40 results on '"De Borggraeve W"'
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2. Facile Method to Obtain Low DS β-ketoesters and Esters of Microfibrillated Cellulose
- Author
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Piras, C. C., Jamieson, S. A., Fratini, E., Fernandez-Prieto, S., Smets, J., and De Borggraeve, W. M.
- Subjects
Hydrogels ,Microfibrillated cellulose ,Nanocellulose ,β-ketoesters - Published
- 2020
3. Divergent pathways in the intramolecular diels-alder reaction of 2(1 H)-pyrazinones substituted at the 3-position with a phenylalkyne containing side chain
- Author
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Tahri, A., De Borggraeve, W., Buysens, K., Van Meervelt, L., Compernolle, F., and Hoornaert, G.J.
- Published
- 1999
- Full Text
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4. Triple Hyp -> Pro Replacement in Integramide A, a Peptaib Inhibitor of HIV-1 Integrase: Effect on Conformation and Bioactivity
- Author
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De Zotti M., De Borggraeve W., Kaptein B., Broxterman Q.B., Singh S.B., Felock P.J., Hazuda D.J., Formaggio F., and Toniolo C.
- Abstract
AIDS is produced by HIV-induced infections. HIV integrase is an important enzyme as it is critical for the integration of the HIV genome into that of the host cell. This complex process is exclusively carried out by a viral enzyme not found in the host cell. Therefore, this protein represents a safe target for the development of single or combined anti-HIV therapy. Integramide A is a 16-mer long, effective peptaib inhibitor of HIV-1 integrase. We have previously described a versatile synthetic strategy in solution to afford this natural compound and its diastereomer at positions 14 and 15. We also found that both peptides display a significant inhibitory activity. Here, we present our data on the synthesis in solution, in-depth conformational analysis, and biological activity against HIV-integrase of the analogs of the two above mentioned peptides in which all of the three (25,4R)-Hyp residues at positions 2, 9, and 13 are replaced by L-Pro. This study definitely confirms that the mixed alpha-/3(10)-helical conformation of natural integramide A plays a key role in its mechanism of inhibition. Moreover, our data provide evidence that the amphipathic character of this helical structure is not required for the activity of integramide A against HIV-1 integrase. These observations will hopefully help us to further clarify the precise mechanism of inhibition of this interesting peptaib and to identify shorter peptide sequences active against HIV-1 integrase.
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- 2011
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5. Role of triple Hyp Pro substitution on conformation and bioactivity of integramide A
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De Zotti M., De Borggraeve W., Kaptein B, Broxterman Q.B., Singh S.B., Felock P., Hazuda D.J., Formaggio F., and Toniolo C.
- Published
- 2010
6. You have full text access to this contentConformational Analysis of TOAC-Labelled Alamethicin F50/5 Analogues
- Author
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Peggion, Cristina, Micha, Jost, De borggraeve, W. i. m. . M., Marco, Crisma, Formaggio, Fernando, and Toniolo, Claudio
- Published
- 2009
7. BODIPY Based Hydroxyaryl Derivatives as Fluorescent pH Probes
- Author
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Baruah, M., Qin, W., Basarić, Nikola, De Borggraeve, W. M., and Boens, N.
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Boron-dipyrromethene dyes ,Spectroscopic properties ,Complexes ,Fluoroionophore ,Fluorophores ,Luminescence ,Design - Abstract
Seven new 4, 4-difluoro-4-bora-3a, 4a-diaza-s-indacene (BODIPY) dyes with phenolic or naphtholic subunits on position 8 and with substituents having different electron driving forces on positions 3 and 5 were synthesized. Their absorption and steady-state fluorescence properties were investigated as a function of solvent. The novel compounds, with the exception of 4, 4-difluoro-8-(4-hydroxyphenyl)-3, 5-bis-(4-methoxyphenyl)-4-bora-3a, 4a-diaza-s-indacene, are characterized by absorption maxima in the range 493-515 nm and small (400-600 cm(-1)) Stokes shifts. The exceptional dye has absorption maxima in the 570-580 nm region and fluorescence emission maxima around 610-620 nm, depending on the solvent. In aqueous solution, the dyes show a large fluorescent enhancement upon increasing the acidity of the solution. They can be used in aqueous solution as fluorescent pH probes excitable with visible light, with pK(a) values ranging from 7.5 to 9.3, depending on the substitution pattern on positions 3, 5, and 8.
- Published
- 2005
8. Tanshinone IIA exhibits anticonvulsant activity in zebrafish and mouse seizure models
- Author
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Luxembourg Centre for Systems Biomedicine (LCSB): Chemical Biology (Crawford Group) [research center], Buenafe, O. E., Orellana-Paucar, A., Maes, J., Huang, H., Ying, X., De Borggraeve, W., Crawford, Alexander Dettmar, Luyten, W., Esguerra, C. V., De Witte, P., Luxembourg Centre for Systems Biomedicine (LCSB): Chemical Biology (Crawford Group) [research center], Buenafe, O. E., Orellana-Paucar, A., Maes, J., Huang, H., Ying, X., De Borggraeve, W., Crawford, Alexander Dettmar, Luyten, W., Esguerra, C. V., and De Witte, P.
- Abstract
Danshen or Chinese red sage (Salvia miltiorrhiza, Bunge) is used by traditional Chinese medicine (TCM) practitioners to treat neurological, cardiovascular, and cerebrovascular disorders and is included in some TCM formulations to control epileptic seizures. In this study, acetonic crude extracts of danshen inhibited pentylenetetrazol (PTZ)-induced seizure activity in zebrafish larvae. Subsequent zebrafish bioassay-guided fractionation of the extract resulted in the isolation of four major tanshinones, which suppressed PTZ-induced activity to varying degrees. One of the active tanshinones, tanshinone IIA, also reduced c-fos expression in the brains of PTZ-exposed zebrafish larvae. In rodent seizure models, tanshinone IIA showed anticonvulsive activity in the mouse 6-Hz psychomotor seizure test in a biphasic manner and modified seizure thresholds in a complex manner for the mouse i.v. PTZ seizure assay. Interestingly, tanshinone IIA is used as a prescription drug in China to address cerebral ischemia in patients. Here, we provide the first in vivo evidence demonstrating that tanshinone IIA has anticonvulsant properties as well. © 2013 American Chemical Society.
- Published
- 2013
9. Polymorphic behaviour of 5-chloro-3-phenyl-2(1H)-pyrazinone
- Author
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Dobrzańska, L., primary, Alen, J., additional, and De Borggraeve, W. M., additional
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- 2012
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10. ChemInform Abstract: Synthesis of 5,5′-Dialkyl-6,6′-dichloro-2,2′-bipyridines.
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Chandia, N. P., primary, Canales, J. C., additional, Azocar, I., additional, Vanlaer, S., additional, Pawar, V. G., additional, De Borggraeve, W. M., additional, Costamagna, J., additional, and Dehaen, W., additional
- Published
- 2009
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11. Synthesis of 5,5′-Dialkyl-6,6′-dichloro-2, 2′-bipyridines
- Author
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Chandia, N. P., primary, Canales, J. C., additional, Azocar, I., additional, Vanlaer, S., additional, Pawar, V. G., additional, De Borggraeve, W. M., additional, Costamagna, J., additional, and Dehaen, W., additional
- Published
- 2009
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12. ChemInform Abstract: Divergent Pathways in the Intramolecular Diels—Alder Reaction of 2(1H)‐Pyrazinones Substituted at the 3‐Position with a Phenylalkyne‐Containing Side Chain.
- Author
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Tahri, A., primary, De Borggraeve, W., additional, Buysens, K., additional, Van Meervelt, L., additional, Compernolle, F., additional, and Hoornaert, G. J., additional
- Published
- 2000
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13. Divergent pathways in the intramolecular diels-alder reaction of 2(1H)-pyrazinones substituted at the 3-position with a phenylalkyne containing side chain
- Author
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Tahri, A., primary, De Borggraeve, W., additional, Buysens, K., additional, Van Meervelt, L., additional, Compernolle, F., additional, and Hoornaert, G.J., additional
- Published
- 1999
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14. Synthesis of a conformationally restricted dipeptide analogue and its evaluation as a β-turn mimic
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De Borggraeve, W
- Published
- 2001
15. Design, Synthesis, and Applications of Functional Hyperbranched Poly(arylene oxindole)s : Ontwerp, Synthese, en Toepassingen van Functionele Hypervertakte Poly Aryleenoxindolen
- Author
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Verheyen, T, Smet, M, and De Borggraeve, W
- Abstract
Nature has inspired scientists to push the boundaries of science. Branched macromolecular structures resemble branching found in nature from the nano to macro-scale (e.g. from veins to trees). The focal point of this thesis is a hyperbranched poly(arylene oxindole) (HBPAO) three-dimensional structure. HBPAOs have a globular, dendritic architecture with abundant functional groups, intramolecular cavities, tunable solubility and are facilely synthesized in a one-step polymerization. By exploiting unique extraordinary properties of the HBPAO, we report diverse smart material applications in two distinct fields. Catalysis enables us to perform reactions more efficiently and plays an important role both in industry and in academia. HBPAOs potentially provide a mimic of enzyme pockets, nature's best catalysts, improving catalytic efficiency compared to their non-supported corresponding catalysts. Cooperative effects within the macromolecular network, both by bringing reagents in close proximity or by bimetallic hydride transfer, thus improving catalytic efficiency are reported in this thesis. Hyperbranched polymers (HBPs) are expected to play an important role in biomedical science in the future. The versatility of HBPAOs is demonstrated by reporting two bioapplications, tissue engineering and formation of nanocarriers. The unique advantages, such as cytocompatibility and multivalent character, of HBPAOs make them outstanding candidates for bioapplications. Hydrophobic HBP-based bioapplications are scarcely reported, yet the provided examples involving hydrophobic HBPAOs prove their potential. We also report a synthetic methodology protocol useful to material science, chemical biology or medicinal chemistry. By merging dehydrogenative activation and cross-coupling, we report a prior non-existent one-step alternative to an often-used multi-step synthesis. The methodology also provides a valuable alternative synthesis to an important building block necessary to prepare HBPAOs. status: published
- Published
- 2019
16. Generation and Valorization of Gases in Organic Synthesis : Generatie en Valorisatie van gassen in Organische Synthese
- Author
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Veryser, C and De Borggraeve, W
- Abstract
Although industrial processes readily use reactive and dangerous gases as platform chemicals, a different picture is seen in lab-scale synthesis. The difficult-to-handle nature of gaseous reagents in combination with stringent safety requirements have posed a significant barrier for research scientists to conduct chemical reactions with gases on a regular basis. In 2011, the Skrydstrup group launched the two-chamber reactor as a safe and user-friendly tool to employ gases in organic synthesis. In this device, a gas is released from a precursor molecule in one chamber, which subsequently diffuses to the adjacent chamber, where it is consumed in a chemical reaction. Consequently, the risk of direct contact between the operator and the gaseous reagent is completely eliminated. In this thesis, we developed one of the most cost-efficient carbon monoxide (CO) generating systems to date, with formic acid as the CO source. In a follow-up project, this system was implemented in a two-chamber reactor for the synthesis of a novel heterocyclic scaffold via an unprecedented intramolecular carbonylative C-H activation of 1-(2-bromoaryl)-1,2,3-triazoles. Moving away from carbon monoxide, precursor molecules for other useful gases were sought after. Due to the renewed interest in sulfuryl fluoride gas (SO2F2), we developed a straightforward protocol for its on-demand production in a two-chamber reactor to transform phenols into aryl fluorosulfates. This class of substrates is particularly interesting, either by merit of its leaving group ability or as a SuFEx click chemistry partner. Lastly, in collaboration with the Skrydstrup group, the field of CO and SO2F2 chemistry were merged to synthesize α,α-bis(trifluoromethyl) carbinols from aryl bromides and fluorosulfates. status: published
- Published
- 2019
17. High-Oxidation-State Sulfur Species as Valuable Functional Handles for Small-Molecule Diversification : Hoog-oxidatietoestand zwavelverbindingen als waardevolle functionele handvaten voor diversificatie van kleine moleculen
- Author
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Demaerel, J, Van Gerven, T, and De Borggraeve, W
- Abstract
Sulfur is a ubiquitous element in physiologically active small molecules. With 259 unique FDA-approved structures, it represents more marketed therapeutics than any other third row element. Almost half of this figure comprises the sulfur atom in an oxygenated state, and this fraction spans over six different product classes. The synthesis and usage of high-oxidation-state sulfur species form the centerpiece of this thesis, on the one hand because of their prevalence in drug discovery, and on the other hand due to their unique properties as chemical reagents. The first project in this work discusses the radical fluoroalkylation of heteroarenes, starting from the corresponding sulfinate salts and, in particular, the influence of ultrasound irradiation thereon. The second section expands on the chemistry of aryl fluorosulfates, sulfur(VI)-centered click partners prepared from gaseous sulfuryl fluoride by making use of two-chamber technology, thus for the first circumventing the necessity of gas bottles. The final part deals with an enantioselective method to prepare complex sulfonamides, which crucially makes use of a proton-coupled electron transfer step to generate a sulfonamidyl radical. status: published
- Published
- 2019
18. Synthesis and application of reactive BODIPY dyes. : Synthese en toepassing van reactieve BODIPY fluoroforen
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Leen, V, De Borggraeve, Wim, Dehaen, W, and De Borggraeve, W
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dye ,synthesis ,BODIPY ,fluorescence - Abstract
BODIPY, a boron containing heterocycle, has emerged as one of the most important fluorescent dyes, with applications in biology, novel materials, sensors and photodynamic therapy (PDT). This project concerns the synthesis of new, specifically substituted reactive BODIPY dyes with a widerange of properties, as well as novel applications hereof. The properties will be studied in collaboration with the division of Molecular and Nanomaterials. status: published
- Published
- 2010
19. Enhanced decoupling of conductivity relaxation from structural relaxation in non-stoichiometric protic ionic liquids involving triflic acid and 2-aminoethyl hydrogen sulfate.
- Author
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You J, Mangialetto J, Li BY, Jia X, Wei R, Niu L, De Borggraeve W, and Wübbenhorst M
- Abstract
The glass transition dynamics and conductivity relaxation are studied for a series of non-stoichiometric protic ionic liquids (PILs) based on 2-aminoethyl hydrogen sulfate and triflic acid with varying molar ratios (denoted as AT-55, AT-46, AT-37, AT-28, and AT-19) by broadband dielectric spectroscopy in a wide frequency (10-1-107 Hz) and temperature range (173-353 K). The results indicate that the addition of acid lowers the glass transition temperature, as confirmed by the activation energy fine structure analysis and a crossover in the conductivity relaxation time. Notably, samples with higher acid content deliver markedly increased conductivity. In addition, detailed analysis of the permittivity and modulus spectra reveals enhanced decoupling between the structural (α-process) and conductivity relaxation in samples with a higher acid content. Remarkably, nano-phase separation in AT-28 and AT-19 samples is observed, resulting in a second glass transition temperature indicating a more mobile phase. Based on the above-mentioned findings, we infer that increased acid content disrupts strong ionic interactions within the IL fraction, resulting in a decrease in the glass transition temperature and leading to nano-phase separation into distinct acid-rich and IL-rich phases with varying Tg values. This phase separation alters the long-range ionic pathways, shifting from being solely governed by IL cluster dynamics to a scenario where charge transport becomes largely decoupled from the dynamics of IL-rich clusters. Hence, modulating the stoichiometry of PILs appears a promising approach to enhance the conductivity together with widening the usable temperature range for applications., (© 2024 Author(s). Published under an exclusive license by AIP Publishing.)
- Published
- 2024
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20. Charge transport in highly acidic glass-forming protic ionic liquids tailored by zwitterionic precursors.
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You J, Li BY, De Borggraeve W, and Wübbenhorst M
- Abstract
Highly acidic protic ionic liquids (PILs) are promising materials for potential electrochemical applications due to their high proton conductivity and excellent thermal stability. Still, little is known about the correlation between charge transport and structural dynamics as well as the proton transport mechanism despite the large body of literature on this topic. Here, we have examined the charge transport and structural dynamics by employing broadband dielectric spectroscopy in two highly acidic PILs in their supercooled liquid and glassy states, which included the same anion [TfO]- and different cations, [Tau]+ vs [Ahs]+. Unlike many other ionic liquids, the conductivity relaxation time τe of two studied PILs is substantially faster than the structural relaxation time τα. The decoupling behavior between charge transport and structural dynamics of two materials, which is manifested by a decoupling index Rτ, varies between 0.3 and 2.3 over the temperature range above Tg. Moreover, "Walden" plots of the molar conductivity vs the viscosity qualify both compounds as "Super ILs." All findings support the physical picture of large, polar, and orientationally correlated ion clusters, where the slow α-relaxation can be identified as structural relaxation associated with cooperative reorientations of the cluster macrodipole. In contrast, the shortest timescale for diffusive charge transport, τe, is 1-2 decades shorter than τα, implying that proton hopping is triggered by "single particle" (ions or ion pair) rotations and jumps on a sub-length scale of the cluster size, a dynamics being present even in the glassy state as indicated by a strong β-relaxation. These results demonstrate the practicality of employing highly acidic PILs in electrochemical fields., (© 2023 Author(s). Published under an exclusive license by AIP Publishing.)
- Published
- 2023
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21. Polyketide Synthase-Mediated O-Methyloxime Formation in the Biosynthesis of the Oximidine Anticancer Agents.
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Vriens E, De Ruysscher D, Weir ANM, Dekimpe S, Steurs G, Shemy A, Persoons L, Santos AR, Williams C, Daelemans D, Crump MP, Voet A, De Borggraeve W, Lescrinier E, and Masschelein J
- Subjects
- Polyketide Synthases genetics, Polyketide Synthases metabolism, Bacteria, Secondary Metabolism, Antineoplastic Agents pharmacology, Antineoplastic Agents metabolism, Polyketides metabolism
- Abstract
Bacterial trans-acyltransferase polyketide synthases (trans-AT PKSs) are modular megaenzymes that employ unusual catalytic domains to assemble diverse bioactive natural products. One such PKS is responsible for the biosynthesis of the oximidine anticancer agents, oxime-substituted benzolactone enamides that inhibit vacuolar H
+ -ATPases. Here, we describe the identification of the oximidine gene cluster in Pseudomonas baetica and the characterization of four novel oximidine variants, including a structurally simpler intermediate that retains potent anticancer activity. Using a combination of in vivo, in vitro and computational approaches, we experimentally elucidate the oximidine biosynthetic pathway and reveal an unprecedented mechanism for O-methyloxime formation. We show that this process involves a specialized monooxygenase and methyltransferase domain and provide insight into their activity, mechanism and specificity. Our findings expand the catalytic capabilities of trans-AT PKSs and identify potential strategies for the production of novel oximidine analogues., (© 2023 Wiley-VCH Verlag GmbH.)- Published
- 2023
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22. The presence of benzophenone in sunscreens and cosmetics containing the organic UV filter octocrylene: A laboratory study.
- Author
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Foubert K, Dendooven E, Theunis M, Naessens T, Ivanova B, Pieters L, Gilissen L, Huygens S, De Borggraeve W, Lambert J, Goossens A, and Aerts O
- Subjects
- Humans, Ketoprofen adverse effects, Molecular Structure, Ultraviolet Rays, Acrylates toxicity, Benzophenones toxicity, Cosmetics chemistry, Dermatitis, Photoallergic etiology, Product Surveillance, Postmarketing, Sunscreening Agents chemistry
- Abstract
Background: The reason why patients photosensitized to the drug ketoprofen (KP) may develop severe photoallergic skin reactions to octocrylene (OCT), an organic ultraviolet filter in sunscreens and cosmetics, remains largely unknown. OCT can be synthesized by using unsubstituted benzophenone (BP), a possible human carcinogen., Objectives: To verify if, and to what extent, BP residues are present in OCT-containing consumer products., Methods: The raw material of OCT and 39 skincare products, of which 28 contain OCT, were chemically analysed for the presence of BP by means of liquid chromatography., Results: In the OCT raw material and in all 28 OCT-containing products the presence of BP could be demonstrated, mostly in concentrations above 10 ppm (0.001%), whereas a majority of OCT-free products (8/11, 73%) did not contain BP. Moreover, BP concentrations significantly increased, in a time- and temperature-dependent manner, likely due to the additional degradation of OCT., Conclusions: Photoallergic contact dermatitis from OCT in patients photosensitized to KP might rely on residual BP impurities. Toxicological and ecological studies that evaluate the safety of OCT might also need to consider the concomitant presence of BP., (© 2021 John Wiley & Sons A/S . Published by John Wiley & Sons Ltd.)
- Published
- 2021
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23. Concomitant positive patch test reactions in FreeStyle-allergic patients sensitized to isobornyl acrylate.
- Author
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Dendooven E, Foubert K, Goossens A, Gilles P, De Borggraeve W, Pieters L, Lambert J, and Aerts O
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- Adolescent, Adult, Aged, Child, Female, Humans, Insulin Infusion Systems adverse effects, Male, Middle Aged, Odorants, Sesquiterpenes adverse effects, Young Adult, Acrylates adverse effects, Allergens adverse effects, Blood Glucose Self-Monitoring instrumentation, Camphanes adverse effects, Dermatitis, Allergic Contact diagnosis, Dermatitis, Allergic Contact etiology, Patch Tests
- Abstract
Background: Concomitant positive patch test reactions in patients sensitized to isobornyl acrylate (IBOA) have rarely been documented., Objectives: To report concomitant sensitizations in patients with allergic contact dermatitis (ACD) from the glucose sensor FreeStyle Libre and sensitized to IBOA., Methods: In 2019, 26 patients with suspected ACD from FreeStyle Libre were patch tested to a baseline series and to a (meth) acrylate series containing IBOA and 2-phenoxyethyl acrylate (PEA) 0.1% pet. Diabetes devices and patch test preparations were analyzed with gas chromatography - mass spectrometry (GC-MS) for the presence of IBOA and PEA., Results: Of the 26 patients, 18 (69%) were sensitized to IBOA, and eight (44%) and 11 (61%) of these were co-sensitized to sesquiterpene lactones and fragrances, respectively. Ten patients (56%) were co-sensitized to PEA, which, contrary to IBOA, could not be detected in any device. The PEA test material was shown to be contaminated with IBOA., Conclusions: Contact allergy to IBOA appears to be declining and IBOA-sensitized patients are most often co-sensitized to sesquiterpene lactones and fragrances. Vigilance is required when patch testing (acrylate) materials obtained from industry, as these might be contaminated and, hence, alter the results and their interpretation., (© 2020 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)
- Published
- 2021
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24. Stereoselective Reductions of 3-Substituted Cyclobutanones: A Comparison between Experiment and Theory.
- Author
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Deraet X, Voets L, Van Lommel R, Verniest G, De Proft F, De Borggraeve W, and Alonso M
- Abstract
The stereoselective reduction of carbonyls is of key importance in the total synthesis of natural products and in medicinal chemistry. Nevertheless, models for rationalizing the stereoselectivity of the hydride reductions of cyclobutanones toward cyclobutanols are largely lacking, unlike cyclohexanone reductions. In order to elucidate the factors that control the stereoselectivity of these reductions, we have investigated the effect of the reaction temperature, solvent, substituent, and type of reducing agent using a synergistic experimental-computational approach. On the experimental side, the hydride reduction of 3-substituted cyclobutanones was proven to be highly selective for the formation of cis alcohol (>90%), irrespective of the size of the hydride reagent. The pronounced selectivity can be further enhanced by lowering the reaction temperature or decreasing the solvent polarity. On the computational side, density functional theory and noncovalent interaction analysis reveal that torsional strain plays a major role in the preference for the antifacial hydride approach, consistent with the Felkin-Anh model. In the presence of the benzyloxy substituent, the high selectivity for the cis isomer is also driven by repulsive electrostatic interactions in the case of a syn-facial hydride attack. The computed cis/trans ratios are in good agreement with the experimental ones and thus show the potential of computational chemistry for predicting and rationalizing the stereoselectivity of hydride reductions of cyclobutanones.
- Published
- 2020
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25. Identification of fukinolic acid from Cimicifuga heracleifolia and its derivatives as novel antiviral compounds against enterovirus A71 infection.
- Author
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Ma Y, Cong W, Huang H, Sun L, Mai AH, Boonen K, Maryam W, De Borggraeve W, Luo G, Liu Q, Schoofs L, Van Kuppeveld F, Neyts J, Mirabelli C, and Luyten W
- Subjects
- 3C Viral Proteases, Cysteine Endopeptidases, Enterovirus A, Human isolation & purification, Enterovirus Infections drug therapy, Enterovirus Infections virology, Humans, Mass Spectrometry, Medicine, Chinese Traditional, Microbial Sensitivity Tests, Nuclear Magnetic Resonance, Biomolecular, Viral Proteins antagonists & inhibitors, Virus Replication drug effects, Antiviral Agents pharmacology, Boraginaceae chemistry, Caffeic Acids pharmacology, Cimicifuga chemistry, Enterovirus A, Human drug effects, Phenylacetates pharmacology, Plant Extracts pharmacology, Succinates pharmacology
- Abstract
Human enterovirus 71 (EV-A71) infections cause a wide array of diseases ranging from diarrhoea and rashes to hand-foot-and-mouth disease and, in rare cases, severe neurological disorders. No specific antiviral drug therapy is currently available. Extracts from 75 Chinese medicinal plants selected for antiviral activity based on the Chinese pharmacopeia and advice from traditional Chinese medicine clinicians were tested for activity against EV-A71. The aqueous extract of the rhizome of Cimicifuga heracleifolia (Sheng Ma) and Arnebia euchroma (Zi Cao) showed potent antiviral activity. The active fractions were isolated by bioassay-guided purification, and identified by a combination of high-resolution mass spectrometry and nuclear magnetic resonance. Fukinolic acid and cimicifugic acid A and J, were identified as active anti-EV-A71 compounds for C. heracleifolia, whereas for A. euchroma, two caffeic acid derivatives were tentatively deduced. Commercially available fukinolic acid analogues such as L-chicoric acid and D-chicoric also showed in vitro micromolar activity against EV-A71 lab-strain and clinical isolates., (Copyright © 2018 Elsevier B.V. and International Society of Chemotherapy. All rights reserved.)
- Published
- 2019
- Full Text
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26. Chemical structure and biological properties of sulfated fucan from the sequential extraction of subAntarctic Lessonia sp (Phaeophyceae).
- Author
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Leal D, Mansilla A, Matsuhiro B, Moncada-Basualto M, Lapier M, Maya JD, Olea-Azar C, and De Borggraeve WM
- Subjects
- Animals, Carbohydrate Sequence, Free Radical Scavengers chemistry, Free Radical Scavengers isolation & purification, Mice, Phaeophyceae chemistry, Polysaccharides chemistry, Polysaccharides isolation & purification, RAW 264.7 Cells, Sulfuric Acid Esters chemistry, Sulfuric Acid Esters isolation & purification, Trypanocidal Agents chemistry, Trypanocidal Agents isolation & purification, Trypanosoma cruzi drug effects, Free Radical Scavengers pharmacology, Polysaccharides pharmacology, Sulfuric Acid Esters pharmacology, Trypanocidal Agents pharmacology
- Abstract
This work is related to the structural characterization of the sulfated polysaccharide from Lessonia sp and the study of its antioxidant and antiparasitic properties. Sequential extraction afforded D-mannitol as the only low MW sugar alcohol. Extraction with 2% CaCl
2 afforded in 3.0% yield, a sulfated fucan (SF). Its major fraction (48.5% yield), isolated by ion-exchange chromatography corresponds to a linear polymer of α-l-fucopyranosil residues linked 1→3, sulfated at the O-4 and partially at O-2 positions. By alkaline extraction, sodium alginate (10.3% yield) was obtained. The antioxidant capacity of SF by ESR showed high elimination index (IC50 , mg/mL) of hydroxyl (0.27), alkoxy (10.05), and peroxyl (82.88) radicals in relation to commercial mannitol. SF showed activity against the epimastigote form of Trypanosoma cruzi parasite (250 μg/mL) and low cytotoxicity in murine cells (367 μg/mL). The elimination capacity of radicals in aqueous medium of SF would allow its potential biomedical application., (Copyright © 2018 Elsevier Ltd. All rights reserved.)- Published
- 2018
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27. Bioassay-guided isolation of three anthelmintic compounds from Warburgia ugandensis Sprague subspecies ugandensis, and the mechanism of action of polygodial.
- Author
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Liu M, Kipanga P, Mai AH, Dhondt I, Braeckman BP, De Borggraeve W, and Luyten W
- Subjects
- Animals, Anthelmintics chemistry, Caenorhabditis elegans ultrastructure, Cell Survival drug effects, Dose-Response Relationship, Drug, HEK293 Cells, Humans, Inhibitory Concentration 50, Mice, Molecular Structure, RAW 264.7 Cells, Sesquiterpenes chemistry, Structure-Activity Relationship, alpha-Linolenic Acid chemistry, alpha-Linolenic Acid pharmacology, Anthelmintics pharmacology, Biological Assay methods, Caenorhabditis elegans drug effects, Magnoliopsida chemistry, Plant Extracts chemistry, Sesquiterpenes pharmacology
- Abstract
Parasitic helminths continue to pose problems in human and veterinary medicine, as well as in agriculture. Resistance to current anthelmintics has prompted the search for new drugs. Anthelmintic metabolites from medicinal plants could be good anthelmintic drug candidates. However, the compounds active against nematodes have not been identified in most medicinal plants with anthelmintic activity. In this study, we aimed to identify the active compounds against helminths in Warburgia ugandensis Sprague subspecies ugandensis (Canellaceae) and study the underlying mechanism of action. A bioassay-guided isolation of anthelmintic compounds from the plant was performed using a Caenorhabditis elegans (C. elegans) test model with a WMicrotracker instrument to monitor motility. Three active compounds were purified and identified by nuclear magnetic resonance and high resolution MS: warburganal (IC
50 : 28.2 ± 8.6 μM), polygodial (IC50 : 13.1 ± 5.3 μM) and alpha-linolenic acid (ALA, IC50 : 70.1 ± 17.5 μM). A checkerboard assay for warburganal and ALA as well as polygodial and ALA showed a fractional inhibitory concentration index of 0.41 and 0.37, respectively, suggesting that polygodial and ALA, as well as warburganal and ALA, have a synergistic effect against nematodes. A preliminary structure-activity relationship study for polygodial showed that the α,β-unsaturated 1,4-dialdehyde structural motif is essential for the potent activity. None of a panel of C. elegans mutant strains, resistant against major anthelmintic drug classes, showed significant resistance to polygodial, implying that polygodial may block C. elegans motility through a mechanism which differs from that of currently marketed drugs. Further measurements showed that polygodial inhibits mitochondrial ATP synthesis of C. elegans in a dose-dependent manner (IC50 : 1.8 ± 1.0 μM). Therefore, we believe that the underlying mechanism of action of polygodial is probably inhibition of mitochondrial ATP synthesis. In conclusion, polygodial could be a promising anthelmintic drug candidate worth considering for further development., (Copyright © 2018 Australian Society for Parasitology. Published by Elsevier Ltd. All rights reserved.)- Published
- 2018
- Full Text
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28. Methylated flavonoids as anti-seizure agents: Naringenin 4',7-dimethyl ether attenuates epileptic seizures in zebrafish and mouse models.
- Author
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Copmans D, Orellana-Paucar AM, Steurs G, Zhang Y, Ny A, Foubert K, Exarchou V, Siekierska A, Kim Y, De Borggraeve W, Dehaen W, Pieters L, and de Witte PAM
- Subjects
- Animals, Anticonvulsants metabolism, Dose-Response Relationship, Drug, Epilepsy chemically induced, Epilepsy metabolism, Flavanones metabolism, Flavonoids metabolism, Male, Methyl Ethers metabolism, Mice, Mice, Inbred C57BL, Seizures chemically induced, Seizures metabolism, Zebrafish, Anticonvulsants therapeutic use, Epilepsy prevention & control, Flavanones therapeutic use, Flavonoids therapeutic use, Methyl Ethers therapeutic use, Seizures prevention & control
- Abstract
Epilepsy is a neurological disease that affects more than 70 million people worldwide and is characterized by the presence of spontaneous unprovoked recurrent seizures. Existing anti-seizure drugs (ASDs) have side effects and fail to control seizures in 30% of patients due to drug resistance. Hence, safer and more efficacious drugs are sorely needed. Flavonoids are polyphenolic structures naturally present in most plants and consumed daily with no adverse effects reported. These structures have shown activity in several seizure and epilepsy animal models through allosteric modulation of GABA
A receptors, but also via potent anti-inflammatory action in the brain. As such, dietary flavonoids offer an interesting source for ASD and anti-epileptogenic drug (AED) discovery, but their pharmaceutical potential is often hampered by metabolic instability and low oral bioavailability. It has been argued that their drug-likeness can be improved via methylation of the free hydroxyl groups, thereby dramatically enhancing metabolic stability and membrane transport, facilitating absorption and highly increasing bioavailability. Since no scientific data is available regarding the use of methylated flavonoids in the fight against epilepsy, we studied naringenin (NRG), kaempferol (KFL), and three methylated derivatives, i.e., naringenin 7-O-methyl ether (NRG-M), naringenin 4',7-dimethyl ether (NRG-DM), and kaempferide (4'-O-methyl kaempferol) (KFD) in the zebrafish pentylenetetrazole (PTZ) seizure model. We demonstrate that the methylated flavanones NRG-DM and NRG-M are highly effective against PTZ-induced seizures in larval zebrafish, whereas NRG and the flavonols KFL and KFD possess only a limited activity. Moreover, we show that NRG-DM is active in two standard acute mouse seizure models, i.e., the timed i.v. PTZ seizure model and the 6-Hz psychomotor seizure model. Based on these results, NRG-DM is proposed as a lead compound that is worth further investigation for the treatment of generalized seizures and drug-resistant focal seizures. Our data therefore highlights the potential of methylated flavonoids in the search for new and improved ASDs., (Copyright © 2017 Elsevier Ltd. All rights reserved.)- Published
- 2018
- Full Text
- View/download PDF
29. Crystal structure of 5-benzyl-8-bromo-2-meth-yl-1,3-oxazolo[4,5- c ][1,8]naphthyridin-4(5 H )-one.
- Author
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Vrijdag J, Van den Bogaert A, De Borggraeve W, and Van Meervelt L
- Abstract
The title compound, C
17 H12 BrN3 O2 , was unexpectedly isolated during an attempt to synthesize pyridodiazepinediones and identified as an oxazolonaphthyridinone derivative. The almost planar oxazolonaphthyridinone ring (r.m.s. deviation = 0.016 Å) makes a dihedral angle of 61.6 (2)° with the phenyl ring. In the crystal, columns of mol-ecules stacked along the a axis are formed by π-π inter-actions between the six-membered rings of the oxazolonaphthyridone moieties [centroid-to-centroid distances = 3.494 (2)-3.906 (3) Å], which further inter-act through C-H⋯π contacts with the phenyl rings.- Published
- 2017
- Full Text
- View/download PDF
30. The orthorhombic pseudopolymorph of tacrine hydrochloride.
- Author
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Jacobs J, Moris M, De Samber T, Vrijdag J, De Borggraeve W, and Van Meervelt L
- Subjects
- Cholinesterase Inhibitors chemistry, Crystallization, Crystallography, X-Ray, Hydrogen Bonding, Molecular Structure, Models, Molecular, Tacrine chemistry
- Abstract
Crystallization of tacrine hydrochloride, an acetylcholinesterase inhibitor used during treatment of mild to moderate Alzheimer's disease, from a water:ethanol solution has resulted in an orthorhombic pseudopolymorph. This orthorhombic form which occurs as a dihydrate shows columns of stacking acridines together with continuous Cl-O
water -Owater -Cl chains and ladder-like ribbons composed of squares and hexagons.- Published
- 2016
- Full Text
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31. The zeamine antibiotics affect the integrity of bacterial membranes.
- Author
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Masschelein J, Clauwers C, Stalmans K, Nuyts K, De Borggraeve W, Briers Y, Aertsen A, Michiels CW, and Lavigne R
- Subjects
- Anti-Bacterial Agents metabolism, Cell Membrane physiology, DNA biosynthesis, Macrolides metabolism, Metabolic Networks and Pathways drug effects, Models, Molecular, Molecular Conformation, Polyamines metabolism, Protein Biosynthesis drug effects, Serratia metabolism, Anti-Bacterial Agents pharmacology, Cell Membrane drug effects, Escherichia coli drug effects, Macrolides pharmacology, Microbial Viability drug effects, Permeability drug effects, Polyamines pharmacology, Staphylococcus aureus drug effects
- Abstract
The zeamines (zeamine, zeamine I, and zeamine II) constitute an unusual class of cationic polyamine-polyketide-nonribosomal peptide antibiotics produced by Serratia plymuthica RVH1. They exhibit potent bactericidal activity, killing a broad range of Gram-negative and Gram-positive bacteria, including multidrug-resistant pathogens. Examination of their specific mode of action and molecular target revealed that the zeamines affect the integrity of cell membranes. The zeamines provoke rapid release of carboxyfluorescein from unilamellar vesicles with different phospholipid compositions, demonstrating that they can interact directly with the lipid bilayer in the absence of a specific target. DNA, RNA, fatty acid, and protein biosynthetic processes ceased simultaneously at subinhibitory levels of the antibiotics, presumably as a direct consequence of membrane disruption. The zeamine antibiotics also facilitated the uptake of small molecules, such as 1-N-phenylnaphtylamine, indicating their ability to permeabilize the Gram-negative outer membrane (OM). The valine-linked polyketide moiety present in zeamine and zeamine I was found to increase the efficiency of this process. In contrast, translocation of the large hydrophilic fluorescent peptidoglycan binding protein PBDKZ-GFP was not facilitated, suggesting that the zeamines cause subtle perturbation of the OM rather than drastic alterations or defined pore formation. At zeamine concentrations above those required for growth inhibition, membrane lysis occurred as indicated by time-lapse microscopy. Together, these findings show that the bactericidal activity of the zeamines derives from generalized membrane permeabilization, which likely is initiated by electrostatic interactions with negatively charged membrane components., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
- Full Text
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32. Synthesis of triterpenoid triazine derivatives from allobetulone and betulonic acid with biological activities.
- Author
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Dinh Ngoc T, Moons N, Kim Y, De Borggraeve W, Mashentseva A, Andrei G, Snoeck R, Balzarini J, and Dehaen W
- Subjects
- Animals, Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Antiviral Agents chemical synthesis, Antiviral Agents chemistry, Cell Line, Tumor, Cell Proliferation drug effects, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, HeLa Cells, Humans, Microbial Sensitivity Tests, Molecular Conformation, Oleanolic Acid chemistry, Structure-Activity Relationship, Triazines chemical synthesis, Triazines chemistry, Triterpenes chemical synthesis, Triterpenes chemistry, Antineoplastic Agents pharmacology, Antiviral Agents pharmacology, DNA Viruses drug effects, Oleanolic Acid analogs & derivatives, RNA Viruses drug effects, Triazines pharmacology, Triterpenes pharmacology
- Abstract
The synthetic transformation and modification of natural products with the aim to improve the biological properties is an area of current interest. The triterpenoids betulin and betulinic acid are very abundant in nature and now are commercially available. In our study, starting from betulin and betulinic acid, we obtained allobetulone and betulonic acid in a few synthetic steps. The ketone function at the A-ring was used as the starting point for the synthesis of a series of 1,2,4-triazine-fused triterpenoids. The alkylation and Liebeskind-Srogl coupling were used for further substitution of 1,2,4-triazines, and the intramolecular hetero Diels-Alder reaction leads to interesting fused thienopyridine derivatives. All new compounds were tested for their cytostatic activities against murine leukemia L1210, human cervix carcinoma HeLa and human lymphoblast CEM tumor cells. The results show that some triterpenoid triazine betulonic acid derivatives have a promising cytostatic activity in vitro and could be used as potential leads for the development of new type of anti-cancer agents. Several compounds were also endowed with anti-HCMV activity in the low micromolar range., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
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33. Tanshinone IIA exhibits anticonvulsant activity in zebrafish and mouse seizure models.
- Author
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Buenafe OE, Orellana-Paucar A, Maes J, Huang H, Ying X, De Borggraeve W, Crawford AD, Luyten W, Esguerra CV, and de Witte P
- Subjects
- Abietanes physiology, Abietanes therapeutic use, Alzheimer Disease drug therapy, Animals, Anticonvulsants therapeutic use, Brain Ischemia drug therapy, Disease Models, Animal, Disease Progression, Fertilization in Vitro drug effects, Injections, Intraventricular, Larva drug effects, Male, Mice, Microinjections, Neuroprotective Agents administration & dosage, Neuroprotective Agents therapeutic use, Pentylenetetrazole administration & dosage, Pentylenetetrazole toxicity, Plant Extracts administration & dosage, Plant Extracts therapeutic use, Plant Roots chemistry, Proto-Oncogene Proteins c-fos antagonists & inhibitors, Proto-Oncogene Proteins c-fos biosynthesis, Salvia miltiorrhiza chemistry, Seizures diagnosis, Seizures mortality, Small Molecule Libraries administration & dosage, Small Molecule Libraries therapeutic use, Zebrafish embryology, Abietanes administration & dosage, Anticonvulsants administration & dosage, Drugs, Chinese Herbal therapeutic use, Medicine, Chinese Traditional methods, Pentylenetetrazole antagonists & inhibitors, Seizures drug therapy
- Abstract
Danshen or Chinese red sage (Salvia miltiorrhiza, Bunge) is used by traditional Chinese medicine (TCM) practitioners to treat neurological, cardiovascular, and cerebrovascular disorders and is included in some TCM formulations to control epileptic seizures. In this study, acetonic crude extracts of danshen inhibited pentylenetetrazol (PTZ)-induced seizure activity in zebrafish larvae. Subsequent zebrafish bioassay-guided fractionation of the extract resulted in the isolation of four major tanshinones, which suppressed PTZ-induced activity to varying degrees. One of the active tanshinones, tanshinone IIA, also reduced c-fos expression in the brains of PTZ-exposed zebrafish larvae. In rodent seizure models, tanshinone IIA showed anticonvulsive activity in the mouse 6-Hz psychomotor seizure test in a biphasic manner and modified seizure thresholds in a complex manner for the mouse i.v. PTZ seizure assay. Interestingly, tanshinone IIA is used as a prescription drug in China to address cerebral ischemia in patients. Here, we provide the first in vivo evidence demonstrating that tanshinone IIA has anticonvulsant properties as well.
- Published
- 2013
- Full Text
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34. Preparation and characterization of hydrogels based on homopolymeric fractions of sodium alginate and PNIPAAm.
- Author
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Leal D, De Borggraeve W, Encinas MV, Matsuhiro B, and Müller R
- Subjects
- Acrylic Resins chemical synthesis, Acrylic Resins chemistry, Biocompatible Materials chemical synthesis, Biocompatible Materials chemistry, Drug Carriers chemical synthesis, Drug Carriers chemistry, Glucuronic Acid chemical synthesis, Glucuronic Acid chemistry, Hexuronic Acids chemical synthesis, Hexuronic Acids chemistry, Humans, Materials Testing, Surface Properties, Temperature, Acrylamides chemical synthesis, Acrylamides chemistry, Alginates chemical synthesis, Alginates chemistry, Hydrogels chemical synthesis, Hydrogels chemistry, Polymers chemical synthesis, Polymers chemistry
- Abstract
Graft copolymers were prepared by formation of an amide bond between poly-α-L-guluronic acid (MW 24,000), isolated from sodium alginate and the free amino group of PNIPAAm-NH(2). SEM micrographs revealed the formation of a macroscopic network on the surface of the grafted hydrogels with a porosity diameter of 10-20 μm. Semi-IPN hydrogels were prepared using different proportions of sodium poly-β-D-mannuronate (MW 21,000), isolated from sodium alginate and cross-linked PNIPAAm-NH(2) polymers. SEM micrographs showed porosities of minor size (∼5 μm). Though both types of hydrogels are good water containers, the water retention capacity of graft copolymers is more than 50% higher than that of semi-IPN hydrogels. Both hydrogel types showed significant changes in swelling ratios between 20 and 45 °C: the swelling ratio decreases near the LCST of PNIPAAm. The water absorption and retention capacity of graft hydrogels increases with pH, reaching a maximum value at pH 7.0., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
35. Tetranuclear d-f metallostars: synthesis, relaxometric, and luminescent properties.
- Author
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Dehaen G, Eliseeva SV, Verwilst P, Laurent S, Vander Elst L, Muller RN, De Borggraeve W, Binnemans K, and Parac-Vogt TN
- Abstract
A novel ditopic ligand DTPA-ph-phen, based on 1,10-phenanthroline and diethylenetriaminepentaacetic acid (DTPA) units, has been designed and fully characterized by (1)H, (13)C, and 2D-COSY NMR spectroscopy, IR and electrospray ionization mass spectrometry (ESI-MS) techniques. The DTPA core of the ligand specifically binds Ln(III) ions (Ln = Eu, Gd) resulting in formation of the [Ln{DTPA-ph-phen}(H(2)O)](-) complex. The photophysical properties of the Eu(III) compound have been investigated, and the complex shows characteristic red luminescence with an overall quantum yield of 2.2%. Reaction of [Gd{DTPA-ph-phen}(H(2)O)](-) with Ru(II) leads to further self-assembly into a heterobimetallic metallostar complex containing Gd(III) and Ru(II) in a 3:1 ratio. This tetranuclear [(Gd{DTPA-ph-phen})(3)(H(2)O)(3)Ru](-) complex (Gd(3)Ru), formed by the coordination of Ru(II) to the 1,10-phenanthroline unit, has been characterized by a range of experimental techniques and evaluated toward its feasibility as a potential bimodal optical/MRI agent. The Gd(3)Ru metallostar shows intense metal-to-ligand charge transfer (MLCT) transition resulting in intense light absorption in the visible spectral region. Upon irradiation into this MLCT band at 450 nm, the Gd(3)Ru complex exhibits red broad-band luminescence in the range of 550-800 nm centered at 610 nm with a quantum yield of 4.8%. Proton nuclear magnetic relaxation dispersion (NMRD) measurements indicate that the Gd(3)Ru complex exhibits an enhanced relaxivity value r(1) of 36.0 s(-1) mM(-1) per metallostar molecule at 20 MHz and 310 K. The ability of the complex to noncovalently bind to human serum albumin (HSA) was investigated, but no significant interaction was detected.
- Published
- 2012
- Full Text
- View/download PDF
36. Anticonvulsant activity of bisabolene sesquiterpenoids of Curcuma longa in zebrafish and mouse seizure models.
- Author
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Orellana-Paucar AM, Serruys AS, Afrikanova T, Maes J, De Borggraeve W, Alen J, León-Tamariz F, Wilches-Arizábala IM, Crawford AD, de Witte PA, and Esguerra CV
- Subjects
- Analysis of Variance, Animals, Animals, Genetically Modified, Chromatography, High Pressure Liquid, Convulsants toxicity, Disease Models, Animal, Dose-Response Relationship, Drug, Drug Administration Routes, Electroencephalography, Green Fluorescent Proteins genetics, Magnetic Resonance Spectroscopy, Male, Mass Spectrometry, Mice, Mice, Inbred C57BL, Movement drug effects, Pentylenetetrazole toxicity, Plant Extracts chemistry, Seizures chemically induced, Valproic Acid therapeutic use, Zebrafish, Anticonvulsants therapeutic use, Curcuma chemistry, Phytotherapy methods, Plant Extracts therapeutic use, Seizures drug therapy
- Abstract
Turmeric, obtained from the rhizomes of Curcuma longa, is used in South Asia as a traditional medicine for the treatment of epilepsy. To date, in vivo studies on the anticonvulsant activity of turmeric have focused on its principal curcuminoid, curcumin. However, poor absorption and rapid metabolism have limited the therapeutic application of curcumin in humans. To explore the therapeutic potential of turmeric for epilepsy further, we analyzed its anticonvulsant activity in a larval zebrafish seizure assay. Initial experiments revealed that the anticonvulsant activity of turmeric in zebrafish larvae cannot be explained solely by the effects of curcumin. Zebrafish bioassay-guided fractionation of turmeric identified bisabolene sesquiterpenoids as additional anticonvulsants that inhibit PTZ-induced seizures in both zebrafish and mice. Here, we present the first report of the anticonvulsant properties of bisabolene sesquiterpenoids and provide evidence which warrants further investigation toward the mechanistic understanding of their neuromodulatory activity., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
37. The C terminus of Bax inhibitor-1 forms a Ca2+-permeable channel pore.
- Author
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Bultynck G, Kiviluoto S, Henke N, Ivanova H, Schneider L, Rybalchenko V, Luyten T, Nuyts K, De Borggraeve W, Bezprozvanny I, Parys JB, De Smedt H, Missiaen L, and Methner A
- Subjects
- Animals, Calcium chemistry, Calcium Channels chemistry, Calcium Channels genetics, Endoplasmic Reticulum chemistry, Endoplasmic Reticulum genetics, Evolution, Molecular, HeLa Cells, Humans, Intracellular Membranes chemistry, Lipid Bilayers chemistry, Lipid Bilayers metabolism, Membrane Proteins chemistry, Membrane Proteins genetics, Mice, Peptide Mapping, Peptides chemistry, Peptides genetics, Peptides metabolism, Plants chemistry, Plants genetics, Plants metabolism, Protein Structure, Secondary, Protein Structure, Tertiary, Yeasts chemistry, Yeasts genetics, Yeasts metabolism, Calcium metabolism, Calcium Channels metabolism, Endoplasmic Reticulum metabolism, Intracellular Membranes metabolism, Membrane Proteins metabolism
- Abstract
Bax inhibitor-1 (BI-1) is a multitransmembrane domain-spanning endoplasmic reticulum (ER)-located protein that is evolutionarily conserved and protects against apoptosis and ER stress. Furthermore, BI-1 is proposed to modulate ER Ca(2+) homeostasis by acting as a Ca(2+)-leak channel. Based on experimental determination of the BI-1 topology, we propose that its C terminus forms a Ca(2+) pore responsible for its Ca(2+)-leak properties. We utilized a set of C-terminal peptides to screen for Ca(2+) leak activity in unidirectional (45)Ca(2+)-flux experiments and identified an α-helical 20-amino acid peptide causing Ca(2+) leak from the ER. The Ca(2+) leak was independent of endogenous ER Ca(2+)-release channels or other Ca(2+)-leak mechanisms, namely translocons and presenilins. The Ca(2+)-permeating property of the peptide was confirmed in lipid-bilayer experiments. Using mutant peptides, we identified critical residues responsible for the Ca(2+)-leak properties of this BI-1 peptide, including a series of critical negatively charged aspartate residues. Using peptides corresponding to the equivalent BI-1 domain from various organisms, we found that the Ca(2+)-leak properties were conserved among animal, but not plant and yeast orthologs. By mutating one of the critical aspartate residues in the proposed Ca(2+)-channel pore in full-length BI-1, we found that Asp-213 was essential for BI-1-dependent ER Ca(2+) leak. Thus, we elucidated residues critically important for BI-1-mediated Ca(2+) leak and its potential channel pore. Remarkably, one of these residues was not conserved among plant and yeast BI-1 orthologs, indicating that the ER Ca(2+)-leak properties of BI-1 are an added function during evolution.
- Published
- 2012
- Full Text
- View/download PDF
38. Measuring cooperative Rev protein-protein interactions on Rev responsive RNA by fluorescence resonance energy transfer.
- Author
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Vercruysse T, Pawar S, De Borggraeve W, Pardon E, Pavlakis GN, Pannecouque C, Steyaert J, Balzarini J, and Daelemans D
- Subjects
- Gene Products, rev genetics, Genes, env genetics, HIV-1 genetics, Mutation, Protein Binding, Protein Interaction Domains and Motifs genetics, RNA Transport, RNA, Viral genetics, Fluorescence Resonance Energy Transfer methods, Gene Products, rev metabolism, HIV-1 metabolism, Protein Multimerization
- Abstract
The export of viral RNA from the nucleus to the cytoplasm of the cellular host is a crucial step in the life cycle of HIV-1 that is mediated by the viral Rev protein. One aspect of the Rev function, its multimerization, is still unexplored as a target for antiviral therapy. This is partly due to the lack of a fast and solid system to measure Rev multimerization. We have developed a high throughput in vitro Rev multimerization assay based on fluorescence resonance energy transfer (FRET) in which real-time Rev-Rev interactions can be measured both in the absence and the presence of Rev specific RRE RNA. Well-characterized Rev multimerization deficient mutants showed reduced FRET as well as unlabeled Rev molecules were able to inhibit the FRET signal demonstrating the specificity of the assay. Upon multimerization along RRE RNA the FRET signal significantly increased but dropped again at equimolar Rev/RRE ratios suggesting that in this condition most Rev molecules are bound as monomers to the RRE. Furthermore, using this assay, we demonstrate that a previously selected llama heavy-chain only antibody was shown to not only prevent the development of Rev multimers but also disassemble the already formed complexes confirming the dynamic nature of the Rev-Rev interactions. The in vitro FRET based multimerization assay facilitates the further study of the basic mechanism of cooperative Rev multimerization along the RRE and is also widely applicable to study the assembly of other functional complexes involving protein homo-multimerization or cooperative protein-protein interactions on RNA or DNA.
- Published
- 2011
- Full Text
- View/download PDF
39. Triple Hyp→Pro replacement in integramide A, a peptaib inhibitor of HIV-1 integrase: Effect on conformation and bioactivity.
- Author
-
De Zotti M, De Borggraeve W, Kaptein B, Broxterman QB, Singh SB, Felock PJ, Hazuda DJ, Formaggio F, and Toniolo C
- Subjects
- Amino Acid Sequence, Circular Dichroism, HIV-1 drug effects, HIV-1 enzymology, Humans, Hydroxyproline chemistry, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Proline chemistry, Protein Conformation, Protein Structure, Secondary, Spectroscopy, Fourier Transform Infrared, Structure-Activity Relationship, HIV Integrase Inhibitors chemistry, HIV Integrase Inhibitors pharmacology, Oligopeptides chemistry, Oligopeptides pharmacology
- Abstract
AIDS is produced by HIV-induced infections. HIV integrase is an important enzyme as it is critical for the integration of the HIV genome into that of the host cell. This complex process is exclusively carried out by a viral enzyme not found in the host cell. Therefore, this protein represents a safe target for the development of single or combined anti-HIV therapy. Integramide A is a 16-mer long, effective peptaib inhibitor of HIV-1 integrase. We have previously described a versatile synthetic strategy in solution to afford this natural compound and its diastereomer at positions 14 and 15. We also found that both peptides display a significant inhibitory activity. Here, we present our data on the synthesis in solution, in-depth conformational analysis, and biological activity against HIV-integrase of the analogs of the two above mentioned peptides in which all of the three (2S,4R)-Hyp residues at positions 2, 9, and 13 are replaced by L-Pro. This study definitely confirms that the mixed α-/3(10) - helical conformation of natural integramide A plays a key role in its mechanism of inhibition. Moreover, our data provide evidence that the amphipathic character of this helical structure is not required for the activity of integramide A against HIV-1 integrase. These observations will hopefully help us to further clarify the precise mechanism of inhibition of this interesting peptaib and to identify shorter peptide sequences active against HIV-1 integrase., (Copyright © 2010 Wiley Periodicals, Inc.)
- Published
- 2011
- Full Text
- View/download PDF
40. High-speed microwave-promoted hetero-Diels-Alder reactions of 2(1H)-pyrazinones in ionic liquid doped solvents.
- Author
-
Van Der Eycken E, Appukkuttan P, De Borggraeve W, Dehaen W, Dallinger D, and Kappe CO
- Abstract
Inter- and intramolecular hetero-Diels-Alder reactions in a series of functionalized 2(1H)-pyrazinones were investigated under controlled microwave irradiation. The cycloaddition reactions were efficiently performed in sealed tubes, utilizing either a combination of 1,2-dichloroethane and a thermally stable ionic liquid, or 1,2-dichlorobenzene as reaction medium. In all cases, a significant rate-enhancement using microwave flash heating as compared to thermal heating was observed.
- Published
- 2002
- Full Text
- View/download PDF
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