22 results on '"Darya Fadavi"'
Search Results
2. Large Scale Advanced Data Analytics on Skin Conditions from Genotype to Phenotype
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Maryam Panahiazar, Darya Fadavi, Jihad Aljabban, Laraib Safeer, Imad Aljabban, and Dexter Hadley
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Data Analytics ,Large Scale ,Meta Analysis ,Information technology ,T58.5-58.64 - Abstract
A crucial factor in Big Data is to take advantage of available data and use that for new discovery or hypothesis generation. In this study, we analyzed Large-scale data from the literature to OMICS, such as the genome, proteome or metabolome, respectively, for skin conditions. Skin acts as a natural barrier to the world around us and protects our body from different conditions, viruses, and bacteria, and plays a big part in appearance. We have included Hyperpigmentation, Postinflammatory Hyperpigmentation, Melasma, Rosacea, Actinic keratosis, and Pigmentation in this study. These conditions have been selected based on reasoning of big scale UCSF patient data of 527,273 females from 2011 to 2017, and related publications from 2000 to 2017 regarding skin conditions. The selected conditions have been confirmed with experts in the field from different research centers and hospitals. We proposed a novel framework for large-scale available public data to find the common genotypes and phenotypes of different skin conditions. The outcome of this study based on Advance Data Analytics provides information on skin conditions and their treatments to the research community and introduces new hypotheses for possible genotype and phenotype targets. The novelty of this work is a meta-analysis of different features on different skin conditions. Instead of looking at individual conditions with one or two features, which is how most of the previous works are conducted, we looked at several conditions with different features to find the common factors between them. Our hypothesis is that by finding the overlap in genotype and phenotype between different skin conditions, we can suggest using a drug that is recommended in one condition, for treatment in the other condition which has similar genes or other common phenotypes. We identified common genes between these skin conditions and were able to find common areas for targeting between conditions, such as common drugs. Our work has implications for discovery and new hypotheses to improve health quality, and is geared towards making Big Data useful.
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- 2018
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3. Commentary on: Alternative Abdominal Wall Plication Techniques: A Review of Current Literature
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Darya Fadavi and Jeffrey A Gusenoff
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Surgery ,General Medicine - Published
- 2023
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4. Impact of payer status and hospital volume on outcomes after head and neck oncologic reconstruction
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Waverley He, Justin M. Sacks, Darya Fadavi, Oluseyi Aliu, and Leila S. Musavi
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Male ,medicine.medical_specialty ,Hospitals, Low-Volume ,Insurance Coverage ,Odds ,03 medical and health sciences ,Postoperative Complications ,0302 clinical medicine ,Hospital volume ,Internal medicine ,medicine ,Humans ,Hospital Mortality ,030212 general & internal medicine ,Healthcare Disparities ,Head and neck ,Aged ,Insurance, Health ,Medicaid ,business.industry ,Head and neck cancer ,General Medicine ,Middle Aged ,Plastic Surgery Procedures ,medicine.disease ,United States ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Insurance status ,Female ,Surgery ,business ,Complication ,Hospitals, High-Volume - Abstract
Background High-volume centers improve outcomes in head and neck cancer (HNCA) reconstruction, yet it is unknown whether patients of all payer status benefit equally. Methods We identified patients undergoing HNCA surgery between 2002 and 2015 using the National Inpatient Sample. Outcomes included receipt of care at high-volume centers, receipt of reconstruction, and post-operative complications. Multivariate regression analysis was stratified by payer status. Results 37,442 patients received reconstruction out of 101,204 patients who underwent HNCA surgery (37.0%). Privately-insured and Medicaid patients had similar odds of receiving high-volume care (OR = 0.99, 95% CI = 0.87–1.11) and undergoing reconstruction (OR = 0.96, 95% CI = 0.86–1.05). Medicaid beneficiaries had higher odds of complication (OR = 1.36, 95% CI = 1.22–1.51). The discrepancy in complication odds was significant at low-volume (OR = 1.44, 95% CI = 1.12–1.84) and high-volume centers (OR = 1.30, 95% CI = 1.15–1.47). Conclusions Medicaid beneficiaries are as likely to receive care at high-volume centers and undergo reconstruction as privately-insured individuals. However, they have poorer outcomes than privately-insured individuals at both low- and high-volume centers.
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- 2021
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5. Perspectives of 281 patients with Mayer-Rokitansky-Küster-Hauser Syndrome on uterine transplantation
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Darya Fadavi, James H. Segars, Amy C. Lossie, Franca Kraenzlin, Nicole Fischer, Pooja Yesantharao, Justin M. Sacks, Halley Darrach, Helen Xun, and Bhuchitra Singh
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Adult ,0301 basic medicine ,Infertility ,medicine.medical_specialty ,46, XX Disorders of Sex Development ,Adolescent ,Psychological intervention ,Congenital Abnormalities ,Young Adult ,03 medical and health sciences ,Uterine transplantation ,0302 clinical medicine ,Informed consent ,Surveys and Questionnaires ,medicine ,Health insurance ,Humans ,Vulnerable population ,Mayer-Rokitansky-Kuster-Hauser Syndrome ,Mullerian Ducts ,030219 obstetrics & reproductive medicine ,business.industry ,Uterus ,Obstetrics and Gynecology ,Organ Transplantation ,medicine.disease ,Müllerian agenesis ,Cross-Sectional Studies ,030104 developmental biology ,Reproductive Medicine ,Family medicine ,Female ,business ,Infertility, Female - Abstract
Objectives To investigate the personal, ethical, and financial perspectives of individuals with Mayer-Rokitansky-Kuster-Hauser syndrome (MRKH), a congenital uterine factor infertility condition, regarding uterine transplantation (UTx). Design Cross-sectional, quantitative survey. Setting A 60-item anonymous electronic questionnaire was disseminated via social media sites. Patients International members of the Beautiful You MRKH Foundation. Interventions None. Main Outcome Measures The survey contained UTx educational materials followed by questions assessing participants’ baseline knowledge, global perceptions, financial concerns, and ethical considerations regarding UTx. Results We received 281 responses, with a mean participant age of 28.2 ± 9.8 years. After reviewing the education material, most participants considered receiving a UTx (73%), believed that it should be an option for all women with uterine factor infertility (86%), and believed that it should be covered by health insurance (78%). Respondents perceived the benefits of the procedure to outweigh the risks (67%) and considered it to be an ethical procedure (82%). Almost one-half (49%) were willing to spend more than $10,000 out of pocket to receive the procedure. When asked to rank the risk of UTx to self, donor, and fetus in order of personal importance, 21% ranked their own safety last. Conclusion There is a profound desire in the MRKH community for UTx to become more widely available and affordable. MRKH patients may represent a vulnerable population requiring special considerations for informed consent and rigorous evaluation for UTx. Providers caring for MRKH patients should be prepared to provide education about UTx and to thoughtfully engage with news and media outlets to communicate evidence-supported information.
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- 2021
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6. The Impact of Policy Reform on Utilization of Popular Reconstructive Procedures
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Pragna N. Shetty, Pooja Yesantharao, Amy Quan, Pathik Aravind, Waverley He, Darya Fadavi, and Oluseyi Aliu
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medicine.medical_specialty ,Reconstructive surgery ,Medicaid ,business.industry ,Mammaplasty ,Patient Protection and Affordable Care Act ,Specialty ,Procedure types ,United States ,Confidence interval ,Policy ,Elective Surgical Procedures ,Emergency medicine ,Health care ,medicine ,Humans ,Surgery ,business ,health care economics and organizations - Abstract
OBJECTIVES Medicaid beneficiaries systematically face challenges in accessing healthcare, especially with regard to specialty services like reconstructive surgery. This study evaluated the impact of 2 healthcare reform policies, Medicaid expansion and global hospital budgeting, on utilization of reconstructive surgery by Medicaid patients. METHODS Utilization of reconstructive surgery by Medicaid patients in New Jersey (Medicaid expansion/no global budget), Maryland (Medicaid expansion/with global budgets), and Florida (no Medicaid expansion/no global budget) between 2012 and 2016 was compared using quasi-experimental, interrupted time-series modeling. Subgroup analyses by procedure type and urgency were also undertaken. RESULTS During the study period, the likelihood of Medicaid patients using reconstructive surgery significantly increased in expansion states (Maryland: 0.3% [95% confidence interval = 0.17% to 0.42%] increase per quarter, P < 0.001; New Jersey: 0.4% [0.31% to 0.52%] increase per quarter, P = 0.004) when compared with Florida (nonexpansion state). Global budgeting did not significantly impact overall utilization of reconstructive procedures by Medicaid beneficiaries. Upon subgroup analyses, there was a greater increase in utilization of elective procedures than emergent procedures by Medicaid beneficiaries after Medicaid expansion (elective: 0.9% [0.8% to 1.3%] increase per quarter, P = 0.04; emergent/urgent: 0.2% [0.1% to 0.4%] increase per quarter, P = 0.02). In addition, Medicaid expansion had the greatest absolute effect on breast reconstruction (1.0% [95% confidence interval = 0.7% to 1.3%] increase per quarter) compared with other procedure types. CONCLUSIONS Medicaid expansion increased access to reconstructive surgery for Medicaid beneficiaries, especially for elective procedures. Encouragingly, although cost-constrictive, global hospital budgeting did not limit longitudinal utilization of reconstructive surgery by Medicaid patients, who are traditionally at higher risk for complications/readmissions.
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- 2020
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7. Treatment of Facial Fractures at Safety-Net Hospitals: A National Analysis of Inpatient Burden and Cost
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Patrick Chin, Darya Fadavi, Leila S. Musavi, Oluseyi Aliu, Robin Yang, and Miles J. Pfaff
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Facial trauma ,Adult ,medicine.medical_specialty ,Inpatients ,business.industry ,Medicaid ,Safety net ,General Medicine ,Odds ratio ,Length of Stay ,medicine.disease ,Hospitals ,United States ,Odds ,Otorhinolaryngology ,Bayesian multivariate linear regression ,Health care ,Emergency medicine ,Medicine ,Humans ,Surgery ,business ,Socioeconomic status ,Safety-net Providers - Abstract
PURPOSE Safety-net hospitals (SNHs) are vital in the care of trauma populations, but little is known about the burden of facial trauma presenting to SNHs. The authors sought to characterize the presentation and treatment of facial fractures across SNHs and determine the association between SNH care and healthcare utilization in patients undergoing fracture repair. METHODS Adult patients presenting with a facial fracture as their primary admitting diagnosis from the year 2012 to 2015 were identified in the National Inpatient Sample. The "safety-net burden" of each hospital was defined based on the proportion of Medicaid and self-pay discharges. Patient factors analyzed were sex, race, age, income level, insurance status, fracture location, and comorbidities. Hospital factors analyzed were safety-net burden, teaching status, geographic region, bed size, and ownership status. The main outcomes were length of stay (LOS), hospital costs, time to repair, and postoperative complications. RESULTS Of 78,730 patients, 27,080 (34.4%) were treated at SNHs and 24,844 (31.6%) were treated at non-SNHs. Compared to non-SNHs, patients treated at SNHs were more likely to undergo operative repair at SNHs (65.8% versus 53.9%, P
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- 2021
8. Recognizing the Vulnerable: Perspectives, Attitudes, and Interests of Women With Uterine Factor Infertility Towards Uterus Allotransplantation
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Helen Xun, Darya Fadavi, James H. Segars, Amanda Nickles Fader, Nicole Fischer, Justin M. Sacks, Pooja Yesantharao, Franca Kraenzlin, and Halley Darrach
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Infertility ,medicine.medical_specialty ,media_common.quotation_subject ,Fertility ,mayer–rokitansky–küster–hauser syndrome ,live birth ,uterine factor infertility ,reproduction ,uterus allotransplantation ,Informed consent ,medicine ,Health insurance ,Vulnerable population ,transplant ,survey ,reproductive health ,Private insurance ,media_common ,Reproductive health ,fertility ,Transplantation ,business.industry ,General Engineering ,Plastic Surgery ,medicine.disease ,Family medicine ,Obstetrics/Gynecology ,Live birth ,business - Abstract
Background: Uterine allotransplantation (UTx) is a novel therapy to allow women with uterine factor infertility (UFI) to bear their own children. To date, over 60 UTx have been performed, resulting in 15 live births. Our study investigates the attitudes, perspectives, and interests of women with UFI towards UTx. Methods: Anonymous questionnaires were distributed electronically to women diagnosed with UFI at Johns Hopkins Hospital between the years 2003 and 2018. Results: Thirty-one women with UFI were identified, resulting in 10 completed surveys. The average age was 31.7 ± 6.31 years, and the average age of diagnosis was 20 years (range 14-31); all 10 surveyed women had congenital UFI. Of note, 80% of women agreed that UTx should be an option for women with UFI, and 90% would consider receiving a UTx. The majority of the nine (90%) women who had previously heard of UTx learned about it from the news (5, 50%). When asked to rank the risks related to UTx in order of personal importance, only two women ranked themselves most important; the other woman ranked fetus and donor as more important. All women had health insurance (70% had private insurance), and 90% believed that UTx should be covered by health insurance. Conclusions: We surveyed women with UFI and found that the majority are willing to have UTx, despite the associated risks of the procedure. Taking into consideration the responses for ranking the importance of risks of the procedure, women with UFI should be considered a vulnerable population, requiring special considerations for UTx informed consents.
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- 2021
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9. The Zoom Boom: How Video Calling Impacts Attitudes Towards Aesthetic Surgery in the COVID-19 Era
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Chao Long, Kristen P. Broderick, Amanda Chow, Alexander H. Sun, Jonlin Chen, Carisa M. Cooney, and Darya Fadavi
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Adult ,Male ,2019-20 coronavirus outbreak ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Surveys and Questionnaires ,Medicine ,Humans ,Surgery, Plastic ,Pandemics ,AcademicSubjects/MED00987 ,business.industry ,SARS-CoV-2 ,COVID-19 ,Mean age ,General Medicine ,Telemedicine ,Surgery ,Cross-Sectional Studies ,Attitude ,Scale (social sciences) ,Commentary ,Original Article ,Female ,business - Abstract
Background The COVID-19 pandemic has led to the widespread adoption of video calling. A parallel growth in aesthetic surgery demand has been documented. Objectives The authors sought to identify associations between video call engagement and aesthetic surgery attitudes. Methods We distributed a cross-sectional survey via Amazon Mechanical Turk in November 2020. Respondents were asked to report their time spent video calling, video calling applications and features (eg, virtual backgrounds) they utilized, and aesthetic surgery attitudes employing the 15-item Acceptance of Cosmetic Surgery Scale (ACSS; higher scores indicate greater acceptance). ACSS scores were compared between video call users and non-users employing t tests. Pearson’s correlation coefficient was employed to quantify associations between ACSS scores and time spent on calls and multivariable analysis to estimate associations between video call engagement and ACSS scores. Results A total of 295 respondents (mean age, 37.6 years; 49.5% female) completed the survey. Across all video call applications surveyed, video call users had higher ACSS scores than non-users. Increased time respondents spent looking at their own face on video call was moderately associated with higher ACSS scores (r = 0.48, P < 0.01), whereas time spent looking at another person’s face was not associated with a change in ACSS scores (r = 0.09, P = 0.11). Increased video call utilization was associated with higher ACSS scores. Conclusions Increased video calling utilization is associated with increased acceptance of aesthetic surgery. Although the clinical significance of ACSS scores can be better elucidated, plastic surgeons should consider the effects of video calling on patient motivations for aesthetic surgery in the COVID-19 era.
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- 2021
10. Role of KASH domain lengths in the regulation of LINC complexes
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Akshay Rathish, Vyom Thakkar, Daniel A. Starr, Venecia A. Valdez, Uyen T. Vu, Hongyan Hao, Zeinab Jahed, Chris Tolentino, Samuel C. J. Kim, Darya Fadavi, and Mohammad R. K. Mofrad
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Nuclear Envelope ,LINC complex ,Amino Acid Motifs ,Protein domain ,Conserved sequence ,Structure-Activity Relationship ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,KASH domains ,Animals ,Humans ,Amino Acid Sequence ,Caenorhabditis elegans ,Cytoskeleton ,Molecular Biology ,Conserved Sequence ,030304 developmental biology ,0303 health sciences ,biology ,Cell Membrane ,Nuclear Functions ,fungi ,Articles ,Cell Biology ,biology.organism_classification ,Biomechanical Phenomena ,Cell biology ,Cytoplasm ,Multiprotein Complexes ,SUN domain ,030217 neurology & neurosurgery - Abstract
The linker of the nucleoskeleton and cytoskeleton (LINC) complex is formed by the conserved interactions between Sad-1 and UNC-84 (SUN) and Klarsicht, ANC-1, SYNE homology (KASH) domain proteins, providing a physical coupling between the nucleoskeleton and cytoskeleton that mediates the transfer of physical forces across the nuclear envelope. The LINC complex can perform distinct cellular functions by pairing various KASH domain proteins with the same SUN domain protein. For example, in Caenorhabditis elegans, SUN protein UNC-84 binds to two KASH proteins UNC-83 and ANC-1 to mediate nuclear migration and anchorage, respectively. In addition to distinct cytoplasmic domains, the luminal KASH domain also varies among KASH domain proteins of distinct functions. In this study, we combined in vivo C. elegans genetics and in silico molecular dynamics simulations to understand the relation between the length and amino acid composition of the luminal KASH domain, and the function of the SUN–KASH complex. We show that longer KASH domains can withstand and transfer higher forces and interact with the membrane through a conserved membrane proximal EEDY domain that is unique to longer KASH domains. In agreement with our models, our in vivo results show that swapping the KASH domains of ANC-1 and UNC-83, or shortening the KASH domain of ANC-1, both result in a nuclear anchorage defect in C. elegans.
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- 2019
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11. Public Perceptions and Experiences of Cancelled Surgeries Due to COVID-19: Twitter Analysis (Preprint)
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Waverley Y. He, Pooja Yesantharao, Darya Fadavi, and Oluseyi Aliu
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human activities ,health care economics and organizations - Abstract
BACKGROUND Elective procedures throughout the United States have been deferred in order to mitigate the spread of COVID-19 and treat critically ill patients. The impact of such widespread cancellations on patient well-being is not well understood. OBJECTIVE In this study, we characterize collective perceptions and experiences related to cancelled surgeries due to COVID-19. METHODS The top 200 Twitter posts with the keyword “cancelled surgery” were collected and qualitatively analyzed to identify public attitudes, beliefs, and outcomes. RESULTS Patients whose surgeries have been cancelled experience pain and disease progression. Anger and despair arise from long waiting periods and insufficient communication with surgeons, whereas optimism derives from a willingness to reallocate resources for the wider public good. Disagreement with surgical prioritization may stem from gaps in public understanding regarding risk-stratification. CONCLUSIONS As elective cases resume, monitoring real-time developments in public opinion and consequences of deferred care will inform best practices in patient communication.
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- 2020
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12. Method, Material, and Machine: A Review for the Surgeon Using Three-Dimensional Printing for Accelerated Device Production
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Christopher Shallal, Scott Clarke, Alison L. Wong, Justin M. Sacks, Nusaiba Baker, Sung Hoon Kang, Erica Lee, Gerald Brandacher, Darya Fadavi, and Helen Xun
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business.industry ,3D printing ,Fused filament fabrication ,Equipment Design ,Prostheses and Implants ,computer.software_genre ,Turnaround time ,Manufacturing engineering ,Surgical Equipment ,03 medical and health sciences ,0302 clinical medicine ,Learning curve ,030220 oncology & carcinogenesis ,Three dimensional printing ,Printing, Three-Dimensional ,Production (economics) ,Medicine ,Computer Aided Design ,Humans ,030211 gastroenterology & hepatology ,Surgery ,Activity-based costing ,business ,computer - Abstract
Background Physicians are at the forefront of identifying innovative targets to address current medical needs. 3D printing technology has emerged as a state-of-the-art method of prototyping medical devices or producing patient-specific models that is more cost-efficient, with faster turnaround time, in comparison to traditional prototype manufacturing. However, initiating 3D printing projects can be daunting due to the engineering learning curve, including the number of methodologies, variables, and techniques for printing from which to choose. To help address these challenges, we sought to create a guide for physicians interested in venturing into 3D printing. Study Design All commercially available, plug-and-play, material and stereolithography printers costing less than $15,000 were identified via web search. Companies were contacted to obtain quotes and information sheets for all printer models. The qualifying printers’ manufacturer specification sheets were reviewed, and pertinent variables were extracted. Results We reviewed 309 commercially available printers and materials and identified 118 printers appropriate for clinicians desiring plug-and-play models for accelerated device production. We synthesized this information into a decision-making tool to choose the appropriate parameters based on project goals. Conclusions There is a growing clinical need for medical devices to reduce costs of care and increase access to personalized treatments; however, the learning curve may be daunting for surgeons. In this review paper, we introduce the “3Ms of 3D printing” for medical professionals and provide tools and data sheets for selection of commercially available, affordable, plug-and-play 3D printers appropriate for surgeons interested in innovation.
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- 2020
13. Postoperative Free Flap Breast Protocol Optimizing Resources and Patient Safety
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Michele A. Manahan, Tobias J. Bos, Brian H. Cho, Benjamin T. Ostrander, Hannah M. Carl, Allison Haley, Darya Fadavi, Franca Kraenzlin, Gedge D. Rosson, Nima Khavanin, Justin M. Sacks, and Deepa Bhat
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Graft Rejection ,Reoperation ,medicine.medical_specialty ,Mammaplasty ,Free flap ,030230 surgery ,law.invention ,03 medical and health sciences ,Patient safety ,0302 clinical medicine ,law ,DIEP flap ,Cost Savings ,Medicine ,Humans ,Medical history ,Retrospective Studies ,business.industry ,Length of Stay ,Middle Aged ,Intensive care unit ,Epigastric Arteries ,Patient Discharge ,Surgery ,030220 oncology & carcinogenesis ,Female ,Patient Safety ,business ,Complication ,Breast reconstruction ,Body mass index ,Perforator Flap - Abstract
Background As deep inferior epigastric artery perforator (DIEP) flaps have gained popularity in breast reconstruction, the postoperative care of these patients, including the appropriate hospital length-of-stay and the need for intensive care unit (ICU) admission, has become a topic of debate. At our institution, we have adopted a pathway that aims for discharge on postoperative day 3, utilizing continuous tissue oximetry without ICU admission. This study aims to evaluate outcomes with this pathway to assess its safety and feasibility in clinical practice. Methods A retrospective review was performed of patients undergoing DIEP flap breast reconstruction between January 2013 and August 2014. Data of interest included patient demographics and medical history as well as complication rates and date of hospital discharge. Results In total, 153 patients were identified undergoing 239 DIEP flaps. The mean age was 50 years (standard deviation [SD] = 10.2) and body mass index (BMI) 29.4 kg/m2 (SD = 5.2). Over the study period, the flap failure rate was 1.3% and reoperation rate 3.9%. Seventy-one percent of patients were discharged on postoperative day 3. Nine patients required hospitalization beyond 5 days. Theoretical cost savings from avoiding ICU admissions were $1,053 per patient. Conclusion A pathway aiming for hospital discharge on postoperative day 3 without ICU admission following DIEP flap breast reconstruction can be feasibly implemented with an acceptable reoperation and flap failure rate.
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- 2020
14. Risk and Reward: Public Perception of Gluteal Fat Grafting Safety
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Halley Darrach, Waverley He, Helen Xun, Darya Fadavi, Pragna N. Shetty, Franca Kraenzlin, and Justin M. Sacks
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Adult ,medicine.medical_specialty ,030230 surgery ,Logistic regression ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Reward ,Informed consent ,medicine ,Humans ,business.industry ,Mortality rate ,Evidence-based medicine ,equipment and supplies ,medicine.disease ,Body Dysmorphic Disorders ,Otorhinolaryngology ,Adipose Tissue ,Family medicine ,Body dysmorphic disorder ,Survey data collection ,Surgery ,Female ,Perception ,business ,Brazil ,Patient education - Abstract
This study aims to understand how sociodemographic factors influence perceptions of “Brazilian Butt Lift” (BBL), the cosmetic procedure with the highest reported mortality rate, among adult women. We also investigate whether education about risks changes willingness to receive this procedure. A Qualtrics© survey including education about BBL was administered on Amazon Mechanical Turk, with inclusion criteria of female sex. Survey data from 489 female participants were included. 78.1% of participants found the BBL mortality rate to be higher than expected. 70.1% of the original 177 willing or neutral participants became unwilling to undergo a BBL after education. Multivariate logistic regression indicated that individuals who were more willing to undergo BBL after education were individuals who have a diagnosis of body dysmorphic disorder (OR 60.5, p = 0.02) or have an acquaintance who received a BBL (OR 230.2, p
- Published
- 2020
15. A molecular model for LINC complex regulation: activation of SUN2 for KASH binding
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Uyen T. Vu, Darya Fadavi, Zeinab Jahed, Akshay Rathish, Mohammad R. K. Mofrad, Samuel C. J. Kim, Wei Feng, Huimin Ke, and Weaver, Valerie Marie
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Models, Molecular ,0301 basic medicine ,Protein Structure ,Secondary ,Protein family ,Molecular model ,Nuclear Envelope ,1.1 Normal biological development and functioning ,LINC complex ,Telomere-Binding Proteins ,Trimer ,Plasma protein binding ,Molecular Dynamics Simulation ,Biology ,Medical and Health Sciences ,Models, Biological ,Protein Structure, Secondary ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Protein structure ,Underpinning research ,Models ,Animals ,Amino Acid Sequence ,Nuclear protein ,Molecular Biology ,Ions ,Nuclear Functions ,Intracellular Signaling Peptides and Proteins ,Molecular ,Membrane Proteins ,Nuclear Proteins ,Articles ,Cell Biology ,Biological Sciences ,Biological ,030104 developmental biology ,Multiprotein Complexes ,Mutation ,Biophysics ,Calcium ,Generic health relevance ,Protein Multimerization ,SUN domain ,030217 neurology & neurosurgery ,Developmental Biology ,Protein Binding - Abstract
Linkers of the nucleoskeleton and cytoskeleton are key molecular complexes that span the nuclear envelope (NE) and provide a direct linkage between the nucleoskeleton and cytoskeleton. Two major components of these complexes are members of the SUN and KASH protein families that interact in the perinuclear space to allow the transmission of mechanochemical signals across the NE. Structural details of the mammalian SUN domain protein SUN2 have established that SUN2 must form a trimer to bind to KASH, and that this trimerization is mediated through two predicted coiled-coil regions of the protein, CC1 and CC2, which precede the SUN domain. Recent crystallographic data suggest that CC2-SUN formed an unexpected autoinhibited monomer unable to bind to KASH. These structural insights raise the question of how full-length SUN2 transitions from a monomer to a trimer inside the NE. In this study we used a computational approach to model a fragment of SUN2 containing CC1, CC2, and the SUN domain. We observed the dynamics of these modeled structures using ∼1 μs molecular dynamics simulations and showed that the interplay between CC1 and CC2 may be sufficient for the release of CC2-SUN2 from its autoinhibited state. Additionally, using our models and gel filtration analysis, we show the involvement of an E452 residue on CC1 in the monomer–trimer transition of SUN2. Intriguingly, mutations in this residue have been seen in muscular dystrophy–associated SUN2 variants. Finally, we propose a Ca2+-dependent monomer–trimer transition of SUN2.
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- 2018
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16. Stromal vascular fraction: A regenerative reality? Part 2: Mechanisms of regenerative action
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Jimmy A. Guo, Andrew Nguyen, Darya Fadavi, Derek A. Banyard, Keyianoosh Z. Paydar, Garrett A. Wirth, Jason D. Toranto, Gregory R. D. Evans, and Alan D. Widgerow
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0301 basic medicine ,medicine.medical_specialty ,Pathology ,Stromal cell ,Angiogenesis ,Adipose tissue ,Regenerative Medicine ,Regenerative medicine ,03 medical and health sciences ,Tissue engineering ,medicine ,Humans ,Tissue Engineering ,business.industry ,Regeneration (biology) ,Mesenchymal stem cell ,Cell Differentiation ,Mesenchymal Stem Cells ,Stromal vascular fraction ,Surgery ,Cell biology ,030104 developmental biology ,Adipose Tissue ,Stromal Cells ,business - Abstract
Adipose tissue is a rich source of cells with emerging promise for tissue engineering and regenerative medicine. The stromal vascular fraction (SVF), in particular, is an eclectic composite of cells with progenitor activity that includes preadipocytes, mesenchymal stem cells, pericytes, endothelial cells, and macrophages. SVF has enormous potential for therapeutic application and is being investigated for multiple clinical indications including lipotransfer, diabetes-related complications, nerve regeneration, burn wounds and numerous others. In Part 2 of our review, we explore the basic science behind the regenerative success of the SVF and discuss significant mechanisms that are at play. The existing literature suggests that angiogenesis, immunomodulation, differentiation, and extracellular matrix secretion are the main avenues through which regeneration and healing is achieved by the stromal vascular fraction.
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- 2016
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17. Stromal vascular fraction: A regenerative reality? Part 1: Current concepts and review of the literature
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Garrett A. Wirth, Jimmy A. Guo, Jason D. Toranto, Darya Fadavi, Alan D. Widgerow, Keyianoosh Z. Paydar, Gregory R. D. Evans, Andrew Nguyen, and Derek A. Banyard
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0301 basic medicine ,medicine.medical_specialty ,Stromal cell ,Adipose tissue macrophages ,Cell- and Tissue-Based Therapy ,Adipose tissue ,Connective tissue ,Cell therapy ,03 medical and health sciences ,0302 clinical medicine ,Adipocytes ,medicine ,Humans ,Progenitor cell ,Cells, Cultured ,business.industry ,Mesenchymal stem cell ,Cell Differentiation ,Stromal vascular fraction ,Surgery ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Immunology ,Cancer research ,Endothelium, Vascular ,Stromal Cells ,business - Abstract
Stromal Vascular Fraction (SVF) is a heterogeneous collection of cells contained within adipose tissue that is traditionally isolated using enzymes such as collagenase. With the removal of adipose cells, connective tissue and blood from lipoaspirate, comes the SVF, a mix including mesenchymal stem cells, endothelial precursor cells, T regulatory cells, macrophages, smooth muscle cells, pericytes and preadipocytes. In part 1 of our 2-part series, we review the literature with regards to the intensifying interest that has shifted toward this mixture of cells, particularly due to its component synergy and translational potential. Trials assessing the regenerative potential of cultured Adipose Derived Stem Cells (ADSCs) and SVF demonstrate that SVF is comparably effective in treating conditions ranging from radiation injuries, burn wounds and diabetes, amongst others. Aside from their use in chronic conditions, SVF enrichment of fat grafts has proven a major advance in maintaining fat graft volume and viability. Many SVF studies are currently in preclinical phases or are moving to human trials. Overall, regenerative cell therapy based on SVF is at an early investigative stage but its potential for clinical application is enormous.
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- 2016
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18. Large Scale Advanced Data Analytics on Skin Conditions from Genotype to Phenotype
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Dexter Hadley, Darya Fadavi, Imad Aljabban, Laraib Safeer, Jihad Aljabban, and Maryam Panahiazar
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lcsh:T58.5-58.64 ,Computer Networks and Communications ,business.industry ,lcsh:Information technology ,Communication ,Meta Analysis ,Actinic keratosis ,Big data ,Novelty ,Data Analytics ,Computational biology ,Biology ,Omics ,medicine.disease ,Phenotype ,Large Scale ,Human-Computer Interaction ,Genotype-phenotype distinction ,Meta-analysis ,medicine ,medicine.symptom ,business ,Postinflammatory hyperpigmentation - Abstract
A crucial factor in Big Data is to take advantage of available data and use that for new discovery or hypothesis generation. In this study, we analyzed Large-scale data from the literature to OMICS, such as the genome, proteome or metabolome, respectively, for skin conditions. Skin acts as a natural barrier to the world around us and protects our body from different conditions, viruses, and bacteria, and plays a big part in appearance. We have included Hyperpigmentation, Postinflammatory Hyperpigmentation, Melasma, Rosacea, Actinic keratosis, and Pigmentation in this study. These conditions have been selected based on reasoning of big scale UCSF patient data of 527,273 females from 2011 to 2017, and related publications from 2000 to 2017 regarding skin conditions. The selected conditions have been confirmed with experts in the field from different research centers and hospitals. We proposed a novel framework for large-scale available public data to find the common genotypes and phenotypes of different skin conditions. The outcome of this study based on Advance Data Analytics provides information on skin conditions and their treatments to the research community and introduces new hypotheses for possible genotype and phenotype targets. The novelty of this work is a meta-analysis of different features on different skin conditions. Instead of looking at individual conditions with one or two features, which is how most of the previous works are conducted, we looked at several conditions with different features to find the common factors between them. Our hypothesis is that by finding the overlap in genotype and phenotype between different skin conditions, we can suggest using a drug that is recommended in one condition, for treatment in the other condition which has similar genes or other common phenotypes. We identified common genes between these skin conditions and were able to find common areas for targeting between conditions, such as common drugs. Our work has implications for discovery and new hypotheses to improve health quality, and is geared towards making Big Data useful.
- Published
- 2018
19. Molecular Insights into the Mechanisms of SUN1 Oligomerization in the Nuclear Envelope
- Author
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G. W. Gant Luxton, Darya Fadavi, Uyen T. Vu, Mohammad R. K. Mofrad, Ehsaneddin Asgari, and Zeinab Jahed
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0301 basic medicine ,Protein Structure ,Nuclear Envelope ,LINC complex ,1.1 Normal biological development and functioning ,Protein domain ,Biophysics ,Sequence (biology) ,Computational biology ,Molecular Dynamics Simulation ,Quaternary ,03 medical and health sciences ,Molecular dynamics ,0302 clinical medicine ,Protein structure ,Protein Domains ,Underpinning research ,Humans ,Homology modeling ,Amino Acid Sequence ,Protein Structure, Quaternary ,Peptide sequence ,Chemistry ,Intracellular Signaling Peptides and Proteins ,Membrane Proteins ,Nuclear Proteins ,Biological Sciences ,030104 developmental biology ,Cell Biophysics ,Physical Sciences ,Chemical Sciences ,Generic health relevance ,Protein Multimerization ,Microtubule-Associated Proteins ,030217 neurology & neurosurgery ,Binding domain - Abstract
The LINC complex is found in a wide variety of organisms and is formed by the transluminal interaction between outer- and inner-nuclear-membrane KASH and SUN proteins, respectively. Most extensively studied are SUN1 and SUN2 proteins, which are widely expressed in mammals. Although SUN1 and SUN2 play functionally redundant roles in several cellular processes, more recent studies have revealed diverse and distinct functions for SUN1. While several recent in vitro structural studies have revealed the molecular details of various fragments of SUN2, no such structural information is available for SUN1. Herein, we conduct a systematic analysis of the molecular relationships between SUN1 and SUN2, highlighting key similarities and differences that could lead to clues into their distinct functions. We use a wide range of computational tools, including multiple sequence alignments, homology modeling, molecular docking, and molecular dynamic simulations, to predict structural differences between SUN1 and SUN2, with the goal of understanding the molecular mechanisms underlying SUN1 oligomerization in the nuclear envelope. Our simulations suggest that the structural model of SUN1 is stable in a trimeric state and that SUN1 trimers can associate through their SUN domains to form lateral complexes. We also ask whether SUN1 could adopt an inactive monomeric conformation as seen in SUN2. Our results imply that the KASH binding domain of SUN1 is also inhibited in monomeric SUN1 but through weaker interactions than in monomeric SUN2.
- Published
- 2018
20. Abstract 98: Hospital Volume and Insurance Status Impact Complication Rates After Head & Neck Cancer Reconstruction
- Author
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Justin M. Sacks, Oluseyi Aliu, Darya Fadavi, Leila Musavi, and Waverley He
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medicine.medical_specialty ,Hospital volume ,PSRC 2019 Abstract Supplement ,business.industry ,Insurance status ,General surgery ,medicine ,lcsh:Surgery ,Surgery ,lcsh:RD1-811 ,Head neck cancer ,business ,Complication - Published
- 2019
- Full Text
- View/download PDF
21. Length of KASH Domains Affect Linc Complex Functions
- Author
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Zeinab Jahed, Akshay Rathish, Venecia A. Valdez, Mohammad R. K. Mofrad, Darya Fadavi, Vyom Thakkar, Uyen T. Vu, Hongyan Hao, and Daniel A. Starr
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Physics ,KASH domains ,LINC complex ,Biophysics ,Affect (psychology) ,Cell biology - Published
- 2019
- Full Text
- View/download PDF
22. Is SUN2 Autoinhibited?
- Author
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Darya Fadavi, Uyen T. Vu, Mohammad R. K. Mofrad, Samuel C. J. Kim, and Zeinab Jahed
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Biophysics - Published
- 2018
- Full Text
- View/download PDF
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