27 results on '"DeKlerk, N"'
Search Results
2. Exposure-Response Analysis and Risk Assessment for Silica and Silicosis Mortality in a Pooled Analysis of Six Cohorts
- Author
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Mannetje, A. 't, Steenland, K., Attfield, M., Boffetta, P., Checkoway, H., DeKlerk, N., and Koskela, R-S.
- Published
- 2002
3. Changes in risk factors for preterm birth in Western Australia 1984–2006
- Author
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Hammond, G C, Langridge, A T, Leonard, H, Hagan, R, Jacoby, P, DeKlerk, N, and Stanley, F
- Published
- 2013
- Full Text
- View/download PDF
4. SILICA, SILICOSIS AND LUNG CANCER IN KALGOORLIE GOLD-MINERS: TO 19
- Author
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MUSK, A W, PANG, S C, AMBROSINI, G, REID, A, and DEKLERK, N
- Published
- 2008
5. Exposure-response analysis and risk assessment for silica and silicosis mortality in a pooled analysis of six cohorts
- Author
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't Mannetje, A, Steenland, K, Attfield, M, Boffetta, P, Checkoway, H, DeKlerk, N, and Koskela, R-S
- Published
- 2002
6. Lowdose CT screen-detected malignant and non-malignant findings in a Western Australian Asbestos-exposed cohort: results from the first 5 years of screening
- Author
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Harris, E., Murray, C., Adler, B., Kong, K., Reid, A., Franklin, P., DeKlerk, N., Musk, A., Brims, Fraser, Harris, E., Murray, C., Adler, B., Kong, K., Reid, A., Franklin, P., DeKlerk, N., Musk, A., and Brims, Fraser
- Published
- 2018
7. Transiently increased IgE responses in infants and pre-schoolers receiving only acellular Diphtheria–Pertussis–Tetanus (DTaP) vaccines compared to those initially receiving at least one dose of cellular vaccine (DTwP) – Immunological curiosity or canary in the mine?
- Author
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Holt, P., Snelling, Thomas, White, O., Sly, P., DeKlerk, N., Carapetis, J., Biggelaar, A., Wood, N., McIntyre, P., Gold, M., Holt, P., Snelling, Thomas, White, O., Sly, P., DeKlerk, N., Carapetis, J., Biggelaar, A., Wood, N., McIntyre, P., and Gold, M.
- Abstract
© 2016 Elsevier Ltd Background Several previous studies have highlighted the strong Th2-polarising and IgE-promoting activity of the DTaP vaccine, but there is no evidence that this has pathological consequences and accordingly there is no current interest amongst vaccine developers in reformulating DTaP to attenuate these properties. In light of an apparent resurgence in pertussis in many countries, and emerging evidence from other areas of paediatric immunology of IgE-mediated interference with host defence mechanisms, this issue requires more detailed clarification. Methods We have re-evaluated the impact of DTaP-only versus mixed DTwP/DTaP vaccination on Th2-dependent “bystander” IgE responses in three cohorts of children under different priming conditions, encompassing both vaccine-targeted and unrelated antigens including food allergens. Results We confirm the generalised IgE-trophic activity of the DTaP vaccine in pre-schoolers and demonstrate similar (albeit transient) effects in infants. We additionally demonstrate that use of an alternative mixed infant priming schedule encompassing an initial dose of DTwP significantly attenuates this property. Interpretation Central to our interpretation of these findings are studies demonstrating: (i) mixed DTwP/DTaP priming improves resistance to pertussis disease and attenuates the IgE-stimulatory component of long term vaccine-specific memory; (ii) IgE-mediated mechanisms can interfere with innate antiviral immunity and accordingly exacerbate airway symptoms in infected children. These observations, taken together with the data presented here, suggest a plausible mechanistic link between baseline pertussis-specific IgE titres in DTaP vaccinees and susceptibility to pertussis disease, which merits testing. Retrospective IgE analyses on sera collected from children at the time of presentation with pertussis could resolve this issue.
- Published
- 2016
8. Blood pressure and catecholamines following exercise during selective beta-blockade in hypertension
- Author
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Vandongen, R., Margetts, B., Beilin, L. J., deKlerk, N., and Rogers, P.
- Published
- 1986
- Full Text
- View/download PDF
9. Pre- and postnatal influences on preschool mental health: A large-scale cohort study
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Robinson, M, Oddy, W, Li, J, Kendall, G, Deklerk, N, Silburn, S, Zubrick, S, Newnham, J, Stanley, F, Mattes, E, Robinson, M, Oddy, W, Li, J, Kendall, G, Deklerk, N, Silburn, S, Zubrick, S, Newnham, J, Stanley, F, and Mattes, E
- Abstract
Background: Methodological challenges such as confounding have made the study of the early determinants of mental health morbidity problematic. This study aims to address these challenges in investigating antenatal, perinatal and postnatal risk factors for the development of mental health problems in pre-school children in a cohort of Western Australian children.Methods: The Raine Study is a prospective cohort study of 2,868 live born children involving 2,979 pregnant women recruited at 18 weeks gestation. Children were followed up at age two and five years. The Child Behaviour Checklist (CBCL) was used to measure child mental health with clinical cut-points, including internalising (withdrawn/depressed) and externalising (aggressive/destructive) behaviours (n = 1707).Results: Multinomial logistic regression analysis showed that the significant risk factors for behaviour problems at age two were the maternal experience of multiple stress events in pregnancy (OR = 1.20, 95% CI = 1.06, 1.37), smoking during pregnancy (OR = 1.30, 95% CI = 1.06, 1.59) and maternal ethnicity (OR = 3.34, 95% CI = 1.61, 6.96). At age five the experience of multiple stress events (OR = 1.17, 95% CI = 1.08, 1.27), cigarette smoking (OR = 1.19, 95% CI = 1.03, 1.37), male gender (OR = 1.43, 95% CI = 1.02, 2.00), breastfeeding for a shorter time (OR = .97, 95% CI = .94, .99) and multiple baby blues symptoms (OR = 1.08, 95% CI = 1.02, 1.14) were significant predictors of mental health problems.Conclusions: Early childhood mental health is significantly affected by prenatal events in addition to the child’s later environment. Interventions targeting adverse prenatal, perinatal and postnatal influences can be expected to improve mental health outcomes for children in the early years.
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- 2008
10. Authors' reply: Changes in risk factors for preterm birth in Western Australia 1984-2006
- Author
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Hammond, GC, primary, Langridge, AT, additional, Leonard, H, additional, Hagan, R, additional, Jacoby, P, additional, DeKlerk, N, additional, and Stanley, F, additional
- Published
- 2013
- Full Text
- View/download PDF
11. Physical and mental health of mothers caring for a child with Rett syndrome
- Author
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Laurvick, C., Msall, M., Silburn, Sven, Bower, C., Deklerk, N., Leonard, H., Laurvick, C., Msall, M., Silburn, Sven, Bower, C., Deklerk, N., and Leonard, H.
- Abstract
OBJECTIVES: Our goal was to investigate the physical and mental health of mothers who care for a child with Rett syndrome. METHODS: We assessed maternal physical and mental health by using the SF-12 version 1 physical component summary and mental component summary scores as the outcome measures of interest. Mothers (n = 135) of children with Rett syndrome completed the SF-12 measure as part of the Australian Rett Syndrome Study in 2002. The analysis investigated linear relationships between physical and mental health scores and maternal, family, and child characteristics. RESULTS: Mothers ranged in age from 21 to 60 years and their children from 3 to 27 years. Nearly half of these mothers (47.4%) indicated that they worked full-time or part-time outside the home, and 41% had a combined family (gross) income of <40000 Australian dollars. The resultant model for physical health demonstrated that the following factors were positively associated with better maternal physical health: the mother working full-time or part-time outside the home, having some high school education, having private health insurance, the child not having breathing problems in the last 2 years, the child not having home-based structured therapy, and high scores on the Family Resource Scale (indicating adequacy of time resources for basic and family needs). The resultant model for mental health demonstrated that the following factors were positively associated with better maternal mental health: the mother working full-time or part-time outside the home, the child not having a fracture in the last 2 years, lesser reporting of facial stereotypes and involuntary facial movements, being in a well-adjusted marriage, and having low stress scores. CONCLUSIONS: Our study suggests that the most important predictors of maternal physical and emotional health are child behavior, caregiver demands, and family function.
- Published
- 2006
12. Associations of a novel IL4RA polymorphism, Ala57Thr, in Greenlander Inuit
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Khoo, S., Zhang, G., Backer, V., Porsbjerg, C., Nepperchristensen, S., Creegan, R., Baynam, G., Deklerk, N., Rossi, G., Hagel, I., Di Prisco, M.C., Lynch, N., Britton, J., Hill, I., Musk, A.W., Goldblatt, J., Le Souëf, P.N., the Greenlandic Population Study Group, ., Khoo, S., Zhang, G., Backer, V., Porsbjerg, C., Nepperchristensen, S., Creegan, R., Baynam, G., Deklerk, N., Rossi, G., Hagel, I., Di Prisco, M.C., Lynch, N., Britton, J., Hill, I., Musk, A.W., Goldblatt, J., Le Souëf, P.N., and the Greenlandic Population Study Group, .
- Abstract
Background A novel IL4RA polymorphism, Ala57Thr, was identified in Greenlander Inuit. Objective We sought to determine whether the novel Thr57 allele is population specific and to assess the associations of Ala57Thr and Ile50Val with atopy in 2 Inuit populations. Methods Ala57Thr and Ile50Val were genotyped in 651 Inuit living in Denmark, 1295 Inuit living in Greenland, and 1329 individuals from 7 populations from widely differing global locations. In Inuit the polymorphisms were evaluated for associations with atopy, rhinitis, asthma, and pulmonary function. Results Thr57 was in linkage disequilibrium with Ile50 (D′ = 1, r2 = 0.13) and was common (33%) in the Inuit but rare (<0.6%) in all other populations. In Inuit living in Denmark, the Thr57 allele (in a dose-dependent manner) and the Ile50/Thr57 haplotype were associated with lower risk of atopy (Plinear = .003 and P = .034, respectively), with similar trends observed for atopic rhinitis and atopic asthma. In Inuit living in Greenland, Thr57 was not associated with atopy or atopic diseases, but Ile50 was weakly associated with lower risk of atopy. Conclusion The novel IL4RA Ala57Thr was common in and population specific to Greenlander Inuit, with Thr57 associated with a lower risk of atopy in those living in Denmark. Hence a full investigation of genotype-phenotype relationships in a given population can only be achieved if each gene is screened for novel polymorphisms in that population. Clinical implications Clinical risk attributable to variations in a gene in an ethnic group requires that all variations of the gene are known for that group.
- Published
- 2006
13. The Relationship Between Outdoor Air Quality and Respiratory Symptoms in Young Children
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Rodriguez, C, primary, Hinwood, A, additional, Tonkin, R, additional, Heyworth, J, additional, Kusel, M, additional, Deklerk, N, additional, Sly, P, additional, Franklin, P, additional, Runnion, T, additional, Blockley, A, additional, and Landau, L, additional
- Published
- 2006
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14. Associations of a novel IL4RA polymorphism, Ala57Thr, in Greenlander Inuit
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KHOO, S, primary, ZHANG, G, additional, BACKER, V, additional, PORSBJERG, C, additional, NEPPERCHRISTENSEN, S, additional, CREEGAN, R, additional, BAYNAM, G, additional, DEKLERK, N, additional, ROSSI, G, additional, and HAGEL, I, additional
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- 2006
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15. Pooled exposure-response analyses and risk assessment for lung cancer in 10 cohorts of silica-exposed workers: an IARC multicentre study.
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Steenland, Kyle, Mannetje, Andrea, Boffetta, Paolo, Stayner, Leslie, Attfield, Michael, Chen, Jingqiong, Dosemeci, Mustafa, DeKlerk, Nicholas, Hnizdo, Eva, Koskela, Riitta, Checkoway, Harvey, Steenland, K, Mannetje, A, Boffetta, P, Stayner, L, Attfield, M, Chen, J, Dosemeci, M, DeKlerk, N, and Hnizdo, E
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EMISSION standards ,AIR pollution ,CARCINOGENS ,COMPARATIVE studies ,GOLD ,LONGITUDINAL method ,DUST diseases ,LUNG tumors ,RESEARCH methodology ,MEDICAL cooperation ,MINERAL industries ,OCCUPATIONAL diseases ,REGRESSION analysis ,RESEARCH ,RISK assessment ,SILICA ,EVALUATION research ,DISEASE complications - Abstract
Objectives: Silica is one of the most common occupational exposures worldwide. In 1997 the International Agency for Research on Cancer (IARC) classified inhaled crystalline silica as a human carcinogen (group 1), but acknowledged limitations in the epidemiologic data, including inconsistencies across studies and the lack of extensive exposure–response data. We have conducted a pooled exposure–response analysis of 10 silica-exposed cohorts to investigate lung cancer. Methods: The pooled cohort included 65,980 workers (44,160 miners, 21,820 nominees), and 1072 lung cancer deaths (663 miners, 409 nonminers). Follow-up has been extended for five of these cohorts beyond published data. Quantitative exposure estimates by job and calendar time were adopted, modified, or developed to permit common analyses by respirable silica (mg/m
3 ) across cohorts. Results: The log of cumulative exposure, with a 15-year lag, was a strong predictor of lung cancer ( p = 0.0001), with consistency across studies (test for heterogeneity, p = 0.34). Results for the log of cumulative exposure were consistent between underground mines and other facilities. Categorical analyses by quintile of cumulative exposure resulted in a monotonic trend with odds ratios of 1.0, 1.0, 1.3, 1.5, 1.6. Analyses using a spline curve also showed a monotonic increase in risk with increasing exposure. The estimated excess lifetime risk (through age 75) of lung cancer for a worker exposed from age 20 to 65 at 0.1 mg/m3 respirable crystalline silica (the permissible level in many countries) was 1.1–1.7%, above background risks of 3–6%. Conclusions: Our results support the decision by the IARC to classify inhaled silica in occupational settings as a carcinogen, and suggest that the current exposure limits in many countries may be inadequate. These data represent the first quantitative exposure–response analysis and risk assessment for silica using data from multiple studies. [ABSTRACT FROM AUTHOR]- Published
- 2001
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- View/download PDF
16. A Comparison of Blood Pressure Measurements Obtained with the Dinamap 845XT, the Standard Mercury Sphygmomanometer and the London School of Hygiene Device.
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Jenner, D. A., Beilin, L. J., Vandongen, R., and Deklerk, N. H.
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- 1988
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- View/download PDF
17. Plasma catecholamines following exercise in hypertensives treated with pindolol: comparison with placebo and metoprolol.
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Vandongen, R., Margetts, B., Deklerk, N., Beilin, LJ, and Rogers, P.
- Abstract
This study re-examines the proposal that beta-adrenoceptor blockers with intrinsic sympathomimetic activity decrease plasma noradrenaline levels. Thirteen patients (aged 29-65 years) with uncomplicated essential hypertension were randomly allocated to a three period, double-blind cross-over trial. The treatment periods, each of 3 weeks duration, were composed of placebo, pindolol (5 mg twice daily) and metoprolol (100 mg twice daily), dispensed in identical capsules. At the end of each treatment period, patients were exercised on a bicycle ergometer to a predetermined workload. Blood pressure and heart rate were measured before, immediately on completion of exercise and after 10 min post-exercise rest. Blood samples for plasma noradrenaline and adrenaline determination were also collected at these times. Blood pressures were similar during treatment with pindolol and metoprolol. As expected, heart rate was consistently lower during metoprolol treatment. Basal, pre-exercise plasma noradrenaline and adrenaline were similar at the end of each treatment period. However, the increase following exercise was significantly greater during metoprolol treatment. The post-exercise increase during pindolol treatment was indistinguishable from that in the placebo period. These findings, in a randomised placebo-controlled study, therefore demonstrate that pindolol does not influence basal or exercise-stimulated plasma noradrenaline and adrenaline concentrations. This is best explained by a lack of effect of pindolol on the plasma clearance of catecholamines, which is impaired by beta-adrenoceptor blockers devoid of intrinsic sympathomimetic activity. [ABSTRACT FROM AUTHOR]
- Published
- 1986
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- View/download PDF
18. Radiographic (ILO) reading predicts desaturation during exercise but notvtfcmax in subjects with asbestosis
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Lee, Y. C., Bhajan Singh, Pang, S. C., Deklerk, N. H., David Hillman, and Musk, A. W.
19. DataSHIELD: Taking the analysis to the data, not the data to the analysis
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Kirsti Kvaløy, Joel T. Minion, Chris Dibben, Isabel Fortier, Kim W. Carter, Gillian M. Raab, Ronald P. Stolk, Paul Burton, Mathieu Boniol, Susan E. Wallace, Catherine M. Phillips, Kristian Hveem, Chris Newby, Elinor Jones, Ivan J. Perry, Maria Bota, Richard W. Francis, Seán R. Millar, Oliver Butters, Julia Isaeva, Paolo Boffetta, Nuala A. Sheehan, Andrew Turner, Isabelle Budin-Ljøsne, Lisette Giepmans, Frank Popham, Andy Boyd, John Macleod, Bruce H R Woffenbuttel, Ipek Demir, Bartha Maria Knoppers, Carsten Oliver Schmidt, Eva Reischl, Barnaby Murtagh, Vincent Ferretti, Marja-Liisa Nuotio, Melanie Waldenberger, Philippe Laflamme, Yannick Marcon, Markus Perola, Edwin R. van den Heuvel, Jennifer R. Harris, Madeleine J Murtagh, Tero Hiekkalinna, N. Deklerk, Annette Peters, Amadou Gaye, Rebecca Wilson, Dany Doiron, Institute for Molecular Medicine Finland, Quantitative Genetics, Gaye, A., Marcon, Y., Isaeva, J., Laflamme, P., Turner, A., Jones, E.M., Minion, J., Boyd, A.W., Newby, C.J., Nuotio, M., Wilson, R., Butters, O., Murtagh, B., Demir, I., Doiron, D., Giepmans, L., Wallace, S.E., Budin-ljøsne, I., Oliver schmidt, C., Boffetta, P., Boniol, M., Bota, M., Carter, K.W., Deklerk, N., Dibben, C., Francis, R.W., Hiekkalinna, T., Hveem, K., Kvaløy, K., Millar, S., Perry, I.J., Peters, A., Phillips, C.M., Popham, F., Raab, G., Reischl, E., Sheehan, N., Waldenberger, M., Perola, M., Van den heuvel, E., Macleod, J., Knoppers, B.M., Stolk, R.P., Fortier, I., Harris, J.R., Woffenbuttel, B.H.R., Murtagh, M.J., Ferretti, V., Burton, P.R., Life Course Epidemiology (LCE), Lifestyle Medicine (LM), School of Social and Community Medicine [Bristol], University of Bristol [Bristol], McGill University Health Center [Montreal] (MUHC), Norwegian Institute of Public Health [Oslo] (NIPH), Department of Statistical Science, University College of London, University College of London [London] (UCL), Department of Infection, Immunity and Inflammation, Health Sciences, University of Leiceste, Institute for Molecular Medicine Finland (FIMM), Department of Chronic Disease Prevention, Unit of Public Health Genomics, National Institute for Health and Welfare [Helsinki], Department of Health Sciences [Leicester], University of Leicester, Department of Sociology [Leicester], Department of Epidemiology, University Medical Center Groningen, University of Groningen [Groningen], Greifswald University Hospital, International Prevention Research Institute (IPRI), The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai [New York] (MSSM), The University of Western Australia (UWA), School of Geosciences [Edinburgh], University of Edinburgh, Norwegian University of Science and Technology [Trondheim] (NTNU), Norwegian University of Science and Technology (NTNU), HRB Centre for Diet and Health Research, Department of Epidemiology and Public Health, University College Cork, Research Unit of Molecular Epidemiology, Research Center for Environmental Health, MRC/CSO Social and Public Health Sciences Unit, University of Glasgow, University of Tartu, University Medical Center Groningen, Medical Statistic, Centre of Genomics and Policy [Montréal] (CGP), McGill University = Université McGill [Montréal, Canada], University Medical Center Groningen, LifeLines Cohort Study, Department of Endocrinology, University Medical Center Groningen, Ontario Institute for Cancer Research [Canada] (OICR), and Ontario Institute for Cancer Research
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Biomedical Research ,Datashield ,Elsi ,Bioinformatics ,Confidentiality ,Disclosure ,Distributed Computing ,Intellectual Property ,Pooled Analysis ,Privacy ,Databases, Factual ,Epidemiology ,Pooling ,Datasets as Topic ,Information Storage and Retrieval ,DISEASE ,Firewall (construction) ,Medicine ,pooled analysi ,Biomedical Research Computational Biology *Computer Security *Confidentiality Databases ,Data processing ,PRIVACY ,Intellectual property ,General Medicine ,bioinformatics ,confidentiality ,3142 Public health care science, environmental and occupational health ,3. Good health ,ELSI ,INDIVIDUAL-LEVEL ,pooled analysis ,disclosure ,Data Matters ,education ,MODELS ,EPIDEMIOLOGIC RESEARCH ,Pooled analysis ,RS ,distributed computing ,DataSHIELD ,Humans ,QUALITY ,GENOME-WIDE ASSOCIATION ,Computer Security ,METAANALYSIS ,Data collection ,bioinformatic ,business.industry ,DATASHAPER APPROACH ,Computational Biology ,intellectual property ,Factual *Datasets as Topic Great Britain Humans *Information Storage and Retrieval DataSHIELD Elsi bioinformatics confidentiality disclosure distributed computing intellectual property pooled analysis privacy ,Data science ,United Kingdom ,Distributed computing ,Data set ,Data access ,COHORT PROFILE ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,business - Abstract
Gaye, Amadou Marcon, Yannick Isaeva, Julia LaFlamme, Philippe Turner, Andrew Jones, Elinor M Minion, Joel Boyd, Andrew W Newby, Christopher J Nuotio, Marja-Liisa Wilson, Rebecca Butters, Oliver Murtagh, Barnaby Demir, Ipek Doiron, Dany Giepmans, Lisette Wallace, Susan E Budin-Ljosne, Isabelle Oliver Schmidt, Carsten Boffetta, Paolo Boniol, Mathieu Bota, Maria Carter, Kim W deKlerk, Nick Dibben, Chris Francis, Richard W Hiekkalinna, Tero Hveem, Kristian Kvaloy, Kirsti Millar, Sean Perry, Ivan J Peters, Annette Phillips, Catherine M Popham, Frank Raab, Gillian Reischl, Eva Sheehan, Nuala Waldenberger, Melanie Perola, Markus van den Heuvel, Edwin Macleod, John Knoppers, Bartha M Stolk, Ronald P Fortier, Isabel Harris, Jennifer R Woffenbuttel, Bruce H R Murtagh, Madeleine J Ferretti, Vincent Burton, Paul R eng MC_UP_A540₁021/Medical Research Council/United Kingdom MR/K006525/1/Medical Research Council/United Kingdom Medical Research Council/United Kingdom Wellcome Trust/United Kingdom Research Support, Non-U.S. Gov't England 2014/09/30 06:00 Int J Epidemiol. 2014 Dec;43(6):1929-44. doi: 10.1093/ije/dyu188. Epub 2014 Sep 26.; International audience; BACKGROUND: Research in modern biomedicine and social science requires sample sizes so large that they can often only be achieved through a pooled co-analysis of data from several studies. But the pooling of information from individuals in a central database that may be queried by researchers raises important ethico-legal questions and can be controversial. In the UK this has been highlighted by recent debate and controversy relating to the UK's proposed 'care.data' initiative, and these issues reflect important societal and professional concerns about privacy, confidentiality and intellectual property. DataSHIELD provides a novel technological solution that can circumvent some of the most basic challenges in facilitating the access of researchers and other healthcare professionals to individual-level data. METHODS: Commands are sent from a central analysis computer (AC) to several data computers (DCs) storing the data to be co-analysed. The data sets are analysed simultaneously but in parallel. The separate parallelized analyses are linked by non-disclosive summary statistics and commands transmitted back and forth between the DCs and the AC. This paper describes the technical implementation of DataSHIELD using a modified R statistical environment linked to an Opal database deployed behind the computer firewall of each DC. Analysis is controlled through a standard R environment at the AC. RESULTS: Based on this Opal/R implementation, DataSHIELD is currently used by the Healthy Obese Project and the Environmental Core Project (BioSHaRE-EU) for the federated analysis of 10 data sets across eight European countries, and this illustrates the opportunities and challenges presented by the DataSHIELD approach. CONCLUSIONS: DataSHIELD facilitates important research in settings where: (i) a co-analysis of individual-level data from several studies is scientifically necessary but governance restrictions prohibit the release or sharing of some of the required data, and/or render data access unacceptably slow; (ii) a research group (e.g. in a developing nation) is particularly vulnerable to loss of intellectual property-the researchers want to fully share the information held in their data with national and international collaborators, but do not wish to hand over the physical data themselves; and (iii) a data set is to be included in an individual-level co-analysis but the physical size of the data precludes direct transfer to a new site for analysis.
- Published
- 2014
20. Comment on: "Low-dose computed tomography screening for lung cancer in people with workplace exposure to asbestos".
- Author
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Harris EJA, Musk AW, DeKlerk N, and Brims FJH
- Published
- 2019
- Full Text
- View/download PDF
21. Transiently increased IgE responses in infants and pre-schoolers receiving only acellular Diphtheria-Pertussis-Tetanus (DTaP) vaccines compared to those initially receiving at least one dose of cellular vaccine (DTwP) - Immunological curiosity or canary in the mine?
- Author
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Holt PG, Snelling T, White OJ, Sly PD, DeKlerk N, Carapetis J, Biggelaar AVD, Wood N, McIntyre P, and Gold M
- Subjects
- Child, Preschool, Diphtheria-Tetanus-Pertussis Vaccine administration & dosage, Diphtheria-Tetanus-acellular Pertussis Vaccines administration & dosage, Humans, Immunization Schedule, Immunization, Secondary, Infant, Retrospective Studies, Antibodies, Bacterial blood, Diphtheria-Tetanus-Pertussis Vaccine therapeutic use, Diphtheria-Tetanus-acellular Pertussis Vaccines therapeutic use, Immunoglobulin E blood
- Abstract
Background: Several previous studies have highlighted the strong Th2-polarising and IgE-promoting activity of the DTaP vaccine, but there is no evidence that this has pathological consequences and accordingly there is no current interest amongst vaccine developers in reformulating DTaP to attenuate these properties. In light of an apparent resurgence in pertussis in many countries, and emerging evidence from other areas of paediatric immunology of IgE-mediated interference with host defence mechanisms, this issue requires more detailed clarification., Methods: We have re-evaluated the impact of DTaP-only versus mixed DTwP/DTaP vaccination on Th2-dependent "bystander" IgE responses in three cohorts of children under different priming conditions, encompassing both vaccine-targeted and unrelated antigens including food allergens., Results: We confirm the generalised IgE-trophic activity of the DTaP vaccine in pre-schoolers and demonstrate similar (albeit transient) effects in infants. We additionally demonstrate that use of an alternative mixed infant priming schedule encompassing an initial dose of DTwP significantly attenuates this property., Interpretation: Central to our interpretation of these findings are studies demonstrating: (i) mixed DTwP/DTaP priming improves resistance to pertussis disease and attenuates the IgE-stimulatory component of long term vaccine-specific memory; (ii) IgE-mediated mechanisms can interfere with innate antiviral immunity and accordingly exacerbate airway symptoms in infected children. These observations, taken together with the data presented here, suggest a plausible mechanistic link between baseline pertussis-specific IgE titres in DTaP vaccinees and susceptibility to pertussis disease, which merits testing. Retrospective IgE analyses on sera collected from children at the time of presentation with pertussis could resolve this issue., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
22. DataSHIELD: taking the analysis to the data, not the data to the analysis.
- Author
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Gaye A, Marcon Y, Isaeva J, LaFlamme P, Turner A, Jones EM, Minion J, Boyd AW, Newby CJ, Nuotio ML, Wilson R, Butters O, Murtagh B, Demir I, Doiron D, Giepmans L, Wallace SE, Budin-Ljøsne I, Oliver Schmidt C, Boffetta P, Boniol M, Bota M, Carter KW, deKlerk N, Dibben C, Francis RW, Hiekkalinna T, Hveem K, Kvaløy K, Millar S, Perry IJ, Peters A, Phillips CM, Popham F, Raab G, Reischl E, Sheehan N, Waldenberger M, Perola M, van den Heuvel E, Macleod J, Knoppers BM, Stolk RP, Fortier I, Harris JR, Woffenbuttel BH, Murtagh MJ, Ferretti V, and Burton PR
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- Computational Biology, Databases, Factual, Humans, United Kingdom, Biomedical Research, Computer Security, Confidentiality, Datasets as Topic, Information Storage and Retrieval
- Abstract
Background: Research in modern biomedicine and social science requires sample sizes so large that they can often only be achieved through a pooled co-analysis of data from several studies. But the pooling of information from individuals in a central database that may be queried by researchers raises important ethico-legal questions and can be controversial. In the UK this has been highlighted by recent debate and controversy relating to the UK's proposed 'care.data' initiative, and these issues reflect important societal and professional concerns about privacy, confidentiality and intellectual property. DataSHIELD provides a novel technological solution that can circumvent some of the most basic challenges in facilitating the access of researchers and other healthcare professionals to individual-level data., Methods: Commands are sent from a central analysis computer (AC) to several data computers (DCs) storing the data to be co-analysed. The data sets are analysed simultaneously but in parallel. The separate parallelized analyses are linked by non-disclosive summary statistics and commands transmitted back and forth between the DCs and the AC. This paper describes the technical implementation of DataSHIELD using a modified R statistical environment linked to an Opal database deployed behind the computer firewall of each DC. Analysis is controlled through a standard R environment at the AC., Results: Based on this Opal/R implementation, DataSHIELD is currently used by the Healthy Obese Project and the Environmental Core Project (BioSHaRE-EU) for the federated analysis of 10 data sets across eight European countries, and this illustrates the opportunities and challenges presented by the DataSHIELD approach., Conclusions: DataSHIELD facilitates important research in settings where: (i) a co-analysis of individual-level data from several studies is scientifically necessary but governance restrictions prohibit the release or sharing of some of the required data, and/or render data access unacceptably slow; (ii) a research group (e.g. in a developing nation) is particularly vulnerable to loss of intellectual property-the researchers want to fully share the information held in their data with national and international collaborators, but do not wish to hand over the physical data themselves; and (iii) a data set is to be included in an individual-level co-analysis but the physical size of the data precludes direct transfer to a new site for analysis., (© The Author 2014; all rights reserved. Published by Oxford University Press on behalf of the International Epidemiological Association.)
- Published
- 2014
- Full Text
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23. Authors' reply: changes in risk factors for preterm birth in Western Australia 1984-2006.
- Author
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Hammond GC, Langridge AT, Leonard H, Hagan R, Jacoby P, Deklerk N, and Stanley F
- Subjects
- Female, Humans, Pregnancy, Asthma epidemiology, Herpes Genitalis epidemiology, Hypertension epidemiology, Obstetric Labor, Premature epidemiology, Pre-Eclampsia epidemiology, Pregnancy, High-Risk, Premature Birth epidemiology
- Published
- 2013
- Full Text
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24. Changes in risk factors for preterm birth in Western Australia 1984-2006.
- Author
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Hammond G, Langridge A, Leonard H, Hagan R, Jacoby P, DeKlerk N, Pennell C, and Stanley F
- Subjects
- Adult, Asthma complications, Cesarean Section, Repeat adverse effects, Female, Fetal Membranes, Premature Rupture epidemiology, Herpes Genitalis complications, Humans, Hypertension complications, Infant, Newborn, Maternal Age, Parity, Predictive Value of Tests, Pregnancy, Premature Birth etiology, Premature Birth prevention & control, Regression Analysis, Risk Factors, Socioeconomic Factors, Western Australia epidemiology, Asthma epidemiology, Herpes Genitalis epidemiology, Hypertension epidemiology, Obstetric Labor, Premature epidemiology, Pre-Eclampsia epidemiology, Pregnancy, High-Risk, Premature Birth epidemiology
- Abstract
Objective: To characterise changing risk factors of preterm birth in Western Australia between 1984 and 2006., Design: Population-based study., Setting: Western Australia., Population: All non-Aboriginal women giving birth to live singleton infants between 1984 and 2006., Methods: Multinomial, multivariable regression models were used to assess antecedent profiles by preterm status and labour onset types (spontaneous, medically indicated, prelabour rupture of membranes [PROM]). Population attributable fraction (PAF) estimates characterized the contribution of individual antecedents as well as the overall contribution of two antecedent groups: pre-existing medical conditions (including previous obstetric history) and pregnancy complications., Main Outcome Measure: Antecedent relationships with preterm birth, stratified by labour onset type., Results: Marked increases in maternal age and primiparous births were observed. A four-fold increase in the rates of pre-existing medical complications over time was observed. Rates of pregnancy complications remained stable. Multinomial regression showed differences in antecedent profiles across labour onset types. PAF estimates indicated that 50% of medically indicated preterm deliveries could be eliminated after removing six antecedents from the population; estimates for PROM and spontaneous preterm reduction were between 10 and 20%. Variables pertaining to previous and current obstetric complications (previous preterm birth, previous caesarean section, pre-eclampsia and antepartum haemorrhage) were the most influential predictors of preterm birth and adverse labour onset (PROM and medically indicated)., Conclusions: Preterm antecedent profiles have changed markedly over the 23 years studied. Some changes may be attributable to true change, others to advances in surveillance and detection. Still others may signify change in clinical practice., (© 2013 The Authors BJOG An International Journal of Obstetrics and Gynaecology © 2013 RCOG.)
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- 2013
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25. Aetiology of stillbirth: unexplored is not unexplained.
- Author
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Measey MA, Charles A, d'Espaignet ET, Harrison C, Deklerk N, and Douglass C
- Subjects
- Adult, Female, Humans, Western Australia epidemiology, Diagnosis, Stillbirth epidemiology
- Abstract
Objective: To describe the rate of and demographic factors associated with fetal postmortem investigation and to classify the cause of all fetal deaths that underwent postmortem investigation. To compare the proportion of deaths remaining unexplained after postmortem investigation with estimates derived from death certificates., Method: All fetal deaths in Western Australia (WA) from 1990 to 1999 were identified. These data were used to calculate postmortem rates and describe the characteristics of women consenting to postmortems. A multidisciplinary team classified the cause of all deaths that underwent postmortem investigation using the Perinatal Society of Australia and New Zealand Perinatal Death Classification System. The proportion of deaths that were unexplained was compared with estimates based on death certificates., Results: Of the 1,619 fetal deaths recorded for 1990 to 1999, 49% (n=789) underwent complete postmortem investigation. Based on investigations, 22% of the 789 fetal deaths were unexplained and a further 18% were identified as having fetal growth restriction. Based on death certificates, 42% were unexplained and 65% were later explained by postmortem investigation., Conclusion and Implications: Postmortem investigation rates are low. They reveal a cause of death for the majority of cases that are unexplained clinically. Epidemiological investigations of unexplained fetal death based on cases not subject to complete postmortem investigation may lead to inaccurate conclusions. A standardised definition for unexplained fetal deaths that distinguishes between cases with detailed investigation and those with limited or no investigation is needed.
- Published
- 2007
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26. Parental smoking impairs vaccine responses in children with atopic genotypes.
- Author
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Baynam G, Khoo SK, Rowe J, Zhang G, Laing I, Hayden C, Kusel M, DeKlerk N, Sly P, Goldblatt J, Holt P, and LeSouef P
- Subjects
- Adult, Child, Child, Preschool, Female, Genetic Variation, Genotype, Humans, Immunity, Innate, Interferon-gamma biosynthesis, Interleukin-10 biosynthesis, Male, Parents, Phenotype, Polymorphism, Single Nucleotide, T-Lymphocytes immunology, Hypersensitivity genetics, Interleukin-13 genetics, Interleukin-4 genetics, Receptors, Interleukin-4 genetics, Tobacco Smoke Pollution adverse effects, Vaccines immunology
- Abstract
Background: Gene-environment interactions play central roles in controlling postnatal maturation of immune function, but their effects on infant vaccine responses are unknown. Genetic variants associated with atopy and the environmental factor of exposure to parental smoking (PS) of tobacco independently alter immune responses., Objective: We sought to investigate the hypothesis that genetic variants associated with atopy and their interaction with PS influence infant vaccine responsiveness., Methods: In 200 infants with parental atopic history, relationships were sought between polymorphisms in the IL-4, IL-4 receptor alpha (IL-4Ralpha), and IL-13 genes; PS; and immune responses to diphtheria/tetanus vaccination., Results: Analyses stratified by PS unmasked negative associations between atopic alleles of these genes and vaccine outcomes. The most consistent involved the IL-4Ralpha 551 QR/QQ genotypes, which were associated with reduced IgG levels (P = .02) and T-cell responses (IFN-gamma, P = .002; IL-10, P = .01; 1L-13, P = .01; IL-5, P = .06) to tetanus toxoid and parallel reductions in polyclonal T-cell responses and innate immune responses in PS-exposed infants., Conclusion: PS potentiates suppressive effects of variants in immune response genes in children. These effects are not observed in the absence of this exposure. Ultimately, this finding might have implications for infant vaccination in countries with high smoking rates. It might also have broader implications in relation to environmental toxicology because it demonstrates specific mechanisms through which the developing immune system might be differentially sensitive to low-level toxicant exposures., Clinical Implications: PS interacts with genes associated with atopy to impair vaccine responses. These interactions might have vaccine design and public health implications.
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- 2007
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27. Development of quantitative exposure data for a pooled exposure-response analysis of 10 silica cohorts.
- Author
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Mannetje A', Steenland K, Checkoway H, Koskela RS, Koponen M, Attfield M, Chen J, Hnizdo E, DeKlerk N, and Dosemeci M
- Subjects
- Cohort Studies, Dust, Humans, Lung Neoplasms epidemiology, Lung Neoplasms etiology, Occupational Diseases epidemiology, Occupational Diseases etiology, Occupational Exposure adverse effects, Silicon Dioxide adverse effects, Time Factors, Extraction and Processing Industry, Occupational Exposure analysis, Silicon Dioxide analysis
- Abstract
Background: Comprehensive quantitative silica exposure estimates over time, measured in the same units across a number of cohorts, would make possible a pooled exposure-response analysis for lung cancer. Such an analysis would help clarify the continuing controversy regarding whether silica causes lung cancer., Methods: Existing quantitative exposure data for 10 silica-exposed cohorts were retrieved from the original investigators. Occupation- and time-specific exposure estimates were either adopted/adapted or developed for each cohort, and converted to milligram per cubic meter (mg/m(3)) respirable crystalline silica., Results: Quantitative exposure assignments were typically based on a large number (thousands) of raw measurements, or otherwise consisted of exposure estimates by experts (for two cohorts). Median exposure level of the cohorts ranged between 0.04 and 0.59 mg/m(3) respirable crystalline silica. Exposure estimates were partially validated via their successful prediction of silicosis in these cohorts., Conclusions: Existing data were successfully adopted or modified to create comparable quantitative exposure estimates over time for 10 silica-exposed cohorts, permitting a pooled exposure-response analysis. The difficulties encountered in deriving common exposure estimates across cohorts are discussed., (Copyright 2002 Wiley-Liss, Inc.)
- Published
- 2002
- Full Text
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