonopods was tested here in captive and wild conditions by comparing the survival, gonopod regeneration rates and a range of reproductive metrics of sterilised versus non-sterilised males. Sterilised male survival was high, with their removed gonopods regenerating at sizes that were always smaller than those of non-sterilised males. In captive trials, while sterilised males showed significantly lower areas of spermatophore cover than non-sterilised, and less accuracy in placement, subsequent female brood size did not differ significantly between the two male groups. The number of females retaining their clutches also did not also differ significantly between these groups. Over a seven-year period in the wild, there was no evidence suggesting SMRT significantly reduced female brood sizes and clutch retention rates. Although mechanical SMRT altered the size and delivery accuracy of sterilised male gonopods, female reproductive success of invasive crayfish was unaffected. Several potential reasons for this failure of the technique were identified and require further research.

Microplastics (MPs) are small, plastic particles of various shapes, sizes and polymers. Although well studied in marine systems, their roles and importance in freshwater environments remain uncertain. Nevertheless, the restricted ranges and variable traits of freshwater fishes result in their communities being important receptors and strong bioindicators of MP pollution. Here, the current knowledge on MPs in freshwater fishes is synthesised, along with the development of recommendations for future research and sample processing. MPs are commonly ingested and passively taken up by numerous freshwater fishes, with ingestion patterns often related to individual traits (e.g. body size, trophic level) and environmental factors (e.g. local urbanisation, habitat features). Controlled exposure studies highlight a range of MP effects on fish physiology, biochemistry and behaviour that are often complex, unpredictable, species-specific, and non-linear in respect of dose-response relationships. Egestion is typically rapid and effective, although particles of a particular shape and/ or size may remain, or translocate across the intestinal wall to other organs via the blood. Regarding future studies, there is a need to understand the interactions of MP pollution with other anthropogenic stressors (e.g. warming, nutrient enrichment), with a concomitant requirement to increase the complexity of studies to enable impact assessment at population, community and ecosystem levels, and to determine whether there are consequences for processes, such as parasite transmission, where microplastics could vector parasites or increase infection susceptibility. This knowledge will determine the extent to which MP pollution can be considered a major anthropogenic stressor of freshwaters in this era of global environmental change.

Acanthocephalans are parasites with complex lifecycles that are important components of aquatic systems and are often model species for parasite-mediated host manipulation. Genetic characterization has recently resurrectedPomphorhynchus tereticollisas a distinct species fromPomphorhynchus laevis, with potential implications for fisheries management and host manipulation research. Morphological and molecular examinations of parasites from 7 English rivers across 9 fish species revealed thatP. tereticolliswas the onlyPomphorhynchusparasite present in Britain, rather thanP. laevisas previously recorded. Molecular analyses included two non-overlapping regions of the mitochondrial gene – cytochrome oxidase and generated 62 sequences for the shorter fragment (295 bp) and 74 for the larger fragment (583 bp). These were combined with 61 and 13 sequences respectively, from Genbank. A phylogenetic analysis using the two genetic regions and all the DNA sequences available forP. tereticollisidentified two distinct genetic lineages in Britain. One lineage, possibly associated with cold water tolerant fish, potentially spread to the northern parts of Britain from the Baltic regionviaa northern route across the estuarine area of what is now the North Sea during the last Glaciation. The other lineage, associated with temperate freshwater fish, may have arrived laterviathe Rhine/Thames fluvial connection during the last glaciation or early Holocene when sea levels were low. These results raise important questions on this generalist parasite and its variously environmentally adapted hosts, and especially in relation to the consequences for parasite vicariance.

Many methods of controlling invasive crayfishes have limited success because they fail to target all life stages of the population, notably by capturing only large adults that can result in increased juvenile recruitment by removing intraspecific predation. An alternative approach uses the sterile male release technique that involves the mass release of sterile males into the environment, which then mate with fertile females, resulting in unfertilised eggs and, ultimately, reduced juvenile recruitment. This does, however, rely on the sterilised males exhibiting behaviours similar to non-sterilised (entire) males and remaining attractive to females during mate choice. Post-copulatory male guarding behaviour and female promiscuity might also be affected by male sterilisation. To test for the presence of normal reproductive behaviours in sterilised male American signal crayfish Pacifastacus leniusculus, a two-stage experiment examined how sterilisation affects female mate choice and promiscuity, male hierarchical status (relative dominance) and post-copulation guarding. Sterilised males showed similar reproductive behaviours to entire males and remained as attractive to females, with no differences in relative dominance. Post-copulation, guarding behaviours were also unaffected. Females did not display promiscuous behaviour and this was unaffected by whether males were entire or sterilised. The results demonstrated that sterilised males were equally as capable as entire males of achieving dominance and winning mates. In combination, these findings suggest that male sterilisation could be an effective control technique to help reduce juvenile recruitment in wild P. leniusculus populations by reducing reproductive success.

Microplastics are a relatively new but important form of freshwater contamination that can be ingested by a range of different species, with particle counts thought to be predictable from species ecology and morphology. Here, we report levels of microplastics in a 26 μm-5 mm size range within the macroinvertebrate and fish community of a lowland river (Dorset Stour, SW England), and test the hypothesis that counts are predictable from characteristics such as feeding guild, body length and trophic position. Macroinvertebrates (n = 257, 12 taxa) and fish (n = 418, 9 species) were collected from distinct river reaches by kick sampling and rod and line angling, respectively. Batches of whole macroinvertebrates and individual fish gastrointestinal tracts were digested with 30% hydrogen peroxide before microplastic screening and FTIR polymer confirmation on a particle subset. Particles were found in 40% of pooled macroinvertebrate batches (taxa incidences: 14-75%) and 39% of fishes (species incidences: 29-47%). Dominant particle feature categories were ≤100 μm, blue/green, fragments and fibres identified as various polyolefins. Although particle counts in macroinvertebrates were highest in Ephemeroptera (mean of 0.74 particles per individual), the relationships between particle loads, batch number and guild were all non-significant. In fishes, particle counts were not significantly related to species, stomach structure, feeding guild or body length, with spatial differences also not apparent across the catchment. Individual fish particle counts were similarly not significantly associated with their trophic positions (calculated from bulk δ15N values for a subset of fishes) and parasite load of Pomphorhynchus tereticollis. Correlations between fish and macroinvertebrate particle counts within specific river reaches were also not significant. In entirety, these results indicated although loadings of microplastic particles were relatively consistent within the two communities, they were not predictable from any of their ecological or morphological characteristics.

Anthropogenic activities are increasingly threatening aquatic biodiversity, especially anadromous species. Monitoring and conservation measures are thus required to protect, maintain and restore imperilled populations. While many species can be surveyed using traditional capture and visual census techniques, species that use riverine habitats in a less conspicuous manner, such as sea lamprey Petromyzon marinus, can be more challenging to monitor. Sea lamprey larvae (ammocoetes) can spend several years in freshwater burrowed within soft sediments, inhibiting their detection and assessment. Here, we present a qPCR assay based on the detection of environmental DNA (eDNA) to identify the presence of ammocoetes burrowed in the sediment. We present an extensively validated method that ensured both speciesspecificity of the assay as well as the capacity to detect ammocoetes when abundances are low. Experiments on burrowing activity suggested that most of the DNA released into the sediment occurs during burrowing. Overall, we demonstrate this new molecular-based tool is an efficient and effective complement to traditional monitoring activities targeting larval stages of sea lampreys. Fundação para a Ciência e Tecnologia - FCT info:eu-repo/semantics/publishedVersion

Diverse and dynamic communities of ciliates and other microbes thrive in the natural environment, driving the functioning of aquatic ecosystems. Many microbes are present in very low numbers or are dormant in the 'seedbank', escaping detection in environmental surveys and, consequently, remaining underexplored. Here, we report an extraordinarily rare ciliate that was discovered after persistent exploration of freshwater anoxic sediments - Legendrea loyezae Fauré-Fremiet, 1908, a member of the Family Spathidiidae, Order Haptorida. In this study, we present the sixth account of the ciliate since 1908 and reveal its phylogenetic position with the first 18S rRNA data for the genus. We explain the key morphological features of the species, describing a remarkable behaviour in which the ciliate "shapeshifts'' due to its ability of controlled full extension and retraction of its tube-like tentacles. Our results shed light on the similarity of L. loyezae to another ciliate that was first described as Legendrea bellerophon, later moved under a new genus and named Thysanomorpha bellerophon. We question the validity of this taxonomic decision and, based on morphological characters and tentacle movement, we propose moving T. bellerophon back under Legendrea. This study demonstrates how continued and persistent exploration of natural habitats lead to the discovery of microbial communities and species.

The effects of biological invasions on native biodiversity have resulted in a range of policy and management initiatives to minimize their impacts. Although management options for invasive species include eradication and population control, empirical knowledge is limited on how different management strategies affect invasion outcomes.An individual-based model (IBM) was developed to predict how different removal (‘culling’) strategies affected the abundance and spatial distribution of a virtual, small-bodied, r-selected alien fish (based on bitterling, Rhodeus sericeus) across three types of virtual river catchments (low/intermediate/high branching tributary configurations). It was then applied to nine virtual species of varying life-history traits (r- to K-selected) and dispersal abilities (slow/intermediate/fast) to identify trade-offs between the management effort applied in the strategies (as culling rate and the number of patches it was applied to) and their predicted effects. It was also applied to a real-world example, bitterling in the River Great Ouse, England.The IBM predicted that removal efforts were more effective when applied to recently colonized patches. Increasing the cull rate (proportion of individuals removed per patch), and its spatial extent was effective at controlling the invasive population; when both were relatively high, population eradication was predicted.The characteristics of the nine virtual species were the main source of variation in their predicted abundance and spatial distribution. No species were eradicated at cull rates below 70%. Eradication at higher cull rates depended on dispersal ability; slow dispersers required lower rates than fast dispersers, and the latter rapidly recolonized at low cull rates. The trade-offs between management effort and the outcomes of the invasion were, generally, optimal when intermediate effort was applied to intermediate numbers of patches. In the Great Ouse, model predictions were that management interventions could restrict bitterling distribution by 2045 to 21% of the catchment (versus 90% occupancy without management).Synthesis and application. This IBM predicted how management efforts can be optimized against invasive fishes, providing a strong complement to risk assessments. We demonstrated that for a range of species' characteristics, culling can control and even eradicate invasive fish, but only if consistent and relatively high effort is applied.

Urban freshwaters, their sediments and resident biota are often highly susceptible to microplastic contamination from catchment-specific sources. Water velocity and spatiotemporal dynamics within the system can impact microplastic loads, while biological features may additionally impact levels within freshwater biota. Here, we investigated the spatiotemporal variations in microplastic loads collected from sediment, macroinvertebrate and fish samples from an urban watercourse (Bourne Stream) in Dorset, southwest England. Sediment particles were mostly fragments of colours (especially orange and purple) whereas microplastics in both macroinvertebrates and fishes were blue/green and fibres. Across all sample types, the dominant particle size class was ≤100 μm. Median (M) and range (R) of microplastic loads within each sample type were sediment: M = 0.06, R = 0-0.36 particles g-1; macroinvertebrates: M = 0, R = 0-4 particles per batch; and fishes: M = 1, R = 0-6 particles per individual. Sediment loads varied spatially, with the highest load in the most upstream site, whereas biotic loads did not vary across space and time. Macroinvertebrate batch loadings varied between taxa and feeding guild, with counts significantly higher in annelids but lower in herbivores. Fish counts were higher in species with true, differentiated stomachs, but with the effects of species, feeding guild and body size being non-significant. Within sites, mean microplastic loads did not correlate between sediment, macroinvertebrate and fish samples. These results suggest that sediment freshwater microplastic loadings may vary spatially but that these trends are not reflected by, or correlated to, those in the biota where ingestion varies with biological traits. Assessments of freshwater microplastic contamination must therefore consider sampling spatiotemporally and across different biotic communities to fully understand the scale of contamination, and to subsequently undertake effective mitigation steps.

1. Populations of the European shads Alosa alosa (Linnaeus, 1758) and Alosa fallax Lacépède, 1800 (Alosa spp.) are protected under legislation because of their vulnerability to human disturbances. In particular, river impoundments block their upstream migration, preventing access to spawning areas. Knowledge on the spatial extent of their spawning is important for informing conservation and river management plans. 2. Determining the spatial extent of Alosa spp. spawning is challenging. They enter rivers over a 2‐3‐month period and the species potentially migrate different distances upstream. Capture and handling can be problematic, spawning events generally occur at night, and kick‐sampling for eggs is limited to shallow water. Assessing their spatial extent of spawning could, however, incorporate non‐invasive sampling tools, such as environmental DNA (eDNA). 3. An eDNA assay for Alosa spp. was successfully developed, based on the cytochrome c oxidase subunit I gene segment and quantitative polymerase chain reaction (qPCR). Application in spring 2017 to the River Teme (River Severn catchment, western England) revealed high sensitivity in both laboratory and field trials. Field data indicated Alosa spp. spawning between May and June, with migrants mainly restricted to areas downstream of the final impoundment. 4. eDNA can thus be used as a non‐invasive sampling tool to determine the freshwater distribution of these fishes in Europe, enhancing their conservation at local and regional scales.

Assessments of fish communities tend to rely on capture‐based methods that, due to sampling biases, can underestimate actual species richness. Alternatively, environmental DNA (eDNA) based metabarcoding is a noncapture approach that infers species richness and distribution by collecting and sequencing DNA present in the ecosystem. Here, eDNA metabarcoding was applied to the lower River Severn, a highly modified and impounded river, to identify the species present in the fish assemblage. Using a universal primer for fish (12S mtDNA region), comparisons were made between the species identified as present by eDNA metabarcoding versus long‐term data available from fisheries monitoring data based on capture methods. Depending on the stringency of detection thresholds applied, the two methods detected between 15 and 25 fish species present in the river, with the eDNA metabarcoding detecting most species previously reported in the capture surveys, although with differences in the relative abundance of species between the methods. Notably, eDNA metabarcoding detected species of high conservation importance that were never sampled by capture techniques, including native European shads (Alosa spp.). Differences in the similarity indices of species detection were greater between the sampling methods than between sampling sites on each river. These results highlight the high potential of eDNA metabarcoding to provide an effective monitoring tool for biodiversity and conservation in rivers, but also indicate the need for complementary multi‐method sampling for robust estimates of fish species richness.

Background Sphaerothecum destruens is an obligate intracellular fish parasite which has been identified as a serious threat to freshwater fishes. Taxonomically, S. destruens belongs to the order Dermocystida within the class Ichthyosporea (formerly referred to as Mesomycetozoea), which sits at the animal-fungal boundary. Mitochondrial DNA (mtDNA) sequences can be valuable genetic markers for species detection and are increasingly used in environmental DNA (eDNA) based species detection. Furthermore, mtDNA sequences can be used in epidemiological studies by informing detection, strain identification and geographical spread. Methods We amplified the entire mitochondrial (mt) genome of S. destruens in two overlapping long fragments using primers designed based on the cox1, cob and nad5 partial sequences. The mt-genome architecture of S. destruens was then compared to close relatives to gain insights into its evolution. Results The complete mt-genome of Sphaerothecum destruens is 23,939 bp in length and consists of 47 genes including 21 protein-coding genes, 2 rRNA, 22 tRNA and two unidentified open reading frames. The mitochondrial genome of S. destruens is intronless and compact with a few intergenic regions and includes genes that are often missing from animal and fungal mt-genomes, such as, the four ribosomal proteins (small subunit rps13 and 14; large subunit rpl2 and 16), tatC (twin-arginine translocase component C), and ccmC and ccmF (cytochrome c maturation protein ccmC and heme lyase). Conclusions We present the first mt-genome of S. destruens which also represents the first mt-genome for the order Dermocystida. The availability of the mt-genome can assist the detection of S. destruens and closely related parasites in eukaryotic diversity surveys using eDNA and assist epidemiological studies by improving molecular detection and tracking the parasite’s spread. Furthermore, as the only representative of the order Dermocystida, its mt-genome can be used in the study of mitochondrial evolution of the unicellular relatives of animals.

Lay Summary The role of sexual selection in driving speciation is supported by correlative links between various traits under sexual selection and speciation. However, there is little evidence on the candidate genes involved in mate choice enabling speciation. Experiments on stickleback mate choice highlight the polymorphic immunogenes of the Major Histocompatibility Complex (MHC) as a true “magic trait”: the MHC drives both habitat-specific assortative mate choice and local adaptation—ultimately speciation., Adaptation to ecologically contrasting niches can lead to the formation of new species. Theoretically, this process of ecological speciation can be driven by pleiotropic “magic traits” that genetically link natural and sexual selection. To qualify as a true magic trait, the pleiotropic function of a gene must be reflected in biologically relevant mechanisms underlying both local adaptation and mate choice. The immune genes of the major histocompatibility complex (MHC) contribute to parasite resistance and also play a major role in sexual selection. Hence, the MHC may encode a candidate magic trait. Using diverging 3-spined stickleback populations from a connected lake–river habitat, we show with mate choice experiments in a flow channel that polymorphic MHC genes probably underlie assortative mating with respect to particular habitat-adapted ecotypes, potentially resulting in reproductive isolation. By manipulating olfactory cues in controlled experiments, we show that female sticklebacks employ MHC-dependent male olfactory signals to select mates with which they can achieve a habitat-specific MHC gene structure that optimally protects their offspring against local parasites. By using MHC-based olfactory signals, females thus select individuals of their own population as mates. Our results demonstrate how mate choice and parasite resistance may be functionally linked. These findings suggest that MHC genes are pleiotropic and encode a true magic trait of biologically significant effect.

Non-native species are often linked to the introduction of novel pathogens with detrimental effects on native biodiversity. Since Sphaerothecum destruens was first discovered as a fish pathogen in the United Kingdom, it has been identified as a potential threat to European fish biodiversity. Despite this parasite’s emergence and associated disease risk, there is still a poor understanding of its origin in Europe. Here, we provide the first evidence to support the hypothesis that S. destruens was accidentally introduced to Europe from China along with its reservoir host Pseudorasbora parva via the aquaculture trade. This is the first study to confirm the presence of S. destruens in China, and it has expanded the confirmed range of S. destruens to additional locations in Europe. The demographic analysis of S. destruens and its host P. parva in their native and invasive range further supported the close association of both species. This research has direct significance and management implications for S. destruens in Europe as a non-native parasite.

Disease emergence, in the last decades, has had increasingly disproportionate impacts on aquatic freshwater biodiversity. Here, we developed a new model based on Support Vector Machines (SVM) for predicting the risk of freshwater fish disease emergence in England. Following a rigorous training process and simulations, the proposed SVM model was validated and reported high accuracy rates for predicting the risk of freshwater fish disease emergence in England. Our findings suggest that the disease monitoring strategy employed in England could be successful at preventing disease emergence in certain parts of England, as areas in which there were high fish introductions were not correlated with high disease emergence (which was to be expected from the literature). We further tested our model&rsquo, s predictions with actual disease emergence data using Chi-Square tests and test of Mutual Information. The results identified areas that require further attention and resource allocation to curb future freshwater disease emergence successfully.

This paper presents the first phase in the development and validation of a simple and reliable environmental (e)DNA method using conventional PCR to detect four species of non-native freshwater fish: pumpkinseed Lepomis gibbosus, sunbleak Leucaspius delineatus, fathead minnow Pimephales promelas and topmouth gudgeon Pseudorasbora parva. The efficacy of the approach was demonstrated in indoor tank (44 l) trials in which all four species were detected within 24 h. Validation was through two field trials, in which L. gibbosus was detected 6-12 h after its introduction into outdoor experimental ponds and P. parva was successfully detected in disused fish rearing ponds where the species was known to exist. Thus, the filtration of small (30 ml) volumes of pond water was sufficient to capture fish eDNA and the approach emphasised the importance of taking multiple water samples of sufficient spatial coverage for detecting species of random or patchy distribution.

The population trophic niche of free-living species can be subdivided into smaller niches comprising individuals specialising on specific food items. The roles of parasites in creating these specialised subgroups remain unclear. Intrapopulation differences in parasite infections can develop from specialist individuals within populations. Their differences in morphology and habitat can increase their exposure to intermediate hosts via infected prey, altering their parasite fauna. However, we also suggest that parasite infections can drive this niche specialisation. Through mechanisms including parasite manipulation, altered host phenotypes, and/ or parasite-mediated competition, parasites can alter the resource availability of their hosts, altering their trophic niches. Thus, trophic niche specialisations could result from parasitism via varying influences on host traits, raising questions for future research.

Parasite manipulation of intermediate hosts evolves to increase parasite trophic transmission to final hosts, yet counter selection should act on the final host to reduce infection risk and costs. However, determining who wins this arms race and to what extent is challenging. Here, for the first time, comparative functional response analysis quantified final host consumption patterns with respect to intermediate host parasite status. Experiments used two evolutionarily experienced fish hosts and two naive hosts, and their amphipod intermediate hosts of the acanthocephalan parasite Pomphorhynchus tereticollis . The two experienced fish consumed significantly fewer infected than non-infected prey, with lower attack rates and higher handling times towards the former. Conversely, the two naive fish consumed similar numbers of infected and non-infected prey at most densities, with similar attack rates and handling times towards both. Thus, evolutionarily experienced final hosts can reduce their infection risks and costs via reduced intermediate host consumption, with this not apparent in naive hosts.

The genetic variability and population structure of introduced species in their native range are potentially important determinants of their invasion success, yet data on native populations are often poorly represented in relevant studies. Consequently, to determine the contribution of genetic structuring in the native range of topmouth gudgeon Pseudorasbora parva to their high invasion success in Europe, we used a dataset comprising of 19 native and 11 non-native populations. A total of 666 samples were analysed at 9 polymorphic microsatellite loci and sequenced for 597 bp of mitochondrial DNA. The analysis revealed three distinct lineages in the native range, of which two haplogroups were prevalent in China (100%), with a general split around the Qinling Mountains. Dating of both haplogroups closely matched past geological events. More recently, its distribution has been influenced by fish movements in aquaculture, resulting in gene flow between previously separated populations in Northern and Southern China. Their phylogeography in Europe indicate as few as two introductions events and two dispersal routes. Microsatellite data revealed native populations had higher genetic diversity than those in the invasive range, a contrast to previous studies on P. parva. This study confirms the importance of extensive sampling in both the native and non-native range of invasive species in evaluating the influence of genetic variability on invasion success.

Summary The morphology of animal body structures influences their function; intrapopulation plasticity in diet composition can occur where head morphology limits gape size. The European eel, Anguilla anguilla, a critically endangered catadromous fish, shows significant intrapopulation variations in head width, with broader headed individuals being more piscivorous. Infection of eels during their freshwater phase by Anguillicoloides crassus, an invasive nematode parasite, involves paratenic fish hosts. We tested the relationships between their infection status, head functional morphology (as head width/total length ratio; HW:TL) and the proportion of fish in diet (estimated by stable isotope mixing models) across three populations. The extent of piscivory in the diets of individual eels increased significantly as their HW:TL ratios increased. There were no significant differences between infected and uninfected eels in their total lengths and hepatic–somatic indices. However, the HW:TL ratios of infected eels were significantly higher than those of uninfected eels and, correspondingly, their diet comprised a higher proportion of fish. Logistic regression revealed that head morphology and diet were significant predictors of infection status, with models correctly assigning up to 78% of eels to their infection status. Thus, eel head functional morphology significantly influenced their probability of being infected by invasive A. crassus, most likely through increased exposure to fish paratenic hosts. Accordingly, the detrimental consequences of infections are likely to be focussed on those individuals in freshwater populations whose functional morphology enables greater specialisation in piscivory.

International audience; Outbreaks of generalist pathogens are influenced by host community structure, including population density and species diversity. Within host communities predation can influence pathogen transmission rates, prevalence and impacts. However, the influence of predation on community resilience to outbreaks of generalist pathogens is not fully understood.The role of predation on host community resilience to disease was assessed using an epidemiological multi‐host susceptible‐exposed‐infectious‐recovered model. Sphaerothecum destruens, an emerging fungal‐like generalist pathogen, was used as a model pathogen. Six cyprinid and salmonid fishes, including an asymptomatic carrier, were selected as model hosts that are known to be impacted by S. destruens, and they were used within a model host community.Pathogen release into the host community was via introduction of the asymptomatic carrier. Mortality from infection, pathogen incubation rate, and host recovery rate were set to a range of evidence‐based values in each species and were varied in secondary consumers to predict top‐down effects of infection on the resilience of a host community. Predation pressure within the fish community was varied to test its effects on infection prevalence and host survival in the community.Model predictions suggested that predation of the asymptomatic hosts by fishes in the host community was insufficient to eliminate S. destruens. Sphaerothecum destruens persisted in the community due to its rapid transmission from the asymptomatic host to susceptible host fishes. Following transmission, pathogen prevalence in the community was driven by transmission within and between susceptible host fishes, indicating low host community resilience. However, introducing low densities of a highly specific piscivorous fish into the community to pre‐date asymptomatic hosts could limit pathogen prevalence in the host community, thus increasing resilience.The model predictions indicate that whilst resilience to this generalist pathogen in the host community was low, this could be increased using management interventions. The results suggest that this model has high utility for predicting community resilience to disease and thus can be applied to other generalist parasites to determine risks of disease emergence.

Species translocation leads to disease emergence in native species of considerable economic importance. Generalist parasites are more likely to be transported, become established and infect new hosts, thus their risk needs to be evaluated. Freshwater systems are particularly at risk from parasite introductions due to the frequency of fish movements, lack of international legislative controls for non-listed pathogens and inherent difficulties with monitoring disease introductions in wild fish populations. Here we used one of the world's most invasive freshwater fish, the topmouth gudgeon, Pseudorasbora parva, to demonstrate the risk posed by an emergent generalist parasite, Sphaerothecum destruens. Pseudorasbora parva has spread to 32 countries from its native range in China through the aquaculture trade and has introduced S. destruens to at least five of these. We systematically investigated the spread of S. destruens through Great Britain and its establishment in native fish communities through a combination of phylogenetic studies of the host and parasite and a novel environmental DNA detection assay. Molecular approaches confirmed that S. destruens is present in 50% of the P. parva communities tested and was also detected in resident native fish communities but in the absence of notable histopathological changes. We identified specific P. parva haplotypes associated with S. destruens and evaluated the risk of disease emergence from this cryptic fish parasite. We provide a framework that can be applied to any aquatic pathogen to enhance detection and help mitigate future disease risks in wild fish populations.

SUMMARYPopulations of generalist species often comprise of smaller sub-sets of relatively specialized individuals whose niches comprise small sub-sets of the overall population niche. Here, the role of parasite infections in trophic niche specialization was tested using five wild fish populations infected with the non-native parasiteErgasilus briani, a copepod parasite with a direct lifecycle that infects the gill tissues of fish hosts. Infected and uninfected fishes were sampled from the same habitats during sampling events. Prevalence in the host populations ranged between 16 and 67%, with parasite abundances of up to 66 parasites per fish. Although pathological impacts included hyperplasia and localized haemorrhaging of gill tissues, there were no significant differences in the length, weight and condition of infected and uninfected fishes. Stable isotope analyses (δ13C,δ15N) revealed that the trophic niche of infected fishes, measured as standard ellipse area (i.e. the isotopic niche), was consistently and significantly smaller compared with uninfected conspecifics. These niches of infected fishes always sat within that of uninfected fish, suggesting trophic specialization in hosts. These results suggested trophic specialization is a potentially important non-lethal consequence of parasite infection that results from impaired functional traits of the host.

The anadromous sea lamprey Petromyzon marinus native range extends across the Northern Atlantic and includes much of Europe. Their complex lifecycle, involving freshwater spawning, juveniles (ammocoetes) that remain in freshwater for up to eight years, and adults migrating to sea before returning to reproduce, means native populations in Europe are threatened by multiple stressors, especially migration blockages and habitat loss. This has resulted in population declines across their European range, despite their ecological, evolutionary, and economic significance. Information on their population demography and long-term patterns are also scarce, with focus primarily on their ammocoete freshwater phase. This is inhibiting the development of biological reference points for utilization in population monitoring programs. In the Great Lakes of North America, however, P. marinus is invasive and the high damage caused to commercial fisheries resulted in their populations being controlled through a long-term, multi-method and integrated research and management approach over the last 40 years, with the development and application of a range of novel methods. Successful knowledge transfer to Europe could therefore facilitate the monitoring of threatened populations and develop new conservation actions, including modifying migration blockages to facilitate passage, implementing adult trapping programs, and applying pheromone treatments to manipulate adult movements and behaviors. This reveals the potential utility of using invasive fish populations to inform conservation practices in native ranges, and how pheromone research could further enhance fish conservation and monitoring.

The network approach is increasingly used by food-web ecologists and ecological parasitologists and has shed light on how parasite–host assemblages are organized, as well as on the role of parasites on the structure and stability of food webs. With accelerating rates of nonnative parasites being introduced around the world, there is an increasing need to predict their ecological impacts and the network approach can be helpful in this regard. There is inherent complexity in parasite invasions as parasites are highly diverse in terms of taxa and life strategies. Furthermore, they may depend on their cointroduced host to successfully overcome some crucial steps in the invasion process. Free-living introduced species often experience enemy release during invasion, which reduces the number of introduced parasites. However, introduced parasites that successfully establish may alter the structure of the recipient network through various mechanisms including parasite spill-over and spill-back, and manipulative and nonmanipulative phenotypic alterations. Despite limited literature on biological invasions in infectious food webs, some outstanding methodological issues and the considerable knowledge gaps that remain, the network approach provides valuable insights on some challenging questions, such as the link between structure and invasibility by parasites. Additional empirical data and theoretical investigations are needed to go further and the predictive power of the network approach will be improved by incorporating weighted methods that are based on trophic data collected using quantitative methods, such as stable isotope analyses.

Fungal and fungal-like parasites and the diseases which they cause have been increasingly associated with amphibians and fish population declines at a global scale. This review summarises our current knowledge of the Mesomycetozoea, a poorly-studied group of fungal-like parasites that includes emerging virulent parasites capable of causing high mortality rates in fish and amphibian populations. This review considers the potential impact of emerging parasites in this class on global aquatic biodiversity. Several aspects of the biology of mesomycetozoean parasites are associated with the potential to drive hosts to extinction, including their high virulence under certain conditions, low host specificity, and a free-living infectious stage. In addition, mesomycetozoeans are currently being introduced into novel environments and hosts via the global freshwater wildlife trade. These parasites have been linked to dramatic population declines in at least one native fish throughout Europe, and there are indications that they are already impacting amphibian populations in America and Europe. The impact of mesomycetozoeans on freshwater biodiversity is likely to increase in response to stressors such as global climate change and habitat modification. Surveillance for mesomycetozoean parasites in the field and in specimens transported in the aquatic wildlife trade needs to be increased, and a tighter control of the aquatic wildlife trade is urgently needed.

Strong selection against heterospecific sex signals, which includes both receivers and signallers, is considered to be the most significant causal factor in animal signal modification and is expected to prevent mate misinterpretation. Using a simultaneous choice bioassay, we tested the continued use of primordial sex signals in distantly related and geographically separated fish species, Pseudorasbora parva and Pimephales promelas. Here, we show that intraspecific selection pressures have not caused significant sex chemical signal differentiation between the 2 species and that mate attraction is likely due to a combination of common ancestry and an absence of divergence in allopatry. In the absence of mate discrimination among species, which have evolved for long periods of time in allopatry, reunification through species translocation could represent an overlooked risk of pheromone pollution.

SUMMARYPredicting how elevated temperatures from climate change alter host–parasite interactions requires understandings of how warming affects host susceptibility and parasite virulence. Here, the effect of elevated water temperature and parasite exposure level was tested on parasite prevalence, abundance and burden, and on fish growth, using Pomphorhynchus laevis and its fish host Squalius cephalus. At 60 days post-exposure, prevalence was higher at the elevated temperature (22 °C) than ambient temperature (18 °C), with infections achieved at considerably lower levels of exposure. Whilst parasite number was significantly higher in infected fish at 22 °C, both mean parasite weight and parasite burden was significantly higher at 18 °C. There were, however, no significant relationships between fish growth rate and temperature, parasite exposure, and the infection parameters. Thus, whilst elevated temperature significantly influenced parasite infection rates, it also impacted parasite development rates, suggesting warming could have complex implications for parasite dynamics and host resistance.

SUMMARYThe rosette agentSphaerothecum destruensis a novel pathogen, which is currently believed to have been introduced into Europe along with the introduction of the invasive fish topmouth gudgeonPseudorasbora parva(Temminck & Schlegel, 1846). Its close association withP. parvaand its wide host species range and associated host mortalities, highlight this parasite as a potential source of disease emergence in European fish species. Here, using a meta-analysis of the reportedS. destruensprevalence across all reported susceptible hosts species; we calculated host-specificity providing support thatS. destruensis a true generalist. We have applied all the available information onS. destruensand host-range to an established framework for risk-assessing non-native parasites to evaluate the risks posed byS. destruensand discuss the next steps to manage and prevent disease emergence of this generalist parasite.

Identification of a potential mechanism linking land-use change and the emergence of an infectious disease, Generalist microorganisms are the agents of many emerging infectious diseases (EIDs), but their natural life cycles are difficult to predict due to the multiplicity of potential hosts and environmental reservoirs. Among 250 known human EIDs, many have been traced to tropical rain forests and specifically freshwater aquatic systems, which act as an interface between microbe-rich sediments or substrates and terrestrial habitats. Along with the rapid urbanization of developing countries, population encroachment, deforestation, and land-use modifications are expected to increase the risk of EID outbreaks. We show that the freshwater food-web collapse driven by land-use change has a nonlinear effect on the abundance of preferential hosts of a generalist bacterial pathogen, Mycobacterium ulcerans. This leads to an increase of the pathogen within systems at certain levels of environmental disturbance. The complex link between aquatic, terrestrial, and EID processes highlights the potential importance of species community composition and structure and species life history traits in disease risk estimation and mapping. Mechanisms such as the one shown here are also central in predicting how human-induced environmental change, for example, deforestation and changes in land use, may drive emergence.

Anthropogenic activities, including the intentional releases of fish for enhancing populations (stocking), are recognized as adversely impacting the adaptive potential of wild populations. Here, the genetic characteristics of European barbel Barbus barbus were investigated using 18 populations in England, where it is indigenous to eastern‐flowing rivers and where stocking has been used to enhance these populations. Invasive populations are also present in western‐flowing rivers following introductions of translocated fish. Two genetic clusters were evident in the indigenous range, centered on catchments in northeast and southeast England. However, stocking activities, including the release of hatchery‐reared fish, have significantly reduced the genetic differentiation across the majority of this range. In addition, in smaller indigenous rivers, populations appeared to mainly comprise fish of hatchery origin. In the nonindigenous range, genetic data largely aligned to historical stocking records, corroborating information that one particular river (Kennet) in southeast England was the original source of most invasive B. barbus in England. It is recommended that these genetic outputs inform management measures to either restore or maintain the original genetic diversity of the indigenous rivers, as this should help ensure populations can maintain their ability to adapt to changing environmental conditions. Where stocking is considered necessary, it is recommended that only broodstock from within the catchment is used.

International audience; Generalist microorganisms are the agents of many emerging infectious diseases (EIDs), but their natural life cyclesare difficult to predict due to the multiplicity of potential hosts and environmental reservoirs. Among 250 knownhuman EIDs, many have been traced to tropical rain forests and specifically freshwater aquatic systems, which act asan interface between microbe-rich sediments or substrates and terrestrial habitats. Along with the rapid urbanizationof developing countries, population encroachment, deforestation, and land-use modifications are expected toincrease the risk of EID outbreaks. We show that the freshwater food-web collapse driven by land-use change has anonlinear effect on the abundance of preferential hosts of a generalist bacterial pathogen, Mycobacterium ulcerans.This leads to an increase of the pathogen within systems at certain levels of environmental disturbance. Thecomplex link between aquatic, terrestrial, and EID processes highlights the potential importance of species communitycomposition and structure and species life history traits in disease risk estimation and mapping. Mechanismssuch as the one shown here are also central in predicting how human-induced environmental change, for example,deforestation and changes in land use, may drive emergence.

SUMMARYThe sunbleak (Leucaspius delineatus), a cyprinid fish native to continental Europe and now established in the UK, is experiencing population decline which appears to be linked to the spread of the invasive Asian cyprinid (Pseudorasbora parva). A population of sunbleak in the UK has previously been identified as infected with S. destruens at low prevalence. Because Sphaerothaecum destruens has, on occasion, caused severe disease in cultured and wild salmonids the aim of this work was to establish laboratory cultures of S. destruens from sunbleak in the UK and use these cultures in challenge experiments to determine if the UK isolate of S. destruens from cyprinid species is a potential threat to Atlantic salmon (Salmo salar). The first isolation and culture of S. destruens in the UK and from a cyprinid species is described. Cultured S. destruens spores from sunbleak are infective to EPC, CHSE and FHM cells, replicating most rapidly in FHM and EPC cells. Spores can be induced to zoosporulate in water forming motile, uni-flagellated zoospores. Challenge experiments indicated the spores are able to replicate and disperse in Atlantic salmon and are associated with increased mortality (up to 90%) when injected intraperitonealy.

While mating systems vary considerably throughout the animal kingdom, smell is increasingly recognised as a common factor in successful copulation. However, the full range of olfactory- induced mating behaviours among animals is undoubtedly underestimated in comparison to visual or contact stimuli, and this underestimation suggests that our understanding of courtship rituals may be incomplete. Here, we use the highly invasive topmouth gudgeon, Pseudorasbora parva as a biological model to separate and validate the induction of headstands as courtship behaviour in many fish species. Conspecific odour was isolated using solid phase extraction (SPE) and fractionated using high-performance liquid chromatography (HPLC). Active fractions were characterised using nuclear magnetic resonance (NMR). Electrophysiological responses of pre-ovulatory females to conspecific odour were also tested via the electro-olfactogram (EOG). Results revealed that pre-ovulatory females adopted headstand body postures during exposure to nest guarding male odour (4/12) and SPE extract (5/12) but did not display during exposure to any other odour. Fractions from HPLC yielded 1 active fraction that induced headstand body postures in pre-ovulatory females (4/12). The active fraction eluted at 30–35 min and showed no response in the UV. NMR imaging revealed low intensity levels of aliphatic protons: methylene protons (CH2) at around 2 parts per million (ppm) and methin (CH) at around 3 ppm. EOG response amplitudes were approximately double in response to pre-ovulatory female odour than to odour derived from post-ovulatory females (Mann–Whitney U-test, , ). This study provides evidence of sex-specific chemical cues and responsive, adaptive sexual behaviour in P. parva and demonstrates that female display postures may be induced by chemical stimuli alone.

The efficiency of individual genetic tagging was determined by using passive integrated transponders (PIT) as a comparative conventional tagging method. Fifty-five common dace Leuciscus leuciscus were captured in the wild, PIT tagged and fin clipped (for DNA analysis). Thirty fish were recaptured on three occasions and tissue samples were collected. Using 18 microsatellite loci, 79-94% of the recaptures were correctly assigned. Experience with scoring L. leuciscus microsatellites led to more individuals correctly assigned. Allowing matches that differed by one or two alleles resulted in 100% of all recaptures successfully assigned irrespective of the observer. Reducing the set of loci to five to six loci appropriately selected did not affect the assignment rate, demonstrating that costs can be subsequently reduced. Despite their potential benefits, the application of genetic tags for teleosts has been limited. Here, it was demonstrated that genetic tagging could be applied, and a clear guideline (flowchart) is provided on how this method can be developed for teleosts and other organisms, with subsequent practical applications to ecology, evolutionary biology and conservation management.