Search

The rumen is a complex ecosystem that plays a critical role in our efforts to improve feed efficiency of cattle and reduce their environmental impacts. Sequencing of the 16S rRNA gene provides a powerful tool to survey the bacterial and some archaeal. Oral stomach tubing a cow to collect a rumen sample is a rapid, cost-effective alternative to rumen cannulation for acquiring rumen samples. In this study, we determined how sampling method (oral stomach tubing vs cannulated grab sample), as well as rumen fraction type (liquid vs solid), bias the bacterial and archaeal communities observed. Liquid samples were further divided into liquid strained through cheesecloth and unstrained. Fecal samples were also collected to determine how these differed from the rumen sample types. The abundance of major archaeal communities was not different at the family level in samples acquired via rumen cannula or stomach tube. In contrast to the stable archaeal communities across sample type, the bacterial order WCHB1-41 (phylum Kiritimatiellaeota) was enriched in both liquid strained and unstrained samples as well as the family Prevotellaceae as compared to grab samples. However, these liquid samples had significantly lower abundance of Lachnospiraceae compared with grab samples. Solid samples strained of rumen liquid most closely resembled the grab samples containing both rumen liquid and solid particles obtained directly from the rumen cannula; therefore, inclusion of particulate matter is important for an accurate representation of the rumen bacteria. Stomach tube samples were the most variable and were most representative of the liquid phase. In comparison with a grab sample, stomach tube samples had significantly lower abundance of Lachnospiraceae, Fibrobacter and Treponema. Fecal samples did not reflect the community composition of the rumen, as fecal samples had significantly higher relative abundance of Ruminococcaceae and significantly lower relative abundance of Lachnospiraceae compared with grab samples.

ObjectiveProphylactic supplementation of psyllium husk is recommended to enhance passage of ingested sand from the gastrointestinal tracts of horses. We hypothesized that psyllium supplementation would increase fecal sand passage and favorably alter bacterial populations in the hindgut. Six yearlings and six mature mares were fed a psyllium supplement in the diet daily for seven days. Voluntarily-voided feces were collected over the course of 29 days, prior, during, and after treatment. Feces were analyzed for acid detergent fiber (ADF) and acid detergent insoluble ash analyses. Microbial DNA was also isolated, and the V4 region of the 16S ribosomal RNA gene was PCR-amplified and sequenced using MiSeq technology.ResultsFecal ADF concentration was greater in adults while silica concentration was greater in yearlings. Mature mare fecal ADF decreased during and just after supplementation but thereafter increased. No changes in silica levels were noted in either group over time. Fecal microbial population phylogenetic diversity was greatest mid-supplementation and lowest at 11 days post-supplementation. Functional profiles of the microbial communities presented some benefits for psyllium supplementation. These findings provide compelling evidence for further detailed studies of prophylactic psyllium supplementation.

Antimicrobial resistance is a global public health concern, and livestock play a significant role in selecting for resistance and maintaining such reservoirs. Here we study the succession of dairy cattle resistome during early life using metagenomic sequencing, as well as the relationship between resistome, gut microbiota, and diet. In our dataset, the gut of dairy calves serves as a reservoir of 329 antimicrobial resistance genes (ARGs) presumably conferring resistance to 17 classes of antibiotics, and the abundance of ARGs declines gradually during nursing. ARGs appear to co-occur with antibacterial biocide or metal resistance genes. Colostrum is a potential source of ARGs observed in calves at day 2. The dynamic changes in the resistome are likely a result of gut microbiota assembly, which is closely associated with diet transition in dairy calves. Modifications in the resistome may be possible via early-life dietary interventions to reduce overall antimicrobial resistance.

While the environmental impacts of livestock production, such as greenhouse gas emissions and water usage, have been studied for a variety of US livestock production systems, the environmental impact of US sheep production is still unknown. A cradle-to-farm gate life cycle assessment (LCA) was conducted according to international standards (ISO 14040/44), analyzing the impacts of CS representing five different meat sheep production systems in California, and focusing on carbon footprint (carbon dioxide equivalents, CO2e) and irrigated water usage (metric ton, MT). This study is the first to look specifically at the carbon footprint of the California sheep industry and consider both wool and meat production across the diverse sheep production systems within California. This study also explicitly examined the carbon footprint of hair sheep as compared with wooled sheep production. Data were derived from producer interviews and literature values, and California-specific emission factors were used wherever possible. Flock outputs studied included market lamb meat, breeding stock, 2-d-old lambs, cull adult meat, and wool. Four different methane prediction models were examined, including the current IPCC tier 1 and 2 equations, and an additional sensitivity analysis was conducted to examine the effect of a fixed vs. flexible coefficient of gain (kg) in mature ewes on carbon footprint per ewe. Mass, economic, and protein mass allocation were used to examine the impact of allocation method on carbon footprint and water usage, while sensitivity analyses were used to examine the impact of ewe replacement rate (% of ewe flock per year) and lamb crop (lambs born per ewe bred) on carbon footprint per kilogram market lamb. The carbon footprint of market lamb production ranged from 13.9 to 30.6 kg CO2e/kg market lamb production on a mass basis, 10.4 to 18.1 kg CO2e/kg market lamb on an economic basis, and 6.6 to 10.1 kg CO2e/kg market lamb on a protein mass basis. Enteric methane (CH4) production was the largest single source of emissions for all CS, averaging 72% of total emissions. Emissions from feed production averaged 22% in total, primarily from manure emissions credited to feed. Whole-ranch water usage ranged from 2.1 to 44.8 MT/kg market lamb, almost entirely from feed production. Overall results were in agreement with those from meat-focused sheep systems in the United Kingdom as well as beef raised under similar conditions in California.

Mouse models offer unique opportunities to study mammary gland biology and lactation. Phenotypes within the mammary glands, especially those caused by genetic modification, often arise during lactation, and their study requires the collection of adequate volumes of milk. We describe two approaches for collecting milk from lactating mice. Both methods are inexpensive, are easy to use in the laboratory or classroom, are non-invasive, and yield adequate volumes of milk for subsequent analyses.

An animal’s feed intake, and how well that feed is digested, determine the feed’s production performance. The in vitro gas production technique is a relatively simple method for evaluating feeds, as large numbers of samples can be incubated and analyzed at the same time. This method has been applied successfully at UC Davis for a variety of purposes in feed evaluation, including calculating organic matter digestibility, the metabolizable energy of feeds and kinetics of their fermentation; determining how feed value is affected by added fat, anti-nutritive factors and rumen modifiers; quantifying the energy value of feed mixtures (rations); monitoring microbial change in the rumen; synchronizing nutrient digestion; and selecting forage nutrient targets for agricultural biotechnology. More than half of the nutrients consumed by ruminant animals leave the animal unutilized and undigested, and are excreted in feces, urine and gases. The in vitro gas production method can be used to examine animal waste components that impact the environment and develop appropriate mitigations.

Normal adiposity occurs in humans and mice deficient of adipose lipoprotein lipase (LPL) activity. Subnormal adiposity found in LPL-deficient cats is indicative of limited de novo synthesis of fatty acids (FAs). In 14 LPL-deficient (3.0 [+ or -] 0.1 kg) and 8 normal (3.7 [+ or -] 0.1 kg) queens, FAs in triacylglycerol (TAG), phospholipid (PL), and nonesterified FAs (NEFAs) of plasma and inguinal subcutaneous adipose were determined before and after (d 38, 61, 110, 117, and 251) dietary linseed oil supplementation (30 g/kg). By d 60, LPL-deficient queens gained body weight (+0.4 [+ or -] 0.1 kg), developed normal body fat mass (25 [+ or -] 2%), and were enriched in 18:3(n-3) in their plasma and adipose lipids. Adipose TAG 18:3(n-3) enrichment in LPL-deficient queens was subnormal at all sampling times and, as observed in normal queens, apparently not equilibrated by d 251. Adipose FA profiles in TAG but not PL were substantially different (P < 0.05) between LPL-deficient and normal queens; the 16:0 to 18:2(n-6) ratio was high in LPL-deficient (2.4-4.4) relative to normal queens (1.0-1.4). In LPL-deficient queens, fed-state plasma NEFA (n-6) and (n-3) enrichments were similar to those in adipose TAG, and plasma NEFA concentration was high (0.62 [+ or -] 0.05 mmol/L) and similar to that in normal queens after withholding diet for 16 h. These data indicate that LPL deficiency in cats reduces dietary FA storage efficiency, favors storage of saturated over unsaturated FAs, and stimulates de novo FA synthesis substantive enough to support normal adiposity.

Abstract: BACKGROUND: Lignin is a complex, phenolic polymer found in plant cell walls that is essential for mechanical support, water and mineral transport, and defense in vascular plants. Over ten different enzymes play a role in the synthesis of lignin in plants. Suppression of any one enzyme or combinations of these enzymes may change the concentration and composition of lignin in the genetically transformed plants. Two lines of alfalfa that were downregulated for caffeoyl coenzyme A O‐methyltransferase were used to assess the impact of lignin downregulation on chemical composition and fermentation rate and extent using an in vitro gas production technique. A total of 64 samples consisting of two reduced lignin (RL) and two controls (CL), four field replicates, two cutting intervals (CIs; 28 and 35 days), and two cuts (Cut‐1 and Cut‐3) were used. RESULTS: No differences were detected in yield, crude protein, neutral detergent fiber (aNDF), and acid detergent fiber between the lines when harvested at the 28‐day CI. The acid detergent lignin (ADL) concentration in RL alfalfa lines was significantly ( P < 0.001) lower than in the CL. In alfalfa harvested at the 35‐day CI, the RL alfalfa resulted in lower ( P < 0.001) yield than CL. RL alfalfa lines had 24% and 22% lower ( P < 0.001) ADL in Cut‐1 and Cut‐3 respectively than CL lines. The in vitro dry matter digestibility and aNDF digestibility (both as determined by the near‐infrared reflectance method) were greater ( P < 0.001) in RL than in CL lines harvested at the 35‐day CI. In alfalfa harvested at the 35‐day CI, extent of in vitro gas production and metabolizable energy content were greater in RL than in CL alfalfa. RL lines had 3.8% indigestible aNDF per unit ADL, whereas CL had 3.4% ( P < 0.01). The positive effect of lignin downregulation was more pronounced when intervals between harvests were longer (35‐day CI compared with the 28‐day CI). CONCLUSION: Lignin downregulation in alfalfa offers an opportunity to extend harvesting time (CI) for higher yield without compromising the nutritional quality of the alfalfa forage for dairy and livestock feeding. However, the in vitro results reported here warrant further study using in vivo methods. © 2018 Society of Chemical Industry [ABSTRACT FROM AUTHOR]

The present study investigated the effects of a feed additive and rumen microbial modifier, monensin sodium (monensin), on selected variables in lactating dairy cows. Monensin fed cows (MON, 600 mg d(-1)) were compared with untreated control cows (CON, 0 mg d(-1)) with respect to the effects of monensin on the production of three greenhouse gases (GHG), methane (CH(4)), nitrous oxide (N(2)O), and carbon dioxide (CO(2)), along with animal performance (dry matter intake; DMI), milk production, milk components, plasma urea nitrogen (PUN), milk urea nitrogen (MUN), and the microbial population structure of fresh feces. Measurements of GHG were collected at Days 14 and 60 in an environmental chamber simulating commercial dairy freestall housing conditions. Milk production and DMI measurements were collected twice daily over the 60-d experimental period; milk components, PUN, and MUN were measured on Days 14 and 60. The microbial population structure of feces from 6 MON and 6 CON cows was examined on three different occasions (Days 14, 30, and 60). Monensin did not affect emissions of methane (CH(4)), nitrous oxide (N(2)O), and carbon dioxide (CO(2)). Over a 24-h period, emissions of CH(4), N(2)O, and CO(2) decreased in both MON and CON groups. Animal performance and the microbial population structure of the animal fresh waste were also unaffected for MON vs. CON cows.