199 results on '"Dandan Fan"'
Search Results
2. Air pollution and the mystery of high household savings in China
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Jingwen Ding, Dandan Fan, Yuxia Guo, and Qingqing Ning
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Air pollution ,Household savings rate ,Health risk ,Consumption ,Environment ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Despite consumption being a key measure of residential welfare, the relationship of the residential savings rates, an inverse proxy for household consumption, with air pollution is unclear. This study empirically examines the impact of air pollution on household savings rates, and the underlying mechanism. The results reveal that worsening air pollution significantly increases household savings rates; this finding holds under alternative variable specifications and employing instrumental variables to address endogeneity issues. The mechanism analysis demonstrates that air pollution enhances household savings rates through health risks. Heterogeneity analysis indicates that in developed areas with more comprehensive public medical service systems, the positive effect of air pollution on household savings rates weakens in second-tier cities and above as well as in high-income areas. Furthermore, improvements in commercial insurance coverage mitigates the positive effect of air pollution on household savings rates. Overall, this study explains the high savings phenomenon among Chinese households from an environmental perspective. The Chinese government should encourage the use of renewable energy, improve air pollution control, and reduce the inhibitory effects of air pollution on residential consumption.
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- 2024
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3. Vitamin D-binding protein in plasma microglia-derived extracellular vesicles as a potential biomarker for major depressive disorder
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Gaojia Zhang, Ling Li, Yan Kong, Dandan Xu, Yu Bao, Zhiting Zhang, Zhixiang Liao, Jiao Jiao, Dandan Fan, Xiaojing Long, Ji Dai, Chunming Xie, Zhiqiang Meng, and Zhijun Zhang
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Biomarker ,Cerebrospinal fluid ,Major depressive disorder ,Microglia derived extracellular vesicles ,Vitamin-D binding protein ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
No well-established biomarkers are available for the clinical diagnosis of major depressive disorder (MDD). Vitamin D-binding protein (VDBP) is altered in plasma and postmortem dorsolateral prefrontal cortex (DLPFC) tissues of MDD patients. Thereby, the role of VDBP as a potential biomarker of MDD diagnosis was further assessed. Total extracellular vesicles (EVs) and brain cell-derived EVs (BCDEVs) were isolated from the plasma of first-episode drug-naïve or drug-free MDD patients and well-matched healthy controls (HCs) in discovery (20 MDD patients and 20 HCs) and validation cohorts (88 MDD patients and 38 HCs). VDBP level in the cerebrospinal fluid (CSF) from chronic glucocorticoid-induced depressed rhesus macaques or prelimbic cortex from lipopolysaccharide (LPS)-induced depressed mice and wild control groups was measured to evaluate its relationship with VDBP in plasma microglia-derived extracellular vesicles (MDEVs). VDBP was significantly decreased in MDD plasma MDEVs compared to HCs, and negatively correlated with HAMD-24 score with the highest diagnostic accuracy among BCDEVs. VDBP in plasma MDEVs was decreased both in depressed rhesus macaques and mice. A positive correlation of VDBP in MDEVs with that in CSF was detected in depressed rhesus macaques. VDBP levels in prelimbic cortex microglia were negatively correlated with those in plasma MDEVs in depressed mice. The main results suggested that VDBP in plasma MDEVs might serve as a prospective candidate biomarker for MDD diagnosis.
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- 2024
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4. ANGPTL8 deficiency attenuates lipopolysaccharide-induced liver injury by improving lipid metabolic dysregulation
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Ying Feng, Shan Luo, Chen Fang, Shinan Ma, Dandan Fan, Yanghui Chen, Zhuo Chen, Xiang Zheng, Yijun Tang, Xiaobei Duan, Xingling Liu, Xuzhi Ruan, and Xingrong Guo
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liver injury ,ANGPTL8 ,lipid deposition ,PGC1α/PPARα pathway ,Biochemistry ,QD415-436 - Abstract
Liver injury is closely related to poor outcomes in sepsis patients. Current studies indicate that sepsis is accompanied by metabolic disorders, especially those related to lipid metabolism. It is highly important to explore the mechanism of abnormal liver lipid metabolism during sepsis. As a key regulator of glucose and lipid metabolism, angiopoietin-like 8 (ANGPTL8) is involved in the regulation of multiple chronic metabolic diseases. In the present study, severe liver lipid deposition and lipid peroxidation were observed in the early stages of lipopolysaccharide (LPS) induced liver injury. LPS promotes the expression of ANGPTL8 both in vivo and in vitro. Knockout of Angptl8 reduced hepatic lipid accumulation and lipid peroxidation, improved fatty acid oxidation and liver function, and increased the survival rate of septic mice by activating the PGC1α/PPARα pathway. We also found that the expression of ANGPTL8 induced by LPS depends on TNF-α, and that inhibiting the TNF-α pathway reduces LPS-induced hepatic lipid deposition and lipid peroxidation. However, knocking out Angptl8 improved the survival rate of septic mice better than inhibiting the TNF-α pathway. Taken together, the results of our study suggest that ANGPTL8 functions as a novel cytokine in LPS-induced liver injury by suppressing the PGC1α/PPARα signaling pathway. Therefore, targeting ANGPTL8 to improve liver lipid metabolism represents an attractive strategy for the management of sepsis patients.
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- 2024
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5. Biogeographic survey of soil bacterial communities across Antarctica
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Gilda Varliero, Pedro H. Lebre, Byron Adams, Steven L. Chown, Peter Convey, Paul G. Dennis, Dandan Fan, Belinda Ferrari, Beat Frey, Ian D. Hogg, David W. Hopkins, Weidong Kong, Thulani Makhalanyane, Gwynneth Matcher, Kevin K. Newsham, Mark I. Stevens, Katherine V. Weigh, and Don A. Cowan
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Antarctic Conservation Biogeographic Regions (ACBRs) ,Antarctic soil microbiome ,Biogeography ,Microbial diversity ,Regionalization ,Soils ,Microbial ecology ,QR100-130 - Abstract
Abstract Background Antarctica and its unique biodiversity are increasingly at risk from the effects of global climate change and other human influences. A significant recent element underpinning strategies for Antarctic conservation has been the development of a system of Antarctic Conservation Biogeographic Regions (ACBRs). The datasets supporting this classification are, however, dominated by eukaryotic taxa, with contributions from the bacterial domain restricted to Actinomycetota and Cyanobacteriota. Nevertheless, the ice-free areas of the Antarctic continent and the sub-Antarctic islands are dominated in terms of diversity by bacteria. Our study aims to generate a comprehensive phylogenetic dataset of Antarctic bacteria with wide geographical coverage on the continent and sub-Antarctic islands, to investigate whether bacterial diversity and distribution is reflected in the current ACBRs. Results Soil bacterial diversity and community composition did not fully conform with the ACBR classification. Although 19% of the variability was explained by this classification, the largest differences in bacterial community composition were between the broader continental and maritime Antarctic regions, where a degree of structural overlapping within continental and maritime bacterial communities was apparent, not fully reflecting the division into separate ACBRs. Strong divergence in soil bacterial community composition was also apparent between the Antarctic/sub-Antarctic islands and the Antarctic mainland. Bacterial communities were partially shaped by bioclimatic conditions, with 28% of dominant genera showing habitat preferences connected to at least one of the bioclimatic variables included in our analyses. These genera were also reported as indicator taxa for the ACBRs. Conclusions Overall, our data indicate that the current ACBR subdivision of the Antarctic continent does not fully reflect bacterial distribution and diversity in Antarctica. We observed considerable overlap in the structure of soil bacterial communities within the maritime Antarctic region and within the continental Antarctic region. Our results also suggest that bacterial communities might be impacted by regional climatic and other environmental changes. The dataset developed in this study provides a comprehensive baseline that will provide a valuable tool for biodiversity conservation efforts on the continent. Further studies are clearly required, and we emphasize the need for more extensive campaigns to systematically sample and characterize Antarctic and sub-Antarctic soil microbial communities. Video Abstract
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- 2024
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6. Exploring the role of the disulfidptosis-related gene SLC7A11 in adrenocortical carcinoma: implications for prognosis, immune infiltration, and therapeutic strategies
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Tonghu Liu, Yilin Ren, Qixin Wang, Yu Wang, Zhiyuan Li, Weibo Sun, Dandan Fan, Yongkun Luan, Yukui Gao, and Zechen Yan
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SLC7A11 ,Disulfidptosis ,Adrenocortical carcinoma ,Immune infiltration ,Prognosis ,Metabolic vulnerability ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract Background Disulfidptosis and the disulfidptosis-related gene SLC7A11 have recently attracted significant attention for their role in tumorigenesis and tumour management. However, its association with adrenocortical carcinoma (ACC) is rarely discussed. Methods Differential analysis, Cox regression analysis, and survival analysis were used to screen for the hub gene SLC7A11 in the TCGA and GTEx databases and disulfidptosis-related gene sets. Then, we performed an association analysis between SLC7A11 and clinically relevant factors in ACC patients. Univariate and multivariate Cox regression analyses were performed to evaluate the prognostic value of SLC7A11 and clinically relevant factors. Weighted gene coexpression analysis was used to find genes associated with SLC7A11. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses and the LinkedOmics database were used to analyse the functions of SLC7A11-associated genes. The CIBERSORT and Xcell algorithms were used to analyse the relationship between SLC7A11 and immune cell infiltration in ACC. The TISIDB database was applied to search for the correlation between SLC7A11 expression and immune chemokines. In addition, we performed a correlation analysis for SLC7A11 expression and tumour mutational burden and immune checkpoint-related genes and assessed drug sensitivity based on SLC7A11 expression. Immunohistochemistry and RT‒qPCR were used to validate the upregulation of SLC7A11 in the ACC. Results SLC7A11 is highly expressed in multiple urological tumours, including ACC. SLC7A11 expression is strongly associated with clinically relevant factors (M-stage and MYL6 expression) in ACC. SLC7A11 and the constructed nomogram can accurately predict ACC patient outcomes. The functions of SLC7A11 and its closely related genes are tightly associated with the occurrence of disulfidptosis in ACC. SLC7A11 expression was tightly associated with various immune cell infiltration disorders in the ACC tumour microenvironment (TME). It was positively correlated with the expression of immune chemokines (CXCL8, CXCL3, and CCL20) and negatively correlated with the expression of immune chemokines (CXCL17 and CCL14). SLC7A11 expression was positively associated with the expression of immune checkpoint genes (NRP1, TNFSF4, TNFRSF9, and CD276) and tumour mutation burden. The expression level of SLC7A11 in ACC patients is closely associated withcthe drug sensitivity. Conclusion In ACC, high expression of SLC7A11 is associated with migration, invasion, drug sensitivity, immune infiltration disorders, and poor prognosis, and its induction of disulfidptosis is a promising target for the treatment of ACC.
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- 2023
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7. Connectomics-based resting-state functional network alterations predict suicidality in major depressive disorder
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Qing Wang, Cancan He, Zan Wang, Dandan Fan, Zhijun Zhang, Chunming Xie, and on behalf of REST-meta-MDD Consortium
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Suicidal behavior is a major concern for patients who suffer from major depressive disorder (MDD). However, dynamic alterations and dysfunction of resting-state networks (RSNs) in MDD patients with suicidality have remained unclear. Thus, we investigated whether subjects with different severity of suicidal ideation and suicidal behavior may have different disturbances in brain RSNs and whether these changes could be used as the diagnostic biomarkers to discriminate MDD with or without suicidal ideation and suicidal behavior. Then a multicenter, cross-sectional study of 528 MDD patients with or without suicidality and 998 healthy controls was performed. We defined the probability of dying by the suicide of the suicidality components as a ‘suicidality gradient’. We constructed ten RSNs, including default mode (DMN), subcortical (SUB), ventral attention (VAN), and visual network (VIS). The network connections of RSNs were analyzed among MDD patients with different suicidality gradients and healthy controls using ANCOVA, chi-squared tests, and network-based statistical analysis. And support vector machine (SVM) model was designed to distinguish patients with mild-to-severe suicidal ideation, and suicidal behavior. We found the following abnormalities with increasing suicidality gradient in MDD patients: within-network connectivity values initially increased and then decreased, and one-versus-other network values decreased first and then increased. Besides, within- and between-network connectivity values of the various suicidality gradients are mainly negatively correlated with HAMD anxiety and positively correlated with weight. We found that VIS and DMN-VIS values were affected by age (p
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- 2023
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8. Design of the Monitoring System for Communication Satellite Information Security Based on Spaceborne Network Probe
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Mingjian WANG, Dandan FAN, Xiaoshen XU, and Meng LI
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communication satellite ,space based probe ,information security ,security monitoring ,Information technology ,T58.5-58.64 - Abstract
To enhanced the information security protection capability of communication satellites and solved the information security monitoring problem of the system under the condition of limited on-board resources, based on the comparison of some typical information security protection designs, this paper summarized the characteristics and security threats of the communication satellites, analyzed the constraints on improved security protection capabilities, then proposed a sort of collecting satellite security data by using space based probe technology, built data analysis platform and integrated monitoring system based on the ground system, which could realized the system security status monitoring and security alarm on the premise of ensuring the normal operation of the satellite business and low resource occupancy.At last the actual operation of the system was analyzed and verified.
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- 2023
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9. Effects of congestion charging and subsidy policy on vehicle flow and revenue with user heterogeneity
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Dandan Fan, Dawei Li, Fangzheng Cheng, and Guanghua Fu
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traffic congestion ,private car ,ridesharing car ,public bus ,transit subsidy ,value of time ,Biotechnology ,TP248.13-248.65 ,Mathematics ,QA1-939 - Abstract
Traffic congestion is a major issue in urban traffic networks. Both congestion charging and subsidy policy can solve traffic congestion to some extent, but which one is better? Based on this, this paper constructs a typical transit network consisting of three travel tools in four common travel modes. Travelers' values of time affect their choice of transportation in the congestion network, thus a stochastic user equilibrium model is established by considering travelers' heterogenous values of time to evaluate the effects of different combinations of congestion charging and subsidy policies on vehicle flow and revenue. Numerical results indicate that the effectiveness of congestion charging and subsidy policy in alleviating traffic congestion depends on the object of charging or subsidizing. Congestion charging for private cars can reduce traffic flow and alleviate traffic congestion, but charging for ridesharing cars does not reduce traffic flow and may even cause traffic congestion. Subsidizing public buses does not reduce traffic flow, but it can ease congestion by coordinating traffic flow on both edges of the dual-modal transport. The combination of no subsidy for public buses and charging for both private cars and ridesharing cars can obtain the greatest revenue, but it does not alleviate traffic congestion. Although the combination of charging for private cars and subsidizing public buses does not bring the most benefits, it can reduce traffic flow, and its revenue is also considerable. This study can provide quantitative decision support for the government to ease traffic congestion and improve government revenue.
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- 2023
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10. Partial erosion on under-methylated regions and chromatin reprogramming contribute to oncogene activation in IDH mutant gliomas
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Xinyu Wang, Lijun Dai, Yang Liu, Chenghao Li, Dandan Fan, Yue Zhou, Pengcheng Li, Qingran Kong, and Jianzhong Su
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DNA methylation ,Chromatin ,Oncogene ,IDH mutation ,Glioma ,Genetics ,QH426-470 - Abstract
Abstract Background IDH1/2 hotspot mutations are well known to drive oncogenic mutations in gliomas and are well-defined in the WHO 2021 classification of central nervous system tumors. Specifically, IDH mutations lead to aberrant hypermethylation of under-methylated regions (UMRs) in normal tissues through the disruption of TET enzymes. However, the chromatin reprogramming and transcriptional changes induced by IDH-related hypermethylation in gliomas remain unclear. Results Here, we have developed a precise computational framework based on Hidden Markov Model to identify altered methylation states of UMRs at single-base resolution. By applying this framework to whole-genome bisulfite sequencing data from 75 normal brain tissues and 15 IDH mutant glioma tissues, we identified two distinct types of hypermethylated UMRs in IDH mutant gliomas. We named them partially hypermethylated UMRs (phUMRs) and fully hypermethylated UMRs (fhUMRs), respectively. We found that the phUMRs and fhUMRs exhibit distinct genomic features and chromatin states. Genes related to fhUMRs were more likely to be repressed in IDH mutant gliomas. In contrast, genes related to phUMRs were prone to be up-regulated in IDH mutant gliomas. Such activation of phUMR genes is associated with the accumulation of active H3K4me3 and the loss of H3K27me3, as well as H3K36me3 accumulation in gene bodies to maintain gene expression stability. In summary, partial erosion on UMRs was accompanied by locus-specific changes in key chromatin marks, which may contribute to oncogene activation. Conclusions Our study provides a computational strategy for precise decoding of methylation encroachment patterns in IDH mutant gliomas, revealing potential mechanistic insights into chromatin reprogramming that contribute to oncogenesis.
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- 2023
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11. Sonoactivated Nanomaterials: A potent armament for wastewater treatment
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Jianfeng Bao, Shuangshaung Guo, Dandan Fan, Jingliang Cheng, Yong Zhang, and Xin Pang
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Ultrasonic wastewater treatment ,Nanotechnology ,Environmental pollution ,Nanomaterials ,Chemistry ,QD1-999 ,Acoustics. Sound ,QC221-246 - Abstract
The world is currently facing a critical issue of water pollution, with wastewater being a major contributor. It comes from different types of pollutants, including industrial, medical, agricultural, and domestic. Effective treatment of wastewater requires efficient degradation of pollutants and carcinogens prior to discharge. Commonly used methods for wastewater treatment include filtration, adsorption, biodegradation, advanced oxidation processes, and Fenton oxidation, among others.The sonochemical effect refers to the decomposition, oxidation, reduction, and other reactions of pollutant molecules in wastewater upon ultrasound activation, achieving pollutants removal. Furthermore, the micro-flow effect generated by ultrasonic waves creates tiny bubbles and eddies. This significantly increases the contact area and exchange speed of pollutants and dissolved oxygen, thereby accelerating pollutant degradation. Currently, ultrasonic-assisted technology has emerged as a promising approach due to its strong oxidation ability, simple and cheap equipments, and minimal secondary pollution. However, the use of ultrasound in wastewater treatment has some limitations, such as high energy consumption, lengthy treatment time, limited water treatment capacity, stringent water quality requirements, and unstable treatment effects. To address these issues, the combination of enhanced ultrasound with nanotechnology is proposed and has shown great potential in wastewater treatment. Such a combination can greatly improve the efficiency of ultrasonic oxidation, resulting in an improved performance of wastewater purification. This article presents recent progress in the development of sonoactivated nanomaterials for enhanced wastewater disposal. Such nanomaterials are systematically classified and discussed. Potential challenges and future prospects of this emerging technology are also highlighted.
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- 2023
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12. Sequencing of 19,219 exomes identifies a low-frequency variant in FKBP5 promoter predisposing to high myopia in a Han Chinese population
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Jianzhong Su, Jian Yuan, Liangde Xu, Shilai Xing, Mengru Sun, Yinghao Yao, Yunlong Ma, Fukun Chen, Longda Jiang, Kai Li, Xiangyi Yu, Zhengbo Xue, Yaru Zhang, Dandan Fan, Ji Zhang, Hui Liu, Xinting Liu, Guosi Zhang, Hong Wang, Meng Zhou, Fan Lyu, Gang An, Xiaoguang Yu, Yuanchao Xue, Jian Yang, and Jia Qu
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CP: Genomics ,Biology (General) ,QH301-705.5 - Abstract
Summary: High myopia (HM) is one of the leading causes of visual impairment and blindness worldwide. Here, we report a whole-exome sequencing (WES) study in 9,613 HM cases and 9,606 controls of Han Chinese ancestry to pinpoint HM-associated risk variants. Single-variant association analysis identified three newly identified -genetic loci associated with HM, including an East Asian ancestry-specific low-frequency variant (rs533280354) in FKBP5. Multi-ancestry meta-analysis with WES data of 2,696 HM cases and 7,186 controls of European ancestry from the UK Biobank discerned a newly identified European ancestry-specific rare variant in FOLH1. Functional experiments revealed a mechanism whereby a single G-to-A transition at rs533280354 disrupted the binding of transcription activator KLF15 to the promoter of FKBP5, resulting in decreased transcription of FKBP5. Furthermore, burden tests showed a significant excess of rare protein-truncating variants among HM cases involved in retinal blood vessel morphogenesis and neurotransmitter transport.
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- 2023
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13. Grazing does not influence soil arbuscular mycorrhizal fungal diversity, but increases their interaction complexity with plants in dry grasslands on the Tibetan Plateau
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Dandan Fan, Mukan Ji, Jianshuang Wu, Hao Chen, Hongzeng Jia, Xianzhou Zhang, Xuliang Zhuang, and Weidong Kong
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Grazing ,Arbuscular mycorrhizal fungi ,Plant–microbe interaction ,Community assembly ,Grassland ,Tibetan Plateau ,Ecology ,QH540-549.5 - Abstract
Animal grazing substantially influences soil arbuscular mycorrhizal fungi (AMF) and plants, however, its effects on soil AMF-plant interactions are still not clearly defined. This is particularly concerned in dry grasslands where plant growths are more dependent on soil AMF to tolerate environmental stresses. In these regions, animal grazing has been rapidly increasing and degrading grasslands, e.g. the Tibetan Plateau. To reveal the AMF-plant interactions and their responses to grazing, we investigated the soil AMF-plant interaction and AMF community assembly processes in paired fields of grazed and non-grazed grasslands using Illumina sequencing on the Tibetan Plateau. Our results demonstrated that grazing did not influence the soil AMF diversity and community structure, but substantially altered AMF-plant interaction and AMF community assembly processes. Network analysis demonstrated that grazing enhanced AMF-plant interaction complexity, indicated by the increased network connectance, average clustering coefficient and importance of hub plants in grazed grasslands. Additionally, grazing substantially increased the stochasticity of AMF community assembly in steppe and desert soils by reducing the deterministic effects of plant richness and enhancing AMF-plant interaction. Soil AMF richness positively correlated with plant evenness in non-grazed grasslands (P
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- 2023
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14. Insula network connectivity mediates the association between childhood maltreatment and depressive symptoms in major depressive disorder patients
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Cancan He, Dandan Fan, Xinyi Liu, Qing Wang, Haisan Zhang, Hongxing Zhang, Zhijun Zhang, and Chunming Xie
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Childhood maltreatment (CM) is a major risk factor for developing the major depressive disorder (MDD), however, the neurobiological mechanism linking CM and MDD remains unclear. We recruited 34 healthy controls (HCs) and 44 MDD patients to complete the childhood maltreatment experience assessment with Childhood Trauma Questionnaire (CTQ) and resting-state fMRI scan. Multivariate linear regression analysis was employed to identify the main effects of CM and depressive symptoms total and subfactors scores on bilateral anterior and posterior insula functional connectivity (IFC) networks, respectively. Mediation analysis was performed to investigate whether IFC strength mediates the association between CM and depressive symptoms. MDD patients showed significantly decreased connectivity in the dorsal medial prefrontal cortex and increased connectivity in the medial frontal gyrus in the bipartite IFC networks, compared to HCs. The main effects of CM and depressive symptoms showed a large discrepancy on the anterior and posterior IFC networks, which primarily located in the frontal-limbic system. Further, conjunction analysis identified the overlapping regions linking CM and depressive symptoms were mainly implicated in self-regulation and cognitive processing circuits. More important, these IFC strengths could mediate the association between different types of CM, especially for childhood abuse and childhood neglect, and depressive symptoms in those overlapping regions. We demonstrated that early exposure to CM may increase the vulnerability to depression by influencing brain’s self-regulating and cognitive processing circuitry. These findings provide new insight into the understanding of pathological mechanism underlying CM-induced depressive symptoms.
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- 2022
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15. Loss of grand histone H3 lysine 27 trimethylation domains mediated transcriptional activation in esophageal squamous cell carcinoma
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Jian Yuan, Qi Jiang, Tongyang Gong, Dandan Fan, Ji Zhang, Fukun Chen, Xiaolin Zhu, Xinyu Wang, Yunbo Qiao, Hongyan Chen, Zhihua Liu, and Jianzhong Su
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Medicine ,Genetics ,QH426-470 - Abstract
Abstract Trimethylation of histone H3 lysine 27 trimethylation (H3K27me3) may be recruited by repressive Polycomb complexes to mediate gene silencing, which is critical for maintaining embryonic stem cell pluripotency and differentiation. However, the roles of aberrant H3K27me3 patterns in tumorigenesis are not fully understood. Here, we discovered that grand silencer domains (breadth > 50 kb) for H3K27me3 were significantly associated with epithelial cell differentiation and exhibited high gene essentiality and conservation in human esophageal epithelial cells. These grand H3K27me3 domains exhibited high modification signals involved in gene silencing, and preferentially occupied the entirety of topologically associating domains and interact with each other. We found that widespread loss of the grand H3K27me3 domains in of esophageal squamous cell carcinomas (ESCCs) were enriched in genes involved in epithelium and endothelium differentiation, which were significantly associated with overexpression with increase of active modifications of H3K4me3, H3K4me1, and H3K27ac marks, as well as DNA hypermethylation in the gene bodies. A total of 208 activated genes with loss of grand H3K27me3 domains in ESCC were identified, where the higher expression and mutation of T-box transcription factor 20 (TBX20) were associated with worse patients’ outcomes. Our results showed that knockdown of TBX20 may have led to a striking defect in esophageal cancer cell growth and carcinogenesis-related pathway, including cell cycle and homologous recombination. Together, our results reveal that loss of grand H3K27me3 domains represent a catalog of remarkable activating regulators involved in carcinogenesis.
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- 2021
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16. Oncogenic enhancers drive esophageal squamous cell carcinogenesis and metastasis
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Bo Ye, Dandan Fan, Weiwei Xiong, Min Li, Jian Yuan, Qi Jiang, Yuting Zhao, Jianxiang Lin, Jie Liu, Yilv Lv, Xiongjun Wang, Zhigang Li, Jianzhong Su, and Yunbo Qiao
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Science - Abstract
The role of regulatory cis-elements in carcinogenesis and metastasis in esophageal squamous cell carcinoma remains crucial. Here the authors investigate H3K27ac-marked active enhancer profiles and transcriptomes in different types of esophageal tissues and identify oncogenic events and potential therapeutic targets.
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- 2021
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17. Circ3823 contributes to growth, metastasis and angiogenesis of colorectal cancer: involvement of miR-30c-5p/TCF7 axis
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Yaxin Guo, Yuying Guo, Chen Chen, Dandan Fan, Xiaoke Wu, Luyang Zhao, Bo Shao, Zhenqiang Sun, and Zhenyu Ji
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Colorectal cancer (CRC) ,Tumour progression ,Angiogenesis ,circ3823 ,N6-methyladenosine (m6A) ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Colorectal cancer (CRC) is one of the most common malignant tumours. The recurrence and metastasis of CRC seriously affect the survival rate of patients. Angiogenesis is an extremely important cause of tumour growth and metastasis. Circular RNAs (circRNAs) have been emerged as vital regulators for tumour progression. However, the regulatory role, clinical significance and underlying mechanisms still remain largely unknown. Methods High-throughput sequencing was used to analyse differential circRNAs expression in tumour and non-tumour tissues of CRC. In situ hybridization (ISH) and qRT-PCR were used to determine the level of circ3823 in CRC tissues and serum samples. Then, functional experiments in vitro and in vivo were performed to investigate the effects of circ3823 on tumour growth, metastasis and angiogenesis in CRC. Sanger sequencing, RNase R and Actinomycin D assay were used to verify the ring structure of circ3823. Mechanistically, dual luciferase reporter assay, fluorescent in situ hybridization (FISH), RNA immunoprecipitation (RIP) and RNA pull-down experiments were performed to confirm the underlying mechanisms of circ3823. Results Circ3823 was evidently highly expressed in CRC and high circ3823 expression predicted a worse prognosis of CRC patients. Receiver operating characteristic curves (ROCs) indicated that the expression of circ3823 in serum showed high sensitivity and specificity for detecting CRC which means circ3823 have the potential to be used as diagnostic biomarkers. Functional experiments in vitro and in vivo indicated that circ3823 promote CRC cell proliferation, metastasis and angiogenesis. Mechanism analysis showed that circ3823 act as a competing endogenous RNA of miR-30c-5p to relieve the repressive effect of miR-30c-5p on its target TCF7 which upregulates MYC and CCND1, and finally facilitates CRC progression. In addition, we found that N6-methyladenosine (m6A) modification exists on circ3823. And the m6A modification is involved in regulating the degradation of circ3823. Conclusions Our findings suggest that circ3823 promotes CRC growth, metastasis and angiogenesis through circ3823/miR-30c-5p/TCF7 axis and it may serve as a new diagnostic marker or target for treatment of CRC patients. In addition, m6A modification is involved in regulating the degradation of circ3823.
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- 2021
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18. Magnetic vortex nanoring coated with gadolinium oxide for highly enhanced T1-T2 dual-modality magnetic resonance imaging-guided magnetic hyperthermia cancer ablation
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Jianfeng Bao, Shuangshuang Guo, Xiangyang Zu, Yuchuan Zhuang, Dandan Fan, Yong Zhang, Yupeng Shi, Xin Pang, Zhenyu Ji, and Jingliang Cheng
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T1-T2 dual-modality ,Vortex nanoring ,MRI ,Magnetic hyperthermia ,Theranostic ,Tumor ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Nowadays, about 30% of magnetic resonance imaging (MRI) exams need contrast agents (CAs) to improve the sensitivity and quality of the images for accurate diagnosis. Here, a multifunctional nano-agent with ring-like vortex-domain iron oxide as core and gadolinium oxide as shell (vortex nanoring Fe3O4 @Gd2O3, abbreviated as VNFG) was firstly designed and prepared for highly enhanced T1-T2 dual-modality magnetic resonance imaging (MRI)-guided magnetic thermal cancer therapy. After thorough characterization, the core-shell structure of VNFG was confirmed. Moreover, the excellent heat generation property (SAR=984.26 W/g) of the proposed VNFG under alternating magnetic fields was firmly demonstrated. Furthermore, both in vitro and in vivo studies have revealed a good preliminary indication of VNFG’s biological compatibility, dual-modality enhancing feature and antitumor efficacy. This work demonstrates that the proposed VNFG can be a high-performance tumor diagnosis and theranostic treatment agent and may have great potential for clinical application in the future.
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- 2022
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19. Alterations of core structural network connectome associated with suicidal ideation in major depressive disorder patients
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Xinyi Liu, Cancan He, Dandan Fan, Feifei Zang, Yao Zhu, Haisan Zhang, Zhijun Zhang, Hongxing Zhang, and Chunming Xie
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Suicide ideation (SI) is a most high-risk clinical sign for major depressive disorder (MDD). However, whether the rich-club network organization as a core structural network is associated with SI and how the related neural circuits are distributed in MDD patients remain unknown. Total 177 participants including 69 MDD patients with SI (MDDSI), 58 MDD without SI (MDDNSI) and 50 cognitively normal (CN) subjects were recruited and completed neuropsychological tests and diffusion-tensor imaging scan. The rich-club organization was identified and the global and regional topological properties of structural networks, together with the brain connectivity of specific neural circuit architectures, were analyzed. Further, the support vector machine (SVM) learning was applied in classifying MDDSI or MDDNSI from CN subjects. MDDSI and MDDNSI patients both exhibited disrupted rich-club organizations. However, MDDSI patients showed that the differential network was concentrated on the non-core low-level network and significantly destroyed betweeness centrality was primarily located in the regional non-hub regions relative to MDDNSI patients. The differential structural network connections involved the superior longitudinal fasciculus and the corpus callosum were incorporated in the cognitive control circuit and default mode network. Finally, the feeder serves as a potentially powerful indicator for distinguishing MDDSI patients from MDDNSI or CN subjects. The altered rich-club organization provides new clues to understand the underlying pathogenesis of MDD patients, and the feeder was useful as a diagnostic neuroimaging biomarker for differentiating MDD patients with or without SI.
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- 2021
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20. DKFD: Optimizing Common Pediatric Dermatoses Detection with Novel Loss Function and Post-Processing
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Dandan Fan, Hui Li, Mei Chen, Qingqing Liang, and Huarong Xu
- Subjects
object detection ,common pediatric dermatoses ,images dataset ,DK_Loss ,Fliter_nms ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Using appropriate classification and recognition technology can help physicians make clinical diagnoses and decisions more effectively as a result of the ongoing development of artificial intelligence technology in the medical field. There are currently a number of issues with the detection of common pediatric dermatoses, including the challenge of image collection, the low resolution of some collected images, the intra-class variability and inter-class similarity of disease symptoms, and the mixing of disease symptom detection results. To resolve these problems, we first introduced the Random Online Data Augmentation and Selective Image Super-Resolution Reconstruction (RDA-SSR) method, which successfully avoids overfitting in training, to address the issue of the small dataset and low resolution of collected images, increase the number of images, and improve the image quality. Second, for the issue of an imbalance between difficult and simple samples, which is brought on by the variation within and between classes of disease signs during distinct disease phases. By increasing the loss contribution of hard samples for classification on the basis of the cross-entropy, we propose the DK_Loss loss function for two-stage object detection, allowing the model to concentrate more on the learning of hard samples. Third, in order to reduce redundancy and improve detection precision, we propose the Fliter_nms post-processing method for the intermingling of detection results based on the NMS algorithm. We created the CPD-10 image dataset for common pediatric dermatoses and used the Faster R-CNN network training findings as a benchmark. The experimental results show that the RDA-SSR technique, while needing a similar collection of parameters, can improve mAP by more than 4%. Furthermore, experiments were conducted over the CPD-10 dataset and PASCAL VOC2007 dataset to evaluate the effectiveness of DK_Loss over the two-stage object detection algorithm, and the results of cross-entropy loss-function-based training are used as baselines. The findings demonstrated that, with DK_Loss taken into account, its mAP is 1–2% above the baseline. Furthermore, the experiments confirmed that the Fliter_nms post-processing method can also improve model precision.
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- 2023
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21. Alternative donor peripheral blood stem cell transplantation for the treatment of high-risk refractory and/or relapsed childhood acute leukemia: a randomized trial
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Binglei Zhang, Jian Zhou, Fengkuan Yu, Tianxin Lv, Baijun Fang, Dandan Fan, Zhenyu Ji, and Yongping Song
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Prognosis ,High-risk refractory and/or relapsed childhood acute leukemia ,Allogeneic stem cell transplantation ,Matched sibling donors ,Alternative donors ,Diseases of the blood and blood-forming organs ,RC633-647.5 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The high-risk refractory and/or relapsed (R/R) childhood acute leukemia prognosis is poor, and allogeneic stem cell transplantation (allo-HSCT) is the most prudent treatment modality. However, there are limited matched sibling donors (MSDs), and alternative donors (ADs) are the main source for allo-HSCT. Thus, we evaluated the clinical efficacy of AD peripheral allo-HSCT for treating high-risk R/R childhood acute leukemia. Methods We assessed 111 children who underwent allo-HSCT at the Affiliated Cancer Hospital of Zhengzhou University between October 2006 and July 2019. The patients were divided in the MSD and AD groups, and their clinical characteristics, complications, and survival rates were compared. Results The cumulative incidences of Epstein–Barr virus and cytomegalovirus infections were significantly higher in the AD than in the MSD group (P
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- 2020
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22. Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
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Zaoqu Liu, Yaxin Guo, Xiuxiu Yang, Chen Chen, Dandan Fan, Xiaoke Wu, Chaohua Si, Yanxin Xu, Bo shao, Zhuang Chen, Qin Dang, Wenming Cui, Xinwei Han, Zhenyu Ji, and Zhenqiang Sun
- Subjects
colorectal cancer ,genomic alteration ,mutational signature ,molecular subtype ,prognosis ,metastasis ,Biology (General) ,QH301-705.5 - Abstract
The immune microenvironment has profound impacts on the initiation and progression of colorectal cancer (CRC). Therefore, the goal of this article is to identify two robust immune subtypes in CRC, further provide novel insights for the underlying mechanisms and clinical management. In this study, two CRC immune subtypes were identified using the consensus clustering of immune-related gene expression profiles in the meta-GEO dataset (n = 1,198), and their reproducibility was further verified in the TCGA-CRC dataset (n = 638). Subsequently, we characterized the immune escape mechanisms, gene alterations, and clinical features of two immune subtypes. Cluster 1 (C1) was defined as the “immune cold subtype” with immune cell depletion and deficiency, while cluster 2 (C2) was designed as the “immune hot subtype”, with abundant immune cell infiltration and matrix activation. We also underlined the potential immune escape mechanisms: lack of MHC molecules and defective tumor antigen presentation capacity in C1, increased immunosuppressive molecules in C2. The prognosis and sensitivity to 5-FU, Cisplatin and immunotherapy differed between two subtypes. According to the two immune subtypes, we developed a prognosis associated risk score (PARS) with the accurate performance for predicting the prognosis. Additionally, two nomograms for overall survival (OS) and disease-free survival (DFS) were further constructed to facilitate clinical management. Overall, our research provides new references and insights for understanding and refining the CRC.
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- 2022
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23. Polypyrrole-Coated Magnetite Vortex Nanoring for Hyperthermia-Boosted Photothermal/Magnetothermal Tumor Ablation Under Photoacoustic/Magnetic Resonance Guidance
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Jianfeng Bao, Shuangshuang Guo, Xiangyang Zu, Yuchuan Zhuang, Dandan Fan, Yong Zhang, Yupeng Shi, Zhenyu Ji, Jingliang Cheng, and Xin Pang
- Subjects
magnetite vortex nanoring ,magnetic hyperthermia ,photothermal hyperthermia ,theranostics ,multimodal imaging ,Biotechnology ,TP248.13-248.65 - Abstract
Photothermal/magnetothermal-based hyperthermia cancer therapy techniques have been widely investigated, and associated nanotechnology-assisted treatments have shown promising clinical potentials. However, each method has some limitations, which have impeded extensive applications. For example, the penetration ability of the photothermal is not satisfactory, while the heating efficiency of the magnetothermal is very poor. In this study, a novel magnetite vortex nanoring nanoparticle-coated with polypyrrole (denoted as nanoring Fe3O4@PPy-PEG) was first synthesized and well-characterized. By combining photothermal and magnetothermal effects, the performance of the dual-enhanced hyperthermia was significantly improved, and was thoroughly examined in this study. Benefiting from the magnetite vortex nanoring and polypyrrole, Fe3O4@PPy-PEG showed excellent hyperthermia effects (SAR = 1,648 Wg–1) when simultaneously exposed to the alternating magnetic field (300 kHz, 45 A) and near-infrared (808 nm, 1 W cm–2) laser. What is more, nanoring Fe3O4@PPy-PEG showed a much faster heating rate, which can further augment the antitumor effect by incurring vascular disorder. Besides, Fe3O4@PPy-PEG exhibited a high transverse relaxation rate [60.61 mM–1 S–1 (Fe)] at a very low B0 field (0.35 T) and good photoacoustic effect. We believe that the results obtained herein can significantly promote the development of multifunctional nanoparticle-mediated magnetic and photo induced efficient hyperthermia therapy.
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- 2021
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24. Effects of exosomes on pre-metastatic niche formation in tumors
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Yaxin Guo, Xiang Ji, Jinbo Liu, Dandan Fan, Quanbo Zhou, Chen Chen, Weiwei Wang, Guixian Wang, Haijiang Wang, Weitang Yuan, Zhenyu Ji, and Zhenqiang Sun
- Subjects
Exosomes ,Pre-metastatic niche ,Tumor microenvironment ,Immunoregulation ,Biomarker ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract A pre-metastatic niche is a microenvironment prepared for the colonization of circulating tumor cells in specific organs. Exosomes are extracellular vesicles with a variety of biological functions. Exosomes play an irreplaceable role in the development of pre-metastatic niches, and mainly function as communication medium. In this review, we analyzed the effects of exosomes on pre-metastatic niches from various perspectives, including inflammation, immune response, angiogenesis, organotropism, matrix remodeling and biomarker expression. In particular, exosomes express programmed death ligand 1 (PD-L1) and cause the immune escape of tumor cells. The immunomodulatory effects of exosomes and their potential in liquid diagnosis have drawn our attention. The potential value of exosomes and pre-metastatic niches will be realized in the field of immunity therapy.
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- 2019
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25. Altered Regional Cerebral Blood Flow and Brain Function Across the Alzheimer's Disease Spectrum: A Potential Biomarker
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Qianqian Zhang, Qing Wang, Cancan He, Dandan Fan, Yao Zhu, Feifei Zang, Chang Tan, Shaoke Zhang, Hao Shu, Zhijun Zhang, Haixia Feng, Zan Wang, and Chunming Xie
- Subjects
Alzheimer's disease ,arterial spin labeling ,resting-state functional MRI ,regional homogeneity ,cerebral blood flow ,amplitude of low frequency fluctuation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Objective: To investigate variation in the characteristics of regional cerebral blood flow (rCBF), brain activity, and intrinsic functional connectivity (FC) across the Alzheimer's disease spectrum (ADS).Methods: The study recruited 20 individuals in each of the following categories: Alzheimer's disease (AD), mild cognitive impairment (MCI), subjective cognitive decline (SCD), and healthy control (HC). All participants completed the 3.0T resting-state functional MRI (rs-fMRI) and arterial spin labeling scans in addition to neuropsychological tests. Additionally, the normalized CBF, regional homogeneity (ReHo), and amplitude of low-frequency fluctuation (ALFF) of individual subjects were compared in the ADS. Moreover, the changes in intrinsic FC were investigated across the ADS using the abnormal rCBF regions as seeds and behavioral correlations. Finally, a support-vector classifier model of machine learning was used to distinguish individuals with ADS from HC.Results: Compared to the HC subjects, patients with AD showed the poorest level of rCBF in the left precuneus (LPCUN) and right middle frontal gyrus (RMFG) among all participants. In addition, there was a significant decrease in the ALFF in the bilateral posterior cingulate cortex (PCC) and ReHo in the right PCC. Moreover, RMFG- and LPCUN-based FC analysis revealed that the altered FCs were primarily located in the posterior brain regions. Finally, a combination of altered rCBF, ALFF, and ReHo in posterior cingulate cortex/precuneus (PCC/PCUN) showed a better ability to differentiate ADS from HC, AD from SCD and MCI, but not MCI from SCD.Conclusions: The study demonstrated the significance of an altered rCBF and brain activity in the early stages of ADS. These findings, therefore, present a potential diagnostic neuroimaging-based biomarker in ADS. Additionally, the study provides a better understanding of the pathophysiology of AD.
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- 2021
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26. Identification of microRNA-9 linking the effects of childhood maltreatment on depression using amygdala connectivity
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Cancan He, Ying Bai, Zan Wang, Dandan Fan, Qing Wang, Xinyi Liu, Haisan Zhang, Hongxing Zhang, Zhijun Zhang, Honghong Yao, and Chunming Xie
- Subjects
Major depressive disorder ,Childhood maltreatment ,microRNA-9 ,Resting-state fMRI ,Amygdala functional connectivity ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Childhood maltreatment (CM) is regarded as an important risk factor for major depressive disorder (MDD). However, the neural links corresponding to the process of early CM experience producing brain alterations and then leading to depression later remain unclear. To explore the neural basis of the effects of CM on MDD and the potential role of microRNA-9 (miR-9) in these processes, we recruited 40 unmedicated MDD patients and 34 healthy controls (HCs) to complete resting-state fMRI scans and peripheral blood miR-9 tests. The neural substrates of CM, miR-9, and depression, as well as their interactive effects on intrinsic amygdala functional connectivity (AFC) networks were investigated in MDD patients. Two-step mediation analysis was separately employed to explore whether AFC strength mediates the association among CM severity, miR-9 levels, and depression. A support vector classifier (SVC) model of machine learning was used to distinguish MDD patients from HCs. MDD patients showed higher miR-9 levels that were negatively correlated with CM scores and depressive severity. Overlapping effects of CM, miR-9, and depressive severity on bilateral AFC networks in MDD patients were primarily located in the prefrontal-striatum pathway and limbic system. The connection of amygdala to prefrontal-limbic circuits could mediate the effects of CM severity on the miR-9 levels, as well as the impacts of miR-9 levels on the severity of depression in MDD patients. Furthermore, the SVC model, which integrated miR-9 levels, CM severity, and AFC strength in prefrontal-limbic regions, had good power in differentiating MDD patients from HCs (accuracy 85.1%). MiR-9 may play a crucial role in the process of CM experience-produced brain changes targeting prefrontal-limbic regions and that subsequently leads to depression. The present neuroimaging-epigenetic results provide new insight into our understanding of MDD pathophysiology.
- Published
- 2021
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27. Reprogramming the immunosuppressive microenvironment of IDH1 wild-type glioblastoma by blocking Wnt signaling between microglia and cancer cells
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Dandan Fan, Qi Yue, Jian Chen, Cong Wang, Ruilin Yu, Ziyi Jin, Shujie Yin, Qinyue Wang, Luo Chen, Xueling Liao, Chengyuan Peng, Jianpin Zhang, Zhonglian Cao, Ying Mao, Ruimin Huang, Liang Chen, and Cong Li
- Subjects
wnt/β-catenin ,idh1-wildtype glioblastoma ,microglia ,phenotypic polarization ,Immunologic diseases. Allergy ,RC581-607 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The vast majority (>90%) of glioblastoma (GBM) patients belong to the isocitrate dehydrogenase 1 wild type (IDH1WT) group which exhibits a poor prognosis with a median survival of less than 15 months. This study demonstrated numerous immunosuppressive genes as well as β-catenin gene, pivotal for Wnt/β-catenin signaling, were upregulated in 206 IDH1WT glioma patients using the Chinese Glioma Genome Atlas (CGGA) database. The increase in microglia with an immunosuppressive phenotype and the overexpression of β-catenin protein were further verified in IDH1WT GBM patients and IDH1WT GL261 glioma allografts. Subsequently, we found that IDH1WT GL261 cell-derived conditioned medium activated Wnt/β-catenin signaling in primary microglia and triggered their transition to an immunosuppressive phenotype. Blocking Wnt/β-catenin signaling not only attenuated microglial polarization to the immunosuppressive subtype but also reactivated immune responses in IDH1WT GBM allografts by simultaneously enhancing cytotoxic CD8+ T cell infiltration and downregulating regulatory T cells. Positron emission tomography imaging demonstrated enhanced proinflammatory activities in IDH1WT GBM allografts after the blockade of Wnt signaling. Finally, gavage administration of a Wnt signaling inhibitor significantly restrained tumor proliferation and improved the survival of model mice bearing IDH1WT GBM allografts. Depletion of CD8+ T cells remarkably abrogated the therapeutic efficacy induced by the Wnt signaling inhibitor. Overall, the present work indicates that the crosstalk between IDH1WT glioma cells and immunosuppressive microglia is important in maintaining the immunosuppressive glioma microenvironment. Blocking Wnt/β-catenin signaling is a promising complement for IDH1WT GBM treatment by improving the hostile immunosuppressive microenvironment.
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- 2021
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28. Author Correction: Loss of grand histone H3 lysine 27 trimethylation domains mediated transcriptional activation in esophageal squamous cell carcinoma
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Jian Yuan, Qi Jiang, Tongyang Gong, Dandan Fan, Ji Zhang, Fukun Chen, Xiaolin Zhu, Xinyu Wang, Yunbo Qiao, Hongyan Chen, Zhihua Liu, and Jianzhong Su
- Subjects
Medicine ,Genetics ,QH426-470 - Published
- 2021
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29. Swept Jamming Mitigation in FHSS Communication via Sparsity Adaptive OMP.
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Yongshun Zhang, Changsheng Shan, Dandan Fan, Feng Sun, and Jun Wang
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- 2023
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30. The Trade-off Between Privacy and Utility in Local Differential Privacy.
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Mengqian Li, Youliang Tian, Junpeng Zhang, Dandan Fan, and Dongmei Zhao
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- 2021
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31. SaME: Sharpness-aware Matching Ensemble for Robust Palmprint Recognition.
- Author
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Xu Liang, Zhaoqun Li, Dandan Fan, Jinyang Yang, Guangming Lu, and David Zhang 0001
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- 2021
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32. BPFNet: A Unified Framework for Bimodal Palmprint Alignment and Fusion.
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Zhaoqun Li, Xu Liang, Dandan Fan, Jinxing Li, and David Zhang 0001
- Published
- 2021
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33. Research on Power Control Algorithm in the Multi-target TT&C System.
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Lihong Lv, Yiwen Chen, Dandan Fan, Jianglai Xu, and Zheshuai Zhou
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- 2020
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34. Registration of Color Point Cloud by Combining with Color Moments Information.
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Weile Chen, Yang Yang 0066, Dandan Fan, Zhuo Chen, and Qian Kou
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- 2018
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35. Summary of Outpatient Visits for Characteristic Nursing in Traditional Chinese Medicine.
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Junrui Ma, Hushan Zhang, Jialan Wang, Jie Gao, Dandan Fan, Yanping Qian, Zhuo Chen, Ruifang Bao, Lihua Yin, and Guangyi Xiong
- Subjects
CHINESE medicine ,NURSES ,CROSS-sectional method ,HEALTH services accessibility ,OUTPATIENT services in hospitals ,CUPPING ,SCIENTIFIC observation ,NURSING ,RETROSPECTIVE studies ,MEDICAL appointments ,MOXIBUSTION ,ACUPUNCTURE points ,MASSAGE therapy ,DATA analysis software ,HEALTH education - Abstract
The aim of this study was to investigate the practical outcomes of traditional Chinese medicine specialty nursing clinics in the clinical setting. Outpatient services have become increasingly popular for seeking medical care. Establishing traditional Chinese medicine specialty nursing clinics can meet the medical needs of the general public, and provide patients with convenient and efficient medical services. This study employed a retrospective crosssectional observational design to analyze the medical service status of all patients who attended the clinic since its opening. Five qualified traditional Chinese medicine nursing experts identified and implemented 5 categories of traditional Chinese medicine characteristic nursing techniques, including cupping, moxibustion, needle acupuncture, and massage. Nurses and patients evaluated the treatment outcomes for various diseases. Since the establishment of the nursing outpatient department 2 years ago, there have been over 7046 visits, with a satisfaction rate of 97.1%. Currently, 5 nursing experts are nurturing a total of 11 graduate students, conducting 5 free clinics in the nursing outpatient department, and organizing 3 visits by overseas experts. The traditional Chinese medicine specialty nursing outpatient service effectively meets the diverse medical needs of patients, alleviates the outpatient pressure on hospitals, enhances the specialized development of nurses, increases the prominence of traditional Chinese medicine specialty nursing techniques, and promotes traditional Chinese medicine culture. [ABSTRACT FROM AUTHOR]
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- 2024
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36. The FTO-CMPK2 Pathway in Fibroblast-like Synoviocytes Modulates Rheumatoid Arthritis Synovial Inflammation and Cartilage Homeostasis via mtDNA Regulation.
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Li Jin, Qiyue Chen, Ke Hu, Dandan Fan, Heping Zhang, Jiaxin Deng, Weizhong Qi, and Qinghong Yu
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- 2024
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37. PKLNet: Keypoint Localization Neural Network for Touchless Palmprint Recognition Based on Edge-Aware Regression
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Xu Liang, Dandan Fan, Jinyang Yang, Wei Jia, Guangming Lu, and David Zhang
- Subjects
Signal Processing ,Electrical and Electronic Engineering - Published
- 2023
38. SVR based voice traffic prediction incorporating impact from neighboring cells.
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Yanqin Zhang, Wen Wang, Sihai Zhang, Dandan Fan, Baohua Kou, and Wuyang Zhou
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- 2016
39. Innovative Contactless Palmprint Recognition System Based on Dual-Camera Alignment
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Xu Liang, Zhaoqun Li, Dandan Fan, Bob Zhang, Guangming Lu, and David Zhang
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Human-Computer Interaction ,Control and Systems Engineering ,Electrical and Electronic Engineering ,Software ,Computer Science Applications - Published
- 2022
40. Design of global emergency communication system based on geosynchronous TDRSS.
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Dandan Fan, Benjin Li, Li Gang Fei, Shenghua Gao, and Xiaohan Jin
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- 2015
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41. Controls on diversity of core and indicative microbial subcommunities in Tibetan Plateau grassland soils
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Yazhou Tang, Dandan Fan, Wei Guo, and Weidong Kong
- Subjects
Ecology ,Applied Microbiology and Biotechnology ,Microbiology - Abstract
Core subcommunity represents the less diversity but high abundance, while indicative subcommunity is highly diverse but low abundance in soils. The core subcommunity fundamentally maintains ecosystem stability, while the indicative plays important roles in vital ecosystem functions and is more sensitive to environmental change. However, their environmental driving factors and responses to human disturbances remain less defined. Herein, we explored the patterns of core and indicative soil microbes and their responses to animal grazing in dry grasslands across the Tibetan Plateau, using the Illumina sequencing of 16S rRNA gene. The results revealed that the core subcommunity diversity and richness were lower than the indicative in soils. The indicative subcommunity diversity exhibited substantially stronger correlations with nutrient-associated factors than the core diversity, including soil organic carbon, nitrogen and plant biomass. The core and indicative microbial subcommunities both strongly varied with grassland ecosystems, while the latter was also significantly influenced by grazing. The variation partitioning analysis revealed that indicative microbial subcommunity was explained less by environmental factors than core subcommunity (34.5% vs 73.0%), but more influenced by grazing (2.6% vs 0.1%). Our findings demonstrated that the indicative microbes were particularly sensitive to soil nutrient-associated factors and human disturbances in alpine dry grasslands.
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- 2023
42. Precipitation Drives Soil Protist Diversity and Community Structure in Dry Grasslands
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Jin Zhao, Dandan Fan, Wei Guo, Jianshuang Wu, Xianzhou Zhang, Xuliang Zhuang, and Weidong Kong
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Ecology ,Soil Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2023
43. Spectral Radius Conditions for the Rigidity of Graphs
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Dandan Fan, Xueyi Huang, and Huiqiu Lin
- Subjects
Computational Theory and Mathematics ,Applied Mathematics ,Discrete Mathematics and Combinatorics ,Geometry and Topology ,Theoretical Computer Science - Abstract
Rigidity is the property of a structure that does not flex under an applied force. In the past several decades, the rigidity of graphs has been widely studied in discrete geometry and combinatorics. Laman (1970) obtained a combinatorial characterization of rigid graphs in $\mathbb{R}^2$. Lovász and Yemini (1982) proved that every $6$-connected graph is rigid in $\mathbb{R}^2$. Jackson and Jordán (2005) strengthened this result, and showed that every $6$-connected graph is globally rigid in $\mathbb{R}^2$. Thus every graph with algebraic connectivity greater than $5$ is globally rigid in $\mathbb{R}^2$. In 2021, Cioabă, Dewar and Gu improved this bound, and proved that every graph with minimum degree at least $6$ and algebraic connectivity greater than $2+\frac{1}{\delta-1}$ (resp., $2+\frac{2}{\delta-1}$) is rigid (resp., globally rigid) in $\mathbb{R}^2$. In this paper, we study the rigidity of graphs in $\mathbb{R}^2$ from the viewpoint of adjacency eigenvalues. Specifically, we provide a spectral radius condition for the rigidity (resp., globally rigidity) of $2$-connected (resp., $3$-connected) graphs with given minimum degree. Furthermore, we determine the unique graph attaining the maximum spectral radius among all minimally rigid graphs of order $n$.
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- 2023
44. Supplementary Table S3 from Mutant NPM1 Hijacks Transcriptional Hubs to Maintain Pathogenic Gene Programs in Acute Myeloid Leukemia
- Author
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Xiaotian Zhang, Liling Wan, Shasha Chong, Jianzhong Su, Jolanta Grembecka, Tomasz Cierpicki, Gerd P. Pfeifer, Pamela Himadewi, Haley Gore, Dong Chen, Qinglan Li, Xinyu Wang, Hongzhi Miao, Yiman Liu, Qinyu Han, Dandan Fan, and Xue Qing David Wang
- Abstract
Supplementary Table S3 shows the differential expressed genes in NPM1c-koncked in HOXB8 cell lines vs parental cells
- Published
- 2023
45. Supplementary Figure S1-S8 from Mutant NPM1 Hijacks Transcriptional Hubs to Maintain Pathogenic Gene Programs in Acute Myeloid Leukemia
- Author
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Xiaotian Zhang, Liling Wan, Shasha Chong, Jianzhong Su, Jolanta Grembecka, Tomasz Cierpicki, Gerd P. Pfeifer, Pamela Himadewi, Haley Gore, Dong Chen, Qinglan Li, Xinyu Wang, Hongzhi Miao, Yiman Liu, Qinyu Han, Dandan Fan, and Xue Qing David Wang
- Abstract
Supplementary Figure S1 is associated with Figure1 and it shows the NPM1-WT binds to the rDNA arrays and NPM1c binds to non-repetitive genomic regions. Supplementary Figure S2 is associated with Figure1 and it shows NPM1c’s chromatin binding and association with gene expression. Supplementary Figure S3 is associated with Figure2 and shows NPM1c regulates the transcription of its target genes with BRU-seq. Supplementary Figure S4 is associated with Figure2 and it shows the characterization of NPM1c condensate with biochemical assay and imaging assay. Supplementary Figure S5 is associated with figure 3. The figure shows NPM1c and chromatin landacpe dymanics during dTag-13 treatment and wash-off. Supplementary Figure S6 is associated with figure 4. It shows the supplemental data of HOXB8-NPM1c-knock-in model. Supplementary figure S7 is associated with figure 5. It shows the supplemental data of XPO1's binding to chromatin in various leukemia cell lines and normal HSPCs. Supplementary Figure S8 is associated with figure 6. It shows the supplemental information of synergy between Menin and XPO1 inhibitor in the NPM1c AML cell line model.
- Published
- 2023
46. Vitamin D-binding protein in plasma microglia-derived extracellular vesicles as a potential biomarker for major depressive disorder
- Author
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Gaojia Zhang, Ling Li, Yan Kong, Dandan Xu, Yu Bao, Zhiting Zhang, Zhixiang Liao, Jiao Jiao, Dandan Fan, Xiaojing Long, Ji Dai, Chunming Xie, Zhiqiang Meng, and Zhijun Zhang
- Subjects
Cell Biology ,Molecular Biology ,Biochemistry ,Genetics (clinical) - Published
- 2023
47. Mutant NPM1 Hijacks Transcriptional Hubs to Maintain Pathogenic Gene Programs in Acute Myeloid Leukemia
- Author
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Xue Qing David Wang, Dandan Fan, Qinyu Han, Yiman Liu, Hongzhi Miao, Xinyu Wang, Qinglan Li, Dong Chen, Haley Gore, Pamela Himadewi, Gerd P. Pfeifer, Tomasz Cierpicki, Jolanta Grembecka, Jianzhong Su, Shasha Chong, Liling Wan, and Xiaotian Zhang
- Subjects
Oncology - Abstract
Nucleophosmin (NPM1) is a ubiquitously expressed nucleolar protein with a wide range of biological functions. In 30% of acute myeloid leukemia (AML), the terminal exon of NPM1 is often found mutated, resulting in the addition of a nuclear export signal and a shift of the protein to the cytoplasm (NPM1c). AMLs carrying this mutation have aberrant expression of the HOXA/B genes, whose overexpression leads to leukemogenic transformation. Here, for the first time, we comprehensively prove that NPM1c binds to a subset of active gene promoters in NPM1c AMLs, including well-known leukemia-driving genes—HOXA/B cluster genes and MEIS1. NPM1c sustains the active transcription of key target genes by orchestrating a transcription hub and maintains the active chromatin landscape by inhibiting the activity of histone deacetylases. Together, these findings reveal the neomorphic function of NPM1c as a transcriptional amplifier for leukemic gene expression and open up new paradigms for therapeutic intervention.Significance:NPM1 mutation is the most common mutation in AML, yet the mechanism of how the mutant protein results in AML remains unclear. Here, for the first time, we prove mutant NPM1 directly binds to active chromatin regions and hijacks the transcription of AML-driving genes.See related article by Uckelmann et al., p. 746.This article is highlighted in the In This Issue feature, p. 517
- Published
- 2023
48. Association between vitamin D supplementation and cancer incidence and mortality: A trial sequential meta-analysis of randomized controlled trials
- Author
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Zhangyou Guo, Ming Huang, Dandan Fan, Yuan Hong, Min Zhao, Rong Ding, Yao Cheng, and Shigang Duan
- Subjects
General Medicine ,Industrial and Manufacturing Engineering ,Food Science - Abstract
Observational studies and clinical trials have evaluated the associations between vitamin D supplementation and cancer incidence/mortality and obtained mixed results. Previous meta-analyses have also yielded inconsistent conclusions. In this paper, we conduct an updated meta-analysis by including current randomized clinical trials (RCTs) to assess the association between vitamin D supplementation and cancer incidence and mortality. The PubMed, Scopus and Embase databases were systematically searched from their inception to 6 February 2022. Fixed-effects meta-analyses were conducted. Trial sequential analyses were performed using a risk ratio reduction threshold of 10% for cancer incidence and mortality. Twenty-six RCTs were eligible, and pooled results indicated that vitamin D supplementation, compared to placebo with/without calcium, was not associated with a reduction in total cancer incidence (risk ratio: 0.98, 95% CI: 0.94, 1.02; I
- Published
- 2022
49. Automatic Recognition and Correction System of Running Action Based on Computer Vision Technology
- Author
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Tao Liu and Dandan Fan
- Published
- 2023
50. Learning Task-Weighted Codec for Image Compression ⋆,⋆⋆
- Author
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Dandan Fan, Wei Jia, Mu Li, and David Zhang
- Published
- 2023
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