5 results on '"Deepthi Pasumarthi"'
Search Results
2. Screening and Identification of Potential iNOS Inhibitors to Curtail Cervical Cancer Progression: an In Silico Drug Repurposing Approach
- Author
-
Ravinder Doneti, Annapurna S D, Keun Woo Lee, Smita C. Pawar, Pavan Kumar Poleboyina, Shivaji Bhanothu, Shailima Rampogu, DivyaVishambhar Kumbhakar, Deepthi Pasumarthi, Sneha Malleswari Poleboyina, and Akbar Pasha
- Subjects
Angiogenesis ,In silico ,Nitric Oxide Synthase Type II ,Uterine Cervical Neoplasms ,Antineoplastic Agents ,Bioengineering ,Applied Microbiology and Biotechnology ,Biochemistry ,chemistry.chemical_compound ,medicine ,Humans ,Enzyme Inhibitors ,Molecular Biology ,biology ,Venetoclax ,Drug discovery ,business.industry ,Cancer ,General Medicine ,medicine.disease ,Neoplasm Proteins ,Molecular Docking Simulation ,Vascular endothelial growth factor ,Nitric oxide synthase ,Drug repositioning ,chemistry ,Cancer research ,biology.protein ,Female ,Drug Screening Assays, Antitumor ,business ,Biotechnology - Abstract
Cervical cancer is the second most common cause of cancer deaths in women worldwide and remains the main reason of mortality among women of reproductive age in developing countries. Nitric oxide is involved in several physiological functions inclusive of inflammatory and immune responses. However, the function of NO in tumor biology is debatable. The inducible NOS (iNOS/NOS2) isoform is the one responsible to maintain the levels of NO, and it exhibits pleotropic effects in various cancers with concentration-dependent pro- and anti-tumor effects. iNOS triggers angiogenesis and endothelial cell migration in tumors by regulating the levels of vascular endothelial growth factor (VEGF). In drug discovery, drug repurposing involves investigations of approved drug candidates to treat various other diseases. In this study, we used anti-cancer drugs and small molecules to target iNOS and identify a potential selective iNOS inhibitor. The structures of ligands were geometrically optimized and energy minimized using Hyperchem software. Molecular docking was performed using Molegro virtual docker, and ligands were selected based on MolDock score, Rerank score, and H-bonding energy. In the study shown, venetoclax compound demonstrated excellent binding affinity to iNOS protein. This compound exhibited the lowest MolDock score and Rerank score with better H-bonding energy to iNOS. The binding efficacy of venetoclax was analyzed by performing molecular docking and molecular dynamic simulations. Multiple parameters were used to analyze the simulation trajectory, like root mean square deviation (RMSD), radius of gyration (Rg), and hydrogen bond interactions. Based on the results, venetoclax emerges to be a promising potential iNOS inhibitor to curtail cervical cancer progression.
- Published
- 2021
3. Identification of Differentially Expressed Genes in Cervical Cancer Patients by Comparative Transcriptome Analysis
- Author
-
B Sheela, Ravinder Doneti, Deepthi Pasumarthi, S D Annapurna, Mahendran Botlagunta, Smita C. Pawar, B. Vijaya Lakshmi, and Akbar Pasha
- Subjects
0301 basic medicine ,Oncology ,medicine.medical_specialty ,Candidate gene ,Article Subject ,Uterine Cervical Neoplasms ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,Internal medicine ,Databases, Genetic ,medicine ,Data Mining ,Humans ,Protein Interaction Maps ,KEGG ,Gene ,Cervical cancer ,Principal Component Analysis ,General Immunology and Microbiology ,Microarray analysis techniques ,Gene Expression Profiling ,Reproducibility of Results ,General Medicine ,medicine.disease ,Squamous carcinoma ,Gene Expression Regulation, Neoplastic ,Gene expression profiling ,030104 developmental biology ,ROC Curve ,030220 oncology & carcinogenesis ,Medicine ,Female ,Research Article - Abstract
Cervical cancer is one of the most malignant reproductive diseases seen in women worldwide. The identification of dysregulated genes in clinical samples of cervical cancer may pave the way for development of better prognostic markers and therapeutic targets. To identify the dysregulated genes (DEGs), we have retrospectively collected 10 biopsies, seven from cervical cancer patients and three from normal subjects who underwent a hysterectomy. Total RNA isolated from biopsies was subjected to microarray analysis using the human Clariom D Affymetrix platform. Based on the results of principal component analysis (PCA), only eight samples are qualified for further studies; GO and KEGG were used to identify the key genes and were compared with TCGA and GEO datasets. Identified genes were further validated by quantitative real-time PCR and receiver operating characteristic (ROC) curves, and the highest Youden index was calculated in order to evaluate cutoff points (COPs) that allowed distinguishing of tissue samples of cervical squamous carcinoma patients from those of healthy individuals. By comparative microarray analysis, a total of 108 genes common across the six patients’ samples were chosen; among these, 78 genes were upregulated and 26 genes were downregulated. The key genes identified were SPP1, LYN, ARRB2, COL6A3, FOXM1, CCL21, TTK, and MELK. Based on their relative expression, the genes were ordered as follows: TTK > ARRB2 > SPP1 > FOXM1 > LYN > MELK > CCL21 > COL6A3; this generated data is in sync with the TCGA datasets, except for ARRB2. Protein-protein interaction network analysis revealed that TTK and MELK are closely associated with SMC4, AURKA, PLK4, and KIF18A. The candidate genes SPP1, FOXM1, LYN, COL6A3, CCL21, TTK and MELK at mRNA level, emerge as promising candidate markers for cervical cancer prognosis and also emerge as potential therapeutic drug targets.
- Published
- 2021
4. Inhibition of Inducible Nitric Oxide Synthase (iNOS) by Andrographolide and In Vitro Evaluation of Its Antiproliferative and Proapoptotic Effects on Cervical Cancer
- Author
-
Annapurna S D, Heena S K, Preethi Basavaraju, Akbar Pasha, Gangappa Dharmapuri, Pavan Kumar Poleboyina, Divya Vishambhar Kumbhakar, I Arnold Emeson, Smita C. Pawar, Pavani Soujanya, Deepthi Pasumarthi, Vijayalaxmi Bodiga, Kiran Kumar, and Ravinder Doneti
- Subjects
Adult ,Aging ,Programmed cell death ,Cell cycle checkpoint ,Article Subject ,Cell Survival ,Andrographolide ,Nitric Oxide Synthase Type II ,Uterine Cervical Neoplasms ,Apoptosis ,Molecular Dynamics Simulation ,Ligands ,Biochemistry ,Gene Expression Regulation, Enzymologic ,chemistry.chemical_compound ,Western blot ,Downregulation and upregulation ,medicine ,Animals ,Humans ,Cytotoxicity ,Cell Proliferation ,Wound Healing ,QH573-671 ,biology ,medicine.diagnostic_test ,Chemistry ,Cell Cycle ,Reproducibility of Results ,Cell Biology ,General Medicine ,Middle Aged ,Gene Expression Regulation, Neoplastic ,Molecular Docking Simulation ,Nitric oxide synthase ,HEK293 Cells ,biology.protein ,Cancer research ,Thermodynamics ,Female ,Diterpenes ,Cytology ,Research Article ,HeLa Cells - Abstract
This work is aimed at investigating the expression levels of inducible nitric oxide synthase (iNOS) in cervical cancer and identifying a potential iNOS inhibitor. The data mining studies performed advocated iNOS to be a promising biomarker for cancer prognosis, as it is highly overexpressed in several malignant cancers. The elevated iNOS was found to be associated with poor survival and increased tumor aggressiveness in cervical cancer. Immunohistochemical and RT-PCR investigations of iNOS showed significant upregulation of endogenous iNOS expression in the cervical tumor samples, thus making iNOS a potent target for decreasing tumor inflammation and aggressiveness. Andrographolide, a plant-derived diterpenoid lactone, is widely reported to be effective against infections and inflammation, causing no adverse side effects on humans. In the current study, we investigated the effect of andrographolide on the prognostic value of iNOS expression in cervical cancer, which has not been reported previously. The binding efficacy of andrographolide was analyzed by performing molecular docking and molecular dynamic simulations. Multiple parameters were used to analyze the simulation trajectory, like root mean square deviation (RMSD), torsional degree of freedom, protein-root mean square fluctuations (P-RMSF), ligand RMSF, total number of intramolecular hydrogen bonds, secondary structure elements (SSE) of the protein, and protein complex with the time-dependent functions of MDS. Ligand-protein interactions revealed binding efficacy of andrographolide with tryptophan amino acid of iNOS protein. Cancer cell proliferation, cell migration, cell cycle analysis, and apoptosis-mediated cell death were assessed in vitro, post iNOS inhibition induced by andrographolide treatment (demonstrated by Western blot). Results. Andrographolide exhibited cytotoxicity by inhibiting the in vitro proliferation of cervical cancer cells and also abrogated the cancer cell migration. A significant increase in apoptosis was observed with increasing andrographolide concentration, and it also induced cell cycle arrest at G1-S phase transition. Our results substantiate that andrographolide significantly inhibits iNOS expression and exhibits antiproliferative and proapoptotic effects on cervical cancer cells.
- Published
- 2021
5. Screening and Identification of Potential iNOS Inhibitors to Curtail Cervical Cancer Progression: An in-Silico Drug Repurposing Approach
- Author
-
PAVAN KUMAR POLEBOYINA, SMITA C PAWAR, AKBAR PASHA, RAVINDER DONETI, SNEHA MALLESWARI POLEBOYINA, SHIVAJI BANOTHU, Deepthi pasumarthi, Annapurna SD, and Kumbhakar Divya
- Abstract
Cervical cancer is the second most common cause of cancer deaths in women worldwide and remains the main reason of mortality amongst women of reproductive age in developing countries. Nitric oxide is involved in several physiological functions inclusive of inflammatory and immune responses. However, the function of NO in tumor biology is debatable. The inducibleNOS (iNOS/NOS2) isoform is the oneresponsible to maintain the levels of NO and it exhibits pleotropic effects in various cancer with concentration-dependent pro- and anti-tumor effects.NOS2 triggers angiogenesis and endothelial cell migration in tumors by regulating the levels of vascular endothelial growth factor (VEGF). In drug discovery, drug repurposing involves investigations of approved drug candidates to treat various other diseases. In this study, we used FDA-approved anti-cancer drugs and small molecules to target iNOS and identify a potential selective iNOS inhibitor. The structures of ligands were geometrically optimized, and energy minimized using Hyperchem software. Molecular docking was performed using Molegro virtual docker and ligands were selected based on MolDock score,Rerank score, and H-bonding energy. In the study showed 4 compounds, Degarelix, Goserelin, Triptorelin pamoate, and venetoclax demonstrated excellent binding affinity to NOS2 protein. These compounds exhibited the lowest MolDock score, Rerank score, with better H-bonding energy to NOS2. Based on the results theses ligands project to be promising potential NOS2 inhibitors to curtail cervical cancer progression
- Published
- 2021
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.