2,874 results on '"Daniel, Robert"'
Search Results
2. Customer Stock Ownership as Monopoly Utility Political Strategy in the 1910s and 1920s
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Daniel, Robert
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- 2017
3. Can education influence the public’s vulnerability to county lines?
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Hayman, Chloe-Marie, Stubbings, Daniel Robert, Davies, Joseph Lloyd, and Payne, Libby
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- 2024
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4. Intrinsic Gaussian Vector Fields on Manifolds.
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Daniel Robert-Nicoud, Andreas Krause 0001, and Viacheslav Borovitskiy
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- 2024
5. Gems of Accelerated Public Speaking Theory in Africa (APS): The Case of Obuha
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Aswani, Daniel Robert and Langmia, Kehbuma, editor
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- 2024
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6. Incidence and risk factors of hypothyroidism after treatment for early breast cancer: a population-based cohort study
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Digkas, Evangelos, Smith, Daniel Robert, Wennstig, Anna-Karin, Matikas, Alexios, Tegnelius, Eva, and Valachis, Antonios
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- 2024
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7. Profiling (adipo)cytokines in cancer cachexia
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Paval, Daniel Robert and Gallagher, Iain J.
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cachexia ,intelectin ,adipokine ,cytokine ,cancer ,omentin ,interleukin ,leptin ,resistin ,skeletal muscle ,sarcopenia ,weight loss ,Musculoskeletal system - Abstract
Cancer cachexia is an unmet clinical need that affects more than half of patients with cancer. Pro-inflammatory cytokines and adipokines could be involved in the pathogenesis and development of cachexia, but this relationship is not completely understood. This thesis aimed to examine and characterise the role of (adipo)cytokines in cancer cachexia. A systematic review was conducted to evaluate the relationship between cytokines and cachexia in people with incurable cancer (Chapter 2). Interleukin-6 (IL-6) and tumour necrosis factor-α (TNF-α) were considerably elevated in cachectic individuals, and a high degree of methodological heterogeneity was observed. Furthermore, data from the REVOLUTION trial were analysed to determine if adiponectin, leptin, intelectin-1 and resistin can predict the modified Glasgow Prognostic Score (mGPS) and cachexia status (Chapter 3). Although adipokines could not predict any of the outcome variables in this study, leptin was negatively associated with mGPS and cachexia, while a positive relationship was identified between resistin and mGPS. Previous research suggested that intelectin-1 might be involved in cancer cachexia. Given the limited availability of literature, a Bayesian meta-analysis was conducted to evaluate the role of intelectin-1 in cancer and its physiological concentration (Chapter 4). Intelectin-1 levels were substantially higher in patients with gastrointestinal cancer compared to controls. The meta-analysis also estimated that the physiological concentration of intelectin-1 ranges from 193ng/ml to 275ng/ml. Lastly, a cell culture model was designed to evaluate the effect of intelectin-1 on human myotubes (Chapter 5). Increased levels of intelectin-1 diminish insulin-mediated glucose uptake and downregulate the expression of genes involved in myogenesis. To conclude, IL-6 and TNF-α were highly expressed in cancer cachexia. Leptin and resistin could also contribute to the development of this wasting syndrome, but to a lesser extent. Besides these (adipo)cytokines, intelectin-1 is another potential biomarker of cachexia and future research should focus on elucidating its mechanisms of action.
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- 2023
8. ‘Visions du monde’: Baudelaire et cie by Melvin Zimmerman (review)
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Daniel, Robert R.
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- 2014
9. The effects of exposure to violence on social network composition and formation
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Thomas, Daniel Robert
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- 2024
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10. Unifying laminar and turbulent dynamics of plumes
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Ward, Daniel Robert, Pegler, Sam, and Ferguson, David
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Buoyant plumes are widespread physical phenomena, present across a large range of scales, from the plume generated by a candle to a mantle plume beneath the crust of the Earth, and spanning laminar to fully turbulent flow. In its most basic form, a plume is the vertical transport of heat emanating from a buoyancy source. Despite the ubiquity of plumes and their role in heat and mass transport, many aspects of their dynamics are still not fully understood. In the literature, plumes are often separated into laminar and turbulent regimes and are yet to be combined into a cohesive theory of plume evolution and structure. In this thesis, I perform a theoretical and numerical analysis of pure plumes generated by a localised point source of heat in order to unify these separate theories in a description of a hybrid laminar-turbulent plume. The governing equations for a plume are shown to be dependent on only one dimensionless parameter, the Prandtl number, which is the ratio of kinematic viscosity to thermal diffusivity. Using direct numerical simulations (DNS) combined with scaling analysis, I establish some universal properties of pure plumes. Following the laminar regime, the height at which instability occurs, hereafter referred to as height to instability, for the case Pr = 1, is found. The turbulent regime is described using similarity scalings and a virtual origin (differing from the height to instability) is found, implying that the transition region exists over a nonzero spatial range. Expanding on this work, further DNS are undertaken to derive a unified laminar-turbulent theory of a plume in an unstratified environment emanating from a point source over a range of Prandtl numbers. The height to instability is found to increase sublinearly with Prandtl number and a formula for interpolating the height to instability within the range Pr = 0.1 to 2.0 is fitted to the results. My investigation into developing a unified laminar-turbulent theory of plume rise from a point source is further expanded by introducing a linear stratification to the background. This introduces another length scale to the problem and the relationship between height to instability and maximum rise height is investigated. I performed DNS of plumes across a wide spectrum of Reynolds numbers and developed a simplified theory of low-Re plumes, resulting in excellent agreement with the predictions of the DNS. Interestingly, the results demonstrate a non-monotonic relationship between rise height and Reynolds number, with a global maximum at Reynolds number is approximately 1500. Finally, the unstratified results are applied to the transport (e.g. of pathogens) in the built environment by local sources of heat. A hybrid laminar-turbulent theory of particle transport in rooms is developed using the results of height to instability. Remarkably, a strongly non-monotonic relationship between transport rates of particles and the initial buoyancy flux, with two turning points, is discovered.
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- 2022
11. Analysis of diagnostic test outcomes in a large loiasis cohort from an endemic region: Serological tests are often false negative in hyper-microfilaremic infections.
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Luzia Veletzky, Kirsten Alexandra Eberhardt, Jennifer Hergeth, Daniel Robert Stelzl, Rella Zoleko Manego, Ruth Kreuzmair, Gerrit Burger, Johannes Mischlinger, Matthew B B McCall, Ghyslain Mombo-Ngoma, Ayôla Akim Adegnika, Selidji Todagbe Agnandji, Pierre Blaise Matsiegui, Bertrand Lell, Peter Kremsner, Benjamin Mordmüller, Dennis Tappe, and Michael Ramharter
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundThe parasitic disease loiasis is associated with significant morbidity and mortality. Individuals with hyper-microfilaremia (greater than 20,000 microfilariae per mL of blood) may suffer from serious treatment-related or spontaneous adverse events. Diagnosing loiasis remains complex and primarily relies on direct parasite detection. In this study, we analyzed the performance of various diagnostic tests and the influence of parasitological and clinical factors on test outcomes in samples from individuals living in an endemic region.MethodsData and samples were collected from rural Gabon. Loiasis was defined as either detectable microfilaremia, or a positive history of eyeworm as assessed by the RAPLOA questionnaire. Diagnostic testing included a quantitative PCR (qPCR) for detection of Loa loa DNA in blood samples, an in-house crude L. loa antigen IgG ELISA, and a rapid test for antibodies against the Ll-SXP-1 antigen (RDT). Sensitivity and specificity were determined for each test and factors potentially influencing outcomes were evaluated in an exploratory analysis.ResultsELISA, RDT and qPCR results were available for 99.8%, 78.5%, and 100% of the 1,232 participants, respectively. The ELISA and RDT had only modest diagnostic accuracy. qPCR was specific for L. loa microfilaremia and Cycle threshold values correlated with microfilarial density. Anti-L. loa IgG levels were highest in occult loiasis, and antibody levels correlated inversely with L. loa microfilarial density as did RDT line intensities. Only 84.6% and 16.7% of hyper-microfilaremic individuals tested positive by ELISA (11/13) and RDT (2/12), respectively.ConclusionNone of the tests demonstrated high sensitivity and specificity for loiasis. Indirect diagnostic assays were characterized by low specificity. Additionally, hyper-microfilaremic individuals often tested negative by RDT and ELISA, indicating that these tests are not suitable for individual case management in endemic populations.
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- 2024
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12. Like-minded sources on Facebook are prevalent but not polarizing
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Nyhan, Brendan, Settle, Jaime, Thorson, Emily, Wojcieszak, Magdalena, Barberá, Pablo, Chen, Annie Y., Allcott, Hunt, Brown, Taylor, Crespo-Tenorio, Adriana, Dimmery, Drew, Freelon, Deen, Gentzkow, Matthew, González-Bailón, Sandra, Guess, Andrew M., Kennedy, Edward, Kim, Young Mie, Lazer, David, Malhotra, Neil, Moehler, Devra, Pan, Jennifer, Thomas, Daniel Robert, Tromble, Rebekah, Rivera, Carlos Velasco, Wilkins, Arjun, Xiong, Beixian, de Jonge, Chad Kiewiet, Franco, Annie, Mason, Winter, Stroud, Natalie Jomini, and Tucker, Joshua A.
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- 2023
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13. I2Map: IoT Device Attestation Using Integrity Map.
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Imran Makhdoom, Mehran Abolhasan, Justin Lipman, Daniel Robert Franklin, and Massimo Piccardi
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- 2023
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14. Bow shock interaction experiments in a magnetised collisional plasma
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Russell, Daniel Robert and Lebedev, Sergey
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This thesis reports on shock interaction experiments at the MAGPIE pulsed power facility. Bow shocks are produced by placing cylindrical obstacles into the supersonic, super- Alfvénic and super-fast-magnetosonic plasma outflow from an inverse wire array z-pinch. The wire array provides a continuous source of plasma for ~ 500 ns with a velocity of ~ 50 km/s which advects a dynamically significant magnetic field of ~ 1.5 - 2.5 T. The geometry of the experiment allows good diagnostic access to the bow shocks and obstacles are fielded in pairs so that neighbouring bow shocks interact. The complex shock structure which emerges is a result of the resistive diffusion length being much larger than the collisional mean free path. Two types of shock are seen. One is characterised by a large shock transition length and very little heating and is a sub-critical resistive dissipative shock. This is observed to form as a single shock across both obstacles. The second are two shocks which form close to the obstacles and are downstream of the resistive dissipative shock. These exhibit substantial heating and have a shorter transition length. We interpret these to be hydrodynamic-like. The experiments are diagnosed with laser interferometry, Faraday rotation imaging, optical Thomson scattering and optical self-emission imaging which provide detailed time and space resolved measurements of the plasma parameters, including inside the resistive dissipative shock transition. An experimental validation of the Faraday rotation imaging diagnostic is presented to evaluate analysis techniques. Experiments with different plasma materials are compared, which demonstrates the dependence of the resistive dissipative shock transition length on the resistive diffusion length. The experimental results are compared with AstroBEAR simulations including new simulation results which include a magnetic field in such systems for the first time. Preliminary results show good agreement with our interpretation of the experiments.
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- 2021
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15. Longitudinal clinical assessment of undergraduate dental students : building an argument for its validity
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Dickie, Jamie Daniel Robert
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Background: Assessment of healthcare professionals plays a pivotal role in safeguarding patients by ensuring practitioners have been appropriately trained before being permitted onto professional registers. This prevents the public from being treated by those who are not fit to practise healthcare subjects, including dentistry. In the UK, dental schools must provide the General Dental Council (GDC) with evidence that students have attained the necessary educational outcomes and are suitable to join the professional register. The GDC delegates responsibility of choosing appropriate assessment methods to obtain such evidence to the dental schools themselves. As part of their undergraduate assessment repertoire, some UK dental schools have adopted longitudinal assessment methods to measure development and consistency of competent performance in clinical environments. Although these longitudinal methods create a rich database of multiple points of evaluation over the duration of the Bachelor of Dental Surgery (BDS) curriculum, there is currently little evidence to support their use for assessing development of clinical competence. Therefore, there is a need to conduct thorough analyses of longitudinal clinical data using robust statistical methods and create evidence to support their validity for this purpose. Aims: This thesis aims to investigate the content and criterion validity and reliability of longitudinal clinical assessment, which will contribute towards a validity argument on its use in assessing the development of clinical competence among undergraduate dental students. It will also explore how the evidence for validity could be used to enhance assessment within dental education. Research design: A mixed methods approach, with quantitative and qualitative approaches, was adopted to address the study aims. For the quantitative component, statistical escriptions, and group-based trajectory models (GBTMs) tracking individual undergraduate's clinical performance over time were produced from longitudinal clinical assessment (LIFTUPP©) data for three dental student cohort's (2017-19; n=234). Content validity was investigated using LIFTUPP© performance indicator 4 as the threshold for competence. Distinct trajectories were created using a performance indicator 5 as the threshold, which were then used to investigate the concurrent and predictive subtypes of criterion validity. Concurrent validity was investigated by linking and cross-tabulating LIFTUPP© trajectory group memberships with BDS examination performance (mean scores and a "top 20%" performance in each BDS year). Predictive validity was investigated by linking and cross-tabulating undergraduate LIFTUPP© trajectory group memberships with postgraduate clinical performance trajectory group memberships generated from Longitudinal Evaluations of Performance (LEPs). Reliability was calculated using Cronbach's alpha. For the qualitative component of the study, a series of online focus groups with key stakeholders within dental education were conducted. Participants were presented with the results of the quantitative analyses and their opinions on how these data could be used to enhance assessment within dental education were canvassed. Transcripts of the focus group discussions were analysed using thematic analysis to identify themes (i.e., patterns) of interest within the data. Results: LIFTUPP© GBTMs with a threshold performance indicator of 4 resulted in all students following a single trajectory in all three cohorts and showed progressive development of clinical competence over three BDS clinical years, satisfying criteria for content validity. GBTMs with a threshold performance indicator of 5 provided at least two distinct trajectories of student clinical performance. According to the Bayesian information criterion (BIC), models with two distinct trajectories fitted the data best and a "better" performing trajectory was identifiable in each cohort. In the two most recent cohorts, students who were more likely to belong to the "better performing" LIFTUPP© trajectory scored higher (on average) in the undergraduate examinations for each BDS year. This association was not observed for cohort 1. Students allocated to "better performing" LIFTUPP© trajectories were more likely to also be assigned to "better performing" LEP trajectories in all three cohorts. Reliability for the undergraduate examinations was high in all three cohorts (>0.88) and did not change substantially when longitudinal clinical assessment data were included. Comments from focus group participants appeared to provide further support for content validity. However, quantitative results were met with a degree of mistrust that seemed to stem primarily from previous experiences of operational issues associated with the LIFTUPP© assessment process and the absence of contextual data within the quantitative analyses. Conclusions: The upward trend of LIFTUPP© trajectory patterns suggested there is evidence that longitudinal clinical performance data have content validity for the assessment of clinical competence. Associations between better LIFTUPP© performance and better undergraduate examination outcomes and better postgraduate clinical performance in the two most recent cohorts were indicative of criterion validity. The lack of association in cohort 1 may have been due to poorer calibration among assessors following the initial adoption of LIFTUPP© into the BDS curriculum. Evidence for LIFTUPP© data reliability was inconclusive. This uncertainty may have resulted from using probabilities of student trajectory group membership as the metric for longitudinal clinical assessment in the calculation of Cronbach's alpha. Therefore, further investigations on LIFTUPP© data reliability are required. Data processing procedures and suggestions from focus group participants revealed there is a need to improve current assessment practices and data collection to allow other investigations on validity to be pursued and to further increase confidence in the results produced by this study. Some data collection issues encountered in relation to LIFTUPP© and undergraduate examinations have since been resolved, meaning studies involving subsequent student cohorts should seek to incorporate LIFTUPP© communication, management and leadership, and professionalism data as well data from clinical case presentation examinations and one-off clinical competence tests. Overall, the study provides an early contribution towards a validity argument on the use of longitudinal clinical assessment in assessing development of competence in undergraduate dentists and provides a starting point from which consequent studies can be based. The study should now be expanded into different settings, e.g., other dental schools and disciplines (such as medicine, nursing, and veterinary medicine), to confirm and build upon these initial findings.
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- 2021
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16. Correlation of tumor PD-L1 expression in different tissue types and outcome of PD-1-based immunotherapy in metastatic melanoma – analysis of the DeCOG prospective multicenter cohort study ADOREG/TRIM
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Placke, Jan-Malte, Kimmig, Mona, Griewank, Klaus, Herbst, Rudolf, Terheyden, Patrick, Utikal, Jochen, Pföhler, Claudia, Ulrich, Jens, Kreuter, Alexander, Mohr, Peter, Gutzmer, Ralf, Meier, Friedegund, Dippel, Edgar, Welzel, Julia, Engel, Daniel Robert, Kreft, Sophia, Sucker, Antje, Lodde, Georg, Krefting, Frederik, Stoffels, Ingo, Klode, Joachim, Roesch, Alexander, Zimmer, Lisa, Livingstone, Elisabeth, Hadaschik, Eva, Becker, Jürgen C., Weichenthal, Michael, Tasdogan, Alpaslan, Schadendorf, Dirk, and Ugurel, Selma
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- 2023
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17. Non-invasive mapping of systemic neutrophil dynamics upon cardiovascular injury
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Bouvain, Pascal, Ding, Zhaoping, Kadir, Shiwa, Kleimann, Patricia, Kluge, Nils, Tiren, Zeynep-Büsra, Steckel, Bodo, Flocke, Vera, Zalfen, Ria, Petzsch, Patrick, Wachtmeister, Thorsten, John, Gordon, Subramaniam, Nirojah, Krämer, Wolfgang, Strasdeit, Tobias, Mehrabipour, Mehrnaz, Moll, Jens M., Schubert, Rolf, Ahmadian, Mohammad Reza, Bönner, Florian, Boeken, Udo, Westenfeld, Ralf, Engel, Daniel Robert, Kelm, Malte, Schrader, Jürgen, Köhrer, Karl, Grandoch, Maria, Temme, Sebastian, and Flögel, Ulrich
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- 2023
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18. Meaningful and Interactive Learning Experiences Provided through a Learning Management System: An Action Research Study in Ninth Grade Advanced Placement Human Geography
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Daniel Robert Plonski
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The purpose of this mixed methods action research was to determine if increased interactive Schoology-based modules could alter learner perceptions concerning the lack of meaningful learning (learner-instructor, learner-learner, learner-content) in the culture unit of instruction in an Advanced Placement Human Geography (APHG) classroom. A series of instructional modules were facilitated through the learning management system (LMS) Schoology to students (n = 16) in APHG at a southeastern U.S. high school. The interactions were designed to enhance interaction based upon the criteria provided by Piaget's (1981) social constructivist theory, specifically Moore and Kearsley's (2011) systems approach and Miyazoe and Anderson's (2010) interactive equivalency theorem. These approaches sought to create meaningful interactions as described in Vygotsky's (1978) zone of proximal development. This study addressed four research questions: (1) What are learners' perceptions of the learner-instructor, learner-learner, and learner-content interactions presented via the Schoology interactive modules in their culture unit of instruction? (2) What barriers are reported by students that hinder meaningful learner-instructor, learner-learner, and learner-content learning while using Schoology? (3) Do students' perceptions change after receiving increased interactive lessons presented through the Schoology interactive modules? (4) To what extent does student learning, as measured by a culture unit assessment, increase or decrease after the LMS driven instructional innovation? As a mixed methods study, quantitative and qualitative information, namely pre- and post surveys, panel group discussions, and interviews, served as the basis of the evaluation. Results indicated significant variances in the pre- and postsurvey as well as significant improvement from the pre- to posttest. Overall, significant differences were found in the general interactivity, learner-instructor, learner-content, and learner-learner subscales. This signifies that the interactivity in the teacher-created modules was interactive. Limitations such as the novelty effect and the non-generalizability of the results exist in the study. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2022
19. Eco-Friendly Inorganic Binders: A Key Alternative for Reducing Harmful Emissions in Molding and Core-Making Technologies
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Angelika Kmita, Rafał Dańko, Mariusz Holtzer, Józef Dańko, Dariusz Drożyński, Mateusz Skrzyński, Agnieszka Roczniak, Daniel Robert Gruszka, Jarosław Jakubski, and Sara Tapola
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reducing harmful emissions ,inorganic binders ,green casting ,sustainable polymeric materials ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Many years of foundry practice and much more accurate analytical methods have shown that sands with organic binders, in addition to their many technological advantages, pose risks associated with the emission of many compounds, including harmful ones (e.g., formaldehyde, phenol, benzene, polycyclic aromatic hydrocarbons, and sulfur), arising during the pouring of liquid casting alloys into molds, their cooling, and knock-out. The aim of this research is to demonstrate the potential benefits of adopting inorganic binders in European iron foundries. This will improve the environmental and working conditions by introducing cleaner and more ecological production methods, while also ranking the tested binders studied in terms of their harmful content. The article pays special attention to the analysis of seven innovative inorganic binders and one organic binder, acting as a reference for emissions of gases from the BTEX (benzene, toluene, ethylbenzene, and xylenes) and PAHs (polycyclic aromatic hydrocarbons) groups and other compounds such as phenol, formaldehyde, and isocyanates (MDI and TDI) generated during the mold pouring process with liquid metals. The knowledge gained will, for the first time, enrich the database needed to update the Reference Document on The Best Available Techniques for the Smitheries and Foundries Industry (SF BREF).
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- 2024
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20. Winter in America: A Cultural History of Neoliberalism, from the Sixties to the Reagan Revolution
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McClure, Daniel Robert, author and McClure, Daniel Robert
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- 2021
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21. France 2 Television News for Cultural Learning, Critical Thinking, and Language Practice: Steps toward Intercultural Capability
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Daniel, Robert R.
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This article describes a modular set of activities based on television news for teaching French language, cultural knowledge, and intercultural capability. The latter term echoes Lantolf and Poehner's symbolic capability (2007), a teaching and learning goal that the author considers more holistic and feasible than the more commonly used term Intercultural Competence (or IC). Generally speaking, the instructional strategies described here are best used to produce supplementary or complementary modules or lessons in courses whose principal focus is not news or current events. This modular strategy can offer significant opportunities for language practice, cultural learning, and culturally-focused critical thinking. In the modular lesson, a carefully-chosen but authentic, unedited, and nonsubtitled news report, typically two to five minutes long, forms the basis for a fifty-to seventy-five-minute session, with follow-up activities. The lesson's structured sequence of viewing, listening, discussion, and debate exercises with follow-up speaking, research, or writing activities is presented in this article, which comments on ways in which this approach supports intercultural models like Bennett's Developmental Model of Intercultural Sensitivity (1993), Byram's Intercultural Communicative Competence (1997), and the culture components of the "World-Readiness Standards for Language Learning" (National Standards Collaborative Board, 2015). It also evokes challenges inherent in models of intercultural learning and conceptual and practical shortcomings that shape assessment of intercultural capabilities. Finally, it suggests that this television news-based approach, used jointly with a model of intercultural learning that is informed by cognitive science and an attitude of intellectual humility, may offer a productive approach for promoting the intercultural capability in the language classroom and in students' lifelong learning.
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- 2017
22. Correlation of tumor PD-L1 expression in different tissue types and outcome of PD-1-based immunotherapy in metastatic melanoma – analysis of the DeCOG prospective multicenter cohort study ADOREG/TRIMResearch in context
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Jan-Malte Placke, Mona Kimmig, Klaus Griewank, Rudolf Herbst, Patrick Terheyden, Jochen Utikal, Claudia Pföhler, Jens Ulrich, Alexander Kreuter, Peter Mohr, Ralf Gutzmer, Friedegund Meier, Edgar Dippel, Julia Welzel, Daniel Robert Engel, Sophia Kreft, Antje Sucker, Georg Lodde, Frederik Krefting, Ingo Stoffels, Joachim Klode, Alexander Roesch, Lisa Zimmer, Elisabeth Livingstone, Eva Hadaschik, Jürgen C. Becker, Michael Weichenthal, Alpaslan Tasdogan, Dirk Schadendorf, and Selma Ugurel
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Melanoma ,Tumor PD-L1 ,Biomarker ,Immune checkpoint inhibition ,Therapy outcome ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: PD-1-based immune checkpoint inhibition (ICI) is the major backbone of current melanoma therapy. Tumor PD-L1 expression represents one of few biomarkers predicting ICI therapy outcome. The objective of the present study was to systematically investigate whether the type of tumor tissue examined for PD-L1 expression has an impact on the correlation with ICI therapy outcome. Methods: Pre-treatment tumor tissue was collected within the prospective DeCOG cohort study ADOREG/TRIM (CA209-578; NCT05750511) between February 2014 and May 2020 from 448 consecutive patients who received PD-1-based ICI for non-resectable metastatic melanoma. The primary study endpoint was best overall response (BOR), secondary endpoints were progression-free (PFS) and overall survival (OS). All endpoints were correlated with tumor PD-L1 expression (quantified with clone 28–8; cutoff ≥5%) and stratified by tissue type. Findings: Tumor PD-L1 was determined in 95 primary tumors (PT; 36.8% positivity), 153 skin/subcutaneous (34.0% positivity), 115 lymph node (LN; 50.4% positivity), and 85 organ (40.8% positivity) metastases. Tumor PD-L1 correlated with BOR if determined in LN (OR = 0.319; 95% CI = 0.138–0.762; P = 0.010), but not in skin/subcutaneous metastases (OR = 0.656; 95% CI = 0.311–1.341; P = 0.26). PD-L1 positivity determined on LN metastases was associated with favorable survival (PFS, HR = 0.490; 95% CI = 0.310–0.775; P = 0.002; OS, HR = 0.519; 95% CI = 0.307–0.880; P = 0.014). PD-L1 positivity determined in PT (PFS, HR = 0.757; 95% CI = 0.467–1.226; P = 0.27; OS; HR = 0.528; 95% CI = 0.305–0.913; P = 0.032) was correlated with survival to a lesser extent. No relevant survival differences were detected by PD-L1 determined in skin/subcutaneous metastases (PFS, HR = 0.825; 95% CI = 0.555–1.226; P = 0.35; OS, HR = 1.083; 95% CI = 0.698–1.681; P = 0.72). Interpretation: For PD-1-based immunotherapy in melanoma, tumor PD-L1 determined in LN metastases was stronger correlated with therapy outcome than that assessed in PT or organ metastases. PD-L1 determined in skin/subcutaneous metastases showed no outcome correlation and therefore should be used with caution for clinical decision making. Funding: Bristol-Myers Squibb (ADOREG/TRIM, NCT05750511); German Research Foundation (DFG; Clinician Scientist Program UMEA); Else Kröner-Fresenius-Stiftung (EKFS; Medical Scientist Academy UMESciA).
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- 2023
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23. The role of hyaluronan in endothelial glycocalyx and potential preventative lifestyle strategy with advancing age
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Lim, Jisok, primary, Machin, Daniel Robert, additional, and Donato, Anthony John, additional
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- 2023
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24. Compact Walks: Taming Knowledge-Graph Embeddings with Domain- and Task-Specific Pathways.
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Pei-Yu Hou, Daniel Robert Korn, Cleber C. Melo-Filho, David R. Wright 0001, Alexander Tropsha, and Rada Chirkova
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- 2022
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25. Sexual health outcomes in sexual minority vs. heterosexual men after prostate radiotherapy.
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Dickstein, Daniel Robert, primary, Kapouranis, Thodoris, additional, Flynn, Kathryn E., additional, Sigel, Keith Magnus, additional, Nvepu, Eva, additional, Sheu, Ren-Dih, additional, Stewart, Robert, additional, Wheldon, Christopher, additional, O’Donnell, Riona, additional, Safer, Joshua D., additional, Sfakianos, John P., additional, Galsky, Matt D., additional, Liu, Tian, additional, Rosser, B. R. Simon, additional, Rosenstein, Barry, additional, Jackson, Andrew, additional, Lovelock, Michael, additional, Stock, Richard, additional, Goodman, Karyn A., additional, and Marshall, Deborah Catherine, additional
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- 2024
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26. Author Correction: Like-minded sources on Facebook are prevalent but not polarizing
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Nyhan, Brendan, Settle, Jaime, Thorson, Emily, Wojcieszak, Magdalena, Barberá, Pablo, Chen, Annie Y., Allcott, Hunt, Brown, Taylor, Crespo-Tenorio, Adriana, Dimmery, Drew, Freelon, Deen, Gentzkow, Matthew, González-Bailón, Sandra, Guess, Andrew M., Kennedy, Edward, Kim, Young Mie, Lazer, David, Malhotra, Neil, Moehler, Devra, Pan, Jennifer, Thomas, Daniel Robert, Tromble, Rebekah, Rivera, Carlos Velasco, Wilkins, Arjun, Xiong, Beixian, de Jonge, Chad Kiewiet, Franco, Annie, Mason, Winter, Stroud, Natalie Jomini, and Tucker, Joshua A.
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- 2023
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27. The role of acoustics within the sensory landscape of coral larval settlement
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Josh W. Pysanczyn, Elizabeth A. Williams, Emelie Brodrick, Daniel Robert, Jamie Craggs, Kristen L. Marhaver, and Stephen D. Simpson
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coral reefs ,bioacoustics ,phonotaxis ,laser doppler vibrometry ,restoration ,acoustic enrichment ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Recruitment of coral larvae on reefs is crucial for individual survival and ecosystem integrity alike. Coral larvae can detect and respond to a wide range of biotic and abiotic cues, including acoustic cues, to locate suitable sites for settlement and metamorphosis. However, the acoustic ecology of coral larvae, including how they perceive auditory cues, remains poorly understood. In this mini-review we consider both ex situ physiology and behavior, and in situ ecological and behavioral studies, to first provide an updated overview of the abiotic and biotic cues used by coral larvae to guide settlement. We then explore in detail the use of acoustic cues and the current literature on behavioral responses to acoustic stimuli. Finally, we discuss gaps in our understanding of the mechanisms by which coral larvae detect acoustic cues, highlighting a novel application of technology to explore these sensory capabilities. We also address how larval phonotaxis, i.e., the ability to orient to a sound cue, can be applied to coral reef conservation. Current research suggests that acoustic cues are likely used at small spatial scales, and that coral larvae may have directional acoustic sensitivity enabling phonotactic behavior. Recruitment of coral larvae on reefs is significantly influenced by habitat-specific soundscape variation and likely affected by anthropogenic disturbance. We propose a novel application of the remote sensing technology, micro-scanning laser Doppler vibrometry (LDV), to quantify the micromechanical responses of putative acoustically sensitive epidermal microstructures. We then highlight the potential for incorporation of acoustic enrichment techniques in coral reef conservation and restoration interventions.
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- 2023
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28. IMPLEMENTAÇÃO DA SISTEMATIZAÇÃO DAS ATIVIDADES MULTIPROFISSIONAIS NA SALA DE REANIMAÇÃO NEONATAL
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Araujo, Danessa Silva, primary, Freire, Naruna Mesquita, additional, Dourado, Suzana Portilho Amaral, additional, Dourado, Daniel Robert de jesus Almeida, additional, Oliveira, Silvana do Socorro Santos de, additional, Miranda, Gabriela Ramos, additional, Medeiros, Maria José de Sousa, additional, Loureiro, Maria Almira Bulcão, additional, Freitas, Francisca Maria da Silva, additional, Silva, Nubia Regina Pereira da, additional, Santos, Geraldo Viana, additional, and Vale, Rosiane Costa, additional
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- 2022
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29. The manuscript poetry of Thomas St Nicholas and the writing of 'scripturalism' in seventeenth-century England
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Daniel, Robert W.
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821 ,PR English literature - Abstract
This thesis examines the manuscript poems of Thomas St Nicholas (bap. 1602, d. 1668). His poetry is examined through the writing of 'scripturalism' in seventeenth-century England. I argue that 'scripturalism' was a literary trend in print and manuscript, prose and verse that shared the same scriptures to convey mutual religious, social and political values. St Nicholas' poetry engages with, as it exemplifies, this paradigm of writing. Chapter One investigates St Nicholas' Civil War prison verse epistle alongside Foxe's Acts and Monuments (1563) and prison narratives of the seventeenth century. His poem was part of a literary culture of prison writing that used shared scenes of suffering to connect present persecutions via a Protestant past. Chapter Two explores St Nicholas' hymn of recovery from sickness. His account of illness shares much with scriptural acts and attitudes widely performed and recorded in the early modern sick-chamber. Chapter Three looks at the psalm paraphrases used in his prison verse. It shows St Nicholas invoking certain psalms that were widely used by other parliamentarian preachers and poets to justify the war as just and righteous. Chapter Four examines St Nicholas' battle hymn composed during the First Anglo-Dutch War (1652-1654). I demonstrate his contribution to a recognised form of parliamentarian victory praise which used battle hymns to trumpet military victories using key scriptural texts and images. Chapter Five explores St Nicholas' poem on the Great Fire of London (1666). By examining other urban fire narratives, a shared Biblicism emerges, whereby pulpiteers and balladeers were more united than divided when moralising these horrific events. This thesis argues that St Nicholas' poetry is evidence of a pervasive literary culture that used the Bible cross-denominationally, and occasionally cross-politically. Scripture provided a common reference for writers like him to describe both everyday and extraordinary occurrences.
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- 2018
30. Exploring the role of Leucine Rich Repeat Kinase 2 within the innate immune system
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Levy, Daniel Robert Siegfried and Gay, Nicholas John
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616.8 ,immunology ,Parkinson's disease ,neurodegeneration - Abstract
Leucine rich repeat kinase 2 (LRRK2) is a 286 kDa protein expressed in a variety of tissues and cell types, including neuronal tissue and innate immune cells. Mutations in LRRK2 have been linked to inflammatory diseases, most notably Crohn’s disease and Parkinson’s disease. Further to this, LRRK2 expression is induced by innate immune stimuli, and can be phosphorylated by Myd88 directed TLR signalling. Functional experiments were performed using macrophages from WT and LRRK2 knockout mice. Many phenotypes and interactions have been described for LRRK2 in a neuronal or in vitro context; therefore experiments in macrophages were specifically designed to investigate these phenotypes and interactions in an innate immune context. LRRK2 interacts with a range of small GTPase proteins called Rabs, which coordinate and carry out vesicular trafficking, including that of innate immune receptors. Further interactions have been shown with clathrin-mediated endocytic machinery and phagocytic machinery; including cytoskeletal components actin and tubulin. Accordingly, the role of LRRK2 in the expression, membrane localisation, and ligand-induced endocytosis of the innate immune receptors such as TLR4 were assayed. TLR4 plays an important role in immune responses to alpha-synuclein, an immunogenic protein aggregate that accumulates as part of Parkinson’s disease pathology, making it a particularly interesting target for this assay. No effect was shown for LRRK2 on TLR4 expression or receptor mediated endocytosis, so attention was focused upon LRRK2 cytoskeletal interactions. An unclear role of LRRK2 has been described in phagocytosis. Application of LRRK2 KO macrophages in a series of systematic phagocytosis assays was used to demonstrate and clarify that there is no role of LRRK2 in the phagocytosis of simple beads, opsonised material, or complex bacterial targets expressing a range of immunogenic molecules such as LPS. A genome wide approach was applied to further investigate the role of LRRK2 in TLR4 mediated signalling, as well as NOD2 mediated signalling. Comparison of LPS responses between WT and LRRK2 KO genotype macrophages identified a role of LRRK2 in modulating transcription of a range of chemokines and chemokine receptors. This indicates a specific role of LRRK2 in regulating chemotaxis in LPS stimulated cells. Knockout of LRRK2 resulted in a complete reversal of the regulation of the expression of EPAC1, a cAMP inducible protein working in parallel with a previously described LRRK2 interacting protein PKA. EPAC1 acts, at least in part, via Ca2+ signalling. Modulation of signalling through pathways such as Ca2+, Wnt and cAMP appear as a theme in results described in this transcriptomic experiment. A parallel metabolomic approach allowed analysis of ceramide levels in resting and innate immune stimulated macrophages. Ceramides are lipid molecules able to activate the NLRP3 inflammasome, as well as modulate alpha-synuclein pathology via ceramide metabolomic products. In contrast to results described in neuronal tissue, LRRK2 has no effect on ceramide levels in resting macrophages, however stimulation of NOD2 via MDP resulted in a dramatic LRRK2 specific increase in ceramide levels. Together, these results indicate a role of LRRK2 in activated innate immune cells.
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- 2018
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31. Heterogeneous reactions involving HO2 radicals and atmospheric aerosols
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Moon, Daniel Robert, Heard, D. E., and Seakins, P. W.
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540 - Abstract
The hydroxyl radical (OH), along with the closely coupled species the hydroperoxyl radical (HO2), have a profound effect on the concentration and distribution of most trace atmospheric species associated with climate change and poor air quality as they are essential to the daytime oxidizing capacity of the atmosphere. Tropospheric and mesospheric models that only consider gas-phase chemistry often over predict concentrations of HO2 indicating that heterogeneous reactions with aerosols could be a possible sink. In order to investigate the kinetics of such reactions, the HO2 uptake coefficient (γ(HO2), i.e. the probability that HO2 will collide and react within or on the surface of an aerosol) has been measured onto a variety of aerosols applicable to the troposphere, stratosphere and mesosphere using an aerosol flow tube experiment coupled to a highly sensitive HO2 detector, known as Fluorescence Assay by Gas Expansion (FAGE), and a Scanning Mobility Particle Sizer (SMPS). Deliquesced inorganic aerosols containing transition metal ions (TMI) have been shown to react rapidly with HO2. Measurements of γ(HO2) onto deliquesced inorganic aerosols doped with different concentrations of Cu(II), Fe(II), Mn(II), mixtures of Cu(II) and Fe(II) and I- are presented within this work. HO2 uptake onto deliquesced inorganic aerosols doped with transition metal ions may not be as significant as previously thought. The Thornton expression, used in global modelling studies of HO2 uptake, can predict γ(HO2) at a relative humidity (RH) of 65%, however at a RH of 43%, near the efflorescence point ((NH4)2SO4 = 37%), good agreement was only observed at higher concentrations of Cu(II) and Fe(II) (> 0.1 M) possibly indicating that HO2 solubility decreases as HO2 diffuses further into the bulk of the aerosol. It was expected that as deliquesced NaCl aerosols have a higher pH (7) that most HO2 accommodated within the aerosols will dissociated to the more reactive species O2-. This should result in high values of γ(HO2), however γ(HO2) onto Cu(II)-doped NaCl aerosols was measured to be lower than γ(HO2) onto Cu(II)-doped (NH4)2SO4 aerosols with a lower pH, possibly due to the formation of [Cu(Cl)4]2- complexes which are repelled into the bulk of the aerosol by enhanced concentrations of Cl- ions within the interfacial layer. Measurements of γ(HO2) onto Fe(II)-doped NaCl aerosols were relatively high and agreed with predictions made by the Thornton expression. When irradiated with UVA light, γ(HO2) onto Cu(II)-doped (NH4)2SO4 was lowered, however γ(HO2) onto Cu(II)-doped NaCl remained the same. When the effect of irradiating Fe(II)-doped (NH4)2SO4 aerosols on γ(HO2) was investigated, results indicated possible production of OH. Measurements of γ(HO2) onto mixed Cu(II) and Fe(II)-doped (NH4)2SO4 aerosols could not verify the Mao hypothesis that an electron transfer reaction occurs between Cu(I) and Fe(III) resulting in the conversion of HO2 to H2O, rather than H2O2. However, values of γ(HO2) did not simply equal the sum of γ(HO2) onto Cu or Fe-doped aerosols individually, indicating that the presence of both TMI in the aerosol does alter the chemistry of the aerosol in some way. Irradiation of Cu(II) and Fe(II)-doped aerosols resulted in an enhancement of γ(HO2), possibly indicating an alternative mechanism than that proposed by Mao, where HO2 is converted to H2O via a photochemical mechanism. The presence of I- within NaCl aerosols does not result in a change of γ(HO2), however when converted to I2 by reaction with Cu(II) an enhancement of γ(HO2) greater than when doped with Cu(II) alone was observed Measurements of γ(HO2) onto TiO2, a possible candidate aerosol for use within solar-radiation management (SRM) schemes, showed a positive dependence on Relative Humidity (RH) which correlated with the number of monolayers of water adsorbed onto the TiO2 nanoparticle. This dependence suggests a mechanism by which HO2 adsorbs to the surface of the TiO2 particle by forming complexes with water molecules bound to bridging OH groups. The TOMCAT chemical transport model was used by Professor Chipperfield to predict the possible effects of HO2 uptake (using an upper limit of γ(HO2) = 1) onto the surface of TiO2 nanoparticles on the stratospheric concentrations of HO2 and O3. The amount of TiO2 used was chosen to achieve a similar cooling to that following the Mt. Pinatubo eruption, but the model predicted a very small loss of both stratospheric HO2 and O3. Upon illumination of airborne TiO2 nanoparticles with UV light, significant quantities of HO2 was formed within the gas-phase, thought to be the first direct observations of radicals emitted from the surface of airborne particles. The reaction is dependent on the presence of gas-phase O2 and H2O within the system. The production of HO2 was shown to slow down as a function of time irradiated pointing towards a photochemical aging process occurring on the surface of the TiO2 particles. The dependence of HO2 production on O2 and H2O concentrations was determined, which shows a typical Langmuir adsorption saturation curve for O2 suggesting it is the gas-phase reactant in this process. The addition of H2O into the system inhibits the reaction and reduces the adsorption equilibrium coefficient for both species. Reduction of O2 by photogenerated electrons is likely to be the initial step in this process followed by reaction with a proton. Hydrogen extraction from hydroxyl bridging groups (OHbr) groups by O2- could explain the slow down observed in the rate of HO2 production. Production of gas-phase OH radicals was investigated and showed OH was produced only when large concentrations of TiO2 aerosols entered the aerosol flow tube, probably associated with the decomposition of H2O2 formed from reactive uptake. Although the production of HO2 by TiO2 aerosols initially would not be advantageous for its use within SRM schemes, the reaction ceases upon prolonged photocatalytic aging of the aerosol surface. Meteoric smoke particles (MSP) provide the only significant surfaces within the mesosphere for heterogeneous reactions to occur. To investigate whether such reactions could, in some part, be responsible for the ‘HOx Dilemma’ measurements of γ(HO2) onto analogues of MSP, forsterite, olivine and fayalite, were conducted at a RH of 10%. These experiments showed forsterite to have the lowest reactivity with HO2, similar to that of effloresced inorganic aerosols, and olivine and fayalite to have a similar reactivity that was more than an order of magnitude greater than that of forsterite, thus demonstrating that the presence of Fe within the MSP is required for significant reactivity with HO2. Electronic structure calculations, conducted by Professor Plane, predicts that the difference in reactivity is associated mechanistic and energetic differences between the binding of HO2 to Fe and Mg sites, however, the positive dependence of γ(HO2) with RH and similar values of γ(HO2) for olivine and fayalite suggests that OH bridging groups or complexing with water molecules adsorbed to such sites, as with TiO2 nanoparticles, are adsorption sites for HO2. Taking the measurements made in this work and the likely dependence of γ(HO2) on temperature and RH, a value of 0.2 for γ(HO2) was applied by Dr Sandy James in WACCM-CARMA. This modelling study predicted reductions in the HO2 volume mixing ratio of up to 40% in the polar vortex. Impact to HO2 budgets in the mesosphere was found to be dependent on latitude, giving agreement with the presence of MSPs in the polar night.
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- 2018
32. Proteome Analysis of Thyroid Hormone Transporter Mct8/Oatp1c1-Deficient Mice Reveals Novel Dysregulated Target Molecules Involved in Locomotor Function
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Devon Siemes, Pieter Vancamp, Boyka Markova, Philippa Spangenberg, Olga Shevchuk, Bente Siebels, Hartmut Schlüter, Steffen Mayerl, Heike Heuer, and Daniel Robert Engel
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T4 ,T3 ,Slc16a2 ,Slco1c1 ,CNS ,myelination ,Cytology ,QH573-671 - Abstract
Thyroid hormone (TH) transporter MCT8 deficiency causes severe locomotor disabilities likely due to insufficient TH transport across brain barriers and, consequently, compromised neural TH action. As an established animal model for this disease, Mct8/Oatp1c1 double knockout (DKO) mice exhibit strong central TH deprivation, locomotor impairments and similar histo-morphological features as seen in MCT8 patients. The pathways that cause these neuro-motor symptoms are poorly understood. In this paper, we performed proteome analysis of brain sections comprising cortical and striatal areas of 21-day-old WT and DKO mice. We detected over 2900 proteins by liquid chromatography mass spectrometry, 67 of which were significantly different between the genotypes. The comparison of the proteomic and published RNA-sequencing data showed a significant overlap between alterations in both datasets. In line with previous observations, DKO animals exhibited decreased myelin-associated protein expression and altered protein levels of well-established neuronal TH-regulated targets. As one intriguing new candidate, we unraveled and confirmed the reduced protein and mRNA expression of Pde10a, a striatal enzyme critically involved in dopamine receptor signaling, in DKO mice. As altered PDE10A activities are linked to dystonia, reduced basal ganglia PDE10A expression may represent a key pathogenic pathway underlying human MCT8 deficiency.
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- 2023
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33. Multimodal intrathecal analgesia (MITA) with morphine for reducing postoperative opioid use and acute pain following hepato-pancreato-biliary surgery: A multicenter retrospective study.
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Vidhura Ratnasekara, Laurence Weinberg, Samuel Anthony Johnston, Luke Fletcher, Patrick Nugraha, Daniel Robert Anthony Cox, Raymond Hu, Ilonka Meyer, Osamu Yoshino, Marcos Vinius Perini, Vijayaragavan Muralidharan, Mehrdad Nikfarjam, and Dong-Kyu Lee
- Subjects
Medicine ,Science - Abstract
IntroductionThe optimal analgesic modality for patients undergoing hepato-pancreato-biliary (HPB) surgery remains unknown. The analgesic effects of a multimodal intrathecal analgesia (MITA) technique of intrathecal morphine (ITM) in combination with clonidine and bupivacaine compared to ITM alone have not been investigated in these patients.MethodsWe performed a multicenter retrospective study of patients undergoing complex HPB surgery who received ITM, bupivacaine, and clonidine (MITA group) or ITM-only (ITM group) as part of their perioperative analgesia strategy. The primary outcome was the unadjusted oral morphine equivalent daily dose (oMEDD) in milligrams on postoperative day 1. After adjusting for age, body mass index, hospital allocation, type of surgery, operation length, and intraoperative opioid use, postoperative oMEDD use was investigated using a bootstrapped quantile regression model. Other prespecified outcomes included postoperative pain scores, opioid-related adverse events, major complications, and length of hospital stay.ResultsIn total, 118 patients received MITA and 155 patients received ITM-only. The median (IQR) cumulative oMEDD use on postoperative day 1 was 20.5 mg (8.6:31.0) in the MITA group and 52.1 mg (18.0:107.0) in the ITM group (P < 0.001). There was a variation in the magnitude of the difference in oMEDD use between the groups for different quartiles. For the MITA group, on postoperative day 1, patients in the 25th percentile required 14.0 mg less oMEDD (95% CI: -25.9 to -2.2; P = 0.025), patients in the 50th percentile required 27.8 mg less oMEDD (95% CI: -49.7 to -6.0; P = 0.005), and patients in the 75th percentile required 38.7 mg less oMEDD (95% CI: -72.2 to -5.1; P = 0.041) compared to patients in the same percentile of the ITM group. Patients in the MITA group had significantly lower pain scores in the postoperative recovery unit and on postoperative days 1 to 3. The incidence of postoperative respiratory depression was low (ConclusionIn patients undergoing complex HPB surgery, the use of MITA, consisting of ITM in combination with intrathecal clonidine and bupivacaine, was associated with reduced postoperative opioid use and resulted in superior postoperative analgesia without risk of respiratory depression when compared to patients who received ITM alone. A randomized prospective clinical trial investigating these two intrathecal analgesic techniques is justified.
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- 2023
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34. In-depth analysis of T cell immunity and antibody responses in heterologous prime-boost-boost vaccine regimens against SARS-CoV-2 and Omicron variant
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Natalie Heinen, Corinna Sophie Marheinecke, Clara Bessen, Arturo Blazquez-Navarro, Toralf Roch, Ulrik Stervbo, Moritz Anft, Carlos Plaza-Sirvent, Sandra Busse, Mara Klöhn, Jil Schrader, Elena Vidal Blanco, Doris Urlaub, Carsten Watzl, Markus Hoffmann, Stefan Pöhlmann, Matthias Tenbusch, Eike Steinmann, Daniel Todt, Carsten Hagenbeck, Gert Zimmer, Wolfgang Ekkehard Schmidt, Daniel Robert Quast, Nina Babel, Ingo Schmitz, and Stephanie Pfänder
- Subjects
COVID-19 ,vaccine ,immunity ,SARS-CoV-2 ,omicron ,Immunologic diseases. Allergy ,RC581-607 - Abstract
With the emergence of novel Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Variants of Concern (VOCs), vaccination studies that elucidate the efficiency and effectiveness of a vaccination campaign are critical to assess the durability and the protective immunity provided by vaccines. SARS-CoV-2 vaccines have been found to induce robust humoral and cell-mediated immunity in individuals vaccinated with homologous vaccination regimens. Recent studies also suggest improved immune response against SARS-CoV-2 when heterologous vaccination strategies are employed. Yet, few data exist on the extent to which heterologous prime-boost-boost vaccinations with two different vaccine platforms have an impact on the T cell-mediated immune responses with a special emphasis on the currently dominantly circulating Omicron strain. In this study, we collected serum and peripheral blood mononuclear cells (PBMCs) from 57 study participants of median 35-year old’s working in the health care field, who have received different vaccination regimens. Neutralization assays revealed robust but decreased neutralization of Omicron VOC, including BA.1 and BA.4/5, compared to WT SARS-CoV-2 in all vaccine groups and increased WT SARS-CoV-2 binding and neutralizing antibodies titers in homologous mRNA prime-boost-boost study participants. By investigating cytokine production, we found that homologous and heterologous prime-boost-boost-vaccination induces a robust cytokine response of CD4+ and CD8+ T cells. Collectively, our results indicate robust humoral and T cell mediated immunity against Omicron in homologous and heterologous prime-boost-boost vaccinated study participants, which might serve as a guide for policy decisions.
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- 2022
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35. “Love looks not with the eyes”: supranormal processing of emotional speech in individuals with late-blindness versus preserved processing in individuals with congenital-blindness
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Ben-David, Boaz M., primary, Chebat, Daniel-Robert, additional, and Icht, Michal, additional
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- 2024
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36. A quantitative assessment of Geant4 for predicting the yield and distribution of positron-emitting fragments in ion beam therapy
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Chacon, Andrew, primary, Rutherford, Harley, additional, Mohammadi, Akram, additional, Nitta, Munetaka, additional, Nishikido, Fumihiko, additional, Iwao, Yuma, additional, Tashima, Hideaki, additional, Yoshida, Eiji, additional, Akamatsu, Go, additional, Takyu, Sodai, additional, Kang, Han Gyu, additional, Franklin, Daniel Robert, additional, Parodi, Katia, additional, Yamaya, Taiga, additional, Rosenfeld, Anatoly B, additional, Guatelli, Susanna, additional, and Safavi-Naeini, Mitra, additional
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- 2024
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37. Changes in Dangerous and Competitive Worldviews During the Coronavirus Epidemic: Evidence from a Large-Scale U.S. Panel Study
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Syropoulos, Stylianos, primary, Mah, Andrea, additional, Dixon-Gordon, Katherine L., additional, Markowitz, Ezra, additional, Nteta, Tatishe M., additional, Reid, Allecia, additional, Ginn, Joel, additional, Suh, Se Min, additional, Ames, Daniel Robert, additional, and Lickel, Brian, additional
- Published
- 2024
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38. Analysis of diagnostic test outcomes in a large loiasis cohort from an endemic region: Serological tests are often false negative in hyper-microfilaremic infections
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Veletzky, Luzia, primary, Eberhardt, Kirsten Alexandra, additional, Hergeth, Jennifer, additional, Stelzl, Daniel Robert, additional, Zoleko Manego, Rella, additional, Kreuzmair, Ruth, additional, Burger, Gerrit, additional, Mischlinger, Johannes, additional, McCall, Matthew B. B., additional, Mombo-Ngoma, Ghyslain, additional, Adegnika, Ayôla Akim, additional, Agnandji, Selidji Todagbe, additional, Matsiegui, Pierre Blaise, additional, Lell, Bertrand, additional, Kremsner, Peter, additional, Mordmüller, Benjamin, additional, Tappe, Dennis, additional, and Ramharter, Michael, additional
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- 2024
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39. Hybrid TOA/AOA Localization with 1D Angle Estimation in UAV-assisted WSN.
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Anh Tuyen Le, Le Chung Tran, Xiaojing Huang 0001, Christian Ritz 0001, Eryk Dutkiewicz, Abdesselam Bouzerdoum, and Daniel Robert Franklin
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- 2020
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40. Listening to the Fur Trade: Soundways and Music in the British North American Fur Trade, 1760–1840
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Daniel Robert Laxer
- Published
- 2022
41. The young and the reckless: Social and physical warning messages reduce dangerous driving behavior in a simulator
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Chebat, Daniel-Robert, Lemarié, Linda, Rotnemer, Batya, Talbi, Tzviel, and Wagner, Michael
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- 2021
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42. Jean-Charles Shalom Chebat, (1945–2019) z’’l: An intimate perspective into his life
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Gélinas-Chebat, Claire, Chebat, Daniel-Robert, Chebat, Myriam-Ève, and Chebat, Élise-Rachel
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- 2021
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43. Reduced-parameter motion estimation in PET using respiratory motion models
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Balfour, Daniel Robert Malcolm, King, Andrew Peter, and Marsden, Paul Kenneth
- Subjects
616.07 - Abstract
Positron emission tomography (PET) is a modality with high temporal resolution but long acquisition times. This can result in blurred images due to subject motion. Respiratory motion in particular is an unavoidable source of degradation, which can cause issues with quantification and clinical interpretation. An important characteristic of respiratory motion is its pseudo-cyclic nature, which has previously been exploited to form mathematical models which describe the motion, driven by a small number of parameters. The aim of this project is to use this form of motion modelling to estimate motion using information acquired from both dynamic magnetic resonance (MR) scans and from the acquired PET data itself to correct for the effects of motion. The use of motion models in this way can overcome the high levels of noise which otherwise characterise the estimation problem. First the feasibility of using motion models is investigated using synthetic data consisting of individual PET gates simulated using real motion information. The PET gates are registered using constraints provided by a motion model derived from MR images. A novelty of this approach is that this is the first time PET data have been used to indirectly drive a parameterised motion model. The next part of the project attempts to formalise the motion estimation process by incorporating the reduced-parameter motion model into the PET image reconstruction. An analytical gradient for a single motion parameter that drives the model is derived from the same objective function used to estimate the image. This results in significant noise averaging, providing robustness to the high level of noise typically found in PET data acquired over short time frames. This is shown to improve robustness to noise well enough that the number of gates can be increased and overall motion correction performance improved. Finally, the formulation is extended further to also model photon attenuation effects. This is shown to improve the performance of the algorithm when dealing with synthetic data that includes attenuation.
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- 2017
44. Gyrification in relation to cortical thickness in the congenitally blind
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Isabel Arend, Kenneth Yuen, Or Yizhar, Daniel-Robert Chebat, and Amir Amedi
- Subjects
vision ,voxel-based morphometry ,MRI ,cortical thickness ,gyrification ,congenital blindness ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Greater cortical gyrification (GY) is linked with enhanced cognitive abilities and is also negatively related to cortical thickness (CT). Individuals who are congenitally blind (CB) exhibits remarkable functional brain plasticity which enables them to perform certain non-visual and cognitive tasks with supranormal abilities. For instance, extensive training using touch and audition enables CB people to develop impressive skills and there is evidence linking these skills to cross-modal activations of primary visual areas. There is a cascade of anatomical, morphometric and functional-connectivity changes in non-visual structures, volumetric reductions in several components of the visual system, and CT is also increased in CB. No study to date has explored GY changes in this population, and no study has explored how variations in CT are related to GY changes in CB. T1-weighted 3D structural magnetic resonance imaging scans were acquired to examine the effects of congenital visual deprivation in cortical structures in a healthy sample of 11 CB individuals (6 male) and 16 age-matched sighted controls (SC) (10 male). In this report, we show for the first time an increase in GY in several brain areas of CB individuals compared to SC, and a negative relationship between GY and CT in the CB brain in several different cortical areas. We discuss the implications of our findings and the contributions of developmental factors and synaptogenesis to the relationship between CT and GY in CB individuals compared to SC. F.
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- 2022
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45. Neural substrates of spatial processing and navigation in blindness: An activation likelihood estimation meta-analysis
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Maxime Bleau, Samuel Paré, Daniel-Robert Chebat, Ron Kupers, Joseph Paul Nemargut, and Maurice Ptito
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visual impairments and blindness ,spatial navigation ,spatial processing ,neuroplasticity ,amodality ,neuroimaging ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Even though vision is considered the best suited sensory modality to acquire spatial information, blind individuals can form spatial representations to navigate and orient themselves efficiently in space. Consequently, many studies support the amodality hypothesis of spatial representations since sensory modalities other than vision contribute to the formation of spatial representations, independently of visual experience and imagery. However, given the high variability in abilities and deficits observed in blind populations, a clear consensus about the neural representations of space has yet to be established. To this end, we performed a meta-analysis of the literature on the neural correlates of spatial processing and navigation via sensory modalities other than vision, like touch and audition, in individuals with early and late onset blindness. An activation likelihood estimation (ALE) analysis of the neuroimaging literature revealed that early blind individuals and sighted controls activate the same neural networks in the processing of non-visual spatial information and navigation, including the posterior parietal cortex, frontal eye fields, insula, and the hippocampal complex. Furthermore, blind individuals also recruit primary and associative occipital areas involved in visuo-spatial processing via cross-modal plasticity mechanisms. The scarcity of studies involving late blind individuals did not allow us to establish a clear consensus about the neural substrates of spatial representations in this specific population. In conclusion, the results of our analysis on neuroimaging studies involving early blind individuals support the amodality hypothesis of spatial representations.
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- 2022
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46. Distinct loiasis infection states and associated clinical and hematological manifestations in patients from Gabon.
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Luzia Veletzky, Kirsten Alexandra Eberhardt, Jennifer Hergeth, Daniel Robert Stelzl, Rella Zoleko Manego, Ghyslain Mombo-Ngoma, Ruth Kreuzmair, Gerrit Burger, Ayôla Akim Adegnika, Selidji Todagbe Agnandji, Pierre Blaise Matsiegui, Michel Boussinesq, Benjamin Mordmüller, and Michael Ramharter
- Subjects
Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundLoiasis-a filarial disease endemic in Central and West Africa-is increasingly recognized as significant individual and public health concern. While the understanding of the disease characteristics remains limited, significant morbidity and excess mortality have been demonstrated. Here, we characterize clinical and hematological findings in a large cohort from Gabon.MethodsLoiasis-related clinical manifestations and microfilaremia, hemoglobin and differential blood counts were recorded prospectively during a cross-sectional survey. For analysis, participants were categorized into distinct infection states by the diagnostic criteria of eye worm history and microfilaremia.ResultsAnalysis of data from 1,232 individuals showed that occurrence of clinical and hematological findings differed significantly between the infection states. Eye worm positivity was associated with a wide range of clinical manifestations while microfilaremia by itself was not. Loa loa infection was associated with presence of eosinophilia and absolute eosinophil counts were associated with extent of microfilaremia (p-adj. = 0.012, ß-estimate:0.17[0.04-0.31]).ConclusionsLoiasis is a complex disease, causing different disease manifestations in patients from endemic regions. The consequences for the affected individuals or populations as well as the pathophysiological consequences of correlating eosinophilia are largely unknown. High-quality research on loiasis should be fostered to improve patient care and understanding of the disease.
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- 2022
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47. Exposure–lag response of smoking prevalence on lung cancer incidence using a distributed lag non-linear model
- Author
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Daniel Robert Smith, Alireza Behzadnia, Rabbiaatul Addawiyah Imawana, Muzammil Nahaboo Solim, and Michaela Louise Goodson
- Subjects
Medicine ,Science - Abstract
Abstract The prevalence of smokers is a major driver of lung cancer incidence in a population, though the “exposure–lag” effects are ill-defined. Here we present a multi-country ecological modelling study using a 30-year smoking prevalence history to quantify the exposure–lag response. To model the temporal dependency between smoking prevalence and lung cancer incidence, we used a distributed lag non-linear model (DLNM), controlling for gender, age group, country, outcome year, and population at risk, and presented the effects as the incidence rate ratio (IRR) and cumulative incidence rate ratio (IRRcum). The exposure–response varied by lag period, whilst the lag–response varied according to the magnitude and direction of changes in smoking prevalence in the population. For the cumulative lag–response, increments above and below the reference level was associated with an increased and decreased IRRcum respectively, with the magnitude of the effect varying across the lag period. Though caution should be exercised in interpretation of the IRR and IRRcum estimates reported herein, we hope our work constitutes a preliminary step towards providing policy makers with meaningful indicators to inform national screening programme developments. To that end, we have implemented our statistical model a shiny app and provide an example of its use.
- Published
- 2021
- Full Text
- View/download PDF
48. Proteomic and bioinformatic profiling of neutrophils in CLL reveals functional defects that predispose to bacterial infections
- Author
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Subramaniam, Nirojah, Bottek, Jenny, Thiebes, Stephanie, Zec, Kristina, Kudla, Matthias, Soun, Camille, de Dios Panal, Elena, Lill, Julia K., Pfennig, Aaron, Herrmann, Ralf, Bruderek, Kirsten, Rahmann, Sven, Brandau, Sven, Johansson, Patricia, Reinhardt, Hans Christian, Dürig, Jan, Seiffert, Martina, Bracht, Thilo, Sitek, Barbara, and Engel, Daniel Robert
- Published
- 2021
- Full Text
- View/download PDF
49. Did You Ever See a Dream Walking?
- Author
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McClure, Daniel Robert, primary
- Published
- 2021
- Full Text
- View/download PDF
50. Who Will Survive in America?
- Author
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McClure, Daniel Robert, primary
- Published
- 2021
- Full Text
- View/download PDF
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