15 results on '"Daniel S. Bejan"'
Search Results
2. Structure-guided design and characterization of a clickable, covalent PARP16 inhibitor
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Daniel S. Bejan, Sunil Sundalam, Haihong Jin, Rory K. Morgan, Ilsa T. Kirby, Ivan R. Siordia, Barr Tivon, Nir London, and Michael S. Cohen
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General Chemistry - Abstract
PARP16-the sole ER-resident PARP family member-is gaining attention as a potential therapeutic target for cancer treatment. Nevertheless, the precise function of the catalytic activity of PARP16 is poorly understood. This is primarily due to the lack of inhibitors that are selective for PARP16 over other PARP family members. Herein, we describe a structure-guided strategy for generating a selective PARP16 inhibitor by incorporating two selectivity determinants into a phthalazinone pan-PARP inhibitor scaffold: (i) an acrylamide-based inhibitor (DB008) designed to covalently react with a non-conserved cysteine (Cys169, human numbering) in the NAD
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- 2022
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3. Targeted Nanoparticle for Co-delivery of HER2 siRNA and a Taxane to Mirror the Standard Treatment of HER2+ Breast Cancer: Efficacy in Breast Tumor and Brain Metastasis
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Worapol Ngamcherdtrakul, Daniel S. Bejan, William Cruz‐Muñoz, Moataz Reda, Husam Y. Zaidan, Natnaree Siriwon, Suphalak Marshall, Ruijie Wang, Molly A. Nelson, Justin P. C. Rehwaldt, Joe W. Gray, Kullervo Hynynen, and Wassana Yantasee
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Brain Neoplasms ,Receptor, ErbB-2 ,Breast Neoplasms ,General Chemistry ,Trastuzumab ,Article ,Biomaterials ,Mice ,Antineoplastic Combined Chemotherapy Protocols ,Animals ,Humans ,Nanoparticles ,General Materials Science ,Female ,Taxoids ,RNA, Small Interfering ,Biotechnology - Abstract
The first-line treatment of advanced and metastatic human epidermal growth factor receptor type 2 (HER2+) breast cancer requires two HER2-targeting antibodies (trastuzumab and pertuzumab) and a taxane (docetaxel or paclitaxel). The three-drug regimen costs over $320,000 per treatment course, requires a 4-hour infusion time, and has many adverse side effects, while achieving only 18 months of progression-free survival. To replace this regimen, reduce infusion time, and enhance efficacy, a single therapeutic was developed based on trastuzumab-conjugated nanoparticles for co-delivering docetaxel and siRNA against HER2 (siHER2). The optimal nanoconstruct has a hydrodynamic size of 100 nm and specifically treats HER2+ breast cancer cells over organ-derived normal cells. In a drug-resistant orthotopic HER2+ HCC1954 tumor mouse model, the nanoconstruct inhibited tumor growth more effectively than the docetaxel and trastuzumab combination. When coupled with microbubble-assisted focused ultrasound that transiently disrupted the blood brain barrier, the nanoconstruct inhibited the growth of trastuzumab-resistant HER2+ BT474 tumors residing in brains of mice. The nanoconstruct has a favorable safety profile in cells and in mice. Combination therapies have become the cornerstone of cancer treatment and this versatile nanoparticle platform can co-deliver multiple therapeutic types to ensure that they reach the target cells at the same time to realize their synergy.
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- 2021
4. Structurally distinct PARP7 inhibitors provide new insights into the function of PARP7 in regulating nucleic acid-sensing and IFN-β signaling
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Daniel J. Sanderson, Kelsie M. Rodriguez, Daniel S. Bejan, Ninni E. Olafsen, Inga D. Bohn, Ana Kojic, Sunil Sundalam, Ivan R. Siordia, Anna K. Duell, Nancy Deng, Carsten Schultz, Denis M. Grant, Jason Matthews, and Michael S. Cohen
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Pharmacology ,Clinical Biochemistry ,Drug Discovery ,Molecular Medicine ,Molecular Biology ,Biochemistry - Abstract
The mono-ADP-ribosyltransferase PARP7 has emerged as a key negative regulator of cytosolic NA-sensors of the innate immune system. We apply a rational design strategy for converting a pan-PARP inhibitor into a potent selective PARP7 inhibitor (KMR-206). Consistent with studies using the structurally distinct PARP7 inhibitor RBN-2397, co-treatment of mouse embryonic fibroblasts with KMR-206 and NA-sensor ligands synergistically induced the expression of the type I interferon, IFN-β. In mouse colon carcinoma (CT-26) cells, KMR-206 alone induced IFN-β. Both KMR-206 and RBN-2397 increased PARP7 protein levels in CT-26 cells, demonstrating that PARP7's catalytic activity regulates its own protein levels. Curiously, treatment with saturating doses of KMR-206 and RBN-2397 achieved different levels of PARP7 protein, which correlated with the magnitude of type I interferon gene expression. These latter results have important implications for the mechanism of action of PARP7 inhibitors and highlights the usefulness of having structurally distinct chemical probes for the same target.
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- 2023
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5. Allosteric regulation of DNA binding and target residence time drive the cytotoxicity of phthalazinone-based PARP-1 inhibitors
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Moriah R. Arnold, Marie-France Langelier, Jessica Gartrell, Ilsa T. Kirby, Daniel J. Sanderson, Daniel S. Bejan, Justina Šileikytė, Sunil K. Sundalam, Shanthi Nagarajan, Parthiban Marimuthu, Anna K. Duell, Anang A. Shelat, John M. Pascal, and Michael S. Cohen
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Pharmacology ,Clinical Biochemistry ,Drug Discovery ,Molecular Medicine ,Molecular Biology ,Biochemistry - Abstract
Allosteric coupling between the DNA binding site to the NAD
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- 2022
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6. β-Chain Hydrogen-Bonding in 4-Hydroxycoumarins
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Edward J. Valente, Todd S. Carroll, Daniel S. Bejan, and Truc-Vi Duong
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Hydrogen bond ,Intermolecular force ,General Chemistry ,Crystal structure ,010402 general chemistry ,010403 inorganic & nuclear chemistry ,Condensed Matter Physics ,Resonance (chemistry) ,01 natural sciences ,Enol ,0104 chemical sciences ,chemistry.chemical_compound ,Crystallography ,Delocalized electron ,chemistry ,Polar ,Organometallic chemistry - Abstract
In the solid state, some 3-substituted 4-hydroxycoumarins β-ketoester enols form infinite translational hydrogen-bonded β-chains with varying degrees of alignment between adjacent delocalized systems. Nine related structures have been studied. At the strongest, intermolecular associations are polar, purely translation neighbors interact essentially along a 717 pm crystallographic repeat with shortened 260 pm intermolecular O·OH-bond contacts. Four distinctive features characterize these structures: (1) moderately delocalized β-ketoester enol structures, (2) translational misalignment angles between oxygen donors and acceptors less than 10°, (3) buttressing intermolecular C–H·O contacts co-planar with and near the intermolecular O–H·O interactions, and (4) fully extended ketoester enol hydrogen-bond (ap-anti-anti) geometries. For non-polar β-chains in related coumarin systems, β-ketoester enol alignments are typically poorer, involve hydrogen-bonding between glide relatives, ap-syn-(anti) geometry, and the intermolecular O·OH-bond contacts are longer. Substituted 4-hydroxycoumarins related to phenprocoumon can form well-aligned polar translational β-chains between enolones showing resonance assisted Hydrogen-bonding and a 717 pm repeat along a crystallographic axis.
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- 2019
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7. In situ tumor vaccination with nanoparticle co-delivering CpG and STAT3 siRNA to effectively induce whole-body antitumor immune response
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Ngoc Ha Hoang, Amanda W. Lund, Wassana Yantasee, Ruijie Wang, Shiuh Wen Luoh, Gordon B. Mills, Sancy A. Leachman, Worapol Ngamcherdtrakul, Joe W. Gray, Molly A. Nelson, Husam Y. Zaidan, Daniel S. Bejan, Moataz Reda, and Ryan S. Lane
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Materials science ,medicine.medical_treatment ,Intratumoral Therapy ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Article ,Mice ,Immune system ,Cancer immunotherapy ,medicine ,Animals ,General Materials Science ,RNA, Small Interfering ,Mechanical Engineering ,Melanoma ,Vaccination ,Investigational New Drug ,Immunotherapy ,021001 nanoscience & nanotechnology ,medicine.disease ,0104 chemical sciences ,CpG site ,Mechanics of Materials ,Cancer research ,Nanoparticles ,0210 nano-technology - Abstract
The success of immunotherapy with immune checkpoint inhibitors (ICIs) in a subset of individuals has been very exciting. However, in many cancers, responses to current ICIs are modest and are seen only in a small subsets of patients. Herein, a widely applicable approach that increases the benefit of ICIs is reported. Intratumoral administration of augmenting immune response and inhibiting suppressive environment of tumors-AIRISE-02 nanotherapeutic that co-delivers CpG and STAT3 siRNA-results in not only regression of the injected tumor, but also tumors at distant sites in multiple tumor model systems. In particular, three doses of AIRISE-02 in combination with systemic ICIs completely cure both treated and untreated aggressive melanoma tumors in 63% of mice, while ICIs alone do not cure any mice. A long-term memory immune effect is also reported. AIRISE-02 is effective in breast and colon tumor models as well. Lastly, AIRISE-02 is well tolerated in mice and nonhuman primates. This approach combines multiple therapeutic agents into a single nanoconstruct to create whole-body immune responses across multiple cancer types. Being a local therapeutic, AIRISE-02 circumvents regulatory challenges of systemic nanoparticle delivery, facilitating rapid translation to the clinic. AIRISE-02 is under investigational new drug (IND)-enabling studies, and clinical trials will soon follow.
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- 2021
8. Development of novel immunotherapy based on nanoparticle co-delivering PLK1 and PD-L1 inhibitors for lung cancer treatment
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Natnaree Siriwon, Ngoc Ha Hoang, Molly A. Nelson, Gordon B. Mills, Ruijie Wang, Moataz Reda, Worapol Ngamcherdtrakul, Joe W. Gray, Wassana Yantasee, Daniel S. Bejan, Sherif Reda, Akash Bindal, and Husam Y. Zaidan
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carbohydrates (lipids) ,biology ,business.industry ,medicine.medical_treatment ,PD-L1 ,medicine ,biology.protein ,Cancer research ,Immunotherapy ,business ,Lung cancer ,medicine.disease ,PLK1 - Abstract
Immune checkpoint inhibitors (ICIs) targeting PD-L1 and PD-1 have improved survival in a subset of patients with advanced non-small cell lung cancer (NSCLC). However, only a minority of NSCLC patients respond to ICIs, highlighting the need for superior immunotherapy. Herein, we developed a nanoparticle-based immunotherapy termed ARAC (Antigen Release Agent and Checkpoint Inhibitor) to enhance the efficacy of PD-L1 inhibitor. ARAC is nanoparticle co-delivering PLK1 inhibitor, volasertib, and PD-L1 antibody. PLK1 is a key mitotic kinase that is overexpressed in various cancers including NSCLC and drives cancer growth. Inhibition of PLK1 selectively kills cancer cells and upregulates PD-L1 expression in surviving cancer cells thereby providing opportunity for ARAC targeted delivery in a positive feedback manner. ARAC reduced effective doses of volasertib and PD-L1 antibody by 5-fold in a metastatic lung tumor model and the effect was mainly mediated by CD8 + T cells. We also observed abscopal effect of ARAC in bilateral NSCLC tumor model and achieved complete cures in some mice when incorporating immune-stimulant CpG onto ARAC. Further, ARAC was well-tolerated in non-human primates. This study highlights a rationale combination strategy to augment existing therapies by utilizing our nanoparticle platform that can load multiple cargo types at once.
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- 2021
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9. Removal of a gadolinium based contrast agent by a novel sorbent hemoperfusion in a chronic kidney disease (CKD) rodent model
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Thanapon Sangvanich, Moataz Reda, Worapol Ngamcherdtrakul, Jingga Morry, Daniel S. Bejan, Glen E. Fryxell, and Wassana Yantasee
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0301 basic medicine ,Gadolinium DTPA ,Male ,Gadolinium ,medicine.medical_treatment ,chemistry.chemical_element ,Renal function ,Contrast Media ,lcsh:Medicine ,Pharmacology ,Kidney Function Tests ,Article ,Drug Hypersensitivity ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,medicine ,Organometallic Compounds ,Animals ,Rats, Wistar ,Renal Insufficiency, Chronic ,lcsh:Science ,Multidisciplinary ,Gadodiamide ,Adenine ,lcsh:R ,medicine.disease ,Hemoperfusion ,Silicon Dioxide ,Magnetic Resonance Imaging ,3. Good health ,Rats ,Disease Models, Animal ,030104 developmental biology ,chemistry ,Toxicity ,lcsh:Q ,030217 neurology & neurosurgery ,Ex vivo ,Kidney disease ,medicine.drug - Abstract
Gadolinium based contrast agents (GBCAs) have been linked to toxicity in patients, regardless of having impaired or normal renal function. Currently, no therapy is considered highly effective for removing gadolinium (Gd) from the body. We propose a new strategy to reduce blood Gd content that facilitates whole body removal of Gd using a hemoperfusion system consisting of a cartridge of porous silica beads (Davisil®) functionalized with 1,2-hydroxypyridinone (1,2-HOPO). Herein, we report optimization of the hemoperfusion system using an ex vivo blood and an in vivo rat model of chronic kidney disease (CKD). In our ex vivo system, 1,2-HOPO-Davisil outperformed Gambro activated charcoal (AC), which is commonly used in clinical hemoperfusion of aqueous toxins, in terms of Gd capture capacity and rate. In the CKD rat model, the 1,2-HOPO-Davisil hemoperfusion system removed Gd by 3.4 times over the Gambro AC system. 1,2-HOPO-Davisil did not change complete blood counts and common blood biochemistry. Thus, this strategy has great potential for clinical translation to manage GBCAs after magnetic resonance imaging (MRI), before Gd can deposit in the body and cause long-term toxicity. Although gadodiamide was used as a proof of concept model for GBCAs in this study, 1,2-HOPO functionalized mesoporous silica could also capture dissociated Gd and other GBCAs.
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- 2019
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10. Targeted Nanoparticle for Co‐delivery of HER2 siRNA and a Taxane to Mirror the Standard Treatment of HER2 + Breast Cancer: Efficacy in Breast Tumor and Brain Metastasis (Small 11/2022)
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Worapol Ngamcherdtrakul, Daniel S. Bejan, William Cruz‐Muñoz, Moataz Reda, Husam Y. Zaidan, Natnaree Siriwon, Suphalak Marshall, Ruijie Wang, Molly A. Nelson, Justin P. C. Rehwaldt, Joe W. Gray, Kullervo Hynynen, and Wassana Yantasee
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Biomaterials ,General Materials Science ,General Chemistry ,Biotechnology - Published
- 2022
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11. The non-canonical target PARP16 contributes to polypharmacology of the PARP inhibitor talazoparib and its synergy with WEE1 inhibitors
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Uwe Rix, Eric B. Haura, Xueli Li, Vinayak Palve, Silvia Novakova, John M. Koomen, Claire E. Knezevic, Bin Fang, Daniel S. Bejan, Alvaro N.A. Monteiro, Eric A. Welsh, Michael S. Cohen, Yunting Luo, Fumi Kinose, and Harshani R. Lawrence
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Male ,Cell Survival ,Clinical Biochemistry ,Antineoplastic Agents ,Cell Cycle Proteins ,Poly(ADP-ribose) Polymerase Inhibitors ,Biology ,Biochemistry ,Article ,Olaparib ,chemistry.chemical_compound ,PARP1 ,Neoplasms ,Drug Discovery ,Tumor Cells, Cultured ,Humans ,Talazoparib ,Gene silencing ,Rucaparib ,Molecular Biology ,Aged ,Cell Proliferation ,Pharmacology ,Cell Cycle ,Phosphoproteomics ,Protein-Tyrosine Kinases ,Wee1 ,chemistry ,PARP inhibitor ,Cancer research ,biology.protein ,Phthalazines ,Molecular Medicine ,Female ,Drug Screening Assays, Antitumor ,Poly(ADP-ribose) Polymerases ,DNA Damage - Abstract
PARP inhibitors (PARPis) display single-agent anticancer activity in small cell lung cancer (SCLC) and other neuroendocrine tumors independent of BRCA1/2 mutations. Here, we determine the differential efficacy of multiple clinical PARPis in SCLC cells. Compared with the other PARPis rucaparib, olaparib, and niraparib, talazoparib displays the highest potency across SCLC, including SLFN11-negative cells. Chemical proteomics identifies PARP16 as a unique talazoparib target in addition to PARP1. Silencing PARP16 significantly reduces cell survival, particularly in combination with PARP1 inhibition. Drug combination screening reveals talazoparib synergy with the WEE1/PLK1 inhibitor adavosertib. Global phosphoproteomics identifies disparate effects on cell-cycle and DNA damage signaling thereby illustrating underlying mechanisms of synergy, which is more pronounced for talazoparib than olaparib. Notably, silencing PARP16 further reduces cell survival in combination with olaparib and adavosertib. Together, these data suggest that PARP16 contributes to talazoparib's overall mechanism of action and constitutes an actionable target in SCLC.
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- 2022
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12. Methods for profiling the target and off-target landscape of PARP inhibitors
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Daniel S. Bejan and Michael S. Cohen
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Pharmacology (medical) - Published
- 2022
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13. PLK1 and EGFR targeted nanoparticle as a radiation sensitizer for non-small cell lung cancer
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Shenda Gu, Daniel S. Bejan, Moataz Reda, Natnaree Siriwon, Worapol Ngamcherdtrakul, Joe W. Gray, and Wassana Yantasee
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0301 basic medicine ,Male ,Cancer Research ,Radiosensitizer ,Radiation-Sensitizing Agents ,Lung Neoplasms ,Cell Survival ,medicine.medical_treatment ,Cetuximab ,Cell Cycle Proteins ,Protein Serine-Threonine Kinases ,Article ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,Radiation sensitivity ,Carcinoma, Non-Small-Cell Lung ,Cell Line, Tumor ,Proto-Oncogene Proteins ,medicine ,Humans ,Epidermal growth factor receptor ,Molecular Targeted Therapy ,RNA, Small Interfering ,Lung cancer ,biology ,business.industry ,medicine.disease ,Xenograft Model Antitumor Assays ,Radiation therapy ,ErbB Receptors ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Treatment Outcome ,Oncology ,A549 Cells ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,biology.protein ,Nanoparticles ,business ,medicine.drug - Abstract
Radiation sensitizers that can selectively act on cancer cells hold great promise to patients who receive radiation therapy. We developed a novel targeted therapy and radiation sensitizer for non-small cell lung cancer (NSCLC) based on cetuximab conjugated nanoparticle that targets epidermal growth factor receptor (EGFR) and delivers small interfering RNA (siRNA) against polo-like kinase 1 (PLK1). EGFR is overexpressed in 50% of lung cancer patients and a mediator of DNA repair, while PLK1 is a key mitotic regulator whose inhibition enhances radiation sensitivity. The nanoparticle construct (C-siPLK1-NP) effectively targets EGFR + NSCLC cells and reduces PLK1 expression, leading to G2/M arrest and cell death. Furthermore, we show a synergistic combination between C-siPLK1-NP and radiation, which was confirmed in vivo in A549 flank tumors. We also demonstrate the translational potential of C-siPLK1-NP as a systemic therapeutic in an orthotopic lung tumor model, where administration of C-siPLK1-NP reduced tumor growth and led to prolonged survival. Our findings demonstrate that C-siPLK1-NP is effective as a targeted therapy and as a potent radiation sensitizer for NSCLC. Potential application to other EGFR + cancer types such as colorectal and breast cancer is also demonstrated.
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- 2019
14. Tumor Therapy: In Situ Tumor Vaccination with Nanoparticle Co‐Delivering CpG and STAT3 siRNA to Effectively Induce Whole‐Body Antitumor Immune Response (Adv. Mater. 31/2021)
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Wassana Yantasee, Molly A. Nelson, Joe W. Gray, Husam Y. Zaidan, Sancy A. Leachman, Worapol Ngamcherdtrakul, Gordon B. Mills, Moataz Reda, Daniel S. Bejan, Ryan S. Lane, Ngoc Ha Hoang, Amanda W. Lund, Shiuh-Wen Luoh, and Ruijie Wang
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Materials science ,biology ,Mechanical Engineering ,medicine.medical_treatment ,Intratumoral Therapy ,Melanoma ,Tumor therapy ,medicine.disease ,Vaccination ,Immune system ,Cancer immunotherapy ,CpG site ,Mechanics of Materials ,Cancer research ,medicine ,biology.protein ,General Materials Science ,STAT3 - Published
- 2021
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15. Lyophilization and stability of antibody-conjugated mesoporous silica nanoparticle with cationic polymer and PEG for siRNA delivery
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Wassana Yantasee, Worapol Ngamcherdtrakul, Shenda Gu, Thanapon Sangvanich, Moataz Reda, and Daniel S. Bejan
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Pharmaceutical Science ,Nanoparticle ,02 engineering and technology ,01 natural sciences ,Polyethylene Glycols ,chemistry.chemical_compound ,Drug Stability ,International Journal of Nanomedicine ,antibody ,Freezing ,Drug Discovery ,Copolymer ,Polyethyleneimine ,RNA, Small Interfering ,Original Research ,chemistry.chemical_classification ,Aqueous solution ,Temperature ,General Medicine ,Polymer ,Silicon Dioxide ,021001 nanoscience & nanotechnology ,3. Good health ,0210 nano-technology ,Porosity ,lyophilization ,Biophysics ,Bioengineering ,Buffers ,010402 general chemistry ,Antibodies ,Biomaterials ,Cations ,Cell Line, Tumor ,PEG ratio ,cancer ,Humans ,mesoporous silica ,Particle Size ,Polyethylenimine ,Organic Chemistry ,Cationic polymerization ,Mesoporous silica ,0104 chemical sciences ,Freeze Drying ,chemistry ,Chemical engineering ,siRNA ,Hydrodynamics ,Nanoparticles - Abstract
Worapol Ngamcherdtrakul,1,2,* Thanapon Sangvanich,1,* Moataz Reda,1 Shenda Gu,1 Daniel Bejan,2 Wassana Yantasee1,2 1Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA; 2Nanomedicine Research Unit, PDX Pharmaceuticals, LLC, Portland, OR, USA *These authors contributed equally to this work Introduction: Long-term stability of therapeutic candidates is necessary toward their clinical applications. For most nanoparticle systems formulated in aqueous solutions, lyophilization or freeze-drying is a common method to ensure long-term stability. While lyophilization of lipid, polymeric, or inorganic nanoparticles have been studied, little has been reported on lyophilization and stability of hybrid nanoparticle systems, consisting of polymers, inorganic particles, and antibody. Lyophilization of complex nanoparticle systems can be challenging with respect to preserving physicochemical properties and the biological activities of the materials. We recently reported an effective small-interfering RNA (siRNA) nanoparticle carrier consisting of 50-nm mesoporous silica nanoparticles decorated with a copolymer of polyethylenimine and polyethyleneglycol, and antibody. Materials and methods: Toward future personalized medicine, the nanoparticle carriers were lyophilized alone and loaded with siRNA upon reconstitution by a few minutes of simple mixing in phosphate-buffered saline. Herein, we optimize the lyophilization of the nanoparticles in terms of buffers, lyoprotectants, reconstitution, and time and temperature of freezing and drying steps, and monitor the physical and chemical properties (reconstitution, hydrodynamic size, charge, and siRNA loading) and biological activities (gene silencing, cancer cell killing) of the materials after storing at various temperatures and times. Results: The material was best formulated in Tris-HCl buffer with 5% w/w trehalose. Freezing step was performed at -55°C for 3 h, followed by a primary drying step at -40°C (100 μBar) for 24 h and a secondary drying step at 20°C (20 μBar) for 12 h. The lyophilized material can be stored stably for 2 months at 4°C and at least 6 months at -20°C. Conclusion: We successfully developed the lyophilization process that should be applicable to other similar nanoparticle systems consisting of inorganic nanoparticle cores modified with cationic polymers, PEG, and antibodies. Keywords: nanoparticles, lyophilization, cancer, mesoporous silica, antibody, siRNA
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- 2018
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