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Following several small-scale benthic disturbance experiments, an industrial polymetallic nodule collector trial was conducted by the company Global Sea mineral Resources (GSR) in their exploration contract area in the Clarion-Clipperton Zone using the pre-prototype vehicle Patania II (PATII). In this study, meiofaunal (i.e., nematode abundance, ASV diversity and genus composition) and environmental (i.e., grain size, total organic carbon/total nitrogen and pigment) properties are compared between disturbance categories (i.e., Pre-impact, Collector Impact and Plume Impact). One week after the trial, proxies for food availability within the Collector Impact sediments were altered with lower total organic carbon (TOC) and pigment (i.e., CPE: sum of Chlorophyll a and phaeopigments) values. Albeit not significant, the observed decrease of nematode abundance and ASV diversity, further indicate the consequences of the removal of the ecologically important surface sediment layer within the PATII tracks. Next to sediment removal, exposed sediments were modified in different ways (e.g., central strips, parallel caterpillar imprints with alternating bands of depressions/ripples and interface patches) and were also subject to heavy collector-induced sediment blanketing. We propose that these cumulative impacts have led to intricate seabed modifications with various levels of disturbance intensity which resulted in the high meiofaunal variability observed. Adjacent nodule-rich areas (i.e., Plume Impact) received considerable levels of sediment deposition (2-3 cm) and were defined by significantly lower food sources (CPE, TOC, carbon to nitrogen ratio) and an observation of meiofaunal enrichment (i.e., higher average nematode abundance and ASV diversity; although statistically non-significant), but mechanisms behind these ecological changes (e.g., suspended material-surface fluxes, passive dispersal of fauna in the plume vs. active upward migration and “viability” of redeposited fauna) remain unresolved. We conclude that complex benthic pressure-response relationships associated with the PATII trial, combined with the high degree of natural spatial and temporal variability in abyssal meiofaunal communities and sedimentary parameters, complicates the quantitative assessment of deep-sea mining associated disturbances.

Meiofaunal communities are dominated by free-living nematodes and harpacticoid copepods. Most of the studies defining the environmental drivers that influence meiofauna focus on these profuse groups. The ‘rare’ meiofaunal organisms (densities

Ocean Census is a new Large-Scale Strategic Science Mission aimed at accelerating the discovery and description of marine species. This mission addresses the knowledge gap of the diversity and distribution of marine life whereby of an estimated 1 million to 2 million species of marine life between 75% to 90% remain undescribed to date. Without improved knowledge of marine biodiversity, tackling the decline and eventual extinction of many marine species will not be possible. The marine biota has evolved over 4 billion years and includes many branches of the tree of life that do not exist on land or in freshwater. Understanding what is in the ocean and where it lives is fundamental science, which is required to understand how the ocean works, the direct and indirect benefits it provides to society and how human impacts can be reduced and managed to ensure marine ecosystems remain healthy. We describe a strategy to accelerate the rate of ocean species discovery by: 1) employing consistent standards for digitisation of species data to broaden access to biodiversity knowledge and enabling cybertaxonomy; 2) establishing new working practices and adopting advanced technologies to accelerate taxonomy; 3) building the capacity of stakeholders to undertake taxonomic and biodiversity research and capacity development, especially targeted at low- and middle-income countries (LMICs) so they can better assess and manage life in their waters and contribute to global biodiversity knowledge; and 4) increasing observational coverage on dedicated expeditions. Ocean Census, is conceived as a global open network of scientists anchored by Biodiversity Centres in developed countries and LMICs. Through a collaborative approach, including co-production of science with LMICs, and by working with funding partners, Ocean Census will focus and grow current efforts to discover ocean life globally, and permanently transform our ability to document, describe and safeguard marine species.

The fauna of Loricifera along a north-south longitudinal transect following the Atacama Trench was explored. Whereas no loriciferans were collected from the actual trench, the continental slope and surrounding abyssal plains yielded two species of Rugiloricus and two of Pliciloricus. All four species are considered as new to science, but only one of them could be formally described. The new species, Pliciloricus ukupachaensis sp. nov., is closely related with the North Atlantic Pliciloricus leocaudatus, and the two species share different morphological traits, including an enlarged anal field with conspicuous pentagonal and hexagonal fields formed by strong, cuticular ridges. Among other peculiar traits, the new species is characterised by having strongly reduced trichoscalid plates and no double trichoscalids. Comparison with previously published, unidentified specimens suggests that the new species’ distributional range might reach as far as Oregon off the US west coast.

A spatial analysis of the mudflat community of Bourgneuf Bay, France before and after experimental oyster reef removal reveals the role of oyster reefs in influencing microphytobenthos via predator facilitation.

Worldwide legislation emphasizes the need to monitor the health of aquatic ecosystems based on the response of biological quality elements to environmental conditions. A plethora of methodologies have been suggested in this sense. Lately, substantial efforts have led to the exploration of new biological quality elements from the meiobenthic compartment and the implementation of new methodologies based on environmental DNA. Due to their short life-cycles, meiofaunal organisms respond quickly to environmental variability. Changes in population dynamics and species composition are indicative of changes in environmental conditions. Recent pioneer studies have shown that biotic indices based on benthic foraminifera and nematodes can efficiently assess the health of transitional and marine ecosystems. The use of environmental DNA, as well as other fingerprinting techniques, is increasing in biomonitoring studies, and further calibrations are still needed to implement this method. The published papers in this Special Issue represent well the wide applicability of meiobenthic groups, i.e., benthic foraminifera and nematodes, allowing us to address a key ecological knowledge gap in order to convince decision makers and stakeholders about the advantage of introducing new biological quality elements in environmental biomonitoring.

Hybrid conferences are in-person events that have an online component. This type of meeting format was rare before the COVID-19 pandemic, but started to become more common recently given the asynchronous global progression of the pandemic, the uneven access to vaccines and different travel regulations among countries that led to a large proportion of participants being unable to attend conferences in person. Here we report the organization of a middle-sized (581 participants: 159 onsite, 422 online) international hybrid conference that took place in France in September 2021. We highlight particular organizational challenges inherent to this relatively new type of meeting format. Furthermore, we surveyed both in-person and online participants to better understand their conference experience and to propose improvements based on the feedback received. Finally, we compare the advantages and disadvantages of three types of conferences (onsite-only, online-only and hybrid) and suggest that hybrid events should be favored in the future because they offer the most flexibility to participants. We conclude by proposing suggestions and ways forward to maximize accessibility and inclusivity of hybrid conferences. Our study brings novel insights on the challenges and opportunities created by hybrid conferences, by reporting not only the organizing committee experience but also by considering the participants’ perspective.

Abstract Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories and surveys, yet requires standardized sampling approaches and careful choice of environmental substrate. Here, we aimed to optimize the genetic assessment of prokaryote (16S), protistan (18S V4), and metazoan (18S V1–V2, COI) communities, by evaluating sampling strategies for sediment and aboveground water, deployed simultaneously at one deep-sea site. For sediment, while size-class sorting through sieving had no significant effect on total detected alpha diversity and resolved similar taxonomic compositions at the phylum level for all markers studied, it effectively increased the detection of meiofauna phyla. For water, large volumes obtained from an in situ pump (~ 6000 L) detected significantly more metazoan diversity than 7.5 L collected in sampling boxes. However, the pump being limited by larger mesh sizes (> 20 µm), only captured a fraction of microbial diversity, while sampling boxes allowed access to the pico- and nanoplankton. More importantly, communities characterized by aboveground water samples significantly differed from those characterized by sediment, whatever volume used, and both sample types only shared between 3 and 8% of molecular units. Together, these results underline that sediment sieving may be recommended when targeting metazoans, and aboveground water does not represent an alternative to sediment sampling for inventories of benthic diversity.

Maerl beds, particularly those of Brittany, are important, structurally complex biogenic coastal habitats that form a unique ecosystem with high benthic biodiversity. Although they are relatively well studied throughout Europe, several faunal groups of maerl beds, such as those belonging to the meiofauna, have received little attention. We investigated the meiofaunal abundance, distribution and community structure, with a focus on nematode biomass and diversity, in a maerl area in the Bay of Brest, Brittany, compared with that on a sandy beach (Anse de Dinan, Brittany). Meiofauna was five times more abundant on the maerl bed than on the sandy beach, and 1.5 times more diversified (12 vs. 8 taxa, respectively). Nematode diversity was more than three times higher on the maerl bed than on the sandy beach and showed a distinctive nematode community that was absent from the sandy beach. Maerl beds create more heterogeneous microhabitats and promote a higher diversification of meiofauna and nematode communities than sandy beaches.

Deep-sea trenches are one of the last frontiers for deep-sea exploration and represent a large reservoir of undiscovered biodiversity. This applies in particular to organisms belonging to smaller-size classes, such as meiofauna. Among different meiofauna taxa, kinorhynchs represent a large gap in our knowledge about global marine biodiversity in general, but primarily in extreme deep-sea environments. Out of the more than 300 known mud dragon species, only a single species has ever been described from hadal depths (> 6000 m), i.e., Echinoderes ultraabyssalis from the Kuril-Kamchatka Trench. The results presented in this paper are based on material collected during a research expedition in 2018 investigating the Atacama Trench environment. We provide a first overview and comparison of the diversity and abundance of mud dragons in the Atacama Trench, the adjacent abyssal plain and continental slope off Chile. The study revealed six species of Echinoderes. Of these, Echinoderes mamaqucha sp. nov. is described as a new species and morphological data of three undescribed species are given. Because of the low number of available specimens, we provide only a brief description of these three species and comparison with their morphologically closest congeners, but formal descriptions are not given. Moreover, Echinoderes juliae and Echinoderes pterus were also recovered. Echinoderes juliae was described from the abyssal plain off Oregon and along the continental rise off California, at 2702 to 3679 m depth. Echinoderes pterus is known from the high Arctic, the North Atlantic, and the Mediterranean Sea, and has also been reported to show a wide bathymetric distribution, from 675 to 4403 m. Interestingly, E. mamaqucha sp. nov. dominated at the trench stations and it reached its highest abundance at the deepest station, at 8085 m water depth. The only other single individual that was found in the Atacama Trench was Echinoderes sp.1. The remaining four species were all found at the abyssal and slope stations. The obtained results seem to confirm previous hypotheses about geographic isolation of deep-sea trenches and relatively low connectivity with other habitats, reflected by limited diversity of sediment dwelling fauna, particularly in the deepest parts of trenches.

Abstract Background Nematodes are an important component of deep-sea hydrothermal vent communities, but only few nematode species are able to cope to the harsh conditions of the most active vent sites. The genus Oncholaimus is known to tolerate extreme geothermal conditions and high sulphide concentrations in shallow water hydrothermal vents, but it was only occasionally reported in deep-sea vents. In this study, we performed morphological, genetic and ecological investigations (including feeding strategies) on an abundant species of Oncholaimus recently discovered at Lucky strike vent field on the Mid-Atlantic Ridge at 1700 m water depth. Results We described this species as Oncholaimus dyvae sp. nov.. This new species differs from all other members of the genus by the combination of the following characters: body length (up to 9 mm), the presence of a long spicule (79 μm) with a distally pointed end, a complex pericloacal setal ornamentation with one precloacal papilla surrounded by short spines, and a body cuticule with very fine striation shortly posterior to the amphid opening. Overall, O. dyvae sp. nov. abundance increased with increasing temperature and vent emissions. Carbon isotopic ratios suggest that this species could consume both thiotroph and methanotrophic producers. Furthermore sulfur-oxidizing bacteria related to Epsilonproteobacteria and Gammaproteobacteria were detected in the cuticle, in the digestive cavity and in the intestine of O. dyvae sp. nov. suggesting a potential symbiotic association. Conclusions This study improves our understanding of vent biology and ecology, revealing a new nematode species able to adapt and be very abundant in active vent areas due to their association with chemosynthetic micro-organisms. Faced by the rapid increase of anthropogenic pressure to access mineral resources in the deep sea, hydrothermal vents are particularly susceptible to be impacted by exploitation of seafloor massive sulfide deposits. It is necessary to document and understand vent species able to flourish in these peculiar ecosystems.

Cold seeps occur globally in areas where gases escape from the seafloor, occasionally resulting in the formation of topographic depressions (pockmarks), characterised by unique physicochemical conditions such as anoxic and sulphuric sediments. Free-living marine nematodes tend to dominate the meiofaunal component in such environments, often occurring at extremely high densities and low richness; the mechanisms defining community assembly in areas of fluid seepage, however, have received little attention. Here we focus on a low-activity pockmark at 789 m in the Mozambique Channel (MC). We assessed the diversity, co-occurrence patterns and phylogenetic community structure of nematodes at this bathyal site to that of a nearby reference area as well as abyssal sediments using metabarcoding. In addition, we compared our molecularly-derived diversity estimates to replicate samples identified morphologically. Overall, nematode Amplicon Sequence Variants (ASVs) and generic richness were similar between Pockmark and Abyssal sediments, but lower compared to the Reference area. Although more than half the genera were shared, over 80% of ASVs were unique within each area and even within each replicate core. Even though both methodologies differentiated the Pockmark from the Reference and Abyssal sites, there was little overlap between the molecularly and morphologically identified taxa, highlighting the deficit of reference sequences for deep-sea nematodes in public databases. Phylogenetic community structure at higher taxonomic levels was clustered and did not differ between the three areas yet analysis within three shared and dominant genera (Acantholaimus, Desmoscolex, Halalaimus), revealed randomness with respect to phylogeny as well as co-occurrence which was exclusive to the Pockmark area. These patterns point to the influence of neutral dynamics at this locality resulting from the stochastic sampling of early colonizing taxa, the successional stage at sampling and/or the functional redundancy within the investigated genera.

Cold seep areas are extremely reduced habitats with spatiotemporal variation of hydrocarbon-rich fluid seepage, low oxygen levels, and great habitat heterogeneity. Cold seeps can create circular to ellipsoid shallow depressions on the seafloor called pockmarks. We investigated two selected pockmarks, characterized by different gas emission, and two sites outside these geological structures at the Mozambique Channel to understand whether and how their environmental conditions affect the kinorhynch fauna in terms of density, richness, and community composition. A total of 11 species have been found living in the studied area, of which three are new species: Fissuroderes cthulhu sp. nov., Fujuriphyes dagon sp. nov., and Fujuriphyes hydra sp. nov. Densities outside the pockmarks are low and regularly decrease from the upper sediment layers, whereas inside the pockmarks, density reaches its highest value at layer 1–2 cm, strongly decreasing along the vertical profile from this depth. Areas under pockmark influence and locations outside pockmarks are similar in terms of species richness, but kinorhynchs showed a significant remarkable higher density at the pockmark sites. Additionally, species composition changes between habitats (inside and outside pockmarks) and between the two sampled pockmarks, with most of the species restricted to one of the studied habitats, except for Condyloderes sp. and Echinoderes unispinosus present both outside and inside the pockmarks. Echinoderes hviidarum, E. unispinosus, and Fi. cthulhu sp. nov., present at sites with gas emission, do not only survive under the specific pockmark conditions (characterized by hydrogen sulfide toxicity, methane high concentration, and low availability of dissolved oxygen) but even profit from a habitat with a likely lower competition for space and resources, flourishing and enhancing the density, most likely through the replacement with specialized species. Contrarily, species that only appear outside the pockmarks do not seem to cope with the presence of hydrogen sulfide and methane. Therefore, environmental factors linked to gas emissions have a major role driving the kinorhynch community composition.

Shallow-water hydrothermal vents are widespread, especially in the Mediterranean Sea, owing to the active volcanism of the area. Apart free microbial communities’ investigations, few biological studies have been leaded yet. Investigations of microbial communities associated with Nematoda, an ecologically important group in sediments, can help to improve our overall understanding of these ecosystems. We used a multidisciplinary-approach, based on microscopic observations (scanning electron microscopy: SEM and Fluorescence In Situ Hybridization: FISH) coupled with a molecular diversity analysis using metabarcoding, based on the 16S rRNA gene (V3-V4 region), to characterize the bacterial community of a free-living marine nematode and its environment, the shallow hydrothermal vent near Naples (Italy). Observations of living bacteria in the intestine (FISH), molecular and phylogenetic analyses showed that this species of nematode harbors its own bacterial community, distinct from the surrounding sediment and water. Metabarcoding results revealed the specific microbiomes of the sediment from three sites of this hydrothermal area to be composed mainly of sulfur oxidizing and reducing related bacteria.

The abyssal seafloor covers more than 50% of planet Earth and is a large reservoir of still mostly undescribed biodiversity. It is increasingly targeted by resource-extraction industries and yet is drastically understudied. In such remote and hard-to-access ecosystems, environmental DNA (eDNA) metabarcoding is a useful and efficient tool for studying biodiversity and implementing environmental impact assessments. Yet, eDNA analysis outcomes may be biased toward describing past rather than present communities as sediments contain both contemporary and ancient DNA. Using commercially available kits, we investigated the impacts of five molecular processing methods on eDNA metabarcoding biodiversity inventories targeting prokaryotes (16S), unicellular eukaryotes (18S-V4), and metazoans (18S-V1, COI). As the size distribution of ancient DNA is skewed toward small fragments, we evaluated the effect of removing short DNA fragments via size selection and ethanol reconcentration using eDNA extracted from 10 g of sediment at five deep-sea sites. We also compare communities revealed by eDNA and environmental RNA (eRNA) co-extracted from ∼2 g of sediment at the same sites. Results show that removing short DNA fragments does not affect alpha and beta diversity estimates in any of the biological compartments investigated. Results also confirm doubts regarding the possibility to better describe live communities using eRNA. With ribosomal loci, eRNA, while resolving similar spatial patterns than co-extracted eDNA, resulted in significantly higher richness estimates, supporting hypotheses of increased persistence of ribosomal RNA (rRNA) in the environment and unmeasured bias due to overabundance of rRNA and RNA release. With the mitochondrial locus, eRNA detected lower metazoan richness and resolved fewer spatial patterns than co-extracted eDNA, reflecting high messenger RNA lability. Results also highlight the importance of using large amounts of sediment (≥10 g) for accurately surveying eukaryotic diversity. We conclude that eDNA should be favored over eRNA for logistically realistic, repeatable, and reliable surveys and confirm that large sediment samples (≥10 g) deliver more complete and accurate assessments of benthic eukaryotic biodiversity and that increasing the number of biological rather than technical replicates is important to infer robust ecological patterns.

Hydrothermal venting is rather prevalent in many marine areas around the world, and marine shallow vents are relatively abundant in the Mediterranean Sea, especially around Italy. However, investigations focusing on the characterization of meiofaunal organisms inhabiting shallow vent sediments are still scant compared to that on macrofauna. In the present study, we investigated the meiobenthic assemblages and nematode diversity inhabiting the Secca delle Fumose (SdF), a shallow water vent area located in the Gulf of Naples (Italy). In this area, characterized by a rapid change in the environmental conditions on a relative small spatial scale (i.e., 100 m), we selected four sampling sites: one diffusive emission site (H); one geyser site (G) and two inactive sites (CN, CS). Total meiofauna abundance did not vary significantly between active and inactive sites and between surface and deeper sediment layers due to a high inter-replicate variability, suggesting a pronounced spatial-scale patchiness in distribution of meiofauna. Nematofauna at site H presented the typical features of deep-sea vents with low structural and functional diversity, high biomass and dominance of few genera (i.e., Oncholaimus; Daptonema) while from site G we reported diversity values comparable to that of the inactive sites. We hypothesized that site G presented a condition of “intermediate disturbance” that could maintain a high nematode diversity. Environmental features such as sediment temperature, pH, total organic carbon and interstitial waters ions were found to be key factors influencing patterns of meiofauna and nematofauna assemblages at SdF. Even though the general theory is that nematodes inhabiting shallow vent areas include a subset of species that live in background sediments, this was not the case for SdF vent area. Due to a marked change in nematode composition between all sites and to the presence of many exclusive species, every single investigated site was characterized by a distinct nematofauna reflecting the high spatial heterogeneity of SdF.

The risk assessment of seafloor massive sulfide (SMS) mining on meiobenthic organisms, specifically on soft-sediment meiofauna, is impeded by a lack of knowledge on the biology and ecology of these communities. In this study, we investigated sediment samples taken in proximity of active vents at Trans-Atlantic Geotraverse (TAG) and Snake Pit, two hydrothermal vent fields of the Mid-Atlantic Ridge, in order to explore metazoan meiofauna, particularly nematode community, and its relation to organic carbon, total nitrogen, total sulfur, and dissolved oxygen. Organic carbon and nitrogen contents were low at both sites. High concentrations of total sulfur and low oxygen penetration were found at Snake Pit compared to TAG. Snake Pit showed approximately four times higher meiofauna and nematode density compared to TAG, as well as a dissimilar nematode community composition. We hypothesize that high sulfur concentrations at Snake Pit may support high microbial growth, which represents one of the main food source for nematodes. Moreover, TAG nematode community mostly consisted of persisters (K-strategists), whereas Snake Pit one was composed by both persisters (Desmoscolecidae family) and colonizers (r-strategists Metalinhomoeus and Halomonhystera), whose presence can be facilitated by the bioturbation effect of polychaetes observed on the sediment surface. Therefore, food availability, geochemical settings, and biotic interactions seem to drive the local meiofauna and nematode community. Our study also draws attention to the opportunity of including meiofauna and specifically nematodes in impact studies conducted in this area in order to assess and monitor the impact of SMS mining.

The occurrence of hydrothermal vent ecosystems at Secca delle Fumose, Pozzuoli Bay (Gulf of Naples), represented an opportunity to study the benthic assemblages under the thermal stress of hydrothermal emissions in a very shallow environment (9–14 m water depth). In autumn 2016, the macrobenthic community was sampled by scuba divers at four sites located in the Baia Underwater Archeological Park. Two sites were characterized by vent emissions (one with white bacterial mat scattered on the bottom and one with a yellow substrate around a geyser opening) and two at about 100 m away, used as control. Sediment and interstitial water environmental variables were measured to determine their influence on the structure of macrobenthic assemblages. A total of 1,954 macrofaunal individuals was found, characterized by great differences in abundance and species richness among sites. This pattern was correlated to the dominance of a particular set of variables that drastically change in a very small spatial scale, from one site to another. The control sites, characterized by the highest percentage of gravel in the sediments (19.67 ± 2.6%) and normal level of major ions such as Ca2+, K+, and Mg2+ in the interstitial waters, showed the highest values of sinecological indices. The “white” hydrothermal site exhibited the lowest species richness, abundance and species diversity, influenced by low pH values (∼7.6), high temperatures (∼37.53°C) and by the highest total organic carbon content (TOC 34.78%) in the sediment. The “yellow” hydrothermal site, with sediment TOC equal to 30.03% and interstitial sulfide ions measuring 130.58 ppm, showed higher values of sinecological indices than those recorded at the “white” site. Therefore, taxonomic analysis revealed a high turnover between control and vents sites. This highlights the preference for hydrothermal vents by a few resistant species, such as the gastropod Tritia cuvierii and the polychaete Capitella capitata, confirming the role of the latter species as opportunistic in extreme environments like Secca delle Fumose.

Bioindicators assess the mangroves ecological state according to the types of pressures but they differ with the ecosystem’s specificities. We investigated benthic meiofauna diversity and structure within the low human-impacted mangroves in French Guiana (South America) in response to sediment variables with various distances to the main city. Contaminant’s concentrations differed among the stations, but they remained below toxicity guidelines. Meiofauna structure (Foraminifera, Kinorhyncha, Nematoda) however varied accordingly. Nematode’s identification brought details on the sediment’s quality. The opportunistic genus Paraethmolaimus (Jensen, 1994) strongly correlated to the higher concentrations of Hg, Pb. Anoxic sediments were marked by organic enrichment in pesticides, PCB, and mangrove litter products and dominance of two tolerant genus, Terschellingia (de Man, 1888) and Spirinia (Gerlach, 1963). In each of these two stations, we found many Desmodora individuals (de Man, 1889) with the presence of epibionts highlighting the nematodes decreased fitness and defenses. Oxic sediments without contaminants were distinguished by the sensitive genera Pseudocella (Filipjev, 1927) and a higher diversity of trophic groups. Our results suggested a nematodes sensitivity to low contaminants concentrations. Further investigations at different spatio-temporal scales and levels of deterioration, would be necessary to use of this group as bioindicator of the mangroves’ ecological status.

One of the most important pieces of climate change evidence is ocean acidification. Acidification effects on marine organisms are widely studied, while very little is known regarding its effects on assemblages’ β-diversity. In this framework, shallow hydrothermal vents within a Marine Protected Area (MPA) represent natural ecosystems acting as laboratory set-ups where the continuous carbon dioxide emissions affect assemblages with consequences that can be reasonably comparable to the effects of global water acidification. The aim of the present study is to test the impact of seawater acidification on the β-diversity of soft-bottom assemblages in a shallow vent field located in the Underwater Archeological Park of Baia MPA (Gulf of Naples, Mediterranean Sea). We investigated macro- and meiofauna communities of the ‘Secca delle fumose’ vent system in sites characterized by sulfurous (G) and carbon dioxide emissions (H) that are compared with control/inactive sites (CN and CS). Statistical analyses were performed on the most represented macrobenthic (Mollusca, Polychaeta, and Crustacea), and meiobenthic (Nematoda) taxa. Results show that the lowest synecological values are detected at H and, to a lesser extent, at G. Multivariate analyses show significant differences between hydrothermal vents (G, H) and control/inactive sites; the highest small-scale heterogeneities (measure of β-diversity) are detected at sites H and G and are mainly affected by pH, TOC (Total Organic Carbon), and cations concentrations. Such findings are probably related to acidification effects, since MPA excludes anthropic impacts. In particular, acidification markedly affects β-diversity and an increase in heterogeneity among sample replicates coupled to a decrease in number of taxa is an indicator of redundancy loss and, thus, of resilience capacity. The survival is assured to either tolerant species or those opportunistic taxa that can find good environmental conditions among gravels of sand.

Epibiosis is a common phenomenon in marine systems. In marine environments, ciliates are among the most common organisms adopting an epibiotic habitus and nematodes have been frequently reported as their basibionts. In the present study, we report several new records of peritrich and suctorian ciliates-nematode association worldwide: from a deep-sea pockmark field in the NW Madagascar margin (Indian Ocean), from a shallow vent area in the Gulf of Naples (Mediterranean, Tyrrhenian Sea), in a MPA area in the Gulf of Trieste (Mediterranean, Adriatic Sea), from a mangrove system in French Guiana (South America, Atlantic Ocean), and from the Maldivian Archipelago. In addition, three new species of Suctorea from the Secca delle Fumose shallow vent area (Gulf of Naples) were described: Loricophrya susannae n. sp., Thecacineta fumosae n. sp. and Acinetopsis lynni n. sp. In the light of these new records and data from the existing literature, we discuss the suctorian–nematode epibiosis relationship as a lever to biodiversity.

Deep-sea hydrothermal vent meiofauna have been the focus of recent research and the discovery of an abundant well-adapted free-living marine nematode on the Mid-Atlantic Ridge offers new perspectives on adaptations to the vent environment. Indeed, knowledge concerning biological interactions of microbes and meiofauna in marine extreme environments is scarce, especially for nematodes. In this study, we used microscopic observations [fluorescence in situ hybridization (FISH) and scanning electron microscopy (SEM)] and metabarcoding of 16S rRNA to characterize the bacterial community of the nematode species Oncholaimus dyvae, an overlooked but ecologically important vent organism. Detection of bacteria in the buccal cavity and on the cuticle (SEM) and epibionts in its intestine (FISH) suggests that O. dyvae harbors its own bacterial community. Molecular results and phylogenetic analysis show that bacteria associated with this species are related to symbiotic lineages typical of hydrothermal vent fauna, such as sulfur-oxidizing bacteria related to Epsilonproteobacteria and Gammaproteobacteria. This multi-approach study suggests a potential symbiotic role of bacteria with its nematode host and opens new research perspectives on vent meiofauna.

Antimicrobial peptides (AMPs) are natural antibiotics produced by all living organisms. In metazoans, they act as host defense factors by eliminating microbial pathogens. But they also help to select the colonizing bacterial symbionts while coping with specific environmental challenges. Although many AMPs share common structural characteristics, for example having an overall size between 10−100 amino acids, a net positive charge, a γ-core motif, or a high content of cysteines, they greatly differ in coding sequences as a consequence of multiple parallel evolution in the face of pathogens. The majority of AMPs is specific of certain taxa or even typifying species. This is especially the case of annelids (ringed worms). Even in regions with extreme environmental conditions (polar, hydrothermal, abyssal, polluted, etc.), worms have colonized all habitats on Earth and dominated in biomass most of them while co-occurring with a large number and variety of bacteria. This review surveys the different structures and functions of AMPs that have been so far encountered in annelids and nematodes. It highlights the wide diversity of AMP primary structures and their originality that presumably mimics the highly diverse life styles and ecology of worms. From the unique system that represents marine annelids, we have studied the effect of abiotic pressures on the selection of AMPs and demonstrated the promising sources of antibiotics that they could constitute.

Spatial patterns of species diversity provide information about the mechanisms that regulate biodiversity and are important for setting conservation priorities. Present knowledge of the biogeography of meiofauna in the deep sea is scarce. This investigation focuses on the distribution of the deep-sea nematode genus Manganonema, which is typically extremely rare in deep-sea sediment samples. Forty-four specimens of eight different species of this genus were recorded from different Atlantic and Mediterranean regions. Four out of the eight species encountered are new to science. We report here that this genus is widespread both in the Atlantic and in the Mediterranean Sea. These new findings together with literature information indicate that Manganonema is a cosmopolitan genus, inhabiting a variety of deep-sea habitats and oceans. Manganonema shows the highest diversity at water depths >4,000 m. Our data, therefore, indicate that this is preferentially an abyssal genus that is able, at the same time, to colonize specific habitats at depths shallower than 1,000 m. The analysis of the distribution of the genus Manganonema indicates the presence of large differences in dispersal strategies among different species, ranging from locally endemic to cosmopolitan. Lacking meroplanktonic larvae and having limited dispersal ability due to their small size, it has been hypothesized that nematodes have limited dispersal potential. However, the investigated deep-sea nematodes were present across different oceans covering macro-scale distances. Among the possible explanations (hydrological conditions, geographical and geological pathways, long-term processes, specific historical events), their apparent preference of colonizing highly hydrodynamic systems, could suggest that these infaunal organisms are transported by means of deep-sea benthic storms and turbidity currents over long distances.

Several seamounts are known as 'oases' of high abundances and biomass and hotspots of biodiversity in contrast to the surrounding deep-sea environments. Recent studies have indicated that each single seamount can exhibit a high intricate habitat turnover. Information on alpha and beta diversity of single seamount is needed in order to fully understand seamounts contribution to regional and global biodiversity. However, while most of the seamount research has been focused on summits, studies considering the whole seamount structure are still rather poor. In the present study we analysed abundance, biomass and diversity of nematodes collected in distinct physiographic sites and surrounding sediments of the Condor Seamount (Azores, North-East Atlantic Ocean). Our study revealed higher nematode biomass in the seamount bases and values 10 times higher in the Condor sediments than in the far-field site. Although biodiversity indices did not showed significant differences comparing seamount sites and far-field sites, significant differences were observed in term of nematode composition. The Condor summit harboured a completely different nematode community when compared to the other seamount sites, with a high number of exclusive species and important differences in term of nematode trophic diversity. The oceanographic conditions observed around the Condor Seamount and the associated sediment mixing, together with the high quality of food resources available in seamount base could explain the observed patterns. Our results support the hypothesis that seamounts maintain high biodiversity through heightened beta diversity and showed that not only summits but also seamount bases can support rich benthic community in terms of standing stocks and diversity. Furthermore functional diversity of nematodes strongly depends on environmental conditions link to the local setting and seamount structure. This finding should be considered in future studies on seamounts, especially in view of the potential impacts due to current and future anthropogenic threats.