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Ultraviolet-visible (UV-Vis) absorption spectra are routinely collected as part of high-performance liquid chromatography (HPLC) analysis systems and can be used to identify chemical reaction products by comparison to the reference spectra. Here, we present UV-adVISor as a new computational tool for predicting the UV-Vis spectra from a molecule's structure alone. UV-Vis prediction was approached as a sequence-to-sequence problem. We utilized Long-Short Term Memory and attention-based neural networks with Extended Connectivity Fingerprint Diameter 6 or molecule SMILES to generate predictive models for the UV spectra. We have produced two spectrum datasets (dataset I, N = 949, and dataset II, N = 2222) using different compound collections and spectrum acquisition methods to train, validate, and test our models. We evaluated the prediction accuracy of the complete spectra by the correspondence of wavelengths of absorbance maxima and with a series of statistical measures (the best test set median model parameters are in parentheses for model II), including RMSE (0.064), R2 (0.71), and dynamic time warping (DTW, 0.194) of the entire spectrum curve. Scrambling molecule structures with the experimental spectra during training resulted in a degraded R2, confirming the utility of the approaches for prediction. UV-adVISor is able to provide fast and accurate predictions for libraries of compounds.

Ultraviolet-visible (UV-Vis) absorption spectra are routinely collected as part of high-performance liquid chromatography (HPLC) analysis systems and can be used to identify chemical reaction products by comparison to reference spectra. Here, we present UV-adVISor as a new computational tool for predicting UV-Vis spectra from a molecule’s structure alone. UV-Vis prediction was approached as a sequence-to-sequence problem. We utilized Long-Short Term Memory and attention-based neural networks with Extended Connectivity Fingerprint diameter 6 or molecule SMILES to generate predictive models for UV-spectra. We have produced two spectrum datasets (Dataset I, N = 949 and Dataset II, N = 2222) using different compound collections and spectrum acquisition methods to train, validate, and test our models. We evaluated the prediction accuracy of the complete spectra by the correspondence of wavelengths of absorbance maxima and with a series of statistical measures (the best test set median model parameters are in parentheses for Model II), including RMSE (0.064), R2 (0.71), and dynamic time warping (DTW, 0.194) of the entire spectrum curve. Scrambling molecule structures with experimental spectra during training resulted in a degraded R2, confirming the utility of the approaches for prediction. UV-adVISor is able to provide fast and accurate predictions for libraries of compounds.

Ultraviolet-visible (UV-Vis) absorption spectra are routinely collected as part of high-performance liquid chromatography (HPLC) analysis systems and can be used to identify chemical reaction products by comparison to reference spectra. Here, we present UV-adVISor as a new computational tool for predicting UV-Vis spectra from a molecule’s structure alone. UV-Vis prediction was approached as a sequence-to-sequence problem. We utilized Long-Short Term Memory and attention-based neural networks with Extended Connectivity Fingerprint diameter 6 or molecule SMILES to generate predictive models for UV-spectra. We have produced two spectrum datasets (Dataset I, N = 949 and Dataset II, N = 2222) using different compound collections and spectrum acquisition methods to train, validate, and test our models. We evaluated the prediction accuracy of the complete spectra by the correspondence of wavelengths of absorbance maxima and with a series of statistical measures (the best test set median model parameters are in parentheses for Model II), including RMSE (0.064), R2 (0.71), and dynamic time warping (DTW, 0.194) of the entire spectrum curve. Scrambling molecule structures with experimental spectra during training resulted in a degraded R2, confirming the utility of the approaches for prediction. UV-adVISor is able to provide fast and accurate predictions for libraries of compounds.

Molecular energy transfer processes at solid surfaces are profoundly important, influencing trapping, desorption, diffusion, and reactivity; in short, all of the elementary steps needed for surface chemistry to take place. In this paper we review recent progress in our understanding of energy transfer at surfaces with a particular emphasis on those phenomena, which are peculiar to solids with delocalized electronic structure, e.g. electronically nonadiabatic energy transfer. This area of study represents an area requiring significant extensions of our theoretical understanding, which is largely based on density functional theory. This review provides an overview of some of the experimental and theoretical tools presently being used in this field and a description of several illustrative examples of work that have helped to shape our understanding.

We observe electron emission from low work function Cs covered Au surfaces due to the scattering of vibrationally excited NO molecules with 18 quanta of vibration in the ground electronic state. Additional experiments explore the influence of oxygen exposure on the electron emission. These results indicate a nondissociative mechanism for reactivity of vibrationally excited NO on these surfaces and provide evidence against an Auger-like mechanism. We note a remarkable similarity between trends of the vibrationally produced electron emission as the surface composition changes and reports on surface work function.

We present a detailed report of experiments where hexapole focusing is combined with stimulated emission and Franck–Condon optical pumping techniques on a molecular beam. We show that this approach allows one to achieve a high degree of control over the molecule's ro-vibronic quantum numbers, its laboratory frame velocity, and its transverse divergence. Specifically, new ways of manipulating beams of vibrationally excited molecules emerge, including: (1) transverse refocusing and concomitant improved efficiency for transport of the vibrationally excited molecules, (2) relative enrichment of the concentration of the vibrationally excited molecules with respect to the unexcited portion of the beam, and (3) orientation of vibrationally excited molecules. Laser induced fluorescence, fluorescence depletion, Franck–Condon pumping, stimulated emission pumping, resonance enhanced multi-photon ionization, and hexapole focusing all provide spectroscopic probes into the detailed characteristics of this experiment.

We report experiments where hexapole focusing is combined with stimulated emission pumping in a molecular beam, providing control over the molecule’s rovibronic quantum numbers, its laboratory frame velocity and its transverse divergence. Hexapole focusing profiles can be quantitatively reproduced by classical trajectory simulations. These experiments provide new ways of manipulating beams of vibrationally excited molecules including: (1) transverse refocusing and concomitant improved efficiency for transport of the vibrationally excited molecules, (2) relative enrichment of the concentration of the vibrationally excited molecules with respect to the unexcited portion of the beam and, (3) orientation of vibrationally excited molecules.

We report the first direct measurement of the kinetic energy of exoelectrons produced by collisions of vibrationally excited molecules with a low work function metal surface exhibiting electron excitations of 64% (most probable) and 95% (maximum) of the initial vibrational energy. This remarkable efficiency for vibrational-to-electronic energy transfer is in good agreement with previous results suggesting the coupling of multiple vibrational quanta to a single electron.

Gaining insight into the nature and dynamics of the transition state is the essence of mechanistic investigations of chemical reactions1, yet the fleeting configuration when existing chemical bonds dissociate while new ones form is extremely difficult to examine directly2. Adiabatic potential-energy surfaces—usually derived using quantum chemical methods3 that assume mutually independent nuclear and electronic motion4—quantify the fundamental forces between atoms involved in reaction and thus provide accurate descriptions of a reacting system as it moves through its transition state5,6. This approach, widely tested for gas-phase reactions7, is now also commonly applied to chemical reactions at metal surfaces8. There is, however, some evidence calling into question the correctness of this theoretical approach for surface reactions: electronic excitation upon highly exothermic chemisorption has been observed9, and indirect evidence suggests that large-amplitude vibrations of reactant molecules can excite electrons at metal surfaces10,11. Here we report the detection of ‘hot’ electrons leaving a metal surface as vibrationally highly excited NO molecules collide with it. Electron emission only occurs once the vibrational energy exceeds the surface work function, and is at least 10,000 times more efficient than the emissions seen in similar systems where large-amplitude vibrations were not involved12,13,14,15,16,17,18. These observations unambiguously demonstrate the direct conversion of vibrational to electronic excitation, thus questioning one of the basic assumptions currently used in theoretical approaches to describing bond-dissociation at metal surfaces.

The Born-Oppenheimer Approximation (BOA) forms the basis for calculating electronically adiabatic potential energy surfaces, thus providing the framework for developing a molecular level understanding of a variety of important chemical problems. For surface chemistry at metal surfaces, it is now clear that for some processes electronically nonadiabatic effects can be important, even dominant; however, the magnitude of BOA breakdown may vary widely from one chemical system to another. In this paper we show that molecular-beam surface scattering experiments can be used to derive quantitative information about the magnitude of BOA breakdown. A state-to-state rate model is used to interpret the pre-exponential factor of the well-known Arrhenius surface temperature dependence of the electronically nonadiabatic vibrational excitation. We also show that reference to a "thermal limit" provides a quick and simple rule of thumb for quantifying BOA breakdown. We demonstrate this approach by comparing electronically nonadiabatic vibrational inelasticity for NO(ν = 0 → 1) to NO(ν = 15 →ν'≪ 15) and show that the electronically nonadiabatic coupling strengths are of a similar magnitude. We compare experiments for NO and HCl scattering from Au(111) and derive the quantitative relative magnitude for the electronically nonadiabatic influences in each system. The electronically nonadiabatic influences are 300-400 times larger for NO than for HCl, for incidence energies near 0.9 eV. peerReviewed

Here we extend a recently introduced state-to-state kinetic model describing single- and multi-quantum vibrational excitation of molecular beams of NO scattering from a Au(111) metal surface. We derive an analytical expression for the rate of electronically non-adiabatic vibrational energy transfer, which is then employed in the analysis of the temperature dependence of the kinetics of direct overtone and two-step sequential energy transfer mechanisms. We show that the Arrhenius surface temperature dependence for vibrational excitation probability reported in many previous studies emerges as a low temperature limit of a more general solution that describes the approach to thermal equilibrium in the limit of infinite interaction time and that the pre-exponential term of the Arrhenius expression can be used not only to distinguish between the direct overtone and sequential mechanisms, but also to deduce their relative contributions. We also apply the analytical expression for the vibrational energy transfer rates introduced in this work to the full kinetic model and obtain an excellent fit to experimental data, the results of which show how to extract numerical values of the molecule-surface coupling strength and its fundamental properties. peerReviewed

We have measured the vibrational excitation probability (Pv) of HCl incident on a Au(111) surface at kinetic energies (Ei) of 0.59 eV to 1.37 eV and surface temperatures (Ts) of 273 K to 1073 K. For all energies, the slope of the Pv as a function of Ts exhibits a sharp increase above Ts approximately 800 K. We show this change in slope and the threshold behavior of Pv to be consistent with a change in excitation mechanism from an electronically adiabatic mechanical mechanism to an electronically nonadiabatic mechanism involving excited electron-hole pairs.

Vibrational excitation of HCl molecules (ν = 0 → 1) has been observed when HCl molecular beams at energies of 0.59–1.37 eV are scattered from a Au(1 1 1) surface at low surface temperature (Ts = 273 K). The incident and scattered HCl is probed state-selectively using 2 + 1 REMPI. The vibrational excitation probability depends strongly on incidence kinetic energy, Ei, exhibiting a threshold near ∼Ei = 0.57 eV. We measured the absolute vibrational excitation probability which varies from 10−6 to 10−5 over this energy range, 1–2 orders of magnitude higher than the thermal equilibrium expectation value. The magnitude of the excitation probability, the near specular angular distributions of the scattered ν = 1 molecules and the dramatic narrowing of the angular distribution near threshold are all consistent with a direct translation to vibration (T–V) mechanical energy transfer mechanism.

We describe an advanced and highly sensitive instrument for quantum state-resolved molecule-surface energy transfer studies under ultrahigh vacuum (UHV) conditions. The apparatus includes a beam source chamber, two differential pumping chambers, and a UHV chamber for surface preparation, surface characterization, and molecular beam scattering. Pulsed and collimated supersonic molecular beams are generated by expanding target molecule mixtures through a home-built pulsed nozzle, and excited quantum state-selected molecules were prepared via tunable, narrow-band laser overtone pumping. Detection systems have been designed to measure specific vibrational-rotational state, time-of-flight, angular and velocity distributions of molecular beams coming to and scattered off the surface. Facilities are provided to clean and characterize the surface under UHV conditions. Initial experiments on the scattering of HCl(v = 0) from Au(111) show many advantages of this new instrument for fundamental studies of the energy transfer at the gas-surface interface.

We observe electron emission when vibrationally excited NO molecules with vibrational state v, in the range of 9or = vor =18, are scattered from a Cs-dosed Au surface. The quantum efficiency increases strongly with v, increasing up to 10(-2) electrons per NO (v) collision, a value several orders of magnitude larger than that observed in experiments with similar molecules in the ground vibrational state. The electron emission signal, as a function of v, has a threshold where the vibrational excitation energy slightly exceeds the surface work function. This threshold behavior strongly suggests that we are observing the direct conversion of NO vibrational energy into electron kinetic energy. Several potential mechanisms for the observed electron emission are explored, including (1) vibrational autodetachment, (2) an Auger-type two-electron process, and (3) vibrationally promoted dissociation. The results of this work provide direct evidence for nonadiabatic energy-transfer events associated with large amplitude vibrational motion at metal surfaces.

Nanosecond optical pulses with high power and spectral brightness in the deep ultraviolet (UV) region have been produced by sum frequency mixing of nearly transform-limited-bandwidth IR light originating from a home-built injection-seeded ring cavity KTiOPO(4) optical parametric oscillator (OPO) and the fourth harmonic beam of an injection-seeded Nd:YAG laser used simultaneously to pump the OPO with the second harmonic. We demonstrate UV output, tunable from 204 to 207 nm, which exhibits pulse energies up to 5 mJ with a bandwidth better than 0.01 cm(-1). We describe how the approach shown in this paper can be extended to wavelengths shorter than 185 nm. The injection-seeded OPO provides high conversion efficiency (40% overall energy conversion) and superior beam quality required for highly efficient downstream mixing where sum frequencies are generated in the UV. The frequency stability of the system is excellent, making it highly suitable for optical pumping. We demonstrate high resolution spectroscopy as well as optical pumping using laser-induced fluorescence and stimulated emission pumping, respectively, in supersonic pulsed molecular beams of nitric oxide.