66 results on '"Datta AR"'
Search Results
2. Recurrent Focal Segmental Glomerulosclerosis after Renal Transplantation
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Minz M, Kusum Joshi, Datta Ar, Kirpal S. Chugh, and Sakhuja
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medicine.medical_specialty ,030232 urology & nephrology ,Biomedical Engineering ,Urology ,Medicine (miscellaneous) ,Bioengineering ,030204 cardiovascular system & hematology ,Biomaterials ,03 medical and health sciences ,0302 clinical medicine ,Focal segmental glomerulosclerosis ,Biopsy ,Medicine ,Allograft biopsy ,Proteinuria ,medicine.diagnostic_test ,business.industry ,General Medicine ,Maintenance hemodialysis ,medicine.disease ,Transplantation ,surgical procedures, operative ,Young adult male ,Chronic renal failure ,medicine.symptom ,business - Abstract
In a young adult male with chronic renal failure from focal segmental glomerulosclerosis, massive proteinuria appeared within two weeks after transplantation. Although allograft biopsy at eight weeks was normal, a second biopsy eight months after transplant showed focal segmental glomerulosclerosis again. Sixteen months after transplantation maintenance hemodialysis had to be restarted.
- Published
- 1991
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3. Survival of Listeria monocytogenes on Frozen Vegetables during Long-term Storage at -18 and -10°C.
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Fay ML, Salazar JK, Stewart DS, Khouja BA, Zhou X, and Datta AR
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- Vegetables, Colony Count, Microbial, Food Microbiology, Temperature, Listeria monocytogenes
- Abstract
Two recent listeriosis outbreaks have occurred in the United States and Europe due to contaminated individually quick-frozen (IQF) vegetables. While one of the outbreaks was due to frozen vegetables considered ready-to-eat (RTE), the other was linked to frozen corn whose packaging contained cooking instructions and was considered not-ready-to-eat (NRTE). However, consumers may thaw certain frozen vegetables and consume without cooking. Since no data is available on the survivability of L. monocytogenes on IQF vegetables during frozen storage, this study examined the population of six different strains (comprising lineages 1/2a, 1/2b, and 4b) on IQF vegetables during long-term storage. Individual strains were inoculated onto an IQF vegetable mix at 4 log CFU/g and stored at -18 or -10°C for 360 days. Although fluctuations in populations of all strains were observed on the vegetables during storage, no significant differences based on strain, lineages, or temperature were observed. Overall, L. monocytogenes populations were only reduced by up to 0.47 and 0.59 log CFU/g after 360 days at -18 and -10°C, respectively. Results from this study suggest that L. monocytogenes is able to persist on IQF vegetables for extended time periods with no significant reduction in population. Future studies could evaluate the survival and growth of L. monocytogenes on IQF vegetables during thawing and storage., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Megan L. Fay, Bashayer A. Khouja reports financial support was provided by Oak Ridge Institute for Science and Education., (Published by Elsevier Inc.)
- Published
- 2024
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4. Prevalence of Listeria monocytogenes, Salmonella spp., Shiga toxin-producing Escherichia coli, and Campylobacter spp. in raw milk in the United States between 2000 and 2019: A systematic review and meta-analysis.
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Williams EN, Van Doren JM, Leonard CL, and Datta AR
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- United States, Humans, Animals, Milk microbiology, Prevalence, Salmonella, Food Microbiology, Shiga-Toxigenic Escherichia coli, Listeria monocytogenes, Campylobacter
- Abstract
Raw (unpasteurized) milk is available for sale and direct human consumption within some states in the United States (US); it cannot be sold or distributed in interstate commerce. Raw milk may contain pathogenic microorganisms that, when consumed, may cause illness and sometimes may result in death. No comprehensive review for prevalence and levels of the major bacterial pathogens in raw milk in the US exists. The objective of the present research was to systematically review the scientific literature published from 2000 to 2019 to estimate the prevalence and levels of Listeria monocytogenes, Salmonella spp., Shiga toxin-producing Escherichia coli (STEC), and Campylobacter spp. in raw milk in the US. Peer-reviewed studies were retrieved systematically from PubMed®, Embase®, and Web of Science
TM . The unique complete nonduplicate references were uploaded into the Health Assessment Work Collaborative (HAWC). Based on the selection criteria, twenty studies were included in the systematic review and meta-analysis. Comprehensive Meta-Analysis (CMA) was used for statistical analyses, specifically, random effects meta-analyses were used to synthesize raw bulk tank milk (BTM) and milk filters (MF) data. Data from studies using culture and non-culture-based detection methods were included. Forest plots generated in CMA (Biostat, Englewood, NJ) were used to visualize the results. The average prevalence (event rate) of L. monocytogenes, Salmonella spp., STEC, and Campylobacter spp. in raw BTM in the US was estimated at 4.3% (95% confidence intervals [CIs], 2.8-6.5%), 3.6% (95% CIs, 2.0-6.2%), 4.3% (95% CIs, 2.4-7.4%), and 6.0% (95% CIs, 3.2-10.9%), respectively. Estimated prevalence was generally larger in MF than in BTM. There was not enough data to perform a meta-analysis for the prevalence or levels of pathogens in raw milk from retail establishments or other milk categories., (Published by Elsevier Inc.)- Published
- 2023
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5. Foodborne illness outbreaks linked to unpasteurised milk and relationship to changes in state laws - United States, 1998-2018.
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Koski L, Kisselburgh H, Landsman L, Hulkower R, Howard-Williams M, Salah Z, Kim S, Bruce BB, Bazaco MC, Batz MB, Parker CC, Leonard CL, Datta AR, Williams EN, Stapleton GS, Penn M, Whitham HK, and Nichols M
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- Animals, Humans, Disease Outbreaks, Public Health, United States epidemiology, Pasteurization, Foodborne Diseases epidemiology, Milk legislation & jurisprudence, Milk standards
- Abstract
Consumption of unpasteurised milk in the United States has presented a public health challenge for decades because of the increased risk of pathogen transmission causing illness outbreaks. We analysed Foodborne Disease Outbreak Surveillance System data to characterise unpasteurised milk outbreaks. Using Poisson and negative binomial regression, we compared the number of outbreaks and outbreak-associated illnesses between jurisdictions grouped by legal status of unpasteurised milk sale based on a May 2019 survey of state laws. During 2013-2018, 75 outbreaks with 675 illnesses occurred that were linked to unpasteurised milk; of these, 325 illnesses (48%) were among people aged 0-19 years. Of 74 single-state outbreaks, 58 (78%) occurred in states where the sale of unpasteurised milk was expressly allowed. Compared with jurisdictions where retail sales were prohibited ( n = 24), those where sales were expressly allowed ( n = 27) were estimated to have 3.2 (95% CI 1.4-7.6) times greater number of outbreaks; of these, jurisdictions where sale was allowed in retail stores ( n = 14) had 3.6 (95% CI 1.3-9.6) times greater number of outbreaks compared with those where sale was allowed on-farm only ( n = 13). This study supports findings of previously published reports indicating that state laws resulting in increased availability of unpasteurised milk are associated with more outbreak-associated illnesses and outbreaks.
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- 2022
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6. Involvement of a putative ATP-Binding Cassette (ABC) Involved in manganese transport in virulence of Listeria monocytogenes.
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Liu Y, Yoo BB, Hwang CA, Martinez MR, Datta AR, and Fratamico PM
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- ATP-Binding Cassette Transporters genetics, ATP-Binding Cassette Transporters metabolism, Adenosine Triphosphate metabolism, Bacterial Proteins genetics, Bacterial Proteins metabolism, Humans, Manganese metabolism, Virulence genetics, Listeria monocytogenes, Listeriosis
- Abstract
Listeria monocytogenes is a foodborne pathogen and the causative agent of listeriosis, a disease associated with high fatality (20-30%) and hospitalization rates (>95%). ATP-Binding Cassette (ABC) transporters have been demonstrated to be involved in the general stress response. In previous studies, in-frame deletion mutants of the ABC transporter genes, LMOf2365_1875 and LMOf2365_1877, were constructed and analyzed; however, additional work is needed to investigate the virulence potential of these deletion mutants. In this study, two in vitro methods and one in vivo model were used to investigate the virulence potential of in-frame deletion mutants of ABC transporter genes. First, the invasion efficiency in host cells was measured using the HT-29 human cell line. Second, cell-to-cell spread activity was measured using a plaque forming assay. Lastly, virulence potential of the mutants was tested in the Galleria mellonella wax moth model. Our results demonstrated that the deletion mutant, ⊿LMOf2365_1875, displayed decreased invasion and cell-to-cell spread efficiency in comparison to the wild-type, LMOf2365, indicating that LMOf2365_1875 may be required for virulence. Furthermore, the reduced virulence of these mutants was confirmed using the Galleria mellonella wax moth model. In addition, the expression levels of 15 virulence and stress-related genes were analyzed by RT-PCR assays using stationary phase cells. Our results showed that virulence-related gene expression levels from the deletion mutants were elevated (15/15 genes from ⊿LMOf2365_1877 and 7/15 genes from ⊿LMOf2365_1875) compared to the wild type LMOf2365, suggesting that ABC transporters may negatively regulate virulence gene expression under specific conditions. The expression level of the stress-related gene, clpE, also was increased in both deletion mutants, indicating the involvement of ABC transporters in the stress response. Taken together, our findings suggest that ABC transporters may be used as potential targets to develop new therapeutic strategies to control L. monocytogenes., Competing Interests: The authors have declared that no competing interests exist.
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- 2022
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7. Physiology, Anticholinergic Reaction
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Migirov A and Datta AR
- Abstract
Acetylcholine (ACh) is a neurotransmitter that acts on the central nervous system (CNS), the autonomic nervous system (ANS), and at the neuromuscular junction (NMJ).[1] Generally, ACh receptors at the NMJ are nicotinic type while in the CNS and ANS they are usually muscarinic type. As a reminder, these receptors are functionally and structurally different; nicotinic ACh receptors are ligand-gated ion channels, whereas muscarinic ACh receptors are G-protein coupled receptors. Processes that enhance ACh function are termed “cholinergic” while processes that inhibit the action of ACh at its receptors are termed “anticholinergic.” Anticholinergic effects are most commonly the result of medication. These medications should be more appropriately termed "antimuscarinics," as they usually block muscarinic but not nicotinic receptors. At least 600 drugs/medicinal products are recognized to have anticholinergic activity, and the most common of these are responsible for a significant amount of poisoning admissions. Many also contribute to the development of an anticholinergic reaction: a constellation of symptoms resulting from the antagonism of muscarinic receptors throughout the body. The features of the anticholinergic reaction are deducible from an understanding of the normal function of muscarinic receptors at various organs, and the following mnemonic summarizes these effects: Mad as a hatter (delirium). Blind as a bat (ocular symptoms). Dry as a bone (anhidrosis/dry mouth/dry skin). Hot as a hare (fever). Bloated as a toad (constipation). The heart runs alone (tachycardia). Full as a flask (urinary retention). Red as a beet (cutaneous vasodilation). Clinically the most significant feature is delirium, particularly in the elderly, who are most likely to be affected by the anticholinergic reaction.[2][3], (Copyright © 2022, StatPearls Publishing LLC.)
- Published
- 2022
8. Development and Validation of a Quantitative PCR Method for Species Verification and Serogroup Determination of Listeria monocytogenes Isolates.
- Author
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Burall LS, Sepehri S, Srinivasan D, Grim CJ, Lacher DW, Ferguson M, Nambiar R, and Datta AR
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- Aged, Female, Humans, Infant, Newborn, Phylogeny, Pregnancy, Serogroup, Serotyping, Listeria, Listeria monocytogenes genetics, Listeriosis
- Abstract
Abstract: Listeria monocytogenes (Lm) is one of the leading causes of death because of foodborne illness, affecting the elderly, pregnant women, neonates, and people who are immunocompromised. Serologically, Lm can be classified into 13 serotypes, although only 4 are typically linked with food contamination and illness. Since 2000, a shift in serotypes involved in listeriosis outbreaks has been observed, suggesting that tracking of serotypes could help identify emerging trends. A PCR method developed in 2004 allowed detection of the four major serotypes as molecular serogroups, corresponding to broad phylogenetic groups. In this study, a novel quantitative PCR (qPCR) method was developed that uses two multiplex qPCRs, one to confirm the Listeria genus and Lm species and the second for Lm molecular serogrouping. This method was compared with the U.S. Food and Drug Administration Bacteriological Analytical Manual (BAM) method for Lm and the seroagglutination method, using a 208-strain panel. Comparison of the genus and species qPCR assay with the BAM methods found an equal or slightly higher accuracy for the qPCR method (>98%), compared with the BAM protocol (>96%), when evaluated against independent characterization data. Molecular serogrouping using the qPCR method (96.6%) was more accurate than the seroagglutination assay (75.6%). The qPCR method identified Lm 4bV strains, which could not be resolved using seroagglutination. The qPCR could not identify lineage III and IV serotype 4b strains but did correctly identify 16 of 18 lineage III and IV strains. The qPCR method performed genus identification for the Listeria species Lm, L. innocua, L. welshimeri, L. ivanovii, and L. seeligeri. In addition, the method performed species identification for Lm and classified Lm into six molecular serogroups: 2A, 2B, 2C, 4B, NT, and 4bV. This method provided a rapid and accurate confirmation of Lm and serogroup determinations; furthermore, it could help identify otherwise unlinked strains by enabling whole genome sequencing analysis based on broad phylogeny, independent of other information., (Published 2021 by the International Association for Food Protection. Not subject to U.S. Copyright.)
- Published
- 2021
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9. Virulence assessment of Listeria monocytogenes grown in different foods using a Galleria mellonella model.
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Rakic Martinez M, Ferguson M, and Datta AR
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- Animals, Bacterial Load, Cucumis melo microbiology, Culture Media, Foodborne Diseases etiology, Humans, Larva microbiology, Listeria growth & development, Listeria pathogenicity, Listeria monocytogenes growth & development, Listeriosis etiology, Malus microbiology, Models, Biological, Moths microbiology, Risk Assessment, Virulence, Food Microbiology, Listeria monocytogenes pathogenicity
- Abstract
Various produce including cantaloupe, caramel-coated apples, and packaged salads, have been recognized in recent years as vehicles for listeriosis, a human foodborne disease caused by intracellular pathogen Listeria monocytogenes. Our knowledge regarding the role of these foods in L. monocytogenes virulence, however, is limited. Understanding their role in modulating L. monocytogenes virulence can be useful in risk assessments and for developing control measures. In this study, we employed the Galleria mellonella larvae model to evaluate virulence potential of fifteen clinical, environmental and food isolates of L. monocytogenes, related to three major outbreaks, after growth on different foods. The non-human pathogen Listeria innocua was also included in the panel. Strains were inoculated in parallel in 5ml of brain heart infusion (BHI) broth, and on the surfaces of cantaloupe and apple fragments (5g each) at about 105 colony forming units (CFU)/ml/fragment. One set of inoculated broth and food fragments was incubated at 10°C for 5 days while the second set was kept at 25°C for 3 days. L. monocytogenes cells were recovered from the fruits and BHI, washed twice, re-suspended in saline, and used to inoculate G. mellonella larvae at final concentrations of 106 and 105 CFU/larva. The larvae were incubated at 37°C and monitored for mortality (LT50-time taken to kill 50% of the larvae) and phenotypic changes over seven days. L. monocytogenes grown on cantaloupe and apple flesh surfaces resulted in higher virulence than when grown in BHI. L. monocytogenes infection at 106 CFU/larvae resulted in an average LT50 of ≤ 30, 36 and 47 hours on cantaloupe, apples and BHI, respectively. These results represent a 2.5-4-fold increased mortality compared with an LT50 ≥120 hours in larvae infected with the same doses of L. innocua grown in corresponding matrices. Similar trends were also recorded with doses of about 105 CFU /larvae., Competing Interests: The authors have declared that no competing interests exist.
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- 2020
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10. The Forgotten Middle: Many Middle-Income Seniors Will Have Insufficient Resources For Housing And Health Care.
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Pearson CF, Quinn CC, Loganathan S, Datta AR, Mace BB, and Grabowski DC
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- Aged, Aged, 80 and over, Cross-Sectional Studies, Demography, Female, Health Services Needs and Demand, Health Status, Humans, Longitudinal Studies, Male, Health Services Accessibility economics, Housing economics, Social Class
- Abstract
As people age and require more assistance with daily living and health needs, a range of housing and care options is available. Over the past four decades the market for seniors housing and care-including assisted living and independent living communities-has greatly expanded to accommodate people with more complex needs. These settings provide housing in a community environment that often includes personal care assistance services. Unfortunately, these settings are often out of the financial reach of many of this country's eight million middle-income seniors (those ages seventy-five and older). The private seniors housing industry has generally focused on higher-income people instead. We project that by 2029 there will be 14.4 million middle-income seniors, 60 percent of whom will have mobility limitations and 20 percent of whom will have high health care and functional needs. While many of these seniors will likely need the level of care provided in seniors housing, we project that 54 percent of seniors will not have sufficient financial resources to pay for it. This gap suggests a role for public policy and the private sector in meeting future long-term care and housing needs for middle-income seniors.
- Published
- 2019
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11. Global transcriptomic response of Listeria monocytogenes during growth on cantaloupe slices.
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Kang J, Burall L, Mammel MK, and Datta AR
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- Adaptation, Physiological, Amino Acids metabolism, Carbohydrate Metabolism genetics, Culture Media, Down-Regulation, Gastric Acid, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Iron metabolism, Listeria monocytogenes pathogenicity, Microbial Viability, Nucleotides metabolism, Refrigeration, Stress, Physiological, Up-Regulation, Virulence genetics, Cucumis melo microbiology, Genes, Bacterial genetics, Listeria monocytogenes genetics, Listeria monocytogenes growth & development, Listeria monocytogenes metabolism, Transcriptome
- Abstract
Understanding a pathogen's response to food environments is imperative to develop effective control strategies as well as to elucidate the impact of foods on virulence potential. The purpose of this study was to assess transcriptional response of Listeria monocytogenes after growth in cantaloupe, as well as its impact on survival in synthetic gastric fluid (SGF). The transcriptional profiles of L. monocytogenes grown in cantaloupe or Brain Heart Infusion (BHI) under refrigeration were compared by a custom-designed microarray. A total of 286 and 175 genes were significantly up- and down-regulated, respectively, in L. monocytogenes grown in cantaloupe as compared to BHI (fold change ≥ 2.5 and adj. P < 0.05). The majority of upregulated genes belonged to functions related to amino acid and nucleotide metabolism, flagellar biosynthesis, and iron acquisition, while most downregulated genes belonged to carbohydrate metabolism. Notably, the branched chain amino acid (BCAA: leucine, isoleucine, valine) biosynthesis operon was shown to be highly upregulated as well as the purine and pyrimidine biosynthesis pathways. Transcript levels of several stress- and virulence-related genes were significantly altered, implying an impact of growth in cantaloupe on the virulence potential of L. monocytogenes. Enhanced survival of L. monocytogenes in SGF following growth in cantaloupe further demonstrated the impact of cantaloupe-associated growth on the pathogen's subsequent response to a host relevant stress., (Copyright © 2018. Published by Elsevier Ltd.)
- Published
- 2019
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12. Constructing a toolkit to evaluate quality of state and local administrative data.
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Seeskin ZH, Ugarte G, and Datta AR
- Abstract
In the United States, state and local agencies administering government assistance programs have in their administrative data a powerful resource for policy analysis to inform evaluation and guide improvement of their programs. Understanding different aspects of their administrative data quality is critical for agencies to conduct such analyses and to improve their data for future use. However, state and local agencies often lack the resources and training for staff to conduct rigorous evaluations of data quality. We describe our efforts in developing tools that can be used to assess data quality as well as the challenges encountered in constructing these tools. The toolkit focuses on critical dimensions of quality for analyzing an administrative dataset, including checks on data accuracy, the completeness of the records, and the comparability of the data over time and among subgroups of interest. State and local administrative databases often include a longitudinal component which our toolkit also aims to exploit to help evaluate data quality. In addition, we incorporate data visualization to draw attention to sets of records or variables that contain outliers or for which quality may be a concern. While we seek to develop general tools for common data quality analyses, most administrative datasets have particularities that can benefit from a customized analysis building on our toolkit., Competing Interests: Statement on conflicts of interest: The authors declare that they do not have any conflicts of interest.
- Published
- 2019
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13. Implications of new legislation (US FSMA) and guidelines (EC) on the establishment of management systems for agricultural water.
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Allende A, Datta AR, Smith WA, Adonis R, MacKay A, and Adell AD
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- Agricultural Irrigation methods, Animals, Bacteria classification, Bacteria genetics, Bacteria growth & development, Bacteria isolation & purification, Crops, Agricultural growth & development, Crops, Agricultural standards, Feces microbiology, Food Contamination, Food Safety, Humans, Agricultural Irrigation legislation & jurisprudence, Crops, Agricultural microbiology, Fresh Water microbiology
- Abstract
This report summarizes key messages related to agricultural water quality as discussed by an ad hoc panel at the 1st International Symposium of Food Safety in Santiago, Chile. Participating representatives of the academia, industry and government of diverse geographical backgrounds and the audience discussed topics such as (1) implications of the US Food Safety Modernization Act (FSMA: www.fda.gov/Food/GuidanceRegulation/FSMA/ucm277706.htm) on the Agricultural Water Quality, (2) comparisons between MPN and CFU in analyzing water quality, (3) alternatives to fecal indicator bacteria (FIB) to be used as indicators to evaluate water quality, and (4) vegetative buffers as an alternative to reduce pathogen loads in agricultural surface waters. Panelists identified the following key messages for each topic discussed that are related to agricultural water quality: (1) the FSMA regulation and the new guidance document elaborated by the EC are highly relevant as they provide a definition of agricultural water and specific criteria for different water uses and circumstances; (2) FSMA supports modification from MPN to CFU; (3) Growers require more alternatives for treatment of agricultural water; (4) Vegetative buffers are a potential practical and feasible alternative for agriculture producers to reduce the pathogen and fecal pollution loads of in their agricultural waters., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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14. Serotype to genotype: The changing landscape of listeriosis outbreak investigations.
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Datta AR and Burall LS
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- Disease Outbreaks, Genotype, Humans, Listeria monocytogenes classification, Listeria monocytogenes genetics, Listeriosis epidemiology, Phylogeny, Serogroup, Listeria monocytogenes isolation & purification, Listeriosis microbiology
- Abstract
The classical definition of a disease outbreak is the occurrence of cases of disease in excess of what would normally be expected in a community, geographical area or time period. The establishment of an outbreak then starts with the identification of an incidence of cases above the normally expected threshold during a given time period. Subsequently, the cases are examined using a variety of subtyping methods to identify potential linkages. As listeriosis disease has a long incubation period, relating a single source or multiple sources of contaminated food to clinical disease is challenging and time consuming. The vast majority of human listeriosis cases are caused by three serotypes, 1/2a, 1/2b, and 4b. Thus serotyping of isolates from suspected foods and clinical samples, although useful for eliminating some food sources, has a very limited discriminatory power. The advent of faster and more affordable sequencing technology, coupled with increased computational power, has permitted comparisons of whole Listeria genome sequences from isolates recovered from clinical, food, and environmental sources. These analyses made it possible to identify outbreaks and the source much more accurately and faster, thus leading to a reduction in number of illnesses as well as a reduction in economic losses. Initial DNA sequence information also facilitated the development of a simple molecular serotype protocol which allowed for the identification of major disease causing serotypes of L. monocytogenes, including a clade of 4b variant (4bV) strains of L. monocytogenes involved in at least 3 more recent listeriosis outbreaks in the US. Furthermore, data generated using whole genome sequence (WGS) analyses was successfully utilized to develop a pan-genomic DNA microarray as well as a single nucleotide polymorphism (SNP) based analysis. Herein, we present and compare, the two recently developed sub-typing technologies and discuss how these methods are not only important in outbreak investigations, but could also shed light on possible adaptations to different foods and environments., (Published by Elsevier Ltd.)
- Published
- 2018
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15. Genomic and phenotypic diversity of Listeria monocytogenes clonal complexes associated with human listeriosis.
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Bergholz TM, Shah MK, Burall LS, Rakic-Martinez M, and Datta AR
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- Genomics, Humans, Listeria monocytogenes metabolism, Listeria monocytogenes pathogenicity, Virulence genetics, Food Microbiology, Genetic Variation, Listeria monocytogenes genetics, Listeriosis microbiology
- Abstract
Listeria monocytogenes is a pathogen of significant concern in many ready to eat foods due to its ability to survive and multiply even under significant environmental stresses. Listeriosis in humans is a concern, especially to high-risk populations such as those who are immunocompromised or pregnant, due to the high rates of morbidity and mortality. Whole genome sequencing has become a routine part of assessing L. monocytogenes isolated from patients, and the frequency of different genetic subtypes associated with listeriosis is now being reported. The recent abundance of genome sequences for L. monocytogenes has provided a wealth of information regarding the variation in core and accessory genomic elements. Newly described accessory genomic regions have been linked to greater virulence capabilities as well as greater resistance to environmental stressors such as sanitizers commonly used in food processing facilities. This review will provide a summary of our current understanding of stress response and virulence phenotypes of L. monocytogenes, within the context of the genetic diversity of the pathogen.
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- 2018
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16. Fate and Transport Modelling of Emerging Pollutants from Watersheds to Oceans: A Review.
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Datta AR, Kang Q, Chen B, and Ye X
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- Hydrology, Environmental Monitoring methods, Models, Theoretical, Oceans and Seas, Seawater chemistry, Water Pollutants, Chemical chemistry
- Abstract
This chapter provides a review of the fate and transport modelling of emerging pollutants (EPs) and discusses the major research challenges. The overwhelming limitation of the past modelling studies has been the lack of data necessary for model validation, thus calling for large-scale field data sampling. The identification and understanding of fate and transport processes and their interactions of the target EPs and the corresponding selection of appropriate parameter values were also challenging. Such limitations and challenges were evidenced by the elaboration of the representative models in the field. The review also reveales that the model parameter values varied significantly with the EPs (and chemical compositions) and media of concerns. Sensitivity analysis was found to be necessary for modelling of those EPs with limited references in the literature. In comparison with traditional water pollutants, the concentrations of many EPs in water bodies are usually low and even at a trace level, leading to uncertainties or inaccuracy in measured data. This could further challenge model calibration and validation, and especially the determination of parameter values when lacking sufficient data support. How to improve the existing models to address such an issue special for EPs is an urgent task for researchers to ensure the accuracy and reliability of modelling results., (© 2018 Elsevier Ltd All rights reserved.)
- Published
- 2018
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17. A Comprehensive Evaluation of the Genetic Relatedness of Listeria monocytogenes Serotype 4b Variant Strains.
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Burall LS, Grim CJ, Mammel MK, and Datta AR
- Abstract
Recently, we have identified a link between four listeriosis incidents/outbreaks to a variant of Listeria monocytogenes (Lm) serotype 4b strains, 4bV. Although 4bV strains have been reported from clinical specimens as well as from foods, listeriosis outbreaks occurring in 2014-2016 were the first reported outbreaks involving 4bV in the USA. Since traditional typing methods do not detect members of this group, we undertook a systematic and retrospective analysis of all Lm in the NCBI WGS Sequence Read Archive database to investigate the burden of 4bV strains among all listeriosis cases. This analysis identified the presence of isolates causing sporadic cases as well as those associated with the aforementioned outbreaks, as determined by WGS and traditional epidemiology. In total, approximately 350 Lm 4bV strains were identified from multiple parts of the USA as well as from Australia and Chile, dating back to 2001. The genomic relatedness of these strains was compared using the CFSAN SNP Pipeline and multi-virulence-locus sequence typing (MVLST). Using the CFSAN Pipeline tool, the 4bV strains were found to group into seven clusters that were separate from 4b strains. All seven clades appeared to contain isolates from both clinical and non-clinical sources. Conversely, the MVLST analysis revealed that practically all of the strains belonged to a single clade, suggesting that 4bV strains from disparate geographic regions and sources are under varied selective pressure, restricting diversity across these six virulence loci while allowing more variability across the genome as a whole. Further evaluation of these 4bV strains identified genes potentially acquired from a lineage II source external to the lmo0733-lmo0739 region, as well as highly conserved SNPs unique to the 4bV strains when compared to those from other lineages. Taken together, these data suggest that 4bV strains have undergone adaptive responses to selective pressures that may enhance survival in the environment while maintaining the pathogenic potential of serotype 4b strains.
- Published
- 2017
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18. Assessment of Listeria monocytogenes virulence in the Galleria mellonella insect larvae model.
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Rakic Martinez M, Wiedmann M, Ferguson M, and Datta AR
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- Animals, Disease Models, Animal, Gene Deletion, Larva microbiology, Lepidoptera growth & development, Listeria monocytogenes genetics, Listeriosis microbiology, Virulence genetics, Lepidoptera microbiology, Listeria monocytogenes pathogenicity
- Abstract
Several animal models have been used to understand the molecular basis of the pathogenicity, infectious dose and strain to strain variation of Listeria monocytogenes. The greater wax worm Galleria mellonella, as an alternative model, provides some useful advantages not available with other models and has already been described as suitable for the virulence assessment of various pathogens including L. monocytogenes. The objectives of this study are: 1) confirming the usefulness of this model with a wide panel of Listeria spp. including non-pathogenic L. innocua, L. seeligeri, L. welshimeri and animal pathogen L. ivanovii; 2) assessment of virulence of several isogenic in-frame deletion mutants in virulence and stress related genes of L. monocytogenes and 3) virulence assessment of paired food and clinical isolates of L. monocytogenes from 14 major listeriosis outbreaks occurred worldwide between 1980 and 2015. Larvae injected with different concentrations of Listeria were incubated at 37°C and monitored over seven days for time needed to kill 50% of larvae (LT50) and to determine change of bacterial population in G. mellonella, 2 and 24 hours post-inoculation. Non-pathogenic members of Listeria and L. ivanovii showed significantly (P < 0.05) higher LT50 (lower virulence) than the wild type L. monocytogenes strains. Isogenic mutants of L. monocytogenes with the deletions in prfA, plcA, hly, actA and virR genes, also showed significantly (P < 0.05) higher LT50 than the wild type strain at the inoculum of 106CFU/larva. Food isolates had significantly (P < 0.05) lower virulence than the paired clinical isolates, at all three inoculum concentrations. L. monocytogenes strains related to non-invasive (gastroenteritis) outbreaks of listeriosis showed significantly (P < 0.05) lower virulence than isolates of the same serotype obtained from outbreaks with invasive symptoms. The difference, however, was dose and strain- dependent. No significant differences in virulence were observed among the serotype tested in this study.
- Published
- 2017
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19. Growth Kinetics of Listeria monocytogenes in Cut Produce.
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Salazar JK, Sahu SN, Hildebrandt IM, Zhang L, Qi Y, Liggans G, Datta AR, and Tortorello ML
- Subjects
- Colony Count, Microbial, Cucumis melo microbiology, Food Handling, Humans, Kinetics, Temperature, Food Contamination prevention & control, Food Microbiology, Listeria monocytogenes growth & development, Vegetables microbiology
- Abstract
Cut produce continues to constitute a significant portion of the fresh fruit and vegetables sold directly to consumers. As such, the safety of these items during storage, handling, and display remains a concern. Cut tomatoes, cut leafy greens, and cut melons, which have been studied in relation to their ability to support pathogen growth, have been specifically identified as needing temperature control for safety. Data are needed on the growth behavior of foodborne pathogens in other types of cut produce items that are commonly offered for retail purchase and are potentially held without temperature control. This study assessed the survival and growth of Listeria monocytogenes in cut produce items that are commonly offered for retail purchase, specifically broccoli, green and red bell peppers, yellow onions, canned green and black olives, fresh green olives, cantaloupe flesh and rind, avocado pulp, cucumbers, and button mushrooms. The survival of L. monocytogenes strains representing serotypes 1/2a, 1/2b, and 4b was determined on the cut produce items for each strain individually at 5, 10, and 25°C for up to 720 h. The modified Baranyi model was used to determine the growth kinetics (the maximum growth rates and maximum population increases) in the L. monocytogenes populations. The products that supported the most rapid growth of L. monocytogenes, considering the fastest growth and resulting population levels, were cantaloupe flesh and avocado pulp. When stored at 25°C, the maximum growth rates for these products were 0.093 to 0.138 log CFU/g/h and 0.130 to 0.193 log CFU/g/h, respectively, depending on the strain. Green olives and broccoli did not support growth at any temperature. These results can be used to inform discussions surrounding whether specific time and temperature storage conditions should be recommended for additional cut produce items.
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- 2017
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20. A clade of Listeria monocytogenes serotype 4b variant strains linked to recent listeriosis outbreaks associated with produce from a defined geographic region in the US.
- Author
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Burall LS, Grim CJ, and Datta AR
- Subjects
- Genome, Bacterial, Humans, Likelihood Functions, Listeria monocytogenes classification, Listeria monocytogenes isolation & purification, Listeriosis microbiology, Multilocus Sequence Typing, Polymorphism, Single Nucleotide, Sequence Analysis, Serogroup, United States epidemiology, Disease Outbreaks, Food Microbiology, Listeria monocytogenes genetics, Listeriosis epidemiology
- Abstract
Four listeriosis incidences/outbreaks, spanning 19 months, have been linked to Listeria monocytogenes serotype 4b variant (4bV) strains. Three of these incidents can be linked to a defined geographical region, while the fourth is likely to be linked. In this study, whole genome sequencing (WGS) of strains from these incidents was used for genomic comparisons using two approached. The first was JSpecies tetramer, which analyzed tetranucleotide frequency to assess relatedness. The second, the CFSAN SNP Pipeline, was used to perform WGS SNP analyses against three different reference genomes to evaluate relatedness by SNP distances. In each case, unrelated strains were included as controls. The analyses showed that strains from these incidents form a highly related clade with SNP differences of ≤101 within the clade and >9000 against other strains. Multi-Virulence-Locus Sequence Typing, a third standardized approach for evaluation relatedness, was used to assess the genetic drift in six conserved, known virulence loci and showed a different clustering pattern indicating possible differences in selection pressure experienced by these genes. These data suggest a high degree of relatedness among these 4bV strains linked to a defined geographic region and also highlight the possibility of alterations related to adaptation and virulence.
- Published
- 2017
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21. Comparative evaluation of direct plating and most probable number for enumeration of low levels of Listeria monocytogenes in naturally contaminated ice cream products.
- Author
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Chen Y, Pouillot R, S Burall L, Strain EA, Van Doren JM, De Jesus AJ, Laasri A, Wang H, Ali L, Tatavarthy A, Zhang G, Hu L, Day J, Sheth I, Kang J, Sahu S, Srinivasan D, Brown EW, Parish M, Zink DL, Datta AR, Hammack TS, and Macarisin D
- Subjects
- Agar, Algorithms, Bayes Theorem, Culture Media, Least-Squares Analysis, Limit of Detection, Polymerase Chain Reaction, Probability, Reproducibility of Results, Colony Count, Microbial methods, Food Contamination analysis, Food Microbiology, Ice Cream microbiology, Listeria monocytogenes isolation & purification
- Abstract
A precise and accurate method for enumeration of low level of Listeria monocytogenes in foods is critical to a variety of studies. In this study, paired comparison of most probable number (MPN) and direct plating enumeration of L. monocytogenes was conducted on a total of 1730 outbreak-associated ice cream samples that were naturally contaminated with low level of L. monocytogenes. MPN was performed on all 1730 samples. Direct plating was performed on all samples using the RAPID'L.mono (RLM) agar (1600 samples) and agar Listeria Ottaviani and Agosti (ALOA; 130 samples). Probabilistic analysis with Bayesian inference model was used to compare paired direct plating and MPN estimates of L. monocytogenes in ice cream samples because assumptions implicit in ordinary least squares (OLS) linear regression analyses were not met for such a comparison. The probabilistic analysis revealed good agreement between the MPN and direct plating estimates, and this agreement showed that the MPN schemes and direct plating schemes using ALOA or RLM evaluated in the present study were suitable for enumerating low levels of L. monocytogenes in these ice cream samples. The statistical analysis further revealed that OLS linear regression analyses of direct plating and MPN data did introduce bias that incorrectly characterized systematic differences between estimates from the two methods., (Published by Elsevier B.V.)
- Published
- 2017
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22. Infectious Dose of Listeria monocytogenes in Outbreak Linked to Ice Cream, United States, 2015.
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Pouillot R, Klontz KC, Chen Y, Burall LS, Macarisin D, Doyle M, Bally KM, Strain E, Datta AR, Hammack TS, and Van Doren JM
- Subjects
- Aged, Aged, 80 and over, Bacterial Load, Food Contamination, Food Microbiology, History, 21st Century, Humans, Listeria monocytogenes, Listeriosis history, Listeriosis transmission, Population Surveillance, United States epidemiology, Disease Outbreaks, Foodborne Diseases epidemiology, Ice Cream microbiology, Listeriosis epidemiology, Listeriosis microbiology
- Abstract
The relationship between the number of ingested Listeria monocytogenes cells in food and the likelihood of developing listeriosis is not well understood. Data from an outbreak of listeriosis linked to milkshakes made from ice cream produced in 1 factory showed that contaminated products were distributed widely to the public without any reported cases, except for 4 cases of severe illness in persons who were highly susceptible. The ingestion of high doses of L. monocytogenes by these patients infected through milkshakes was unlikely if possible additional contamination associated with the preparation of the milkshake is ruled out. This outbreak illustrated that the vast majority of the population did not become ill after ingesting a low level of L. monocytogenes but raises the question of listeriosis cases in highly susceptible persons after distribution of low-level contaminated products that did not support the growth of this pathogen.
- Published
- 2016
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23. Prevalence and Level of Listeria monocytogenes in Ice Cream Linked to a Listeriosis Outbreak in the United States.
- Author
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Chen YI, Burall LS, Macarisin D, Pouillot R, Strain E, DE Jesus AJ, Laasri A, Wang H, Ali L, Tatavarthy A, Zhang G, Hu L, Day J, Kang J, Sahu S, Srinivasan D, Klontz K, Parish M, Evans PS, Brown EW, Hammack TS, Zink DL, and Datta AR
- Subjects
- Disease Outbreaks, Food Contamination, Food Microbiology, Listeriosis, Prevalence, United States, Ice Cream, Listeria monocytogenes
- Abstract
A most-probable-number (MPN) method was used to enumerate Listeria monocytogenes in 2,320 commercial ice cream scoops manufactured on a production line that was implicated in a 2015 listeriosis outbreak in the United States. The analyzed samples were collected from seven lots produced in November 2014, December 2014, January 2015, and March 2015. L. monocytogenes was detected in 99% (2,307 of 2,320) of the tested samples (lower limit of detection, 0.03 MPN/g), 92% of which were contaminated at <20 MPN/g. The levels of L. monocytogenes in these samples had a geometric mean per lot of 0.15 to 7.1 MPN/g. The prevalence and enumeration data from an unprecedented large number of naturally contaminated ice cream products linked to a listeriosis outbreak provided a unique data set for further understanding the risk associated with L. monocytogenes contamination for highly susceptible populations.
- Published
- 2016
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24. Purification and Characterization of a Rabbit Serum Factor That Kills Listeria Species and Other Foodborne Bacterial Pathogens.
- Author
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Kothary MH, Franco AA, Tall BD, Gopinath GR, and Datta AR
- Subjects
- Amino Acid Sequence, Animals, Anti-Bacterial Agents pharmacology, Antibodies, Monoclonal pharmacology, Blood Proteins chemistry, Blood Proteins isolation & purification, Complement C3a chemistry, Complement C3a immunology, Food Microbiology, Foodborne Diseases microbiology, Hot Temperature, Humans, Hydrogen-Ion Concentration, Sequence Analysis, Protein, Sequence Homology, Sodium Chloride pharmacology, Anti-Bacterial Agents blood, Blood Proteins pharmacology, Listeria monocytogenes drug effects, Rabbits blood
- Abstract
In an in-vitro assay, rabbit serum, but not human serum, killed Listeria monocytogenes, a foodborne pathogen. The aim of our study was to purify and partially characterize this killing factor. Listericidin was purified from rabbit serum by a single-step ion-exchange chromatography with DEAE-Sephadex A-50 and its antimicrobial activity was assessed by a microdilution method. Listericidin is a protein with a molecular weight of 9 kDa and an isoelectric point of 8.1. It kills L. monocytogenes at 4°C, 25°C, and 37°C, and its activity is resistant to heat (boiling) and acidic conditions (pH <2). Listericidin's activity is inhibited by sodium chloride and various growth media, is sensitive to proteolytic enzymes and is enhanced by calcium chloride, and is neutralized by monoclonal antibodies to human complement C3a. However, the listericidin reacts weakly with these antibodies in an ELISA. The first 33 N-terminal residues of listericidin (SVQLTEKRMDKVGQYTNKELRKXXEDGMRDNPM) have homology to various complement C3a components. Listericidin also kills other Listeria spp., Vibrio spp., Salmonella spp., Escherichia spp., Cronobacter spp., and Bacillus spp. The listericidin peptide purified in a single-step chromatography is pH and heat stable, and has a broad antimicrobial spectrum against major foodborne pathogens in addition to L. monocytogenes.
- Published
- 2016
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25. Whole Genome Sequence Analysis Using JSpecies Tool Establishes Clonal Relationships between Listeria monocytogenes Strains from Epidemiologically Unrelated Listeriosis Outbreaks.
- Author
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Burall LS, Grim CJ, Mammel MK, and Datta AR
- Subjects
- Humans, Listeria monocytogenes isolation & purification, Disease Outbreaks, Genomics methods, Listeria monocytogenes genetics, Listeria monocytogenes physiology, Listeriosis epidemiology, Listeriosis microbiology, Sequence Analysis, DNA methods
- Abstract
In an effort to build a comprehensive genomic approach to food safety challenges, the FDA has implemented a whole genome sequencing effort, GenomeTrakr, which involves the sequencing and analysis of genomes of foodborne pathogens. As a part of this effort, we routinely sequence whole genomes of Listeria monocytogenes (Lm) isolates associated with human listeriosis outbreaks, as well as those isolated through other sources. To rapidly establish genetic relatedness of these genomes, we evaluated tetranucleotide frequency analysis via the JSpecies program to provide a cursory analysis of strain relatedness. The JSpecies tetranucleotide (tetra) analysis plots standardized (z-score) tetramer word frequencies of two strains against each other and uses linear regression analysis to determine similarity (r2). This tool was able to validate the close relationships between outbreak related strains from four different outbreaks. Included in this study was the analysis of Lm strains isolated during the recent caramel apple outbreak and stone fruit incident in 2014. We identified that many of the isolates from these two outbreaks shared a common 4b variant (4bV) serotype, also designated as IVb-v1, using a qPCR protocol developed in our laboratory. The 4bV serotype is characterized by the presence of a 6.3 Kb DNA segment normally found in serotype 1/2a, 3a, 1/2c and 3c strains but not in serotype 4b or 1/2b strains. We decided to compare these strains at a genomic level using the JSpecies Tetra tool. Specifically, we compared several 4bV and 4b isolates and identified a high level of similarity between the stone fruit and apple 4bV strains, but not the 4b strains co-identified in the caramel apple outbreak or other 4b or 4bV strains in our collection. This finding was further substantiated by a SNP-based analysis. Additionally, we were able to identify close relatedness between isolates from clinical cases from 1993-1994 and a single case from 2011 as well as links between two isolates from over 30 years ago. The identification of these potential links shows that JSpecies Tetra analysis can be a useful tool in rapidly assessing genetic relatedness of Lm isolates during outbreak investigations and for comparing historical isolates. Our analyses led to the identification of a highly related clonal group involved in two separate outbreaks, stone fruit and caramel apple, and suggests the possibility of a new genotype that may be better adapted for certain foods and/or environment.
- Published
- 2016
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26. A novel gene, lstC, of Listeria monocytogenes is implicated in high salt tolerance.
- Author
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Burall LS, Simpson AC, Chou L, Laksanalamai P, and Datta AR
- Subjects
- Acetyltransferases chemistry, Acetyltransferases genetics, Bacterial Proteins chemistry, Bacterial Proteins genetics, Listeria monocytogenes chemistry, Listeria monocytogenes genetics, Listeria monocytogenes metabolism, Operon, Protein Structure, Tertiary, Salt Tolerance, Acetyltransferases metabolism, Bacterial Proteins metabolism, Listeria monocytogenes enzymology, Sodium Chloride metabolism
- Abstract
Listeria monocytogenes, causative agent of human listeriosis, has been isolated from a wide variety of foods including deli meats, soft cheeses, cantaloupes, sprouts and canned mushrooms. Standard control measures for restricting microbial growth such as refrigeration and high salt are often inadequate as L. monocytogenes grows quite well in these environments. In an effort to better understand the genetic and physiological basis by which L. monocytogenes circumvents these controls, a transposon library of L. monocytogenes was screened for changes in their ability to grow in 7% NaCl and/ or at 5 °C. This work identified a transposon insertion upstream of an operon, here named lstABC, that led to a reduction in growth in 7% NaCl. In-frame deletion studies identified lstC which codes for a GNAT-acetyltransferase being responsible for the phenotype. Transcriptomic and RT-PCR analyses identified nine genes that were upregulated in the presence of high salt in the ΔlstC mutant. Further analysis of lstC and the genes affected by ΔlstC is needed to understand LstC's role in salt tolerance., (Published by Elsevier Ltd.)
- Published
- 2015
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27. Whole-Genome Sequencing Identifies an Atypical Listeria monocytogenes Strain Isolated from Pet Foods.
- Author
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Burall LS, Grim C, Gopinath G, Laksanalamai P, and Datta AR
- Abstract
Four Listeria isolates, including an atypical strain, were isolated from various pet foods and sequenced. We report here the draft genome sequences of these isolates and a comparative genomic analysis with a closely related human clinical isolate. An analysis of the atypical strain identified a frameshift mutation in the prfA gene., (Copyright © 2014 Burall et al.)
- Published
- 2014
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28. Genomic characterization of novel Listeria monocytogenes serotype 4b variant strains.
- Author
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Laksanalamai P, Huang B, Sabo J, Burall LS, Zhao S, Bates J, and Datta AR
- Subjects
- Australia, Bacterial Typing Techniques, Humans, Listeria monocytogenes isolation & purification, Listeriosis microbiology, Oligonucleotide Array Sequence Analysis, Phylogeny, Polymerase Chain Reaction methods, Serogroup, Genetic Variation, Genome, Bacterial, Listeria monocytogenes genetics
- Abstract
Over 90% of the human listeriosis cases are caused by Listeria monocytogenes serotypes 1/2a, 1/2b and 4b strains. As an alternative to antigen-antibody based serotyping, a PCR-based method for serogrouping has been developed and validated. In this communication, we report an in-depth analysis of five 4b variant strains, four clinical isolates from Australia and one environmental isolate from USA. Although these five strains were serotype 4b by classical serotyping method, the serogrouping PCR profiles of these strains show the presence of a 1/2a-3a specific amplicon in addition to the standard 4b-4d-4e specific amplicons. These strains were further analyzed by pulsed field gel electrophoresis, binary gene typing, multi-locus variable-number-tandem-repeat analysis and a high density pan-genomic Listeria microarray. Using these sub-typing results, the clinical isolates were grouped into two distinct genomic groups- one of which could be part of an unidentified outbreak. The microarray results when compared with our database of other 4b outbreak isolates indicated that the serotype 4b variant strains represent very different genotypic profiles than the known reported 4b outbreak strains representing major epidemic clones. The acquisition of serotype 1/2a gene clusters by the 4b variant strains appears to be independent in origin, spanning large areas of geographical and temporal space and may indicate predisposition of some 4b strains towards accepting DNA from related organisms.
- Published
- 2014
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29. Genome Sequences of Listeria monocytogenes Serotype 4b Variant Strains Isolated from Clinical and Environmental Sources.
- Author
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Laksanalamai P, Steyert SR, Burall LS, and Datta AR
- Abstract
Listeria monocytogenes strains that show a novel PCR serotyping profile (IVb-v1) have been reported recently. Here, we announce the draft genome sequences of five L. monocytogenes IVb-v1 strains isolated from the United States and Australia that harbor a 6.3-kb DNA cassette characteristic of serotype 1/2a strains.
- Published
- 2013
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30. Construction of Listeria monocytogenes mutants with in-frame deletions in the phosphotransferase transport system (PTS) and analysis of their growth under stress conditions.
- Author
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Liu Y, Ceruso M, Jiang Y, Datta AR, Carter L, Strain E, Pepe T, Anastasi A, and Fratamico P
- Subjects
- Bacterial Proteins metabolism, Food Contamination, Food Microbiology, Gene Deletion, Genes, Bacterial, Hydrogen-Ion Concentration, Listeria monocytogenes growth & development, Listeria monocytogenes isolation & purification, Nisin analysis, Phenotype, Phosphotransferases metabolism, Sodium Chloride analysis, Bacterial Proteins genetics, Gene Expression Regulation, Bacterial, Listeria monocytogenes genetics, Phosphotransferases genetics, Stress, Physiological
- Abstract
Listeria monocytogenes is a foodborne pathogen that is difficult to eliminate due to its ability to survive under different stress conditions such as low pH and high salt. To better control this pathogen in food, it is important to understand its survival mechanisms under these stress conditions. LMOf2365_0442, 0443, and 0444 encode for phosphotransferase transport system (PTS) permease (fructose-specific IIABC components) that is responsible for sugar transport. LMOf2365_0445 encodes for glycosyl hydrolase. These genes were induced by high pressure and inhibited under salt treatments; therefore, we hypothesized that genes encoding these PTS proteins may be involved in general stress responses. To study the function of these genes, deletion mutants of the PTS genes (LMOf2365_0442, LMOf2365_0443, and LMOf2365_0444) and the downstream gene LMOf2365_0445 were created in L. monocytogenes strain F2365. These deletion mutants were tested under different stress conditions. The growth of ∆LMOf2365_0445 was increased under nisin (125 μg/mL) treatments compared to the wild-type (P < 0.01). The growth of ∆LMOf2365_0442 in salt (brain-heart infusion medium with 5% NaCl) was significantly increased (P < 0.01), and ∆LMOf2365_0442 showed increased growth under acidic conditions (pH 5.0) compared to the wild-type (P < 0.01). The results from phenotypic arrays demonstrated that some of these mutants showed slightly slower growth under different carbon sources and basic conditions. The results indicate that deletion mutants ∆LMOf2365_0442 and ∆LMOf2365_0445 were more resistant to multiple stress conditions compared to the wild-type, suggesting that they may contribute to the general stress response in L. monocytogenes. An understanding of the growth of these mutants under multiple stress conditions may assist in the development of intervention strategies to control L. monocytogenes in food., (© 2013 Institute of Food Technologists®)
- Published
- 2013
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31. The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.
- Author
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Gopinath G, Hari K, Jain R, Mammel MK, Kothary MH, Franco AA, Grim CJ, Jarvis KG, Sathyamoorthy V, Hu L, Datta AR, Patel IR, Jackson SA, Gangiredla J, Kotewicz ML, LeClerc JE, Wekell M, McCardell BA, Solomotis MD, and Tall BD
- Subjects
- Bacteria classification, Bacteria isolation & purification, Data Mining, Food Microbiology, Foodborne Diseases prevention & control, Humans, Information Dissemination, Bacteria genetics, Database Management Systems instrumentation, Food Safety methods, Foodborne Diseases microbiology, Information Services instrumentation, Internet
- Abstract
Investigation of foodborne diseases requires the capture and analysis of time-sensitive information on microbial pathogens that is derived from multiple analytical methods and sources. The web-based Pathogen-annotated Tracking Resource Network (PATRN) system (www.patrn.net) was developed to address the data aggregation, analysis, and communication needs important to the global food safety community for the investigation of foodborne disease. PATRN incorporates a standard vocabulary for describing isolate metadata and provides a representational schema for a prototypic data exchange standard using a novel data loading wizard for aggregation of assay and attribution information. PATRN currently houses expert-curated, high-quality "foundational datasets" consisting of published experimental results from conventional assays and next generation analysis platforms for isolates of Escherichia coli, Listeria monocytogenes, and Salmonella, Shigella, Vibrio and Cronobacter species. A suite of computational tools for data mining, clustering, and graphical representation is available. Within PATRN, the public curated data repository is complemented by a secure private workspace for user-driven analyses, and for sharing data among collaborators. To demonstrate the data curation, loading wizard features, and analytical capabilities of PATRN, three use-case scenarios are presented. Use-case scenario one is a comparison of the distribution and prevalence of plasmid-encoded virulence factor genes among 249 Cronobacter strains with similar attributes to that of nine Cronobacter isolates from recent cases obtained between March and October, 2010-2011. To highlight PATRN's data management and trend finding tools, analysis of datasets, stored in PATRN as part of an ongoing surveillance project to identify the predominant molecular serogroups among Cronobacter sakazakii isolates observed in the USA is shown. Use-case scenario two demonstrates the secure workspace available for private users to upload and analyze sensitive data, and for collating cross-platform datasets to identify and validate congruent datapoints. SNP datasets from WGS assemblies and pan-genome microarrays are analyzed in a combinatorial fashion to determine relatedness of 33 Salmonella enterica strains to six strains collected as part of an outbreak investigation. Use-case scenario three utilizes published surveillance results that describe the incidence and sources of O157:H7 E. coli isolates associated with a produce pre-harvest surveillance study that occurred during 2002-2006. In summary, PATRN is a web-based integrated platform containing tools for the management, analysis and visualization of data about foodborne pathogens., (Published by Elsevier Ltd.)
- Published
- 2013
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32. Recent developments in molecular sub-typing of Listeria monocytogenes.
- Author
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Datta AR, Laksanalamai P, and Solomotis M
- Subjects
- Genomics methods, Humans, Listeria monocytogenes classification, Listeriosis epidemiology, Molecular Epidemiology, Listeria monocytogenes genetics, Listeriosis microbiology, Serotyping methods
- Abstract
As a vast majority of the human listeriosis cases are caused by serotypes 1/2a, 1/2b and 4b strains, it is imperative that strains from clinical as well as from food and environment are further characterised so that accurate and timely epidemiological determination of sources of the contamination can be established to minimise the disease burden. Recent developments in the field of genomics provide a great opportunity to use these tools towards the development of molecular sub-typing techniques with a greater degree of discrimination spanning the entire length of the genome. This brief review summarises a few of these DNA-based techniques with an emphasis on DNA microarray and other whole genome sequencing-based approaches and their usefulness in Listeria monocytogenes sub-typing and outbreak investigations.
- Published
- 2013
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33. Listeria monocytogenes mutants with altered growth phenotypes at refrigeration temperature and high salt concentrations.
- Author
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Burall LS, Laksanalamai P, and Datta AR
- Subjects
- Cheese microbiology, Cold Temperature, Culture Media chemistry, DNA Transposable Elements, Disease Outbreaks, Foodborne Diseases epidemiology, Foodborne Diseases microbiology, Gene Deletion, Gene Expression, Gene Expression Profiling, Genes, Bacterial, Listeria monocytogenes drug effects, Listeria monocytogenes isolation & purification, Listeria monocytogenes radiation effects, Mutagenesis, Insertional, Phenotype, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Listeria monocytogenes growth & development, Refrigeration, Salts metabolism
- Abstract
Listeria monocytogenes can survive and grow in refrigerated temperatures and high-salt environments. In an effort to better understand the associated mechanisms, a library of ∼ 5,200 transposon mutants of LS411, a food isolate from the Jalisco cheese outbreak, were screened for their ability to grow in brain heart infusion (BHI) broth at 5°C or in the presence of 7% NaCl and two mutants with altered growth profiles were identified. The LS522 mutant has a transposon insertion between secA2 and iap and showed a significant reduction in growth in BHI broth at 5°C and in the presence of 7% NaCl. Reverse transcriptase quantitative PCR (RT-qPCR) revealed a substantial reduction in the expression of iap. Additionally, a hypothetical gene (met), containing a putative S-adenosylmethionine-dependent methyltransferase domain, downstream of iap had downregulated expression. In-frame deletion mutants of iap and met were created in LS411. The LS560 (LS411 Δiap) mutant showed reduced growth at 5°C and in the presence of 7% salt, confirming its role in cold and salt growth attenuation. Surprisingly, the LS655 (LS411 Δmet) mutant showed slightly increased growth during refrigeration, though no alteration was seen in salt growth relative to the wild-type strain. The LS527 mutant, containing an insertion 36 bp upstream of the gbu operon, showed reduced expression of the gbu transcript by RT-qPCR and also showed growth reduction at 5°C and in the presence of 7% salt. This attenuation was severely exacerbated when the mutant was grown under the combined stresses. Analysis of the gbu operon deletion mutant showed decreased growth in 7% salt and refrigeration, supporting the previously characterized role for this gene in cold and salt adaptation. These studies indicate the potential for an intricate relationship between environmental stress regulation and virulence in L. monocytogenes.
- Published
- 2012
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34. Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with cantaloupe in US.
- Author
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Laksanalamai P, Joseph LA, Silk BJ, Burall LS, L Tarr C, Gerner-Smidt P, and Datta AR
- Subjects
- Humans, Listeria monocytogenes isolation & purification, Listeriosis microbiology, United States epidemiology, Disease Outbreaks, Fruit microbiology, Listeria monocytogenes genetics, Listeriosis epidemiology
- Abstract
A multistate listeriosis outbreak associated with cantaloupe consumption was reported in the United States in September, 2011. The outbreak investigation recorded a total of 146 invasive illnesses, 30 deaths and one miscarriage. Subtyping of the outbreak associated clinical, food and environmental isolates revealed two serotypes (1/2a and 1/2b) and four pulsed-field gel electrophoresis two-enzyme pattern combinations I, II, III, and IV, including one rarely seen before this outbreak. A DNA-microarray, Listeria GeneChip®, developed by FDA from 24 Listeria monocytogenes genome sequences, was used to further characterize a representative sample of the outbreak isolates. The microarray data (in the form of present or absent calls of specific DNA sequences) separated the isolates into two distinct groups as per their serotypes. The gene content of the outbreak-associated isolates was distinct from that of the previously-reported outbreak strains belonging to the same serotypes. Although the 1/2b outbreak associated isolates are closely related to each other, the 1/2a isolates could be further divided into two distinct genomic groups, one represented by pattern combination I strains and the other represented by highly similar pattern combinations III and IV strains. Gene content analysis of these groups revealed unique genomic sequences associated with these two 1/2a genovars. This work underscores the utility of multiple approaches, such as serotyping, PFGE and DNA microarray analysis to characterize the composition of complex polyclonal listeriosis outbreaks.
- Published
- 2012
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35. High density microarray analysis reveals new insights into genetic footprints of Listeria monocytogenes strains involved in listeriosis outbreaks.
- Author
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Laksanalamai P, Jackson SA, Mammel MK, and Datta AR
- Subjects
- Cluster Analysis, Humans, Listeriosis microbiology, Nucleic Acid Hybridization, Disease Outbreaks, Listeria monocytogenes genetics, Listeriosis epidemiology, Oligonucleotide Array Sequence Analysis
- Abstract
Listeria monocytogenes, a foodborne bacterial pathogen, causes invasive and febrile gastroenteritis forms of listeriosis in humans. Both invasive and febrile gastroenteritis listeriosis is caused mostly by serotypes 1/2a, 1/2b and 4b strains. The outbreak strains of serotype 1/2a and 4b could be further classified into several epidemic clones but the genetic bases for the diverse pathophysiology have been unsuccessful. DNA microarray provides an important tool to scan the entire genome for genetic signatures that may distinguish the L. monocytogenes strains belonging to different outbreaks. We have designed a pan-genomic microarray chip (Listeria GeneChip) containing sequences from 24 L. monocytogenes strains. The chip was designed to identify the presence/absence of genomic sequences, analyze transcription profiles and identify SNPs. Analysis of the genomic profiles of 38 outbreak strains representing 1/2a, 1/2b and 4b serotypes, revealed that the strains formed distinct genetic clusters adhering to their serotypes and epidemic clone types. Although serologically 1/2a and 1/b strains share common antigenic markers microarray analysis revealed that 1/2a strains are further apart from the closely related 1/2b and 4b strains. Within any given serotype and epidemic clone type the febrile gastroenteritis and invasive strains can be further distinguished based on several genetic markers including large numbers of phage genome, and intergenic sequences. Our results showed that the microarray-based data can be an important tool in characterization of L. monocytogenes strains involved in both invasive and gastroenteritis outbreaks. The results for the first time showed that the serotypes and epidemic clones are based on extensive pan-genomic variability and the 1/2b and 4bstrains are more closely related to each other than the 1/2a strains. The data also supported the hypothesis that the strains causing these two diverse outbreaks are genotypically different and this finding might be important in understanding the pathophysiology of this organism.
- Published
- 2012
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36. Cloning and partial characterization of a novel hemolysin gene of Vibrio tubiashii and the development of a PCR-based detection assay.
- Author
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Sathyamoorthy V, Datta AR, Lee CJ, Kothary MH, McCardell BA, and Tall BD
- Subjects
- Animals, Base Sequence, Chromosome Mapping, DNA Primers, Escherichia coli genetics, Escherichia coli metabolism, Genes, Bacterial, Hemolysin Proteins metabolism, Humans, Metalloproteases genetics, Metalloproteases metabolism, Molecular Sequence Data, Plasmids genetics, Riboflavin biosynthesis, Riboflavin genetics, Vibrio metabolism, Vibrio pathogenicity, Virulence Factors genetics, Virulence Factors metabolism, Hemolysin Proteins genetics, Reverse Transcriptase Polymerase Chain Reaction methods, Vibrio genetics
- Abstract
Vibrio tubiashii expresses virulence factors, such as a vulnificolysin-like hemolysin or cytolysin and a zinc metalloprotease, similar to those of other pathogenic vibrios. In this study, we report the cloning of a novel hemolysin gene of V. tubiashii in Escherichia coli . A V. tubiashii gene library was screened for hemolytic activity on sheep blood agar. Three hemolytic clones pGem:hly1, pGem:hly2, and pGem:hly3 were sequenced, and the sequences showed a strong homology to the ribA gene coding for guanosine triphosphate cyclohydrolase II (GCH II), required for riboflavin biosynthesis and reported to be responsible for hemolytic activity in Helicobacter pylori . The plasmids pGem:hly1 and pGem:hly3 when introduced into E. coli BSV18 (ribA18::Tn5) were able to restore growth of strain BSV18 in a medium without riboflavin and also produced hemolytic activity on blood agar. PCR primers based on the cloned hly-ribA sequence were tested using 23 different Vibrio strains representing 10 different species. Amplification of ribA gene locus only occurred with V. tubiashii strains. In summary, our results indicate that we have cloned a ribA homolog of V. tubiashii that imparts hemolytic activity to E. coli clones, and primers based on this gene locus might be useful as a species-specific identification tool for V. tubiashii.
- Published
- 2011
- Full Text
- View/download PDF
37. Cpa, the outer membrane protease of Cronobacter sakazakii, activates plasminogen and mediates resistance to serum bactericidal activity.
- Author
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Franco AA, Kothary MH, Gopinath G, Jarvis KG, Grim CJ, Hu L, Datta AR, McCardell BA, and Tall BD
- Subjects
- Amino Acid Sequence, Base Sequence, Blood Bactericidal Activity immunology, Complement System Proteins immunology, Complement System Proteins metabolism, Cronobacter sakazakii immunology, Humans, Immunoblotting, Molecular Sequence Data, Phylogeny, Plasminogen immunology, Plasminogen metabolism, Plasminogen Activators genetics, Plasminogen Activators immunology, Polymerase Chain Reaction, Sequence Analysis, Protein, Serine Endopeptidases genetics, Serine Endopeptidases immunology, Virulence Factors genetics, Virulence Factors immunology, Cronobacter sakazakii enzymology, Plasminogen Activators metabolism, Serine Endopeptidases metabolism, Virulence Factors metabolism
- Abstract
Cronobacter spp. are emerging neonatal pathogens in humans, associated with outbreaks of meningitis and sepsis. To cause disease, they must survive in blood and invade the central nervous system by penetrating the blood-brain barrier. C. sakazakii BAA-894 possesses an ~131-kb plasmid (pESA3) that encodes an outer membrane protease (Cpa) that has significant identity to proteins that belong to the Pla subfamily of omptins. Members of this subfamily of proteins degrade a number of serum proteins, including circulating complement, providing protection from the complement-dependent serum killing. Moreover, proteins of the Pla subfamily can cause uncontrolled plasmin activity by converting plasminogen to plasmin and inactivating the plasmin inhibitor α2-antiplasmin (α2-AP). These reactions enhance the spread and invasion of bacteria in the host. In this study, we found that an isogenic cpa mutant showed reduced resistance to serum in comparison to its parent C. sakazakii BAA-894 strain. Overexpression of Cpa in C. sakazakii or Escherichia coli DH5α showed that Cpa proteolytically cleaved complement components C3, C3a, and C4b. Furthermore, a strain of C. sakazakii overexpressing Cpa caused a rapid activation of plasminogen and inactivation of α2-AP. These results strongly suggest that Cpa may be an important virulence factor involved in serum resistance, as well as in the spread and invasion of C. sakazakii.
- Published
- 2011
- Full Text
- View/download PDF
38. Evaluation of a serotyping scheme using a combination of an antibody-based serogrouping method and a multiplex PCR assay for identifying the major serotypes of Listeria monocytogenes.
- Author
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Burall LS, Simpson AC, and Datta AR
- Subjects
- Colony Count, Microbial, Consumer Product Safety, DNA, Bacterial genetics, Food Microbiology, Humans, Listeria monocytogenes genetics, Listeria monocytogenes isolation & purification, Phylogeny, Sensitivity and Specificity, Species Specificity, Food Contamination analysis, Listeria monocytogenes classification, Polymerase Chain Reaction methods, Serotyping methods
- Abstract
To evaluate a simplified serotyping scheme, we used a combination of an antibody-based serogrouping assay that identified only type 1 and type 4 strains and a multiplex PCR-based serogrouping assay to analyze 362 L. monocytogenes isolates collected over more than 20 years. The multiplex PCR assay also incorporated a set of primers specific for L. monocytogenes hlyA gene to verify the species identification of these isolates. A subset (n = 120) of these isolates were also serotyped with the Denka Seiken serotyping scheme, which is often considered the "gold standard" for serotyping of L. monocytogenes. The results indicate that the multiplex PCR-based assay, in combination with an antibody-based serogrouping assay, correctly identified serotypes of 96% of the previously serotyped isolates. Compared with the Denka Seiken method, the combination method also performed better in identifying serotypes of 120 previously unserotyped L. monocytogenes isolates. Thus, the combination scheme appears to be a simple and rapid way to identify serotypes 1/2a, 1/2b, 1/2c, 3a, 3b, 3c, and 4b isolates, which are the predominant L. monocytogenes serotypes found in food, environmental, and clinical samples.
- Published
- 2011
- Full Text
- View/download PDF
39. Vibrio cholerae hemolysin is required for lethality, developmental delay, and intestinal vacuolation in Caenorhabditis elegans.
- Author
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Cinar HN, Kothary M, Datta AR, Tall BD, Sprando R, Bilecen K, Yildiz F, and McCardell B
- Subjects
- Animals, Bacterial Proteins genetics, Hemolysin Proteins genetics, Vibrio cholerae genetics, Virulence Factors genetics, Bacterial Proteins physiology, Caenorhabditis elegans microbiology, Hemolysin Proteins physiology, Intestines microbiology, Vacuoles microbiology, Vibrio cholerae metabolism, Vibrio cholerae pathogenicity, Virulence Factors physiology
- Abstract
Background: Cholera toxin (CT) and toxin-co-regulated pili (TCP) are the major virulence factors of Vibrio cholerae O1 and O139 strains that contribute to the pathogenesis of disease during devastating cholera pandemics. However, CT and TCP negative V. cholerae strains are still able to cause severe diarrheal disease in humans through mechanisms that are not well understood., Methodology/principal Findings: To determine the role of other virulence factors in V. cholerae pathogenesis, we used a CT and TCP independent infection model in the nematode Caenorhabditis elegans and identified the hemolysin A (hlyA) gene as a factor responsible for animal death and developmental delay. We demonstrated a correlation between the severity of infection in the nematode and the level of hemolytic activity in the V. cholerae biotypes. At the cellular level, V. cholerae infection induces formation of vacuoles in the intestinal cells in a hlyA dependent manner, consistent with the previous in vitro observations., Conclusions/significance: Our data strongly suggest that HlyA is a virulence factor in C. elegans infection leading to lethality and developmental delay presumably through intestinal cytopathic changes.
- Published
- 2010
- Full Text
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40. Role of the U.S. Food and Drug Administration in the regulatory management of human listeriosis in the United States.
- Author
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Klontz KC, McCarthy PV, Datta AR, Lee JO, Acheson DW, and Brackett RE
- Subjects
- Consumer Product Safety, Disease Outbreaks prevention & control, Food Microbiology, Humans, Listeriosis epidemiology, Prevalence, Public Health, Risk Assessment, United States epidemiology, Food Contamination prevention & control, Legislation, Food, Listeria monocytogenes growth & development, Listeriosis prevention & control, United States Food and Drug Administration
- Abstract
From 1986 to 2006, the incidence of listeriosis in the United States dropped from approximately seven to three cases per million population, a reduction that most likely reflects the joint efforts of industry, government, consumers, and academia. Herein, we describe the U.S. Food and Drug Administration (FDA) strategy over the past three decades to combat listeriosis. Specifically, we discuss early actions taken to address outbreaks during the 1980s, policy decisions regarding the presence of Listeria monocytogenes in FDA-regulated foods, FDA compliance programs with L. monocytogenes components, enforcement actions to remove L. monocytogenes-contaminated products from the market (i.e., recalls) or to prevent entry of such products into the market (i.e., import detentions and refusals), research milestones, outreach and education efforts, and selected special projects. Evolving demographic trends in the United States may pose a challenge to further reduction of the incidence of listeriosis.
- Published
- 2008
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41. Identification of the Escherichia coli K-12 ybhE gene as pgl, encoding 6-phosphogluconolactonase.
- Author
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Thomason LC, Court DL, Datta AR, Khanna R, and Rosner JL
- Subjects
- Carboxylic Ester Hydrolases chemistry, Culture Media, Escherichia coli enzymology, Escherichia coli growth & development, Escherichia coli Proteins chemistry, Mutation, Phenotype, Recombination, Genetic, Carboxylic Ester Hydrolases genetics, Carboxylic Ester Hydrolases metabolism, Escherichia coli genetics, Escherichia coli Proteins genetics, Escherichia coli Proteins metabolism
- Abstract
We report identification of the Escherichia coli ybhE gene as the pgl gene that encodes 6-phosphogluconolactonase. A tentative identification was first made based on the known approximate location of the pgl gene and the similarity of the presumptive ybhE-encoded protein sequence to a known Pgl enzyme. To test this notion, the ybhE gene was deleted and replaced with a drug marker. Like previously characterized pgl mutants, the ybhE deletion mutant had a Blu- phenotype (dark-blue staining with iodine due to accumulation of starch after growth on minimal maltose) and demonstrated impaired growth on minimal glucose medium when combined with a pgi mutation. Biochemical assay of crude extracts for 6-phosphogluconolactonase enzymatic activity showed that ybhE encodes this activity. The ybhE gene was transferred from the E. coli chromosome to an expression vector. This ybhE clone complemented both the precise deletion of the ybhE gene and a larger deletion, pglDelta8, for the Blu- phenotype and for phosphogluconolactonase activity, confirming that ybhE is the pgl gene. A newly observed phenotype of pgl strains is a lowered frequency of appearance of Bgl+ mutants that can utilize the beta-glucoside salicin. This is likely due to poor growth of Bgl+ pgl strains on salicin due to the accumulation of 6-phosphogluconolactone.
- Published
- 2004
- Full Text
- View/download PDF
42. Antimicrobial-resistant Salmonella serovars isolated from imported foods.
- Author
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Zhao S, Datta AR, Ayers S, Friedman S, Walker RD, and White DG
- Subjects
- DNA, Bacterial analysis, Drug Resistance, Bacterial, Drug Resistance, Multiple, Bacterial, Microbial Sensitivity Tests, Point Mutation, Polymerase Chain Reaction, Salmonella genetics, Salmonella isolation & purification, Serotyping, United States, United States Food and Drug Administration, Anti-Bacterial Agents pharmacology, Food Microbiology, Salmonella classification, Salmonella drug effects, Seafood microbiology
- Abstract
A total of 187 Salmonella isolates representing 82 serotypes recovered from 4072 imported foods in the year 2000 by the U.S. Food and Drug Administration field laboratories were tested for their susceptibility to 17 antimicrobials of human and veterinary importance. Fifteen (8%) isolates were resistant to at least one antimicrobial, and five (2.7%) were resistant to three or more antimicrobials. Most of the isolates (n=9) exhibited resistance to tetracycline. Four isolates from catfish or tilapia from Taiwan or Thailand also demonstrated resistance to nalidixic acid. These nalidixic acid-resistant Salmonella isolates possessed a point mutation at the Ser83 or Asp87 position in DNA gryase, resulting in amino acid substitutions to phenylalanine, tyrosine, or asparagine. One Salmonella Derby isolated from frozen anchovies imported from Cambodia was resistant to six antimicrobials including ampicillin, amoxicillin/clavulanic acid, chloramphenicol, sulfamethoxazole, tetracycline, and trimethoprim/sulfamethoxazole. Of seven isolates displaying resistance to sulfonamides, only one S. Derby and one Salmonella Agona contained class 1 integrons that were further shown to possess the aadA and pse-1 genes conferring resistance to streptomycin and ampicillin, respectively. This study indicates that antimicrobial-resistant Salmonella are present in imported foods, primarily of seafood origin, and stresses the need for continued surveillance of foodborne zoonotic bacterial pathogens from imported foods entering the United States.
- Published
- 2003
- Full Text
- View/download PDF
43. Antimicrobial resistance of food-related Salmonella isolates, 1999-2000.
- Author
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Kiessling CR, Cutting JH, Loftis M, Kiessling WM, Datta AR, and Sofos JN
- Subjects
- Drug Resistance, Bacterial, Drug Resistance, Multiple, Bacterial, Food Microbiology, Humans, Microbial Sensitivity Tests, Norfloxacin pharmacology, Public Health, Rifampin pharmacology, United States, United States Food and Drug Administration, Anti-Bacterial Agents pharmacology, Salmonella drug effects, Salmonella Food Poisoning prevention & control
- Abstract
Salmonellosis is a major foodborne infection in the United States, and strains of Salmonella that are resistant to a variety of antimicrobial agents have become a major public health concern. To estimate the incidence of antimicrobial-resistant Salmonella in our food supply, the U.S. Food and Drug Administration (FDA) has initiated screening of foodborne isolates for sensitivity to antimicrobial agents, including several antibiotics. Salmonella cultures (n = 502) isolated by FDA laboratories during fiscal year 2000 (1 October 1999 through 30 September 2000) from domestic and imported food products and related samples were tested for susceptibility to each of 12 antimicrobial agents using a disc diffusion assay. Because all isolates were resistant to rifampin (5 or 25 microg), only results with the remaining 11 antimicrobial agents are discussed in this paper. Of the 502 isolates, 247 (49.2%) were resistant to one or more antimicrobial agents, and of these 247 isolates, 170 (68.8%) were resistant to one antimicrobial agent, 33 (13.4%) to two antimicrobial agents, 25 (10.1%) to three antimicrobial agents, 7 (2.8%) to four antimicrobial agents, 8 (3.2%) to five antimicrobial agents, and 2 (0.8%) each to six and seven antimicrobial agents. No isolates were resistant to norfloxacin, whereas only seven were resistant to sulfamethoxazole/trimethoprim, six to trimethoprim, three to gentamicin, and one to ciprofloxacin. These results, for the first time, provide a baseline of data on the incidence of antimicrobial-resistant Salmonella in the U.S. food supply, which should be useful in determining the evolution of antimicrobial resistance in the future.
- Published
- 2002
- Full Text
- View/download PDF
44. Cell density dependent acid sensitivity in stationary phase cultures of enterohemorrhagic Escherichia coli O157:H7.
- Author
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Datta AR and Benjamin MM
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins metabolism, Colony Count, Microbial, Culture Media chemistry, Escherichia coli O157 genetics, Escherichia coli O157 growth & development, Hydrogen-Ion Concentration, Mutation, Sigma Factor genetics, Sigma Factor metabolism, Acids, Escherichia coli O157 physiology
- Abstract
Escherichia coli O157:H7, the causative agent of hemorrhagic colitis and hemolytic uremic syndrome, can survive in a highly acidic environment. The acid resistance of this organism, as measured by its ability to survive in low pH, depended on the density of the cells present during the assay. At low cell densities (=2 x 10(7) ml(-1)), about 100% of the stationary phase cells survived in Luria broth pH 2.5 at 37 degrees C for at least 7 h. The same cultures at high cell densities (2-5 x 10(9) ml(-1)) were about 1000-fold more sensitive under identical conditions. Exponential phase cultures did not exhibit the cell density effect. The increased acid sensitivity at high cell densities was absent in the stationary phase cultures of a rpoS mutant (rpoS::pRR10) of an E. coli O157:H7 strain. Cell density dependent acid sensitivity of the stationary phase cultures was also observed in other enterohemorrhagic E. coli and Shigella strains. The increased acid sensitivity at high cell densities was absent in Gram-positive organisms.
- Published
- 1999
- Full Text
- View/download PDF
45. Factors controlling acid tolerance of Listeria monocytogenes: effects of nisin and other ionophores.
- Author
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Datta AR and Benjamin MM
- Subjects
- Animals, Culture Media chemistry, Escherichia coli O157 drug effects, Escherichia coli O157 metabolism, Food Microbiology, Humans, Hydrogen-Ion Concentration, Listeria monocytogenes growth & development, Listeria monocytogenes metabolism, Shigella flexneri drug effects, Shigella flexneri metabolism, Ionophores pharmacology, Listeria monocytogenes drug effects, Nisin pharmacology
- Abstract
The acid tolerance of a Listeria monocytogenes serotype 4b strain was studied by measuring its ability to survive at an acidic pH at 37 degrees C. The acid tolerance of L. monocytogenes was much lower than those of Escherichia coli O157:H7 and Shigella flexneri strains. This observation suggested a higher infective dose for L. monocytogenes than E. coli O157:H7 and Shigella. The susceptibility of L. monocytogenes to acidic pH was dependent upon growth medium pH and growth phase of the culture. Nisin and some other ionophores reduced the acid tolerance of both stationary-phase and log-phase cultures of L. monocytogenes. These studies indicated that nisin might be a useful candidate for controlling acid tolerance of L. monocytogenes.
- Published
- 1997
- Full Text
- View/download PDF
46. Acid tolerance of enterohemorrhagic Escherichia coli.
- Author
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Benjamin MM and Datta AR
- Subjects
- Acids, Colitis etiology, Culture Media chemistry, Escherichia coli growth & development, Escherichia coli Infections etiology, Food Microbiology, Foodborne Diseases etiology, Gastrointestinal Hemorrhage etiology, Hemolytic-Uremic Syndrome etiology, Humans, Hydrogen-Ion Concentration, Serotyping, Virulence, Escherichia coli metabolism, Escherichia coli pathogenicity
- Abstract
Enterohemorrhagic Escherichia coli (EHEC) strains were tested for their ability to survive in acid pH at 37 degrees C. No loss of viability was observed in an O157:H7 EHEC strain (ATCC 43895) at pH levels of 3.0 and 2.5 for at least 5 h. The level of acid tolerance of most EHEC isolates was very high, similar to that of Shigella flexneri strains. The acid tolerance was dependent on the growth phase and pH of the growth medium.
- Published
- 1995
- Full Text
- View/download PDF
47. Distinct T cell populations distinguish chronic myeloid leukaemia cells from lymphocytes in the same individual: a model for separating GVHD from GVL reactions.
- Author
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Datta AR, Barrett AJ, Jiang YZ, Guimarães A, Mavroudis DA, van Rhee F, Gordon AA, and Madrigal A
- Subjects
- Humans, Lymphocyte Activation, Lymphocyte Culture Test, Mixed, Lymphocyte Depletion, Receptors, Interleukin-2 immunology, Graft vs Host Disease immunology, Leukemia, Myelogenous, Chronic, BCR-ABL Positive immunology, T-Lymphocytes immunology
- Abstract
Donor lymphocyte responses to minor histocompatibility antigen (mHA) differences are involved in allo-responses between HLA matched pairs causing GVHD and graft-versus-leukaemia (GVL). Since some mHA are tissue-restricted, GVHD and GVL responses may be separable. We studied donor lymphocyte responses to patients with CML in a series of 10 HLA-matched sibling and 10 unrelated donor-recipient pairs comparing proliferation to recipient PHA blasts and CML cells and attempting to selectively deplete responses to PHA blasts in vitro. Responses in counts per min (c.p.m) to CML cells and PHA blasts were, respectively, 2809 +/- 2205 (SD) and 7376 +/- 1877 in related and 12,107 +/- 7191 and 26,136 +/- 22,479 in unrelated pairs. Autologous responses to PHA blasts were significantly lower (mean 779 +/- 735) (p < 0.001). Results correlated with clinical outcome: higher responses to recipient cells correlated with transplant-related death (p = 0.02 for CML and p = 0.06 for PHA blasts). Higher responses to CML correlated with GVHD grade > or = II (p = 0.025). Donor lymphocytes exposed to recipient PHA blasts for 5 days and treated with a ricin-conjugated anti-CD25 antibody retained over 75% of their response to CML but < 10% to PHA blasts. Similarly, depletion of response to CML but not to PHA blasts occurred when CML was the primary challenge. These results indicate that distinct populations of donor T cells respond to recipient leukaemic and non-leukaemic cells, and provide the basis for a clinically applicable technique to selectively deplete donor GVHD reacting cells while conserving GVL.
- Published
- 1994
48. Effects of glucose, growth temperature, and pH on listeriolysin O production in Listeria monocytogenes.
- Author
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Datta AR and Kothary MH
- Subjects
- Bacterial Proteins genetics, Culture Media, Gene Expression Regulation, Bacterial drug effects, Glucose pharmacology, Heat-Shock Proteins genetics, Hemolysin Proteins genetics, Hydrogen-Ion Concentration, Listeria monocytogenes genetics, Listeria monocytogenes growth & development, Methylglucosides pharmacology, Temperature, Bacterial Proteins biosynthesis, Bacterial Toxins, Heat-Shock Proteins biosynthesis, Hemolysin Proteins biosynthesis, Listeria monocytogenes metabolism
- Abstract
Expression of listeriolysin O of Listeria monocytogenes as a function of different growth conditions was studied by performing a direct hemolysin assay, immunoblotting experiments, and an enzyme-linked immunosorbent assay. Expression of listeriolysin O was reduced at a lower growth temperatures (26 degrees C) and at higher glucose concentrations (> or = 0.3%) in the growth media. The effect of glucose appeared to be due to a change in the pH of the growth media.
- Published
- 1993
- Full Text
- View/download PDF
49. Identification and enumeration of Listeria monocytogenes by nonradioactive DNA probe colony hybridization.
- Author
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Datta AR, Moore MA, Wentz BA, and Lane J
- Subjects
- Food Microbiology, Genes, Synthetic, Listeria monocytogenes genetics, Membranes, Artificial, Nucleic Acid Hybridization, Nucleic Acid Renaturation, Phosphorus Radioisotopes, Sensitivity and Specificity, Colony Count, Microbial methods, DNA Probes standards, DNA, Bacterial chemistry, Listeria monocytogenes isolation & purification
- Abstract
A plasmid containing the cloned listeriolysin gene of Listeria monocytogenes was used as a probe to identify Listeria strains by DNA colony hybridization. The probe DNA was labeled with horseradish peroxidase in the presence of glutaraldehyde. After the hybridization and wash procedures, the hybrid molecules were detected by luminescence, which resulted from the oxidation of luminol by a horseradish peroxidase-hydrogen peroxide-coupled reaction. Of the 150 Listeria strains and 16 non-Listeria strains examined, the probe hybridized only with L. monocytogenes. The technique was also used to enumerate L. monocytogenes in artificially contaminated foods.
- Published
- 1993
- Full Text
- View/download PDF
50. Application of a Synthetic Listeriolysin O Gene Probe to the Identification of β-Hemolytic Listeria monocytogenes in Retail Ground Beef.
- Author
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Mohamood A, Datta AR, and Eribo BE
- Abstract
The synthetic gene probe is a 20 mer oligonucleotide, derived from listeriolysin O gene sequence of Listeria monocytogenes and shown to be specific for strains of this organism. This probe was used in a DNA-colony hybridization assay to evaluate its suitability in detecting (β-hemolytic L. monocytogenes in ground beef. Thirty-six ground beef samples were plated onto three media: Trypticase soy agar with 0.6% yeast extract, lithium chloride-phenylethanol-moxalactam agar and Martin's agar, both directly and after selective enrichment in Food and Drug Administration broth. Of the 118 gram-positive and catalase-positive isolates selected from the plates, only 24 gave detectable hybridization signal with the probe. CAMP-test and standard biochemical tests also revealed that only these 24 probe positive isolates were (β-hemolytic L. monocytogenes . Of the 36 samples of ground beef, 6 were positive for Listeria spp., out of which 4 were L. monocytogenes .
- Published
- 1992
- Full Text
- View/download PDF
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