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Here, for the first time, we developed a catalytic composite by forming a thin layer of a cross-linked hyperbranched pyridylphenylene polymer (PPP) on the surface of mesoporous magnetic silica (Fe3...

Fibrin plays a critical role in wound healing and hemostasis, yet it is also the main case of cardiovascular diseases and thrombosis. Here, we show the unique design of Au-Cu@PANI alloy core-shell rods for fibrin clot degradation. Microscopic (transmission electron microscopy (TEM), scanning transmission electron microscopy-energy-dispersive X-ray (STEM-EDX)) and structural characterizations (powder X-ray diffraction (PXRD), X-ray photoelectron spectroscopy (XPS)) of the Au-Cu@PANI hybrid material reveal the formation of Au-Cu heterogeneous alloy core rods (aspect ratio = 3.7) with thin Cu

Rigid pyridylphenylene dendrons were shown to successfully function as capping molecules for stabilization of both magnetite and Pd nanoparticles (NPs) to form hydrophobic, magnetically recoverable catalysts. However, syntheses in colloidal solutions require large amounts of dendrons and are difficult to scale up. Here, we developed a strategy for the nanocomposite formation by immobilization of the pyridylphenylene dendrons (D) on magnetic silica (Fe3O4-SiO2, MS) surface via the formation of ether or amide bonds, depending on the structure of flexible linkers on the MS surface and dendron focal groups. Both approaches allow attachment of small amounts of the dendrons with high surface coverage and impart amphiphilicity to the final composite. After the binding to the MS surface, the dendron pyridine moieties readily complex with Pd acetate, leading to a “cocktail” of Pd2+ and Pd0 species (the latter forming Pd NPs) due to partial reduction by composite functional groups. The MS-D-Pd nanocomposites were tested in the model Suzuki-Miyaura cross-coupling reaction of 4-Br-anisole and phenylboronic acid to evaluate their performance in hydrophilic conditions. MS-D-Pd demonstrated excellent performance, even at a very small amount of the catalyst, which is assigned to exceptional stabilization by dendritic ligands, allowing prevention of the metal leaching and preservation of catalytic properties upon magnetic separation. The immobilization of rigid hydrophobic dendrons on the hydrophilic magnetic support may allow one to extend the scope of catalytic reactions due to catalyst amphiphilicity.

Scientific applications built on wide-area distributed systems such as emerging cloud based architectures and the legacy grid computing infrastructure often struggle with user adoption even though they succeed from a systems research perspective. This paper examines the coupling of user-centered design processes with modern distributed systems. Further in this paper, we describe approaches for conceptualizing a product that solves a recognized need: to develop a data gateway to serve the data management and research needs of experimentalists of electron microscopes and similar shared scientific instruments in the context of a research service laboratory. The purpose of the data gateway is to provide secure, controlled access to data generated from a wide range of scientific instruments. From the functional perspective, we focus on the basic processing of raw data that underlies the lab’s "business" processes, the movement of data from the laboratory to central access and archival storage points, and the distribution of data to respective authorized users. Through the gateway interface, users will be able to share the instrument data with collaborators or copy it to remote storage servers. Basic pipelines for extracting additional metadata (through a pluggable parser framework) will be enabled. The core contribution described in this paper, building on the aforementioned distributed data management capabilities, is the adoption of user-centered design processes for developing the scientific user interface. We describe the user-centered design methodology for exploring user needs, iteratively testing the design, learning from user experiences, and adapting what we learn to improve design and capabilities. We further conclude that user-centered design is, in turn, best enabled by an adaptable distributed systems framework. A key challenge to implementing a user-centered design is to have design tools closely linked with a software system architecture that can evolve over time while providing a highly available data gateway. A key contribution of this paper is to share the insights from crafting such an evolvable design-build-evaluate-deploy architecture and plans for iterative development and deployment.

Here, we report a one-pot solvothermal method for the development of magnetically recoverable catalysts with Ru or Ag nanoparticles (NPs) capped by chitosan (CS), a derivative of natural chitin. The formation of iron oxide NPs was carried out in situ in the presence of CS and iron acetylacetonate in boiling triethyleneglycol (TEG) due to CS solubilization in warm TEG. Coordination with Ru or Ag species and the NP formation take place in the same reaction solution, eliminating intermediate steps. In optimal conditions the method developed allows stabilization of 2.2 nm monodisperse Ru NPs (containing both Ru0 and Ru4+ species) that are evenly distributed through the catalyst, while for Ag NPs, this stabilizing medium is inferior, leading to exceptionally large Ag nanocrystals. Catalytic testing of CS-Ru magnetically recoverable catalysts in the reduction of 4-nitrophenol to 4-aminophenol with excess NaBH4 revealed that the catalyst with 2.2 nm Ru NPs exhibits the highest catalytic activity compared to samples with larger Ru NPs (2.9–3.2 nm). Moreover, this catalyst displayed extraordinary shelf-life in the aqueous solution (up to ten months) and excellent reusability in ten consecutive reactions with easy magnetic separation at each step which were assigned to its conformational rigidity at a constant pH. These characteristics as well as favorable environmental factors of the catalyst fabrication, make it promising for nitroarene reduction.

Here, we developed magnetically recoverable biocatalysts for enzymatic oxidation of d-glucose to d-gluconic acid with high product yields. The catalyst support is based on nanoparticle clusters (NPCs) composed of magnetite particles and coated with the amino terminated silica layer to facilitate further functionalization. It involves the attachment of the glutaraldehyde linker followed by the covalent attachment of glucose oxidase (GOx) via its amino groups. It was established that the NPCs with a diameter of ∼430 nm attach 33% more GOx molecules than NPCs with a diameter of ∼285 nm, although the surface area of the former is lower than that of the latter. At the same time, the biocatalyst based on the smaller NPCs shows higher relative activity of 94% than that (87%) of the biocatalyst based on the larger NPCs, both at 50 °C and pH 7 (optimal reaction conditions). This surprising result has been explained by a combination of two major factors such as GOx crowding on the support surface which should preve...

Inulin is a naturally occurring polysaccharide, widely available as plant biomass. Here, we report utilization of a magnetically separable Ru-containing catalyst based on magnetic silica (Fe3O4-SiO2) in the inulin hydrolytic hydrogenation to mannitol (a sweetener used in diabetic foods). The influence of the reaction parameters on the selectivity to mannitol has been studied. Under the optimal conditions the maximum selectivity to mannitol reached 44.3% at 100% conversion of the initial polysaccharide, exceeding that obtained with conventional Ru/C. The catalyst used in this work is stable under hydrothermal conditions of the process. It can be easily magnetically separated from the reaction mixture and reused without any loss of selectivity and activity, making this catalyst promising for practical applications in biomass conversion.

Here, we report transfer hydrogenation of nitroarenes to aminoarenes using 2-propanol as a hydrogen source and Ag-containing magnetically recoverable catalysts based on partially reduced graphene oxide (pRGO) sheets. X-ray diffraction and X-ray photoelectron spectroscopy data demonstrated that, during the one-pot catalyst synthesis, formation of magnetite nanoparticles (NPs) is accompanied by the reduction of graphene oxide (GO) to pRGO. The formation of Ag0 NPs on top of magnetite nanoparticles does not change the pRGO structure. At the same time, the catalyst structure is further modified during the transfer hydrogenation, leading to a noticeable increase of sp2 carbons. These carbons are responsible for the adsorption of substrate and intermediates, facilitating a hydrogen transfer from Ag NPs and creating synergy between the components of the catalyst. The nitroarenes with electron withdrawing and electron donating substituents allow for excellent yields of aniline derivatives with high regio and chem...

Here, we present a controlled synthesis of Mn-doped ZnO nanoparticles (NPs) with predominantly nail-like shapes, whose formation occurs via tip-to-base-oriented attachment of initially formed nanopyramids, followed by leveling of sharp edges that lead to smooth single-crystalline “nails”. This shape is prevalent in noncoordinating solvents such as octadecene and octadecane. Yet, the double bond in the former promotes oriented attachment. By contrast, Mn-doped ZnO NP synthesis in a weakly coordinating solvent, benzyl ether, results in dendritic structures because of random attachment of initial NPs. Mn-doped ZnO NPs possess a hexagonal wurtzite structure, and in the majority of cases, the NP surface is enriched with Mn, indicating a migration of Mn2+ ions to the NP surface during the NP formation. When the NP formation is carried out without the addition of octadecyl alcohol, which serves as a surfactant and a reaction initiator, large, concave pyramid dimers are formed whose attachment takes place via bas...

Here, we report on the development of novel Zn-, Zn-Cr-, and Zn-Cu-containing catalysts using magnetic silica (Fe3O4-SiO2) as the support. Transmission electron microscopy, powder X-ray diffraction, and X-ray photoelectron spectroscopy (XPS) showed that the iron oxide nanoparticles are located in mesoporous silica pores and the magnetite (spinel) structure remains virtually unchanged despite the incorporation of Zn and Cr. According to XPS data, the Zn and Cr species are intermixed within the magnetite structure. In the case of the Zn-Cu-containing catalysts, a separate Cu2O phase was also observed along with the spinel structure. The catalytic activity of these catalysts was tested in methanol synthesis from syngas (CO + H2). The catalytic experiments showed an improved catalytic performance of Zn- and Zn-Cr-containing magnetic silicas compared to that of the ZnO-SiO2 catalyst. The best catalytic activity was obtained for the Zn-Cr-containing magnetic catalyst prepared with 1 wt % Zn and Cr each. X-ray absorption spectroscopy demonstrated the presence of oxygen vacancies near Fe and Zn in Zn-containing, and even more in Zn-Cr-containing, magnetic silica (including oxygen vacancies near Cr ions), revealing a correlation between the catalytic properties and oxygen vacancies. The easy magnetic recovery, robust synthetic procedure, and high catalytic activity make these catalysts promising for practical applications.

Here, we report on the development of novel Cr-containing magnetic oxide nanoparticles (NPs) as catalysts for a syngas-to-methanol reaction which constitutes a sustainable route to obtain value-added chemicals. These NPs have been synthesized in a one-pot reaction by thermal decomposition of Cr acetylacetonate and doping metal acetylacetonates (if used) in the reaction solution of preformed magnetite NPs stabilized by polyphenylquinoxaline. For all the samples, the NP surface is enriched with Cr. At the same time, the Cr species are finely dispersed in the magnetite phase. This exposes Cr catalytic species to reacting molecules and creates an intimate contact between Cr3+ and Fe3O4. As a result, the methanol productivity rate for the Cr-containing magnetic oxide prepared with 0.5 mmol of the Cr precursor is approximately three orders of magnitude higher than that for the conventional Cu/ZnO/Al2O3 catalyst. Additional doping of this Cr-containing magnetic oxide with small amounts of Ni or La leads to even higher catalytic activity (by 40–49%).

We report hydrogenation of furfural (FF) to furfuryl alcohol (FA) with novel Pt-and Pd-containing magnetite nanoparticles (NPs) stabilized by polyphenylquinoxaline (PPQ) and hyperbranched pyridylphenylene polymer (PPP). FF is one of the major ingredients of biooil produced by biomass pyrolysis, while FA is a source of value-added chemicals, thus, creating a sustainable path from biomass to important compounds. We demonstrate that catalytic NPs (Pt0 or Pd0) of approximately 3 nm in diameter form in the polymer shells of magnetite NPs and the catalysts are magnetically recoverable. The search for optimal reaction conditions of the FF hydrogenation revealed that the highest selectivity is obtained at 120 °C and 6 MPa hydrogen pressure in i-propanol as solvent. The solvent effect is due to combination of good FF solubility and accessibility of catalytic NPs for the FF adsorption. A comparison of the catalytic activities of the Pd-containing magnetite NPs stabilized by PPQ and PPP validates the advantages of the open and rigid structure of the hyperbranched PPP vs. linear PPQ. For Pd-containing magnetite NPs stabilized by PPP, the high selectivity to FA of 99.3% at nearly 100% FF conversion was achieved at a remarkable activity of 871 min−1 and high catalyst stability.

The BIN1/Amphiphysin/Rvs (BAR) protein family is an essential part of the cell’s machinery to bend membranes. Bridging integrator 1 (BIN1) is a muscle-enriched BAR protein with an established role in muscle development and skeletal myopathies. Here, we demonstrate that BIN1, on its own, is able to form complex interconnected tubular systems in vitro, reminiscent of t-tubule system in muscle cells. We further describe how BIN1’s electrostatic interactions regulate membrane bending: the ratio of negatively charged lipids in the bilayer altered membrane bending and binding properties of BIN1, and so did the manipulation of BIN1’s surface charge. We show that the electrostatically-mediated BIN1 membrane-binding depended on the membrane curvature - it was less affected in liposomes with high curvature. Curiously, BIN1 membrane binding and bending was diminished in cells where the membrane’s charge was experimentally reduced. Membrane bending was also reduced in BIN1 mutants where negative or positive charges in the BAR domain have been eliminated. This phenotype, characteristic of BIN1 mutants linked to myopathies, was rescued when the membrane charge was made more negative. The latter findings also show that cells can control tubulation at their membranes by simply altering the membrane charge and, through it, the recruitment of BAR proteins and their interaction partners (e.g. dynamin).

Chaperonins are ubiquitous, ATP-dependent protein-folding molecular machines that are essential for all forms of life. Bacteriophage φEL encodes its own chaperonin to presumably fold exceedingly large viral proteins via profoundly different nucleotide-binding conformations. Our structural investigations indicate that ATP likely binds to both rings simultaneously and that a misfolded substrate acts as the trigger for ATP hydrolysis. More importantly, the φEL complex dissociates into two single rings resulting from an evolutionarily altered residue in the highly conserved ATP-binding pocket. Conformational changes also more than double the volume of the single-ring internal chamber such that larger viral proteins are accommodated. This is illustrated by the fact that φEL is capable of folding β-galactosidase, a 116-kDa protein. Collectively, the architecture and protein-folding mechanism of the φEL chaperonin are significantly different from those observed in group I and II chaperonins.

The dendron/dendrimer size was found to strongly influence properties of catalysts based on such macromolecules. Here, we assessed the dendritic effect of third generation pyridylphenylene dendrons (G3) immobilized on magnetic silica and loaded with Pd species in Suzuki-Miyaura reactions of Br-arenes and phenylboronic acid as compared with the second generation dendron (G2) based catalyst. A comprehensive analysis allows decoupling the dendron influence from other parameters identifying a strong positive dendritic effect (higher activity with G3 based composite), attributed to a larger available space and to a greater number of coordinating groups in the G3 to host reacting molecules and stabilize catalytic species. A “local Pd leaching” mechanism for the Suzuki-Miyaura reaction, which occurs in the dendron environment of the catalyst, provides an excellent catalytic activity. This finding along with easy magnetic separation (a remarkable catalytic stability in five consecutive catalytic cycles) make such systems promising for other cross-coupling reactions.

Here, we report the development of monodisperse Zn-doped iron oxide nanoparticles (NPs) with different amounts of Zn (ZnxFe3-xO4, 0 < x < 0.43) by thermal decomposition of a mixture of zinc and iron oleates. The as-synthesized NPs show a considerable fraction of wüstite (FeO) which is transformed to spinel upon 2 h oxidation of the NP reaction solutions. At any Zn doping amounts, we observed the enrichment of the NP surface with Zn2+ ions, which is enhanced at higher Zn loadings. Such a distribution of Zn2+ ions is attributed to the different thermal decomposition profiles of Zn and Fe oleates, with Fe oleate decomposing at much lower temperature than that of Zn oleate. The decomposition of Zn oleate is, in turn, catalyzed by a forming iron oxide phase. The magnetic properties were found to be strongly dependent on the Zn doping amounts, showing the saturation magnetization to decrease by 9 and 20% for x = 0.05 and 0.1, respectively. On the other hand, X-ray photoelectron spectroscopy near the Fermi level demonstrates that the Zn0.05Fe2.95O4 sample displays a more metallic character (a higher charge carrier density) than undoped iron oxide NPs, supporting its use as a spintronic material.

Here, we report the development of monodisperse Zn-doped iron oxide nanoparticles (NPs) with different amounts of Zn (ZnxFe3–xO4, 0 < x < 0.43) by thermal decomposition of a mixture of zinc and iron oleates. The as-synthesized NPs show a considerable fraction of wüstite (FeO) which is transformed to spinel upon 2 h oxidation of the NP reaction solutions. At any Zn doping amounts, we observed the enrichment of the NP surface with Zn2+ ions, which is enhanced at higher Zn loadings. Such a distribution of Zn2+ ions is attributed to the different thermal decomposition profiles of Zn and Fe oleates, with Fe oleate decomposing at much lower temperature than that of Zn oleate. The decomposition of Zn oleate is, in turn, catalyzed by a forming iron oxide phase. The magnetic properties were found to be strongly dependent on the Zn doping amounts, showing the saturation magnetization to decrease by 9 and 20% for x = 0.05 and 0.1, respectively. On the other hand, X-ray photoelectron spectroscopy near the Fermi level demonstrates that the Zn0.05Fe2.95O4 sample displays a more metallic character (a higher charge carrier density) than undoped iron oxide NPs, supporting its use as a spintronic material.

This paper reports the development of robust Pd- and Ru-containing magnetically recoverable catalysts in a one-pot procedure using commercially available, branched polyethyleneimine (PEI) as capping and reducing agent. For both catalytic metals, ∼3 nm nanoparticles (NPs) are stabilized in the PEI shell of magnetite NPs, whose aggregation allows for prompt magnetic separation. The catalyst properties were studied in a model reaction of 4-nitrophenol hydrogenation to 4-aminophenol with NaBH4. A similar catalytic NP size allowed us to decouple the NP size impact on the catalytic performance from other parameters and to follow the influence of the catalytic metal type and amount as well as the PEI amount on the catalytic activity. The best catalytic performances, the 1.2 min–1 rate constant and the 433.2 min–1 turnover frequency, are obtained for the Ru-containing catalyst. This is discussed in terms of stability of Ru hydride facilitating the surface-hydrogen transfer and the presence of Ru4+ species on the Ru NP surface facilitating the nitro group adsorption, both leading to an increased catalyst efficiency. High catalytic activity as well as the high stability of the catalyst performance in five consecutive catalytic cycles after magnetic separation makes this catalyst promising for nitroarene hydrogenation reactions.

The methanol-to-hydrocarbon (MTH) reaction has received considerable attention as utilizing renewable sources of both value-added chemicals and fuels becomes a number one priority for society. Here, for the first time we report the development of hierarchical zeolites (ZSM-5) containing both iron oxide and nickel oxide nanoparticles. By modifying the iron oxide (magnetite, Fe3O4) amounts, we are able to control the catalyst activity and the product distribution in the MTH process. At the medium Fe3O4 loading, the major fraction is composed of C9–C11 hydrocarbons (gasoline fraction). At the higher Fe3O4 loading, C1–C4 hydrocarbons prevail in the reaction mixture, while at the lowest magnetite loading the major component is the C5–C8 hydrocarbons. Addition of Ni species to Fe3O4–ZSM-5 leads to the formation of mixed Ni oxides (NiO/Ni2O3) positioned either on top of or next to Fe3O4 nanoparticles. This modification allowed us to significantly improve the catalyst stability due to diminishing coke formation and disordering of the coke formed. The incorporation of Ni oxide species also leads to a higher catalyst activity (up to 9.3 g(methanol)/(g(ZSM-5) × h)) and an improved selectivity (11.3% of the C5–C8 hydrocarbons and 23.6% of the C9–C11 hydrocarbons), making these zeolites highly promising for industrial applications.

A new concept for the magnetic immobilization of catalytically active material has been developed for continuous-flow Suzuki cross-coupling reactions. The reversible immobilization of the magnetic catalyst material inside a novel capillary microreactor has been achieved by utilizing a newly designed reactor housing with 208 small permanent magnets. As a catalyst material, magnetic Fe3O4 nanoparticles decorated with polyphenylenepyridyl dendrons and loaded with Pd nanoparticles have been employed. Both batch and continuous-flow experiments prove the activity of the catalyst and the applicability of this new microreactor concept.

Here, for the first time, we demonstrate formation of virus-like nanoparticles (VNPs) utilizing gold-coated iron oxide nanoparticles as cores and capsid protein of brome mosaic virus (BMV) or hepatitis B virus (HBV) as shells. Further, utilizing cryo-electron microscopy and single particle methods, we are able to show that the BMV coat on VNPs assembles into a structure very close to that of a native virion. This is a consequence of an optimal iron oxide NP size (∼11 nm) fitting the virus cavity and an ultrathin gold layer on the maghemite cores, which allows for utilization of SH-(CH2)11-(CH2-CH2-O)4-OCH2-COOH as capping molecules to provide sufficient stability, charge density, and small form factor. MRI studies show unique relaxivity ratios that diminish only slightly with gold coating. A virus protein coating of a magnetic core mimicking the wild-type virus makes these VNPs a versatile platform for biomedical applications.

We report a novel method for development of magnetically recoverable catalysts prepared by thermal decomposition of palladium acetylacetonate in the presence of iron oxide nanoparticles (NPs). Depending on conditions, the reaction results either in a dispersed mixture of Pd and iron oxide NPs or in their aggregates. It was demonstrated that the Pd loading, reaction temperature, solvent, and iron oxide NP size and composition are crucial to control the reaction product including the degree of aggregation of Pd and iron oxide NPs, and the catalyst properties. The aggregation controlled by polarization and magnetic forces allows faster magnetic separation, yet the aggregate sizes do not exceed a few hundred nanometers, making them suitable for various catalytic applications. These NP mixtures were studied in a selective hydrogenation of 2-methyl-3-butyn-2-ol to 2-methyl-3-buten-2-ol, demonstrating clear differences in catalytic behavior depending on the catalyst structure. In addition, one of the catalysts was also tested in hydrogenation of 3-methyl-1-pentyn-3-ol and 3-methyl-1-nonyn-3-ol, indicating some specificity of the catalyst toward different alkyne alcohols.

A combination of physicochemical methods allowed us to assess a structure of comparatively monodisperse 3–4 nm Pt–FexOy nanoparticles (NPs) synthesized by thermal decomposition of platinum acetylacetonate in the presence of iron oxide NPs as an iron source. Unlike traditional PtFe alloys composed of zerovalent Pt and Fe species with the surface enriched by Pt atoms, the NPs discussed in this work contain Pt(0) and oxidized Fe species (most probably Fe3+ or Fe2+) as is proven by X-ray photoelectron spectroscopy (XPS). Angular dependence XPS measurements demonstrated the absence of the core–shell structure, although a minor enrichment of the NP surface with Fe species was observed. High-resolution transmission electron microscopy and X-ray powder diffraction (XRD) reveal that these Pt–FexOy NPs are not alloys, but consist of different domains; i.e., they have a “cluster-in-cluster” morphology. A comparison of the XPS and XRD data allowed us to conclude that the NPs also include amorphous iron oxide. These r...

Here we report control of iron oxide and palladium nanoparticle (NP) formation via stabilization with polyphenylenepyridyl dendrons of the second and third generations with dodecyl periphery. These nanomaterials are developed as magnetically recoverable catalysts. To accurately assess the influence of the dodecyl exterior for the same dendron generation, we also designed a second generation dendron with partial dodecyl periphery. For all dendrons studied, the multicore iron oxide mesocrystals were formed, the sizes and morphology of which were controlled by the dendron generation. Analysis of the static and dynamic magnetic properties, in combination with transmission electron microscopy observations, demonstrate that magnetism is sensitive on the structure-directing capabilities of the type of the dendron which was employed for the mesocrystal stabilization. Close proximity of single cores in such multicore mesocrystals promotes the coupling of the neighboring magnetic moments, thus boosting their magnet...

Venezuelan equine encephalitis virus (VEEV) is a reemerging virus that causes a severe and often fatal disease in equids and humans. In spite of a continuous public health threat, to date, no vaccines or antiviral drugs have been developed for human use. Experimental vaccines demonstrate either poor efficiency or severe adverse effects. In this study, we developed a new strategy of alphavirus modification aimed at making these viruses capable of replication and efficient induction of the immune response without causing a progressive infection, which might lead to disease development. To achieve this, we developed a pseudoinfectious virus (PIV) version of VEEV. VEE PIV mimics natural viral infection in that it efficiently replicates its genome, expresses all of the viral structural proteins, and releases viral particles at levels similar to those found in wild-type VEEV-infected cells. However, the mutations introduced into the capsid protein make this protein almost incapable of packaging the PIV genome, and most of the released virions lack genetic material and do not produce a spreading infection. Thus, VEE PIV mimics viral infection in terms of antigen production but is safer due to its inability to incorporate the viral genome into released virions. These genome-free virions are referred to as virus-like particles (VLPs). Importantly, the capsid-specific mutations introduced make the PIV a very strong inducer of the innate immune response and add self-adjuvant characteristics to the designed virus. This unique strategy of virus modification can be applied for vaccine development against other alphaviruses.

A new family of Ni-, Co-, and Cr-doped Zn-containing magnetic oxide nanoparticles (NPs) stabilized by polyphenylquinoxaline (PPQ) and hyperbranched pyridylphenylene polymer (PPP) has been developed. These NPs have been synthesized by thermal decomposition of Zn and doping metal acetylacetonates in the reaction solution of preformed magnetite NPs, resulting in single-crystal NPs with spinel structure. For the PPQ-capped NPs, it was demonstrated that all three types of metal species (Fe, Zn, and a doping metal) reside within the same NPs, the surface of which is enriched with Zn and a doping metal, while the deeper layers are enriched with Fe. The Cr-doped NPs at the high Cr loading are an exception due to favored deposition of Cr on magnetite located in the NP depth. The PPP-capped NPs exhibit similar morphology and crystallinity; however, the detailed study of the NP composition was barred due to the high PPP amount retained on the NP surface. The catalyst testing in syngas conversion to methanol demonstrated outstanding catalytic properties of doped Zn-containing magnetic oxides, whose activities are dependent on the doping metal content and on the stabilizing polymer. The PPP stabilization allows for better access to the catalytic species due to the open and rigid polymer architecture and most likely optimized distribution of doping species. Repeat experiments carried out after magnetic separation of catalysts from the reaction mixture showed excellent catalyst stability even after five consecutive catalytic runs.

Biomass processing to value-added chemicals and biofuels received considerable attention due to the renewable nature of the precursors. Here, we report the development of Ru-containing magnetically recoverable catalysts for cellulose hydrogenolysis to low alcohols, ethylene glycol (EG) and propylene glycol (PG). The catalysts are synthesized by incorporation of magnetite nanoparticles (NPs) in mesoporous silica pores followed by formation of 2 nm Ru NPs. The latter are obtained by thermal decomposition of ruthenium acetylacetonate in the pores. The catalysts showed excellent activities and selectivities at 100% cellulose conversion, exceeding those for the commercial Ru/C. High selectivities as well as activities are attributed to the influence of Fe3O4 on the Ru(0)/Ru(4+) NPs. A facile synthetic protocol, easy magnetic separation, and stability of the catalyst performance after magnetic recovery make these catalysts promising for industrial applications.

Here we report the functionalization of monodisperse iron oxide nanoparticles (NPs) with commercially available functional acids containing multiple double bonds such as linolenic (LLA) and linoleic (LEA) acids or pyridine moieties such as 6-methylpyridine-2-carboxylic acid, isonicotinic acid, 3-hydroxypicolinic acid, and 6-(1-piperidinyl)pyridine-3-carboxlic acid (PPCA). Both double bonds and pyridine groups can be reacted with noble metal compounds to form catalytically active species in the exterior of magnetic NPs, thus making them promising magnetically recoverable catalysts. We determined that both LLA and LEA stabilize magnetic iron oxide NPs, allowing the formation of π-complexes with bis(acetonitrile)dichloropalladium(II) in the NP shells. In both cases, this leads to the formation of NP aggregates because of interparticle complexation. In the case of pyridine-containing ligands, only PPCA with two N-containing rings is able to provide NP stabilization and functionalization whereas other pyridine-containing acids did now allow sufficient steric stabilization. The interaction of PPCA-based particles with Pd acetate also leads to aggregation because of interparticle interactions, but the aggregates that are formed are much smaller. Nevertheless, the catalytic properties in the selective hydrogenation of dimethylethynylcarbinol (DMEC) to dimethylvinylcarbinol were the best for the catalyst based on LLA, demonstrating that the NP aggregates in all cases are penetrable for DMEC. Easy magnetic separation of this catalyst from the reaction solution makes it promising as a magnetically recoverable catalyst.

Ultrasonic spray pyrolysis has been used as a facile aerosol route to macroporous SiO(2) particles using simple inorganic salts as a pore template and colloidal SiO(2) as building blocks to the larger porous particles. As we found, the use of template salts with low melting points was vital to macroporous particle synthesis, as a dynamic droplet phase can be maintained throughout product formation. Otherwise, relatively compact particles are produced. Significantly, this approach avoids the need for post-isolation elimination of the template, instead permitting aqueous removal during product collection. Produced particles were characterized by SEM, TEM, and surface area and pore size measurements, while the influence of the selected salts on the reactivity between the building block SiO(2) colloids is discussed.

The filaments of spirochete periplasmic flagella (PFs) have a unique structure and protein composition. In most spirochetes, the PFs consist of a core of at least three related proteins (FlaB1, FlaB2, and FlaB3) and a sheath of FlaA protein. The functions of these filament proteins remain unknown. In this study, we used a multidisciplinary approach to examine the role of these proteins in determining the composition, shape, and stiffness of the PFs and how these proteins impact motility by using the spirochete Brachyspira (formerly Treponema , Serpulina ) hyodysenteriae as a genetic model. A series of double mutants lacking combinations of these PF proteins was constructed and analyzed. The results show the following. First, the diameters of PFs are primarily determined by the sheath protein FlaA, and that FlaA can form a sheath in the absence of an intact PF core. Although the sheath is important to the PF structure and motility, it is not essential. Second, the three core proteins play unequal roles in determining PF structure and swimming speed. The functions of the core proteins FlaB1 and FlaB2 overlap such that either one of these proteins is essential for the spirochete to maintain the intact PF structure and for cell motility. Finally, linear elasticity theory indicates that flagellar stiffness directly affects the spirochete's swimming speed.

A novel method of determining nanocluster sizes and size distributions using high-angle annular dark-field imaging in scanning transmission electron microscopy is described. This method is demonstrated for MgO-supported [Os10C(CO)24]2- clusters formed by treating Os3(CO)12 precursors in CO. The image analysis identified the presence of both Os3(CO)12 precursors and [Os10C(CO)24]2- clusters in the expected ratio (with the sizes matching those calculated on the basis of their crystallographically determined structures within 6%) and also larger clusters that can be readily identified as combinations of the former clusters.

Here we developed a new family of Zn-containing magnetic oxides of different structures by thermal decomposition of Zn(acac)2 in the reaction solution of preformed magnetite nanoparticles (NPs) stabilized by polyphenylquinoxaline. Upon an increase of the Zn(acac)2 loading from 0.15 to 0.40 mmol (vs 1 mmol of Fe(acac)3), the Zn content increases, and the Zn-containing magnetic oxide NPs preserve a spinel structure of magnetite and an initial, predominantly multicore NP morphology. X-ray photoelectron spectroscopy (XPS) of these samples revealed that the surface of iron oxide NPs is enriched with Zn, although Zn species were also found deep under the iron oxide NP surface. For all the samples, XPS also demonstrates the atom ratio of Fe(3+)/Fe(2+) = 2:1, perfectly matching Fe3O4, but not ZnFe2O4, where Fe(2+) ions are replaced with Zn(2+). The combination of XPS with other physicochemical methods allowed us to propose that ZnO forms an ultrathin amorphous layer on the surface of iron oxide NPs and also diffuses inside the magnetite crystals. At higher Zn(acac)2 loading, cubic ZnO nanocrystals coexist with magnetite NPs, indicating a homogeneous nucleation of the former. The catalytic testing in syngas conversion to methanol demonstrated outstanding catalytic properties of Zn-containing magnetic oxides, whose activities are dependent on the Zn loading. Repeat experiments carried out with the best catalyst after magnetic separation showed remarkable catalyst stability even after five consecutive catalytic runs.

Gold nanorods are widely known for their photothermal properties to treat solid tumors. Our work demonstrates the unrealized capacity to image these reagents in liquid at high resolution using Transmission Electron Microscopy (TEM). Here we perform the first atomic measurements of functionalized nanorods in solution while visualizing their dynamic behaviour with TEM.

The co-translational translocation of proteins into the endoplasmic reticu- lum (ER) lumen and the biogenesis of membrane proteins require ribo- some binding to a membrane channel formed by the Sec61p complex. We now report the 17 Astructure of a mammalian ribosome - channel complex derived from ER membranes. Atomic models of the ribosomal subunits were aligned to the programmed ribosome from Thermus thermophilus, to provide a common reference frame. The T. thermophilus ribosome, and by extension all known high resolution subunit models, were then docked within our map of the ribosome - channel complex. The structure shows that the ribosome contains a putative tRNA in the exit site, and a comparison with a non-programmed, yeast ribosome suggests that the L1 stalk may function as a gate in the tRNA exit path. We have localized six major expansion segments in the large subunit of the vertebrate ribosome including ES27, and suggest a function for ES30. The large ribosomal subunit is linked to the channel by four connec- tions. We identified regions in the large subunit rRNA and four proteins that may help form the connections. These regions of the ribosome probably serve as a template to guide the assembly of the asymmetric translocation channel. Three of the connections form a picket fence that separates the putative translocation pore from the attachment site of an additional membrane component. The ribosome -channel connections also create an open junction that would allow egress of a nascent chain into the cytosol. At a threshold that is appropriate for the entire complex, the channel is rather solid and the lumenal half of the putative transloca- tion pore is closed. These data suggest that the flow of small molecules across the membrane may be impeded by the channel itself, rather than the ribosome - channel junction. q 2002 Elsevier Science Ltd. All rights reserved

The apoptosome is an Apaf-1 cytochrome c complex that activates procaspase-9. The three-dimensional structure of the apoptosome has been determined at 27 A resolution, to reveal a wheel-like particle with 7-fold symmetry. Molecular modeling was used to identify the caspase recruitment and WD40 domains within the apoptosome and to infer likely positions of the CED4 homology motif and cytochrome c. This analysis suggests a plausible role for cytochrome c in apoptosome assembly. In a subsequent structure, a noncleavable mutant of procaspase-9 was localized to the central region of the apoptosome. This complex promotes the efficient activation of procaspase-3. Therefore, the cleavage of procaspase-9 is not required to form an active cell death complex.

We report the formation of multicore iron oxide mesocrystals using the thermal decomposition of iron acetyl acetonate in the presence of the multifunctional and rigid poly(phenylenepyridyl) dendron and dendrimer. We thoroughly analyze the influence of capping molecules of two different architectures and demonstrate for the first time that dendron/dendrimer self-assembly leads to multicore morphologies. Single-crystalline ordering in multicore NPs leads to cooperative magnetic behavior: mesocrystals exhibit ambient blocking temperatures, allowing subtle control over magnetic properties using a minor temperature change.

Flagella purified from Salmonella enterica serovar Typhimurium contain FliG, FliM, and FliN, cytoplasmic proteins that are important in torque generation and switching, and FliF, a transmembrane structural protein. The motor portion of the flagellum (the basal body complex) has a cytoplasmic C ring and a transmembrane M ring. Incubation of purified basal bodies at pH 4.5 removed FliM and FliN but not FliG or FliF. These basal bodies lacked C rings but had intact M rings, suggesting that FliM and FliN are part of the C ring but not a detectable part of the M ring. Incubation of basal bodies at pH 2.5 removed FliG, FliM, and FliN but not FliF. These basal bodies lacked the C ring, and the cytoplasmic face of the M ring was altered, suggesting that FliG makes up at least part of the cytoplasmic face of the M ring. Further insights into FliG were obtained from cells expressing a fusion protein of FliF and FliG. Flagella from these mutants still rotated but cells were not chemotactic. One mutant is a full-length fusion of FliF and FliG; the second mutant has a deletion lacking the last 56 residues of FliF and the first 94 residues of FliG. In the former, C rings appeared complete, but a portion of the M ring was shifted to higher radius. The C-ring–M-ring interaction appeared to be altered. In basal bodies with the fusion-deletion protein, the C ring was smaller in diameter, and one of its domains occupied space vacated by missing portions of FliF and FliG.

Cotranslational translocation of proteins requires ribosome binding to the Sec61p channel at the endoplasmic reticulum (ER) membrane. We have used electron cryomicroscopy to determine the structures of ribosome-channel complexes in the absence or presence of translocating polypeptide chains. Surprisingly, the structures are similar and contain 3–4 connections between the ribosome and channel that leave a lateral opening into the cytosol. Therefore, the ribosome-channel junction may allow the direct transfer of polypeptides into the channel and provide a path for the egress of some nascent chains into the cytosol. Moreover, complexes solubilized from mammalian ER membranes contain an additional membrane protein that has a large, lumenal protrusion and is intercalated into the wall of the Sec61p channel. Thus, the native channel contains a component that is not essential for translocation.

Protein synthesis in eukaryotes is mediated by both cytoplasmic and membrane-bound ribosomes. During the co-translational translocation of secretory and membrane proteins, eukaryotic ribosomes dock with the protein conducting channel of the endoplasmic reticulum. An under- standing of these processes will require the detailed structure of a eukaryotic ribosome. To this end, we have compared the three-dimen- sional structures of yeast and rabbit ribosomes at 24 Aresolution. In gen- eral, we find that the active sites for protein synthesis and translocation have been highly conserved. It is interesting that a channel was visual- ized in the neck of the small subunit whose entrance is formed by a deep groove. By analogy with the prokaryotic small subunit, this channel may provide a conserved portal through which mRNA is threaded into the decoding center. In addition, both the small and large subunits are built around a dense tubular network. Our analysis further suggests that the nascent chain exit tunnel and the docking surface for the endoplasmic reticulum channel are formed by this network. We surmise that many of these features correspond to rRNA, based on biochemical and structural data. Ribosomal function is critically dependent on the specific association of small and large subunits. Our analysis of eukaryotic ribosomes reveals four conserved inter-subunit bridges with a geometry similar to that found in prokaryotes. In particular, a double-bridge connects the small subunit platform with the interface canyon on the large subunit. More- over, a novel bridge is formed between the platform and the base of the L1 domain. Finally, size differences between mammalian and yeast large subunit rRNAs have been correlated with five expansion segments that form two large spines and three extended fingers. Overall, we find that expansion segments within the large subunit rRNA have been incor- porated at positions distinct from the active sites for protein synthesis and translocation. # 2000 Academic Press

The potential redox activity of the 2,2'-pyridylpyrrolide ligand carrying two CF3 substituents (L(2)) is investigated. Synthesis and characterization of d(6) and d(7) species M(L(2))2 for M = Fe and Co are described (both are nonplanar, but not tetrahedral), as are the Lewis acidity of each. In spite of CV evidence for quasireversible reductions to form M(L(2))2(q-) where q = 1 and 2, chemical reductants instead yield divalent metal complexes KM(L(2))3, which show attractive interactions of K(+) to pyrrolide, to F, and to lattice toluene π cloud. The collected evidence on these products indicates that pyridylpyrrolide is a weak field ligand here, but CO can force spin pairing in Fe(L(2))2(CO)2. Evidence is presented that the overall reductive reaction yields 33 mol % of bulk metal, which is the fate of the reducing equivalents, and a mechanism for this ligand redistribution is proposed. Analogous ligand redistribution behavior is also seen for nickel and for trimeric monovalent copper analogues; reduction of Cu(L(2))2 simply forms Cu(L(2))2(-).

We report a novel method for synthesis of alloy PtFe nanoparticles (NPs) of different compositions using γ-Fe2O3 NPs as an iron source. We show here other growth mechanisms than conventional nucleation on a NP surface leading to core-shell NP or seeded NP growth. Depending on reaction conditions, different compositions of PtFe NPs can be obtained. PtFe NPs may coexist with γ-Fe2O3 NPs in the reaction product. This mixture obtained in situ allows much higher catalytic activity in hydrogenation of methyl-3-buten-2-ol than that of only PtFe nanoparticles or merely mixed PtFe and γ-Fe2O3 NPs. The presence of both PtFe and γ-Fe2O3 NPs allows formation of dense and stable NP arrays which hold promise for catalytic applications in microreactors or other reactor designs where a catalytic film is favoured.

Mitochondria undergo dynamic structural alterations to meet changing needs and to maintain homeostasis. We report here a novel mitochondrial structure. Conventional transmission electron microscopic examination of murine embryonic fibroblasts treated with carbonyl cyanide m-chlorophenylhydrazone (CCCP), a mitochondrial uncoupler, found that more than half of the mitochondria presented a ring-shaped or C-shaped morphology. Many of these mitochondria seemed to have engulfed various cytosolic components. Serial sections through individual mitochondria indicated that they formed a ball-like structure with an internal lumen surrounded by the membranes and containing cytosolic materials. Notably, the lumen was connected to the external cytoplasm through a small opening. Electron tomographic reconstruction of the mitochondrial spheroids demonstrated the membrane topology and confirmed the vesicular configuration of this mitochondrial structure. The outside periphery and the lumen were defined by the outer membranes, which were lined with the inner membranes. Matrix and cristae were retained but distributed unevenly with less being kept near the luminal opening. Mitochondrial spheroids seem to form in response to oxidative mitochondrial damage independently of mitophagy. The structural features of the mitochondrial spheroids thus represent a novel mitochondrial dynamics.

The objective of this study was to determine the location of protein P7, the RNA packaging factor, in the procapsid of the φ6 cystovirus. A comparison of cryo-electron microscopy high-resolution single particle reconstructions of the φ6 complete unexpanded procapsid, the protein P2-minus procapsid (P2 is the RNA directed RNA-polymerase), and the P7-minus procapsid, show that prior to RNA packaging the P7 protein is located near the three-fold axis of symmetry. Difference maps highlight the precise position of P7 and demonstrate that in P7-minus particles the P2 proteins are less localized with reduced densities at the three-fold axes. We propose that P7 performs the mechanical function of stabilizing P2 on the inner protein P1 shell which ensures that entering viral single-stranded RNA is replicated.