8 results on '"Deeley MA"'
Search Results
2. Impact of and Response to Cyberattacks in Radiation Oncology.
- Author
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Nelson CJ, Soisson ET, Li PC, Lester-Coll NH, Gagne H, Deeley MA, Anker CJ, Roy LA, and Wallace HJ
- Abstract
Cyberattacks on health care facilities are increasing and significantly affecting health care delivery throughout the world. The recent cyberattack on our hospital-based radiation facility exposed vulnerabilities of radiation oncology systems and highlighted the dependence of radiation treatment on integrated and complex radiation planning, delivery and verification systems. After the cyberattack on our health care facility, radiation oncology staff reconstructed patient information, schedules, and radiation plans from existing paper records and physicians developed a system to triage patients requiring immediate transfer of radiation treatment to nearby facilities. Medical physics and hospital information technology collaborated to restore services without access to the system backup or network connectivity. Ultimately, radiation treatments resumed incrementally as systems were restored and rebuilt. The experiences and lessons learned from this response were reviewed. The successes and shortcomings were incorporated into recommendations to provide guidance to other radiation facilities in preparation for a possible cyberattack. Our response and recommendations are intended to serve as a starting point to assist other facilities in cybersecurity preparedness planning. Because there is no one-size-fits-all response, each department should determine its specific vulnerabilities, risks, and available resources to create an individualized plan., (© 2022 The Authors.)
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- 2022
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3. Are you ready for a cyberattack?
- Author
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Pinkham DW, Sala IM, Soisson ET, Wang B, and Deeley MA
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- 2021
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4. Development of Rapid Response Plan for Radiation Oncology in Response to Cyberattack.
- Author
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Nelson CJ, Lester-Coll NH, Li PC, Gagne H, Anker CJ, Deeley MA, and Wallace HJ
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- 2020
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5. Segmentation editing improves efficiency while reducing inter-expert variation and maintaining accuracy for normal brain tissues in the presence of space-occupying lesions.
- Author
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Deeley MA, Chen A, Datteri RD, Noble J, Cmelak A, Donnelly E, Malcolm A, Moretti L, Jaboin J, Niermann K, Yang ES, Yu DS, and Dawant BM
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- Algorithms, Brain pathology, Brain radiation effects, Humans, Randomized Controlled Trials as Topic, Tomography, X-Ray Computed, Brain cytology, Brain Neoplasms diagnostic imaging, Brain Neoplasms radiotherapy, Image Processing, Computer-Assisted methods, Radiotherapy Planning, Computer-Assisted methods
- Abstract
Image segmentation has become a vital and often rate-limiting step in modern radiotherapy treatment planning. In recent years, the pace and scope of algorithm development, and even introduction into the clinic, have far exceeded evaluative studies. In this work we build upon our previous evaluation of a registration driven segmentation algorithm in the context of 8 expert raters and 20 patients who underwent radiotherapy for large space-occupying tumours in the brain. In this work we tested four hypotheses concerning the impact of manual segmentation editing in a randomized single-blinded study. We tested these hypotheses on the normal structures of the brainstem, optic chiasm, eyes and optic nerves using the Dice similarity coefficient, volume, and signed Euclidean distance error to evaluate the impact of editing on inter-rater variance and accuracy. Accuracy analyses relied on two simulated ground truth estimation methods: simultaneous truth and performance level estimation and a novel implementation of probability maps. The experts were presented with automatic, their own, and their peers' segmentations from our previous study to edit. We found, independent of source, editing reduced inter-rater variance while maintaining or improving accuracy and improving efficiency with at least 60% reduction in contouring time. In areas where raters performed poorly contouring from scratch, editing of the automatic segmentations reduced the prevalence of total anatomical miss from approximately 16% to 8% of the total slices contained within the ground truth estimations. These findings suggest that contour editing could be useful for consensus building such as in developing delineation standards, and that both automated methods and even perhaps less sophisticated atlases could improve efficiency, inter-rater variance, and accuracy.
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- 2013
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6. Evaluation of multiple-atlas-based strategies for segmentation of the thyroid gland in head and neck CT images for IMRT.
- Author
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Chen A, Niermann KJ, Deeley MA, and Dawant BM
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- Humans, Laryngeal Neoplasms diagnostic imaging, Laryngeal Neoplasms radiotherapy, Tongue Neoplasms diagnostic imaging, Tongue Neoplasms radiotherapy, Head and Neck Neoplasms diagnostic imaging, Head and Neck Neoplasms radiotherapy, Image Processing, Computer-Assisted methods, Radiotherapy, Intensity-Modulated methods, Thyroid Gland diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
Segmenting the thyroid gland in head and neck CT images is of vital clinical significance in designing intensity-modulated radiation therapy (IMRT) treatment plans. In this work, we evaluate and compare several multiple-atlas-based methods to segment this structure. Using the most robust method, we generate automatic segmentations for the thyroid gland and study their clinical applicability. The various methods we evaluate range from selecting a single atlas based on one of three similarity measures, to combining the segmentation results obtained with several atlases and weighting their contribution using techniques including a simple majority vote rule, a technique called STAPLE that is widely used in the medical imaging literature, and the similarity between the atlas and the volume to be segmented. We show that the best results are obtained when several atlases are combined and their contributions are weighted with a measure of similarity between each atlas and the volume to be segmented. We also show that with our data set, STAPLE does not always lead to the best results. Automatic segmentations generated by the combination method using the correlation coefficient (CC) between the deformed atlas and the patient volume, which is the most accurate and robust method we evaluated, are presented to a physician as 2D contours and modified to meet clinical requirements. It is shown that about 40% of the contours of the left thyroid and about 42% of the right thyroid can be used directly. An additional 21% on the left and 24% on the right require only minimal modification. The amount and the location of the modifications are qualitatively and quantitatively assessed. We demonstrate that, although challenged by large inter-subject anatomical discrepancy, atlas-based segmentation of the thyroid gland in IMRT CT images is feasible by involving multiple atlases. The results show that a weighted combination of segmentations by atlases using the CC as the similarity measure slightly outperforms standard combination methods, e.g. the majority vote rule and STAPLE, as well as methods selecting a single most similar atlas. The results we have obtained suggest that using our contours as initial contours to be edited has clinical value.
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- 2012
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7. Comparison of manual and automatic segmentation methods for brain structures in the presence of space-occupying lesions: a multi-expert study.
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Deeley MA, Chen A, Datteri R, Noble JH, Cmelak AJ, Donnelly EF, Malcolm AW, Moretti L, Jaboin J, Niermann K, Yang ES, Yu DS, Yei F, Koyama T, Ding GX, and Dawant BM
- Subjects
- Automation, Brain diagnostic imaging, Brain Neoplasms diagnostic imaging, Brain Neoplasms radiotherapy, Humans, Magnetic Resonance Imaging, Radiotherapy, Intensity-Modulated, Time Factors, Tomography, X-Ray Computed, Brain pathology, Brain Neoplasms diagnosis, Brain Neoplasms pathology, Expert Testimony, Image Processing, Computer-Assisted methods
- Abstract
The purpose of this work was to characterize expert variation in segmentation of intracranial structures pertinent to radiation therapy, and to assess a registration-driven atlas-based segmentation algorithm in that context. Eight experts were recruited to segment the brainstem, optic chiasm, optic nerves, and eyes, of 20 patients who underwent therapy for large space-occupying tumors. Performance variability was assessed through three geometric measures: volume, Dice similarity coefficient, and Euclidean distance. In addition, two simulated ground truth segmentations were calculated via the simultaneous truth and performance level estimation algorithm and a novel application of probability maps. The experts and automatic system were found to generate structures of similar volume, though the experts exhibited higher variation with respect to tubular structures. No difference was found between the mean Dice similarity coefficient (DSC) of the automatic and expert delineations as a group at a 5% significance level over all cases and organs. The larger structures of the brainstem and eyes exhibited mean DSC of approximately 0.8-0.9, whereas the tubular chiasm and nerves were lower, approximately 0.4-0.5. Similarly low DSCs have been reported previously without the context of several experts and patient volumes. This study, however, provides evidence that experts are similarly challenged. The average maximum distances (maximum inside, maximum outside) from a simulated ground truth ranged from (-4.3, +5.4) mm for the automatic system to (-3.9, +7.5) mm for the experts considered as a group. Over all the structures in a rank of true positive rates at a 2 mm threshold from the simulated ground truth, the automatic system ranked second of the nine raters. This work underscores the need for large scale studies utilizing statistically robust numbers of patients and experts in evaluating quality of automatic algorithms.
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- 2011
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8. Combining registration and active shape models for the automatic segmentation of the lymph node regions in head and neck CT images.
- Author
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Chen A, Deeley MA, Niermann KJ, Moretti L, and Dawant BM
- Subjects
- Automation, Humans, Time Factors, Head and Neck Neoplasms diagnostic imaging, Image Processing, Computer-Assisted methods, Lymph Nodes diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
Purpose: Intensity-modulated radiation therapy (IMRT) is the state of the art technique for head and neck cancer treatment. It requires precise delineation of the target to be treated and structures to be spared, which is currently done manually. The process is a time-consuming task of which the delineation of lymph node regions is often the longest step. Atlas-based delineation has been proposed as an alternative, but, in the authors' experience, this approach is not accurate enough for routine clinical use. Here, the authors improve atlas-based segmentation results obtained for level II-IV lymph node regions using an active shape model (ASM) approach., Methods: An average image volume was first created from a set of head and neck patient images with minimally enlarged nodes. The average image volume was then registered using affine, global, and local nonrigid transformations to the other volumes to establish a correspondence between surface points in the atlas and surface points in each of the other volumes. Once the correspondence was established, the ASMs were created for each node level. The models were then used to first constrain the results obtained with an atlas-based approach and then to iteratively refine the solution., Results: The method was evaluated through a leave-one-out experiment. The ASM- and atlas-based segmentations were compared to manual delineations via the Dice similarity coefficient (DSC) for volume overlap and the Euclidean distance between manual and automatic 3D surfaces. The mean DSC value obtained with the ASM-based approach is 10.7% higher than with the atlas-based approach; the mean and median surface errors were decreased by 13.6% and 12.0%, respectively., Conclusions: The ASM approach is effective in reducing segmentation errors in areas of low CT contrast where purely atlas-based methods are challenged. Statistical analysis shows that the improvements brought by this approach are significant.
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- 2010
- Full Text
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