3,023 results on '"Dan HUANG"'
Search Results
2. A novel model for predicting postoperative liver metastasis in R0 resected pancreatic neuroendocrine tumors: integrating computational pathology and deep learning-radiomics
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Mengke Ma, Wenchao Gu, Yun Liang, Xueping Han, Meng Zhang, Midie Xu, Heli Gao, Wei Tang, and Dan Huang
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Pancreatic neuroendocrine tumors ,Postoperative liver metastasis ,Deep learning-radiomics ,Computational pathology ,Nomogram ,Medicine - Abstract
Abstract Background Postoperative liver metastasis significantly impacts the prognosis of pancreatic neuroendocrine tumor (panNET) patients after R0 resection. Combining computational pathology and deep learning radiomics can enhance the detection of postoperative liver metastasis in panNET patients. Methods Clinical data, pathology slides, and radiographic images were collected from 163 panNET patients post-R0 resection at Fudan University Shanghai Cancer Center (FUSCC) and FUSCC Pathology Consultation Center. Digital image analysis and deep learning identified liver metastasis-related features in Ki67-stained whole slide images (WSIs) and enhanced CT scans to create a nomogram. The model’s performance was validated in both internal and external test cohorts. Results Multivariate logistic regression identified nerve infiltration as an independent risk factor for liver metastasis (p
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- 2024
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3. Hypoxia-enhanced YAP1-EIF4A3 interaction drives circ_0007386 circularization by competing with CRIM1 pre-mRNA linear splicing and promotes non-small cell lung cancer progression
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Lixia Li, Dewei Liu, Tingting Chen, Chunhui Wei, Youping Qiao, Weiliang Liu, Yanmei Liang, Zhu Liang, Chunyuan Chen, Dongming Li, Bin Wu, Xuanna Zhao, Dan Huang, and Dong Wu
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Non-small cell lung cancer ,Circ_0007386 ,miR-383-5p ,CIRBP ,EIF4A3 ,YAP1 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The progression of non-small cell lung cancer (NSCLC) is significantly influenced by circular RNAs (circRNAs), especially in tumor hypoxia microenvironment. However, the precise functions and underlying mechanisms of dysregulated circRNAs in NSCLC remain largely unexplored. Methods Differentially expressed circRNAs in NSCLC tissues were identified through high-throughput RNA sequencing. The characteristics of circ_0007386 were rigorously confirmed via Sanger sequencing, RNase R treatment and actinomycin D treatment. The effects of circ_0007386 on proliferation and apoptosis were investigated using CCK8, cloning formation assays, TUNEL staining, and flow cytometry assays in vitro. In vivo, xenograft tumor models were used to evaluate its impact on proliferation. Mechanistically, the regulatory relationships of circ_0007386, miR-383-5p and CIRBP were examined through dual luciferase reporter assays and rescue experiments. Additionally, we detected the binding of EIF4A3 to CRIM1 pre-mRNA by RNA immunoprecipitation and the interaction between YAP1 and EIF4A3 under hypoxic conditions by co-immunoprecipitation. Results Our investigation revealed a novel circRNA, designated as circ_0007386, that was upregulated in NSCLC tissues and cell lines. Circ_0007386 modulated proliferation and apoptosis in NSCLC both in vitro and in vivo. Functionally, circ_0007386 acted as a sponge for miR-383-5p, targeting CIRBP, which influenced NSCLC cell proliferation and apoptosis via the PI3K/AKT signaling pathway. Furthermore, under hypoxic conditions, the interaction between YAP1 and EIF4A3 was enhanced, leading to the displacement of EIF4A4 from binding to CRIM1 pre-mRNA. This facilitated the back-splicing of CRIM1 pre-mRNA, increasing the formation of circ_0007386. The circ_0007386/miR-383-5p/CIRBP axis was significantly associated with the clinical features and prognosis of NSCLC patients. Conclusions Circ_0007386, regulated by YAP1-EIF4A3 interaction under hypoxia conditions, plays an oncogenic role in NSCLC progression via the miR-383-5p/CIRBP axis.
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- 2024
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4. One-Dimensional Copper-Doped Rb2AgI3 with Efficient Sky-Blue Emission as a High-Performance X‑ray Scintillator
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Jiali Yao, Dan Huang, Xudong Hu, Haiming Cheng, Dayang Wang, Xiaoming Li, Wensheng Yang, and Renguo Xie
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Chemistry ,QD1-999 - Published
- 2024
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5. Analysis of the stakes of the Xianyang Ancient Ferry Site, Shaanxi, China
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Gele Teri, Peng Fu, Kezhu Han, Dan Huang, Yanli Li, Yujia Luo, Huiping Xing, and Yuhu Li
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The Xianyang Ancient Ferry Site ,Wood characterization ,Microbiological analysis ,Platycladus orientalis ,Fine Arts ,Analytical chemistry ,QD71-142 - Abstract
Abstract Historical records indicate that Xianyang Ancient Ferry Site, dating back over three millennia to the late Shang Dynasty, has been an important transportation hub in ancient times. The use of combined wooden stakes and stones is a special method for flood control among ancient flood prevention techniques. This research aims to evaluate the current preservation condition of these ancient wooden stakes. The dating of the wooden stakes at the site ranges between 940 ± 30 BP and 320 ± 30 BP. The fiber cross-section and microstructure images of the wooden samples indicate that the wood is attributed to Platycladus orientalis. SEM images indicate decay and deterioration of the wooden samples, with the presence of mold spores within the cavities. XRD, FTIR, and TG/DSC spectra of historical wooden samples collected from the site and fresh Platycladus orientalis wood samples demonstrate a significant decrease of cellulose crystallinity in the historical samples, leading to severe deterioration of the wood at the site. Five dominant mold species were identified, i.e., Aspergillus niger, Aspergillus flavus, Penicillium citrinum, Trichoderma, and Phanerochaete chrysosporium, which accelerate the degradation of cellulose and other polysaccharides. This research provides scientific evidence for the selection of reinforcement materials and guides curators and conservators to formulate conservation strategies in the future.
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- 2024
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6. Evaluation of commonly used reinforcement materials for color paintings on ancient wooden architecture in China
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Kezhu Han, Gele Teri, Cong Cheng, Yuxiao Tian, Dan Huang, Mantang Ge, Peng Fu, Yujia Luo, and Yuhu Li
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Color painting ,Evaluation ,Reinforcement agents ,Fine Arts ,Analytical chemistry ,QD71-142 - Abstract
Abstract Over recent decades, various heritage institutions have utilized a multitude of materials to reinforce the painted layers of ancient Chinese wooden architecture. In this study, we conducted a comprehensive evaluation of the properties and durability of four widely used reinforcement agents, i.e., AC33, B72, FKM, and FEVE, using a series of techniques, including contact angle tests, water vapor permeability measurements, color difference evaluations, tensile strength tests, UV–vis spectrometry, and scanning electron microscopy (SEM). The results demonstrate that the transmittance rates of the films made from these four reinforcement agents are approximately 100% in the visible light range. Among them, the B72 film exhibits the highest hydrophobicity. The AC33 film has better permeability, fair tensile strength, and is more hydrophilic. FKM film is more hydrophobic but has lower permeability and tensile strength. Overall, the FEVE film presents the best comprehensive properties, including better hydrophobicity, higher permeability, and tensile strength. This research provides data evidence to guide heritage conservators and curators in decision-making when selecting appropriate reinforcement materials in practice.
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- 2024
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7. EP300-ZNF384 transactivates IL3RA to promote the progression of B-cell acute lymphoblastic leukemia
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Zhijie Hou, Yifei Ren, Xuehong Zhang, Dan Huang, Fanzhi Yan, Wentao Sun, Wenjuan Zhang, Qingqing Zhang, Xihui Fu, Zhenghui Lang, Chenyang Chu, Boyang Zou, Beibei Gao, Bilian Jin, Zhijie Kang, Quentin Liu, and Jinsong Yan
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EP300-ZNF384 ,IL3RA ,IL-3 ,B-cell acute lymphoblastic leukemia ,Leukemogenesis ,Medicine ,Cytology ,QH573-671 - Abstract
Abstract The EP300-ZNF384 fusion gene is an oncogenic driver in B-cell acute lymphoblastic leukemia (B-ALL). In the present study, we demonstrated that EP300-ZNF384 substantially induces the transcription of IL3RA and the expression of IL3Rα (CD123) on B-ALL cell membranes. Interleukin 3 (IL-3) supplementation promotes the proliferation of EP300-ZNF348-positive B-ALL cells by activating STAT5. Conditional knockdown of IL3RA in EP300-ZF384-positive cells inhibited the proliferation in vitro, and induced a significant increase in overall survival of mice, which is attributed to impaired propagation ability of leukemia cells. Mechanistically, the EP300-ZNF384 fusion protein transactivates the promoter activity of IL3RA by binding to an A-rich sequence localized at -222/-234 of IL3RA. Furthermore, forced EP300-ZNF384 expression induces the expression of IL3Rα on cell membranes and the secretion of IL-3 in CD19-positive B precursor cells derived from healthy individuals. Doxorubicin displayed a selective killing of EP300-ZNF384-positive B-ALL cells in vitro and in vivo. Collectively, we identify IL3RA as a direct downstream target of EP300-ZNF384, suggesting CD123 is a potent biomarker for EP300-ZNF384-driven B-ALL. Targeting CD123 may be a novel therapeutic approach to EP300-ZNF384-positive patients, alternative or, more likely, complementary to standard chemotherapy regimen in clinical setting.
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- 2024
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8. Fetal sexual dimorphism of maternal thyroid function parameters during pregnancy, a single center retrospective real-world study
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Meiqin Wu, Chunping Hu, Dan Huang, Hao Ying, and Jing Hua
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fetal sex ,thyroid function ,pregnancy ,reference intervals ,real-world study ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
IntroductionThyroid function during pregnancy fluctuates with gestational weeks, seasons and other factors. However, it is currently unknown whether there is a fetal sex-specific thyroid function in pregnant women. The purpose of this study was to investigate the fetal sex differences of maternal thyroid-stimulating hormone (TSH) and free thyroxine (FT4) in pregnant women.MethodsThis single-center retrospective real-world study was performed by reviewing the medical records of pregnant women who received regular antenatal health care and delivered liveborn infants in Shanghai First Maternity and Infant Hospital (Pudong branch), from Aug. 18, 2013 to Jul. 18, 2020. Quantile regression was used to evaluate the relationship between various variables and TSH and FT4 concentrations. The quantile regression also evaluated the sex impact of different gestational weeks on the median of TSH and FT4.ResultsA total of 69,243 pregnant women with a mean age of 30.36 years were included. 36197 (52.28%) deliveries were boys. In the three different trimesters, the median levels (interquartile range) of TSH were 1.18 (0.66, 1.82) mIU/L and 1.39 (0.85, 2.05) mIU/L, 1.70 (1.19, 2.40) mIU/L; and the median levels (interquartile range) of FT4 were 16.63 (15.16, 18.31) pmol/L, 14.09 (12.30, 16.20) pmol/L and 13.40 (11.52, 14.71) pmol/L, respectively. The maternal TSH upper limit of reference ranges was decreased more in mothers with female fetuses during gestational weeks 7 to 12, while their FT4 upper limit of the reference ranges was increased more than those with male fetuses. After model adjustment, the median TSH level was 0.11 mIU/L lower (P
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- 2024
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9. Relationship between creatinine–cystatin C ratio and all-cause mortality in hospitalized patients with COVID-19: A prospective study in China
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Dong Wu, Jiahao Cao, Yiyan Lin, Xiaoer Chen, Bingyu Long, Bangxiao Huang, Gege Liu, Xiaofang Fu, Bin Wu, Dan Huang, Yuanli Zhang, Duolao Wang, and Xuanna Zhao
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Creatinine ,Cystatin C ,Sarcopenia ,COVID-19 ,Mortality ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: This study was conducted to investigate whether baseline creatinine–cystatin C ratio is associated with all-cause mortality in adult Chinese patients hospitalized with coronavirus disease 2019. Methods: This study included 933 patients with coronavirus disease 2019 who were admitted to The Affiliated Hospital of Guangdong Medical University between December 2022 and March 2023. All-cause mortality was determined by telephone follow-up after 28 days. Multivariate Cox proportional risk models were used to investigate the relationship between baseline creatinine–cystatin C ratio and all-cause mortality. Restricted cubic spline and two-piecewise Cox proportional hazards risk models were used to identify non-linear correlations. Results: Of the 933 patients, 128 died during the 28 days follow-up. The restricted cubic spline analysis of hospitalized patients with coronavirus disease 2019 revealed an L-shaped association between baseline creatinine–cystatin C ratio and all-cause mortality, with a threshold creatinine–cystatin C ratio of ≤0.93 predicting all-cause mortality. Specifically, a baseline creatinine–cystatin C ratio below this threshold value was negatively correlated with mortality (hazard ratio 0.12, 95 % confidence interval 0.03–0.48), but a creatinine–cystatin C ratio >0.93 was not correlated with mortality (hazard ratio 1.29, 95 % confidence interval 0.65–2.55). Conclusions: In Chinese adult patients hospitalized with coronavirus disease 2019, an L-shaped relationship was observed between the baseline creatinine–cystatin C ratio and all-cause mortality.
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- 2024
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10. The distribution and maturation of tertiary lymphoid structures can predict clinical outcomes of patients with gastric adenocarcinoma
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Hui Sun, Yuxi Liu, Wanjing Cheng, Rong Xiong, Wenchao Gu, Xiaoyan Zhang, Xin Wang, Xu Wang, Cong Tan, Weiwei Weng, Meng Zhang, Shujuan Ni, Dan Huang, Midie Xu, Weiqi Sheng, and Lei Wang
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stomach adenocarcinoma ,tertiary lymphoid structure (TLS) ,distribution of TLSs ,maturation of TLSs ,DC-LAMP+ dendritic cells ,prognosis ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionTertiary lymphoid structures (TLSs) are analogues of secondary lymphoid organs that contain various immune cells. The spatial distribution, maturation and composition of TLSs have differential effects on prognosis, and the roles of TLSs in gastric adenocarcinoma (GA) have not been revealed.MethodsThus, we evaluated the prognostic value of TLSs in GA through analysis of bulk RNA sequencing(RNA-seq) data from public databases and validated our findings in tumour samples from the Fudan University Shanghai Cancer Center (FUSCC) cohort. The spatial distribution,maturation, and composition of TLSs in GA were analysed by reviewing H&E-stained sections and by multiplex immunofluorescence (mIF) staining.ResultsWe found that TLSs, especially TLSs with germinal centres (GCs) and TLSs located in the invasive margin (IM), were correlated with prolonged overall survival (OS). Second, analysis of public RNA-seq data showed that high dendritic cell (DC) scores were a favourable prognostic factor in GA patients with high scores for both TLSs and GCs. In the FUSCC cohort, DC-LAMP+ DCs weresignificantly enriched in IM-TLSs with GCs, suggesting a potential correlation between the tumour immune activation milieu and the DC abundance. Third, compared to that in TLSs without GCs, the proportion of FOXP3+CD8+ Treg cells was significantly decreased in IM-TLSs with GCs, and the percentage of PD1+CD20+ B cells was significantly increased in TLSs with GCs.DiscussionOur results demonstrate that the spatial arrangement and maturation of TLSs significantly affect prognosis and indicate that TLSs could be a new additional factor for histopathological evaluation.
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- 2024
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11. The molecular and network mechanisms of antilipidemic potential effects of Ganfule capsules in nonalcoholic fatty liver disease
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Yu Pan, Liya Qiao, Yunkun Zhang, Suren R. Sooranna, Danna Huang, Min Ou, Fei Xu, Lu Chen, and Dan Huang
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Ganfule capsule ,Non-alcoholic fatty liver disease ,Network analysis ,Molecular docking ,Traditional herbal medicines ,Multiple screening strategies ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: Non-alcoholic fatty liver disease (NAFLD) is a common liver disorder characterized by hepatic steatosis, inflammation and fibrosis. Ganfule (GFL), a traditional Chinese medicine, has demonstrated therapeutic potential in the treatment of NAFLD but the mechanisms involved are not fully understood.To evaluate the biochemical mechanisms of GFL in treating NAFLD by examining its effects on biological networks, key therapeutic targets, histopathological changes and clinical implications. Methods: Chemical component screening, key target prediction, biological functional enrichment analysis, lipid profile localization analysis and complex network analysis were performed on GFL using multi-database mining, network analysis and molecular docking. An NAFLD rat model was then established and treated with different doses of GFL. Histopathological evaluation and western blotting were used to verify the expression levels of key target proteins in GFL-treated NAFLD rats. Results: Network analysis analysis identified 12 core targets, 12 core active ingredients and 7 core Chinese medicinal herbs in GFL potentially involved in the treatment of NAFLD. Biological functional enrichment analysis revealed the involvement of lipid metabolism, apoptosis and intracellular signaling pathways. Molecular docking confirmed a strong affinity between GFL's core compounds and certain target proteins. Histopathological examination of an NAFLD rat model showed reduced hepatocellular steatosis after GFL treatment. Western blotting revealed significant downregulation of PPARA and PPARD protein expression and upregulation of PIK3CG and PRKACA protein expression in NAFLD rats treated with lower doses of GFL. Conclusions: Our results suggest that GFL modulates key proteins involved in lipid metabolism and apoptosis pathways. GFL improved the histopathological features of NAFLD rats by regulating lipid metabolism as well as reducing hepatocyte apoptosis and hepatocellular steatosis. These findings offer insights into the biochemical mechanism of action of GFL and support its use in the treatment for NAFLD.
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- 2024
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12. From Dopant to Host: Solution Synthesis and Light‐Emitting Applications of Organic‐Inorganic Lanthanide‐Based Metal Halides
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Tianxin Bai, Qiujie Wang, Yunfei Bai, Qichao Meng, Hongyuan Zhao, Ziying Wen, Haibo Sun, Li Huang, Junke Jiang, Dan Huang, Feng Liu, and William W. Yu
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anti‐counterfeiting application ,lanthanide LED ,lanthanide phosphor ,lead‐free metal halides ,rare‐earth compounds ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The rich and unique energy level structure arising from 4fn inner shell configuration of trivalent lanthanide ions (Ln3+) renders them highly attractive for light‐emitting applications. Currently, research primarily focuses on Ln3+ doping in either traditional garnets or the recently developed perovskite phosphors. However, there have been few reports on stable phosphors crystallized with pure lanthanide elements. Herein, a universal solution‐based route to eight Ln3+‐based metal halides from the organic‐inorganic A4LnX7 family is described, where A+ = 4,4‐difluoropiperidinium (DFPD+), Ln3+ = Nd3+, Eu3+, Ho3+, Sm3+, Tm3+, Tb3+, Yb3+, Er3+, and X− = Cl−, Br−. Visible photoluminescence (PL) is observed from Tb3+‐, Eu3+‐, Ho3+‐, and Sm3+‐based compounds with Tb and Eu compositions exhibiting high PL quantum yields of 90–100%; Nd3+‐, Tm3+‐, Yb3+‐, and Er3+‐based crystals show fascinating near‐infrared emission. Light‐emitting diodes (LEDs) fabricated with (DFPD)4TbCl7 yield characteristic emission of Tb3+, representing the first demonstration of electroluminescence from these organic‐inorganic Ln3+‐based metal halides. Moreover, these materials exhibit distinct excitation wavelength‐dependent emission after alloying with different Ln3+ ions, making them interesting for multicolor display and multilevel information encryption applications. It is foreseen that this study will open up the way to a possible design of robust optoelectronic devices based on lanthanide metal halides.
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- 2024
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13. Advances in anti-inflammatory therapy for Livedoid vasculopathy
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Dan HUANG and Sijian WEN
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livedoid vasculopathy ,anti-inflammation ,adalimumab ,jak inhibitor ,Dermatology ,RL1-803 - Abstract
Livedoid vasculopathy is a type of vascular disorder with unclear etiology and pathogenesis, in addition to the lack of standardized diagnostic and treatment guidelines. Currently, it is believed that the development of this disease is associated with blood hypercoagulability and inflammation. However, studies also suggest the involvement of immune and inflammatory reactions in its pathogenesis. And anti-inflammatory therapy is effective. The drugs used for the treatment of livedoid vasculopathy include plant alkaloids (colchicine, tripterygium glycosides), glucocorticoids, JAK inhibitors, adalimumab, intravenous immunoglobulins and anti-inflammatory drugs. This review aims to summarize the anti-inflammatory therapy and methods for livedoid vasculopathy, providing references for clinicians in the management of this disorder.
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- 2024
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14. The development and implementation of pathological parameters and molecular testing impact prognosis of colorectal adenocarcinoma
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Midie Xu, Yaqi Li, Yingxue Liu, Jinjia Chang, Changming Zhou, Weiwei Weng, Hui Sun, Cong Tan, Xin Wang, Xu Wang, Meng Zhang, Shujuan Ni, Lei Wang, Yu Yang, Xiaoyan Zhou, Junjie Peng, Dan Huang, and Weiqi Sheng
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Colorectal adenocarcinoma ,Pathological features ,Molecular testing ,Trends ,Prognosis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objective: This study aims to analyze how changes in pathological diagnosis practice and molecular detection technology have affected clinical outcomes for colorectal cancer (CRC) patients in Fudan University Shanghai Cancer Center (FUSCC). Methods: This retrospective cohort study analyzed 21,141 pathologically confirmed CRC cases diagnosed at FUSCC from 2008 to 2020. Patients were divided into five groups for different analytical purposes: (1) the before vs. since 2014 groups to analyze the influence of the changes in the classification criteria of pT3 and pT4 staging on the survival of patients; (2) the partial vs. total mesorectal excision (TME) groups to analyze whether evaluation of completeness of the mesorectum have impact on the survival of patients; (3) the tumor deposit (TD)(+)N0 vs. TD(+)N1c groups to analyze the influence of the changes in the pN staging on the survival of patients with positive TD and negative regional lymph node metastasis (LNM); (4) the before vs. since 2013 groups to analyze the influence of the changes in the testing process of deficient mismatch repair on the survival of patients; and (5) the groups with vs. without RAS/BRAF gene mutation testing to analyze the influence of these testing on the survival of patients. Patients’ clinicopathological parameters, including age at diagnosis, sex, tumor size, location, differentiation, mucinous subtype, TD, lymphovascular invasion, perineural invasion, tumor depth, LNM and distant metastasis, and tumor-node-metastasis (TNM) stage, were compared between groups. Kaplan-Meier analysis with log rank method was performed for patients’ overall survival (OS) and disease-free survival (DFS) analyses. Results: In pathological reports, there were three parameter changes that impacted patient outcomes. Firstly, changes in the pT staging criteria led to a shift of the ratio of patients with stage pT3 to stage pT4 from 1: 110.9 to 1: 0.26. In comparison to patients admitted before 2014 (n = 4,754), a significant difference in prognosis between pT3 and pT4 stages was observed since 2014 (n = 9,965). Secondly, we began to evaluate the completeness of the mesorectum since 2016. As a result, 91.0% of patients with low rectal cancer underwent TME (n = 4,111) surgery, and patients with TME had significantly better OS compared with partial mesorectal excision (PME, n = 409). Thirdly, we began to stage TD (+) LNM (-) as N1c since 2017. The results showed that N1c (n = 127) but not N0 (n = 39) can improve the prognosis of patients without LNM and distal metastasis. In molecular testing, there have been three and five iterations of updates regarding mismatch repair (MMR)/microsatellite instability (MSI) status and RAS/BRAF gene mutation detection, respectively. The standardization of MMR status testing has sharply decreased the proportion of deficient MMR (dMMR) patients (from 32.5% to 7.4%) since 2013. The prognosis of patients underwent MMR status testing since 2013 (n = 867) were significantly better than patients before 2013 (n = 1,313). In addition, detection of RAS/BRAF gene mutation status (n = 5,041) resulted in better DFS but not OS, for patients with stage I-III disease (n = 16,557). Conclusion: Over the past few decades, updates in elements in pathological reports, as well as the development of standardized tests for MMR/MSI status and RAS/BRAF gene mutations have significantly improved patient outcomes.
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- 2024
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15. Deep learning on tertiary lymphoid structures in hematoxylin-eosin predicts cancer prognosis and immunotherapy response
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Ziqiang Chen, Xiaobing Wang, Zelin Jin, Bosen Li, Dongxian Jiang, Yanqiu Wang, Mengping Jiang, Dandan Zhang, Pei Yuan, Yahui Zhao, Feiyue Feng, Yicheng Lin, Liping Jiang, Chenxi Wang, Weida Meng, Wenjing Ye, Jie Wang, Wenqing Qiu, Houbao Liu, Dan Huang, Yingyong Hou, Xuefei Wang, Yuchen Jiao, Jianming Ying, Zhihua Liu, and Yun Liu
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Tertiary lymphoid structures (TLSs) have been associated with favorable immunotherapy responses and prognosis in various cancers. Despite their significance, their quantification using multiplex immunohistochemistry (mIHC) staining of T and B lymphocytes remains labor-intensive, limiting its clinical utility. To address this challenge, we curated a dataset from matched mIHC and H&E whole-slide images (WSIs) and developed a deep learning model for automated segmentation of TLSs. The model achieved Dice coefficients of 0.91 on the internal test set and 0.866 on the external validation set, along with intersection over union (IoU) scores of 0.819 and 0.787, respectively. The TLS ratio, defined as the segmented TLS area over the total tissue area, correlated with B lymphocyte levels and the expression of CXCL13, a chemokine associated with TLS formation, in 6140 patients spanning 16 tumor types from The Cancer Genome Atlas (TCGA). The prognostic models for overall survival indicated that the inclusion of the TLS ratio with TNM staging significantly enhanced the models’ discriminative ability, outperforming the traditional models that solely incorporated TNM staging, in 10 out of 15 TCGA tumor types. Furthermore, when applied to biopsied treatment-naïve tumor samples, higher TLS ratios predicted a positive immunotherapy response across multiple cohorts, including specific therapies for esophageal squamous cell carcinoma, non-small cell lung cancer, and stomach adenocarcinoma. In conclusion, our deep learning-based approach offers an automated and reproducible method for TLS segmentation and quantification, highlighting its potential in predicting immunotherapy response and informing cancer prognosis.
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- 2024
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16. Efficacy of acupuncture as an adjunctive treatment to patients with stable COPD: a multicenter, randomized, sham-controlled trial protocol
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Liuyang Huang, Sha Yang, Guixing Xu, Qin Luo, Chunyan Yang, Hao Tian, Yilin Liu, Zhuo Zhou, Fengyuan Huang, Siyao Gong, Qian Li, Xin Yu, Ming Chen, Dan Huang, Yunyu Liu, Juan Tang, Ruixin Zhang, Xin Sun, Guangbing Lu, Chunfang Zeng, Shuangchun Ai, Bin Li, Jian qin Chen, Quan Luo, Chan Xiong, Zhi Zou, Qiang Hu, Xiaochao Luo, Ling Li, Mingsheng Sun, Fang Zeng, and Fanrong Liang
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Acupuncture ,COPD ,Randomized controlled trial ,Protocol ,Other systems of medicine ,RZ201-999 - Abstract
Abstract Background Chronic obstructive pulmonary disease (COPD) is a common respiratory disease and the third leading cause of death worldwide. Previous evidence has shown that acupuncture may be an effective complementary alternative therapy for stable COPD. However, large-sample, rigorously designed long-term follow-up studies still need to be completed. Notably, the relationship between the frequency of acupuncture and clinical efficacy in studies on acupuncture for stable COPD still needs further validation. This study aims to evaluate the efficacy and safety of acupuncture for stable COPD and further investigate the dose–effect relationship of acupuncture. Methods/design This is a multicenter, randomized, controlled trial that uses central randomization to randomly allocate 550 participants in a 1:1:1:1:1 ratio to once a week acupuncture group, twice a week acupuncture group, three times a week acupuncture group, sham acupuncture group and waiting-list control group. The sham acupuncture group will receive placebo acupuncture treatments three times per week, and the waiting-list control group will not receive any form of acupuncture intervention. The study consists of a 2-week baseline, 12-week of treatment, and 52-week of follow-up. Patients with COPD between 40 to 80 years old who have received stable Western medication within the previous 3 months and have had at least 1 moderate or severe acute exacerbation within the past 1 year will be included in the study. Basic treatment will remain the same for all participants. The primary outcome is the proportion of responders at week 12. Secondary outcomes include the proportion of responders at week 64, change in the St. George's Respiratory Questionnaire (SGRQ) Scale, change in the Modified-Medical Research Council (mMRC) Scale, change in the COPD Assessment Test (CAT) Scale, change in the Lung Function Screening Indicators (LFSI), change in the 6-min walk distance (6-MWD), change in Short-Form 36 Health Survey (SF-36) Scale, the number of moderate and severe acute exacerbations and adverse event rate during the follow-up period. Discussion This study will provide robust evidence on whether acupuncture is safe and effective for treating stable COPD. Meanwhile, comparing the differences in efficacy between different acupuncture frequencies will further promote the optimization of acupuncture for stable COPD. Trial registration This study was registered in the Chinese Clinical Trial Registry (ChiCTR2200058757), on April 16, 2022.
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- 2024
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17. Bioorthogonal microglia-inspired mesenchymal stem cell bioengineering system creates livable niches for enhancing ischemic stroke recovery via the hormesis
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Jianpei Xu, Yinzhe Sun, Yang You, Yuwen Zhang, Dan Huang, Songlei Zhou, Yipu Liu, Shiqiang Tong, Fenfen Ma, Qingxiang Song, Chengxiang Dai, Suke Li, Jigang Lei, Zhihua Wang, Xiaoling Gao, and Jun Chen
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Ischemic stroke ,Mesenchymal stem cell ,Cell engineering ,Hormesis effect ,Bioorthogonal chemistry ,Microglia ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Mesenchymal stem cells (MSCs) experience substantial viability issues in the stroke infarct region, limiting their therapeutic efficacy and clinical translation. High levels of deadly reactive oxygen radicals (ROS) and proinflammatory cytokines (PC) in the infarct milieu kill transplanted MSCs, whereas low levels of beneficial ROS and PC stimulate and improve engrafted MSCs' viability. Based on the intrinsic hormesis effects in cellular biology, we built a microglia-inspired MSC bioengineering system to transform detrimental high-level ROS and PC into vitality enhancers for strengthening MSC therapy. This system is achieved by bioorthogonally arming metabolic glycoengineered MSCs with microglial membrane-coated nanoparticles and an antioxidative extracellular protective layer. In this system, extracellular ROS-scavenging and PC-absorbing layers effectively buffer the deleterious effects and establish a micro-livable niche at the level of a single MSC for transplantation. Meanwhile, the infarct's inanimate milieu is transformed at the tissue level into a new living niche to facilitate healing. The engineered MSCs achieved viability five times higher than natural MSCs at seven days after transplantation and exhibited a superior therapeutic effect for stroke recovery up to 28 days. This vitality-augmented system demonstrates the potential to accelerate the clinical translation of MSC treatment and boost stroke recovery.
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- 2024
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18. Effects of acetazolamide combined with remote ischemic preconditioning on risk of acute mountain sickness: a randomized clinical trial
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Moqi Liu, Xueqiao Jiao, Rui Li, Jialu Li, Lu Wang, Liyan Wang, Yishu Wang, Chunmei Lv, Dan Huang, Ran Wei, Liming Wang, Xunming Ji, and Xiuhai Guo
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Acute mountain sickness ,Acetazolamide ,Remote ischemic preconditioning ,PDGF ,Medicine - Abstract
Abstract Background We aimed to determine whether and how the combination of acetazolamide and remote ischemic preconditioning (RIPC) reduced the incidence and severity of acute mountain sickness (AMS). Methods This is a prospective, randomized, open-label, blinded endpoint (PROBE) study involving 250 healthy volunteers. Participants were randomized (1:1:1:1:1) to following five groups: Ripc (RIPC twice daily, 6 days), Rapid-Ripc (RIPC four times daily, 3 days), Acetazolamide (twice daily, 2 days), Combined (Acetazolamide plus Rapid-Ripc), and Control group. After interventions, participants entered a normobaric hypoxic chamber (equivalent to 4000 m) and stayed for 6 h. The primary outcomes included the incidence and severity of AMS, and SpO2 after hypoxic exposure. Secondary outcomes included systolic and diastolic blood pressure, and heart rate after hypoxic exposure. The mechanisms of the combined regime were investigated through exploratory outcomes, including analysis of venous blood gas, complete blood count, human cytokine antibody array, ELISA validation for PDGF-AB, and detection of PDGF gene polymorphisms. Results The combination of acetazolamide and RIPC exhibited powerful efficacy in preventing AMS, reducing the incidence of AMS from 26.0 to 6.0% (Combined vs Control: RR 0.23, 95% CI 0.07–0.70, P = 0.006), without significantly increasing the incidence of adverse reactions. Combined group also showed the lowest AMS score (0.92 ± 1.10). Mechanistically, acetazolamide induced a mild metabolic acidosis (pH 7.30 ~ 7.31; HCO3 − 18.1 ~ 20.8 mmol/L) and improved SpO2 (89 ~ 91%) following hypoxic exposure. Additionally, thirty differentially expressed proteins (DEPs) related to immune-inflammatory process were identified after hypoxia, among which PDGF-AB was involved. Further validation of PDGF-AB in all individuals showed that both acetazolamide and RIPC downregulated PDGF-AB before hypoxic exposure, suggesting a possible protective mechanism. Furthermore, genetic analyses demonstrated that individuals carrying the PDGFA rs2070958 C allele, rs9690350 G allele, or rs1800814 G allele did not display a decrease in PDGF-AB levels after interventions, and were associated with a higher risk of AMS. Conclusions The combination of acetazolamide and RIPC exerts a powerful anti-hypoxic effect and represents an innovative and promising strategy for rapid ascent to high altitudes. Acetazolamide improves oxygen saturation. RIPC further aids acetazolamide, which synergistically regulates PDGF-AB, potentially involved in the pathogenesis of AMS. Trial registration ClinicalTrials.gov NCT05023941.
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- 2024
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19. Ganoderma lucidum polysaccharide ameliorates cholesterol gallstone formation by modulating cholesterol and bile acid metabolism in an FXR-dependent manner
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Dan Huang, Shuang Shen, Qian Zhuang, Xin Ye, Yueqin Qian, Zhixia Dong, and Xinjian Wan
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Cholesterol gallstones ,Ganoderma lucidum polysaccharide ,Farnesoid X receptor ,Cholesterol ,Bile acids ,Intestinal flora ,Other systems of medicine ,RZ201-999 - Abstract
Abstract Background Cholesterol gallstone (CG) disease is a worldwide common disease characterized by cholesterol supersaturation in gallbladder bile. Ganoderma lucidum polysaccharide (GLP) has been shown to possess various beneficial effects against metabolic disorders. However, the role and underlying mechanism of GLP in CG formation are still unknown. This study aimed to determine the role of GLP in ameliorating lithogenic diet (LD)-induced CG formation. Methods Mice were fed either a normal chow diet, a LD, or LD supplemented with GLP. Real-time quantitative polymerase chain reaction (RT-qPCR) and western blotting were used to detect the expression of genes involved in cholesterol and bile acid (BA) metabolism. The BA concentrations in the ileum were quantified by liquid chromatography-tandem mass spectrometry (LC–MS/MS). The microbiota in cecal contents were characterized using 16S ribosomal RNA (16S rRNA) gene sequencing. Results GLP effectively alleviated CG formation induced by LD. Specifically, GLP reduced the total cholesterol (TC) levels, increased the total BA levels, and decreased the cholesterol saturation index (CSI) in gallbladder bile. The protective effect of GLP was attributed to the inhibition of farnesoid X receptor (FXR) signaling, increased hepatic BA synthesis and decreased hepatic cholesterol synthesis and secretion. GLP also altered the BA composition in the ileum, reducing FXR-agonistic BAs and increasing FXR-antagonistic BAs, which may contribute to the inhibition of intestinal FXR signaling. Additionally, GLP improved dysbiosis of the intestinal flora and reduced the serum levels of hydrogen sulfide (H2S), a bacterial metabolite that can induce hepatic FXR, thereby inhibiting hepatic FXR signaling. Moreover, the protective effect of GLP against CG formation could be reversed by both the global and gut-restricted FXR agonists. Conclusions Taken together, GLP ameliorates CG formation by regulating cholesterol and BA metabolism in an FXR-dependent manner. Our study demonstrates that GLP may be a potential strategy for the prevention against CG disease.
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- 2024
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20. Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships
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Dong-Mei Li, Yan-Gu Pan, Hai-Lin Liu, Bo Yu, Dan Huang, and Gen-Fa Zhu
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Costaceae ,Chloroplast genome ,Comparative genomics ,Genome evolution ,Phylogenetic relationships ,Divergence time ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Costaceae, commonly known as the spiral ginger family, consists of approximately 120 species distributed in the tropical regions of South America, Africa, and Southeast Asia, of which some species have important ornamental, medicinal and ecological values. Previous studies on the phylogenetic and taxonomic of Costaceae by using nuclear internal transcribed spacer (ITS) and chloroplast genome fragments data had low resolutions. Additionally, the structures, variations and molecular evolution of complete chloroplast genomes in Costaceae still remain unclear. Herein, a total of 13 complete chloroplast genomes of Costaceae including 8 newly sequenced and 5 from the NCBI GenBank database, representing all three distribution regions of this family, were comprehensively analyzed for comparative genomics and phylogenetic relationships. Result The 13 complete chloroplast genomes of Costaceae possessed typical quadripartite structures with lengths from 166,360 to 168,966 bp, comprising a large single copy (LSC, 90,802 − 92,189 bp), a small single copy (SSC, 18,363 − 20,124 bp) and a pair of inverted repeats (IRs, 27,982 − 29,203 bp). These genomes coded 111 − 113 different genes, including 79 protein-coding genes, 4 rRNA genes and 28 − 30 tRNAs genes. The gene orders, gene contents, amino acid frequencies and codon usage within Costaceae were highly conservative, but several variations in intron loss, long repeats, simple sequence repeats (SSRs) and gene expansion on the IR/SC boundaries were also found among these 13 genomes. Comparative genomics within Costaceae identified five highly divergent regions including ndhF, ycf1-D2, ccsA-ndhD, rps15-ycf1-D2 and rpl16-exon2-rpl16-exon1. Five combined DNA regions (ycf1-D2 + ndhF, ccsA-ndhD + rps15-ycf1-D2, rps15-ycf1-D2 + rpl16-exon2-rpl16-exon1, ccsA-ndhD + rpl16-exon2-rpl16-exon1, and ccsA-ndhD + rps15-ycf1-D2 + rpl16-exon2-rpl16-exon1) could be used as potential markers for future phylogenetic analyses and species identification in Costaceae. Positive selection was found in eight protein-coding genes, including cemA, clpP, ndhA, ndhF, petB, psbD, rps12 and ycf1. Maximum likelihood and Bayesian phylogenetic trees using chloroplast genome sequences consistently revealed identical tree topologies with high supports between species of Costaceae. Three clades were divided within Costaceae, including the Asian clade, Costus clade and South American clade. Tapeinochilos was a sister of Hellenia, and Parahellenia was a sister to the cluster of Tapeinochilos + Hellenia with strong support in the Asian clade. The results of molecular dating showed that the crown age of Costaceae was about 30.5 Mya (95% HPD: 14.9 − 49.3 Mya), and then started to diverge into the Costus clade and Asian clade around 23.8 Mya (95% HPD: 10.1 − 41.5 Mya). The Asian clade diverged into Hellenia and Parahellenia at approximately 10.7 Mya (95% HPD: 3.5 − 25.1 Mya). Conclusion The complete chloroplast genomes can resolve the phylogenetic relationships of Costaceae and provide new insights into genome structures, variations and evolution. The identified DNA divergent regions would be useful for species identification and phylogenetic inference in Costaceae.
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- 2024
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21. Astaxanthin attenuates doxorubicin-induced liver injury via suppression of ferroptosis in rats
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Bowen Yin, Jingyi Ren, Xuanyi Liu, Miaomiao Lu, Dan Huang, Yadong Zhang, Jinshi Zuo, Rui Wen, Huanting Pei, Siqi Zhu, Zhenao Zhang, Ziyi Wang, and Yuxia Ma
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Astaxanthin ,Doxorubicin ,Hepatotoxicity ,Iron accumulation ,Ferroptosis ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Hepatotoxicity is an significant side effect of doxorubicin (DOX), while astaxanthin (ASX) has the anti-liver injury biological functions. In this study, we utilized in vivo and in vitro methods to investigate the protective effect of ASX against DOX-induced hepatotoxicity and elucidate its potential mechanism. Our researchers measured liver injury indicators and the expression of ferroptosis-related protein (transferrin receptor 1 (TFRC), ferroportin 1 (FPN1), ferritin light chain (FTL), ferritin heavy chain-1 (FTH1), glutathione peroxidase 4 (GPX4), and solute carrier family 7 member 11 (SLC7A11)) in rats and HepG2 cells. We found that ASX could effectively reduce ferroptosis level and relieve a range of DOX-caused manifestations of liver injury, including inflammation and oxidative damage. ASX may play the same role as ferroptosis inhibitor, Fer-1 and DFP, in this process. The findings demonstrated that the intervention with ASX ameliorated the DOX-induced liver injury by mitigating the DOX-induced ferroptosis through inhibiting iron accumulation.
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- 2024
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22. Diabetes and gastric cancer incidence and mortality in the Asia Cohort Consortium: A pooled analysis of more than a half million participants
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Katherine De la Torre, Minkyo Song, Sarah Krull Abe, Md. Shafiur Rahman, Md. Rashedul Islam, Eiko Saito, Sukhong Min, Dan Huang, Yu Chen, Prakash C. Gupta, Norie Sawada, Akiko Tamakoshi, Xiao‐Ou Shu, Wanqing Wen, Ritsu Sakata, Jeongseon Kim, Chisato Nagata, Hidemi Ito, Sue K. Park, Myung‐Hee Shin, Mangesh S. Pednekar, Shoichiro Tsugane, Takashi Kimura, Yu‐Tang Gao, Hui Cai, Keiko Wada, Isao Oze, Aesun Shin, Yoon‐Ok Ahn, Habibul Ahsan, Paolo Boffetta, Kee Seng Chia, Keitaro Matsuo, You‐Lin Qiao, Nathaniel Rothman, Wei Zheng, Manami Inoue, and Daehee Kang
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Asia ,diabetes ,gastric cancer ,incidence ,mortality ,prospective studies ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Abstract Background Evidence suggests a possible link between diabetes and gastric cancer risk, but the findings remain inconclusive, with limited studies in the Asian population. We aimed to assess the impact of diabetes and diabetes duration on the development of gastric cancer overall, by anatomical and histological subtypes. Methods A pooled analysis was conducted using 12 prospective studies included in the Asia Cohort Consortium. Among 558 981 participants (median age 52), after a median follow‐up of 14.9 years and 10.5 years, 8556 incident primary gastric cancers and 8058 gastric cancer deaths occurred, respectively. Cox proportional hazard regression models were used to estimate study‐specific hazard ratios (HRs) and 95% confidence intervals (CIs) and pooled using random‐effects meta‐analyses. Results Diabetes was associated with an increased incidence of overall gastric cancer (HR 1.15, 95% CI 1.06–1.25). The risk association did not differ significantly by sex (women vs men: HR 1.31, 95% CI 1.07–1.60 vs 1.12, 1.01–1.23), anatomical subsites (noncardia vs cardia: 1.14, 1.02–1.28 vs 1.17, 0.77–1.78) and histological subtypes (intestinal vs diffuse: 1.22, 1.02–1.46 vs 1.00, 0.62–1.61). Gastric cancer risk increased significantly during the first decade following diabetes diagnosis (HR 4.70, 95% CI 3.77–5.86), and decreased with time (nonlinear p
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- 2024
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23. Recent advances in predicting acute mountain sickness: from multidimensional cohort studies to cutting-edge model applications
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Boyuan Wang, Shanji Chen, Jinfeng Song, Dan Huang, and Gexin Xiao
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high-altitude illnesses ,acute mountain sickness ,proactive health ,comorbidity ,prediction ,cohort data ,Physiology ,QP1-981 - Abstract
High-altitude illnesses, encompassing a spectrum of health threats including Acute Mountain Sickness (AMS), pose significant challenges to individuals exposed to high altitude environments, necessitating effective prophylaxis and immediate management. Given the variability in individual responses to these conditions, accurate prediction of high-altitude illnesses onset is of paramount importance. This review systematically consolidates recent advancements in research on predicting AMS by evaluating existing cohort data, predictive models, and methodologies, while also delving into the application of emerging technologies. Through a thorough analysis of scholarly literature, we discuss traditional prediction methods anchored in physiological parameters (e.g., heart rate, respiratory frequency, blood pressure) and biochemical markers, as well as the integration and utility of novel technologies such as biosensors, genetic testing, and artificial intelligence within high-altitude prediction research. While conventional pre-diction techniques have been extensively used, they are often constrained by limitations in accuracy, reliability, and multifactorial influences. The advent of these innovative technologies holds promise for more precise individual risk assessments and personalized preventive and therapeutic strategies across various forms of AMS. Future research endeavors must pivot decisively towards the meticulous identification and stringent validation of innovative predictive biomarkers and models. This strategic re-direction should catalyze intensified interdisciplinary cooperation to significantly deepen our mechanistic insights into the pathogenesis of AMS while refining existing prediction methodologies. These groundbreaking advancements harbor the potential to fundamentally transform preventive and therapeutic frameworks for high-altitude illnesses, ultimately securing augmented safety standards and wellbeing for individuals operating at elevated altitudes with far-reaching global implications.
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- 2024
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24. LncRNA IRAIN overcomes imatinib resistance in chronic myeloid leukemia via NF-κB/CD44 pathway inhibition
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Xijia Wang, Yutong Hou, Yizhu Lyu, Jiayin Zhou, Xin Zhang, Mohammad Arian Hassani, Dan Huang, Zhijia Zhao, Dong Zhou, Fang Xie, Xuehong Zhang, and Jinsong Yan
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Molecular biology ,Cell biology ,Cancer ,Science - Abstract
Summary: The development of tyrosine kinase inhibitors (TKIs) has revolutionarily increased the overall survival of patients with chronic myeloid leukemia (CML). However, drug resistance remains a major obstacle. Here, we demonstrated that a BCR-ABL1-independent long non-coding RNA, IRAIN, is constitutively expressed at low levels in CML, resulting in imatinib resistance. IRAIN knockdown decreased the sensitivity of CD34+ CML blasts and cell lines to imatinib, whereas IRAIN overexpression significantly increased sensitivity. Mechanistically, IRAIN downregulates CD44, a membrane receptor favorably affecting TKI resistance, by binding to the nuclear factor kappa B subunit p65 to reduce the expression of p65 and phosphorylated p65. Therefore, the demethylating drug decitabine, which upregulates IRAIN, combined with imatinib, formed a dual therapy strategy which can be applied to CML with resistance to TKIs.
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- 2024
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25. Rockburst prediction and early warning for a highway tunnel excavated by TBM based on microseismic monitoring
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Jian Zhao, Dan Huang, Yongshun Cai, Dengxia Huang, Xiaolong Zhou, Fei Wang, and Yuxiang Pan
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rockburst prediction ,microseismic monitoring ,cloud service platform ,rockburst risk level ,prediction criteria ,Science - Abstract
A newly developed microseismic (MS) monitoring system was employed in the Tianshan-Shengli tunnel to detect MS activities and then predict and provide early warning of rockburst disasters. The system not only has the advantages of accuracy of artificial analysis but also real-time analysis and warnings. The positioning accuracy for MS events is approximately 5–10 m. A new sensor installation scheme was proposed to achieve fast sensor installation and recovery, taking advantage of semicircular steel tubes and hose clamps. In addition, the rockburst risk level prediction criteria adopted multiple evaluation indexes such as MS event energy and moment magnitude and number, and it revealed that the evolution of maximum energy has a good positive correlation with that of maximum moment magnitude through analyzing the monitored MS events. It also showed that the rockburst generally occurred 2 days after the rock mass was exposed by the tunnel boring machine (TBM) tail shield and belonged to the delayed rockburst category, according to the field statistical results. The preliminary application cases indicated that the rockburst prediction and early warning based on MS monitoring agree with the site survey results. Therefore, the new MS monitoring system is a reliable tool for predicting and providing early warnings of rockburst disasters.
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- 2024
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26. Infrared drying characteristics and optimization of ginseng
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Yixiao Zhang, Yijun Lu, Dan Huang, Hangyi Zhao, Shuai Huang, Liqiang Zhang, Guiliang Gong, and Lijun Li
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Color change ,Drying rate ,Infrared drying ,Specific energy consumption ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Fresh ginseng has a high moisture content and is easy to be deteriorated, thus an effective drying method is needed. Infrared drying is known as low energy consumption, and high heat transfer, thus the far infrared (FIR) and near infrared (NIR) drying characteristics of ginseng were investigated and compared. Influences of infrared temperature, radiation distance, and slice thickness on the drying kinetics, specific energy consumption, color change and rehydration ratio were analyzed. Results indicated that the drying rate of ginseng increased with increasing infrared temperature and decreasing radiation distance and slice thickness. The drying time under FIR was shortened by 33.3%, 25% and 20% at 40 °C, 50 °C, 60 °C compared to that under NIR, indicating that the drying efficiency of FIR was superior to that of NIR and with the decrease of temperature, this improvement became more obvious. The specific energy consumption can be reduced by up to 40% under FIR and the infrared drying was much more energy-efficient than hot air drying, with an energy reduction by up to 51.1%. Optimization of FIR drying showed that the optimal conditions were at a drying temperature of 50 °C, a slice thickness of 2 mm and a radiation distance of the 4th layer.
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- 2024
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27. Referral criteria of the SPOT Vision Screener for children under 6 years old
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Dan Huang, Qi Yan, Ji Chen, Rui Li, Zhu-Jian Wu, Hui Zhu, Pei-Bin Zhang, and Hu Liu
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amblyopia ,refractive screening ,children ,spot vision screener ,Ophthalmology ,RE1-994 - Abstract
AIM: To revise the referral criteria for the SPOT Vision Screener in children under 6 years old and assessed its accuracy based on the American Association for Pediatric Ophthalmology and Strabismus(AAPOS)uniform guidelines for instrument-based pediatric vision screen validation 2021.METHODS: Children who visited the Maternal and Child Health Center of Yuhuatai District in Nanjing city from January 2022 to April 2023 were included in the study and underwent SPOT refractive screening, cycloplegic retinoscopy, and other examinations. Abnormal children were defined according to AAPOS guidelines with amblyopia risk factors(ARFs)and visually significant refractive error(VSRE). Receiver operating characteristic(ROC)curve was used to calculate the optimal referral criteria and compared with manufacturer criteria, Wu's criteria, and Peterseim's criteria.RESULTS: A total of 959 children were examined, with 342 in the
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- 2023
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28. Dual-engineered cartilage-targeting extracellular vesicles derived from mesenchymal stem cells enhance osteoarthritis treatment via miR-223/NLRP3/pyroptosis axis: Toward a precision therapy
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Weixuan Liu, Anqi Liu, Xujun Li, Ziyang Sun, Zhenghua Sun, Yaru Liu, Gang Wang, Dan Huang, Hao Xiong, Shiyang Yu, Xintao Zhang, and Cunyi Fan
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Osteoarthritis ,Extracellular vesicles ,NLRP3 inflammasome ,Pyroptosis ,Cartilage-targeting ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Biology (General) ,QH301-705.5 - Abstract
Osteoarthritis (OA) is the most common disabling joint disease with no effective disease modifying drugs. Extracellular vesicles released by several types of mesenchymal stem cells could promote cartilage repair and ameliorate OA pathology in animal models, representing a novel therapeutic strategy. In this study, we demonstrated that extracellular vesicles derived from human umbilical cord mesenchymal stem cells (hUC-EVs) could maintain chondrocyte homeostasis and alleviate OA, and further revealed a novel molecular mechanism of this therapeutic effect. miR-223, which could directly bind with the 3′UTR of NLRP3 mRNA, was found to be a key miRNA for hUC-EVs to exert beneficial effects on inflammation inhibiting and cartilage protecting. For enhancing the effect on mitigating osteoarthritis, exogenous miR-223 was loaded into hUC-EVs by electroporation, and a collagen II-targeting peptide (WYRGRL) was modified onto the surface of hUC-EVs by genetic engineering to achieve a more targeted and efficient RNA delivery to the cartilage. The dual-engineered EVs showed a maximal effect on inhibiting the NLRP3 inflammasome activation and chondrocyte pyroptosis, and offered excellent results for the treatment of OA. This study provides a novel theoretical basis and a promising therapeutic strategy for the application of engineered extracellular vesicles in OA treatment.
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- 2023
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29. Knowledge graph visualization analysis of geological guarantee for coal mines in China based on CiteSpace
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Baohui CHEN, Xu LI, Tiantian WANG, and Dan HUANG
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geological guarantee ,knowledge graph ,intelligent mining ,transparent intelligent geology ,visual analysis ,Mining engineering. Metallurgy ,TN1-997 - Abstract
In order to have a more comprehensive understanding of the research hotspots and development directions in the field of coal mine geological guarantee in China, comprehensively comb the research progress of coal mine geological guarantee technology in China, and analyze the characteristics of its evolution trend, based on the literature database of China National Knowledge Infrastructure(CNKI). CiteSpace technology was used to construct the scientific knowledge map of 416 literatures on the topics of “geological guarantee” and “transparent geology” in coal mines since 1997. Through the visual analysis of the research authors, scientific research institutions, keyword clustering, keyword evolution trend and other contents, and according to the cluster clues generated by the atlas analysis, a structured perspective of the literature features is carried out, and the research hotspots and trends of coal mine geological support are explored. The results show that: in recent years, the number of publications in the field of transparent geological support shows an overall upward trend, among which geological support, intelligent mining, geological disaster and other keywords have been the hot research hotspots; the researchers and research institutions in the research field have formed a certain group size. At present, universities and related research institutes are the major research institutes. The research stage can be roughly divided into development stage, stable stage and explosive stage.
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- 2023
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30. Long-term outcomes of COVID-19 survivors and an exploratory analysis of factors associated with sequela-free survival of patients treated at Leishenshan Hospital in Wuhan, China
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Dan Huang, Caiyang Chen, Wei Xuan, Shuting Pan, Zhiwei Fu, Jian Chen, Wenhui Li, Xin Jiang, Hongpan Zhao, Xun Zhou, Liyang Zhang, Sihan Chen, Zhaoyan Feng, Xuliang Jiang, Lili Huang, Xiao Zhang, Hui Zhu, Song Zhang, Weifeng Yu, and Diansan Su
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COVID-19 ,Long-term outcomes ,Anaemia treatment ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Purpose While coronavirus disease 2019 (COVID-19) has emerged as a global pandemic, millions of patients with COVID-19 have recovered and returned to their families and work, although the key factors of sequela-free survival remain unknown. Here we determine key factors associated with sequela-free survival of patients with COVID-19. Methods Sequela-free survival is defined as having none of the long-term sequelae measured with the Activity of Daily Living (ADL) Scale, modified Medical Research Council (mMRC) Dyspnoea Scale, New York Heart Association (NYHA) classification, Self-rating Depression Scale (SDS), Carcinologic Handicap Index (CHI) and Modified Telephone Interview for Cognitive Status (TICS-M). Multivariable logistic regression was used to examine the key factors of sequela-free survival. Results The follow-up period for the 464 patients was 10 August to 30 September 2020. Of these, 424 patients completed the assessment of all scales. 30.2% (128 of 424) were categorised as sequela-free at follow-up. The most common sequelae were psychosocial problems (254 [57.7%]), respiratory function abnormality (149 [32.6%]) and cardiac function abnormality (98 [21.5%]). Risk factors associated with COVID-19 sequelae were anaemia on admission, longer duration from the onset of symptoms to admission and increasing of age, whereas anaemia treatment was a protective factor against sequelae. A haemoglobin level of
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- 2023
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31. Systematic dissection of genomic features determining the vast diversity of conotoxins
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Jian-Wei Zheng, Yang Lu, Yu-Feng Yang, Dan Huang, Da-Wei Li, Xiang Wang, Yang Gao, Wei-Dong Yang, Yuanfang Guan, and Hong-Ye Li
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Conus ,Conotoxin ,Gene feature ,Transposon element ,Introgression ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Conus, a highly diverse species of venomous predators, has attracted significant attention in neuroscience and new drug development due to their rich collection of neuroactive peptides called conotoxins. Recent advancements in transcriptome, proteome, and genome analyses have facilitated the identification of conotoxins within Conus’ venom glands, providing insights into the genetic features and evolutionary patterns of conotoxin genes. However, the underlying mechanism behind the extraordinary hypervariability of conotoxins remains largely unknown. Results We analyzed the transcriptomes of 34 Conus species, examining various tissues such as the venom duct, venom bulb, and salivary gland, leading to the identification of conotoxin genes. Genetic variation analysis revealed that a subset of these genes (15.78% of the total) in Conus species underwent positive selection (Ka/Ks > 1, p
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- 2023
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32. Causal relationship between blood metabolites and risk of five infections: a Mendelian randomization study
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Zhengxiao Wei, Qingqing Xiong, Dan Huang, Zhangjun Wu, and Zhu Chen
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Blood metabolites ,Mendelian randomization ,Infections ,Sepsis ,Pneumonia ,Urinary tract infection ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Objective Infectious diseases continue to pose a significant threat in the field of global public health, and our understanding of their metabolic pathogenesis remains limited. However, the advent of genome-wide association studies (GWAS) offers an unprecedented opportunity to unravel the relationship between metabolites and infections. Methods Univariable and multivariable Mendelian randomization (MR) was commandeered to elucidate the causal relationship between blood metabolism and five high-frequency infection phenotypes: sepsis, pneumonia, upper respiratory tract infections (URTI), urinary tract infections (UTI), and skin and subcutaneous tissue infection (SSTI). GWAS data for infections were derived from UK Biobank and the FinnGen consortium. The primary analysis was conducted using the inverse variance weighted method on the UK Biobank data, along with a series of sensitivity analyses. Subsequently, replication and meta-analysis were performed on the FinnGen consortium data. Results After primary analysis and a series of sensitivity analyses, 17 metabolites were identified from UK Biobank that have a causal relationship with five infections. Upon joint analysis with the FinGen cohort, 7 of these metabolites demonstrated consistent associations. Subsequently, we conducted a multivariable Mendelian randomization analysis to confirm the independent effects of these metabolites. Among known metabolites, genetically predicted 1-stearoylglycerol (1-SG) (odds ratio [OR] = 0.561, 95% confidence interval [CI]: 0.403–0.780, P
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- 2023
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33. An Exploratory Study on the Rapid Detection of Volatile Organic Compounds in Gardenia Fruit Using the Heracles NEO Ultra-Fast Gas Phase Electronic Nose
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Wenjing Cai, Wei Zhou, Jiayao Liu, Jing Wang, Ding Kuang, Jian Wang, Qing Long, and Dan Huang
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gardenia fruit ,Heracles NEO ultra-fast gas phase electronic nose ,volatile organic compounds ,difference markers ,hexanal ,Microbiology ,QR1-502 - Abstract
Gardenia fruit is a popular functional food and raw material for natural pigments. It comes from a wide range of sources, and different products sharing the same name are very common. Volatile organic compounds (VOCs) are important factors that affect the flavor and quality of gardenia fruit. This study used the Heracles NEO ultra-fast gas phase electronic nose with advanced odor analysis performance and high sensitivity to analyze six batches of gardenia fruit from different sources. This study analyzed the VOCs to find a way to quickly identify gardenia fruit. The results show that this method can accurately distinguish the odor characteristics of various gardenia fruit samples. The VOCs in gardenia fruit are mainly organic acid esters, ketones, and aldehyde compounds. By combining principal component analysis (PCA) and discriminant factor analysis (DFA), this study found that the hexanal content varied the most in different gardenia fruit samples. The VOCs allowed for the fruit samples to be grouped into two main categories. One fruit sample was quite different from the fruits of other origins. The results provide theoretical support for feasibility of rapid identification and quality control of gardenia fruit and related products in the future.
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- 2024
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34. Collision Avoidance Path Planning and Tracking Control for Autonomous Vehicles Based on Model Predictive Control
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Ding Dong, Hongtao Ye, Wenguang Luo, Jiayan Wen, and Dan Huang
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trajectory tracking ,model predictive control ,active collision avoidance ,adaptive cruise control ,path planning ,alternating direction multiplier method ,Chemical technology ,TP1-1185 - Abstract
In response to the fact that autonomous vehicles cannot avoid obstacles by emergency braking alone, this paper proposes an active collision avoidance method for autonomous vehicles based on model predictive control (MPC). The method includes trajectory tracking, adaptive cruise control (ACC), and active obstacle avoidance under high vehicle speed. Firstly, an MPC-based trajectory tracking controller is designed based on the vehicle dynamics model. Then, the MPC was combined with ACC to design the control strategies for vehicle braking to avoid collisions. Additionally, active steering for collision avoidance was developed based on the safety distance model. Finally, considering the distance between the vehicle and the obstacle and the relative speed, an obstacle avoidance function is constructed. A path planning controller based on nonlinear model predictive control (NMPC) is designed. In addition, the alternating direction multiplier method (ADMM) is used to accelerate the solution process and further ensure the safety of the obstacle avoidance process. The proposed algorithm is tested on the Simulink and CarSim co-simulation platform in both static and dynamic obstacle scenarios. Results show that the method effectively achieves collision avoidance through braking. It also demonstrates good stability and robustness in steering to avoid collisions at high speeds. The experiments confirm that the vehicle can return to the desired path after avoiding obstacles, verifying the effectiveness of the algorithm.
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- 2024
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35. Exploratory Study on Distinguishing Dendrobium Stem and Five Species of Dendrobium Using Heracles Neo Ultra-Fast Gas Phase Electronic Nose
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Yuping Dai, Dan Huang, Ye He, Yun Xiang, and Shunxiang Li
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Dendrobium stem ,Dendrobium ,Heracles Neo ultra-fast gas phase electronic nose ,volatile organic compounds ,PCA ,Euclidean distance ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Dendrobium stem is a valuable food with medicinal and edible properties. Due to its high medicinal value and price, closely related Dendrobium varieties are often sold as imitations on the market. Therefore, there is an urgent need to develop new methods that can quickly identify Dendrobium stem and its closely related species. The Heracles Neo ultra-fast gas phase electronic nose was used in this study to determine and analyze the composition and contents of volatile organic compounds (VOCs) in Dendrobium stem and samples of five other species closely related to it. A total of 20 VOCs were identified, and a fingerprint map of the VOCs was constructed. Principal component analysis (PCA), Euclidean distance, and other methods were used to comprehensively process and analyze the obtained VOC information. The AroChemBase database was also used for qualitative analysis of the compounds. The results showed that there are significant differences in the odor fingerprint spectra of Dendrobium stem and the five other closely related species. The main types of compounds in Dendrobium stem and its five closely related species were organic esters, aldehydes, ketones, and olefins. Among them, 3-methylbutanal and n-butanol were characteristic compounds of the Dendrobium stem sample, while the VOCs acetonitrile and trometamol were present in the five related Dendrobium species samples. The Heracles Neo ultra-fast gas phase electronic nose can quickly and accurately identify Dendrobium stem and its five closely related species. It can also be used for the quality evaluation of Dendrobium stem, providing a theoretical reference for reducing the phenomenon of medicinal confusion in the Dendrobium stem market.
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- 2024
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36. An interpretable deep learning model for identifying the morphological characteristics of dMMR/MSI-H gastric cancer
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Xueyi Zheng, Bingzhong Jing, Zihan Zhao, Ruixuan Wang, Xinke Zhang, Haohua Chen, Shuyang Wu, Yan Sun, Jiangyu Zhang, Hongmei Wu, Dan Huang, Wenbiao Zhu, Jianning Chen, Qinghua Cao, Hong Zeng, Jinling Duan, Yuanliang Luo, Zhicheng Li, Wuhao Lin, Runcong Nie, Yishu Deng, Jingping Yun, Chaofeng Li, Dan Xie, and Muyan Cai
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Pathology ,Diagnostics ,Cancer ,Machine learning ,Science - Abstract
Summary: Accurate tumor diagnosis by pathologists relies on identifying specific morphological characteristics. However, summarizing these unique morphological features in tumor classifications can be challenging. Although deep learning models have been extensively studied for tumor classification, their indirect and subjective interpretation obstructs pathologists from comprehending the model and discerning the morphological features accountable for classifications. In this study, we introduce a new approach utilizing Style Generative Adversarial Networks, which enables a direct interpretation of deep learning models to detect significant morphological characteristics within datasets representing patients with deficient mismatch repair/microsatellite instability-high gastric cancer. Our approach effectively identifies distinct morphological features crucial for tumor classification, offering valuable insights for pathologists to enhance diagnostic accuracy and foster professional growth.
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- 2024
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37. Explorative study for the rapid detection of Fritillaria using gas chromatography-ion mobility spectrometry
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Yuping Dai, Shanshuo Liu, Li Yang, Ye He, Xiao Guo, Yang Ma, Shunxiang Li, and Dan Huang
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Fritillaria ,gas chromatography-ion mobility spectrometry ,PCA ,CA ,PLS-DA ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Fritillaria is a well-known health-promoting food, but it has many varieties and its market circulation is chaotic. In order to explore the differences in volatile organic compounds (VOCs) among different varieties of Fritillaria and quickly and accurately determine the variety of Fritillaria, this study selected six varieties of Fritillaria and identified and analyzed their volatile components using gas chromatography-ion mobility spectrometry (GC-IMS), establishing the characteristic fingerprints of VOCs in Fritillaria. In all samples, a total of 76 peaks were detected and 67 VOCs were identified. It was found that the composition of VOCs in different varieties of Fritillaria was similar, but the content was different. Combined with chemometric analysis, the differences between VOCs were clearly shown after principal component analysis, cluster analysis, and partial least-squares discriminant analysis. This may provide theoretical guidance for the identification and authenticity determination of different varieties of Fritillaria.
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- 2024
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38. Clinical and economic burden of anxiety/depression among older adult COPD patients: evidence from the COPD-AD China Registry study
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Xuanna Zhao, Gege Liu, Dewei Liu, Li Zou, Qiu Huang, Min Chen, Dongming Li, Bin Wu, Hua Wu, Dan Huang, and Dong Wu
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anxiety ,clinical burden ,COPD ,depression ,economic burden ,Psychiatry ,RC435-571 - Abstract
BackgroundAnxiety and depression are common in patients with chronic obstructive pulmonary disease (COPD), especially older adult patients. This can complicate the disease progression and lead to increased clinical and economic burden. We sought to investigate the clinical and economic burdens associated with the presence of anxious and/or depressive symptoms among older adult COPD patients.MethodsWe screened 579 patients aged over 60 years and diagnosed with COPD via a lung function test following the 2017 Global Initiative Chronic Obstructive Lung Disease (GOLD) guidelines. Anxiety and depression were measured using the Hospital Anxiety and Depression Scale (HADS) through face-to-face interviews at admission. Follow-up was conducted by telephone calls at 6, 12, 18, 24, and 36 months after discharge to assess clinical and economic burden. COPD-anxiety and/or depression patients were matched to patients without anxiety and depression (COPD-only) using propensity scores. Multivariate regression models were used to compare clinical and economic burden between COPD-anxiety and/or depression and COPD-only groups.ResultsCompared with COPD-only patients, COPD patients complicated with anxiety and/or depression had increased clinical burden, including higher COPD-related outpatient visits, COPD-related hospitalizations, and length of COPD-related hospitalizations (p
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- 2024
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39. Numerical and Preliminary In Situ Investigation on Roadway Excavation Using Static Expansion Mechanical Fracturing
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Yin Chen, Zijun Li, Jian Zhao, and Dan Huang
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Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
This paper introduced a new nonexplosive roadway excavation method, combining the reserved free space technology and the static expansion mechanical fracturing technology, where the former is implemented by the gasbag, while the piston splitter is for the latter. The numerical model of roadway excavation was set up via PFC3D to investigate the mechanical fracturing performance, including the single-hole fracturing and the hole network fracturing. The results show that the reasonable hole margin is about 1.0–1.5 m, and the optimal column spacing of the hole network pattern is 1.0 m, after comprehensively analyzing the fracturing performance and the splitting force evolution. Moreover, the mechanical fracturing excavation method was applied to construct a parking chamber in the Kalatongke Mine, to preliminarily verify the feasibility of the static expansion mechanical fracturing technology. The in situ investigation results indicate that the excavation footage is about 0.8 m with the piston splitter when adopting a hole margin of 1.0–1.5 m. To sum up, the preliminary field application and the numerical simulation result both support the feasibility of mechanical fracturing, and the reasonable fracturing hole margin is about 1.0 m.
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- 2024
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40. From transients to permanent residents: the existence of obligate aerobic microorganisms in the goat rumen
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Rongjiao Wang, Dan Huang, Changguo Chen, Dingzhou Song, Hongen Peng, Min He, Xiujun Huang, Zhonghua Huang, Bin Wang, Hai Lan, and Ping Tang
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rumen ,anaerobic microorganisms ,aerobic microorganisms ,volatile fatty acid rumen ,volatile fatty acid ,Microbiology ,QR1-502 - Abstract
The rumen serves as a complex ecosystem, harboring diverse microbial communities that play crucial ecological roles. Because previous studies have predominantly focused on anaerobic microorganisms, limited attention has been given to aerobic microorganisms in the goat rumen. This study aims to explore the diversity of aerobic microorganisms in the rumen and understand their niche and ecological roles. Rumen fluid samples were collected from 6 goats at different time points post-morning feeding. pH, NH3-N, and volatile fatty acid (TVFA) concentrations were measured, while In vitro cultivation of aerobic microorganisms was performed using PDA medium. Internal Transcribed Spacer (ITS) and 16S sequencing unveiled microbial diversity within the rumen fluid samples. Evidence of obligate aerobic microorganisms in the goat rumen suggests their potential contribution to ecological functionalities. Significantly, certain aerobic microorganisms exhibited correlations with TVFA levels, implying their involvement in TVFA metabolism. This study provides evidence of the existence and potential ecological roles of obligate aerobic microorganisms in the goat rumen. The findings underscore the significance of comprehensively deciphering goat rumen microbial communities and their interactions, with aerobes regarded as permanent residents rather than transients. These insights form a solid foundation for advancing our understanding of the intricate interplay between goat and their aerobic microorganisms in the rumen.
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- 2024
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41. Sleep Duration, Comorbidities, and Mortality in Korean Health Examinees: A Prospective Cohort Study
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Sukhong Min, Woo-Kyoung Shin, Katherine De la Torre, Dan Huang, Hyung-Suk Yoon, Aesun Shin, Ji-Yeob Choi, and Daehee Kang
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sleep duration ,mortality ,comorbidity ,prospective studies ,Medicine ,Public aspects of medicine ,RA1-1270 - Abstract
Objectives The association between long sleep duration and mortality is frequently attributed to the confounding influence of comorbidities. Nevertheless, past efforts to account for comorbidities have yielded inconsistent outcomes. The objective of this study was to evaluate this relationship using a large prospective cohort in Korea. Methods The study included 114 205 participants from the Health Examinees Study, who were followed for a median of 9.1 years. A composite comorbidity score was developed to summarize the effects of 21 diseases. Using Cox proportional hazards regression, hazard ratios (HRs) and 95% confidence intervals (CIs) for all-cause, cancer, and cardiovascular mortality associated with sleep duration were estimated. These estimates were adjusted for socio-demographic factors, lifestyle factors, body mass index, and comorbidity score. Additionally, a stratified analysis by subgroups with and without comorbidities was conducted. Results Throughout the follow-up period, 2675 deaths were recorded. After all adjustments, an association was observed between a sleep duration of 8 hours or more and all-cause mortality (HR, 1.10; 95% CI, 1.01 to 1.20). However, no such association was detected in the stratified analysis for the subgroups based on comorbidity status. Conclusions Long sleep duration was found to be associated with all-cause mortality among Koreans, even after adjusting for comorbidities. Additional studies are required to explore the mechanism underlying the association between sleep duration and major causes of mortality.
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- 2023
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42. Global centralised and structured discriminative non‐negative matrix factorisation for hyperspectral unmixing
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Xue Li, Sifan Cao, Dan Huang, Ming Zhang, and Yiwei Li
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clustering ,feature extraction ,hyperspectral unmixing ,local affinity ,non‐negative matrix factorisation ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Computer software ,QA76.75-76.765 - Abstract
Abstract Advances have been achieved in hyperspectral unmixing using the existing manifold Non‐negative Matrix Factorisation methods, although most of these methods only exploit the preliminary structural information, that is, the nearest neighbour graph. Consequently, the performance of these methods would be degraded when considering only the geometrical structure due to the diverse distribution of the hyperspectral data, that is, the close pixels could belong to different categories or the distant points could be sampled from the same classes. In this context, the present study worked from the perspective of both global and local data relationships to develop and propose a novel approach—the Global centralised and Structured discriminative Non‐negative Matrix Factorisation (GSNMF)—to achieve a further effective representation of hyperspectral unmixing. GSNMF involved maintaining the global centralised clustering and the local structured discriminative regularisation, based on which it could perfectly mine the structure information and drive a discriminative representation of the data. Experiments comparing the application of GSNMF and the state‐of‐the‐art methods to synthetic data demonstrated the superiority of GSNMF. In addition, the consistency of the fractional abundances obtained using GSNMF with the real distributions of spectral data was evaluated on two real‐world datasets.
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- 2023
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43. Causal relationships between obesity and pancreatobiliary diseases: a two-sample Mendelian randomization study
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Dan Huang, Yu Liu, Wenjun Gong, and Jian Zou
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Body mass index ,Waist circumference ,Hip circumference ,Waist-to-hip ratio ,Obesity ,Pancreatobiliary diseases ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Previous observational studies have investigated the relationship between obesity and the biliary tract and pancreas. The causality, however, is still to be confirmed. This study was designed to explore the causality between obesity which included body mass index(BMI), circumference (WC), hip circumference (HC) and waist-to-hip ratio (WHR), and pancreatobiliary diseases with a Two-Sample Mendelian Randomization(MR) analysis. single-nucleotide polymorphisms used in our study were derived from genome-wide association studies (GWAS). The inverse variance weighted was the dominated method to evaluate the causality. The heterogeneity was validated by Cochran's Q test. The pleiotropy was validated by MR-Egger regression and MR-PRESSO. The stability and reliability of the results were illustrated by the ‘leave-one-out’sensitivity analysis. The MR results explored positive causal effects of BMI (OR: 1.021; 95% CI: from 1.016 to 1.027; P = 4.25 × 10−15) and WC (OR: 1.021; 95% CI: from 1.015 to 1.028; P = 1.65 × 10−10) on pancreatobiliary diseases. However, no causality existed between HC, WHR and pancreatobiliary diseases. This study reminded that general obesity and abdominal obesity required weight loss to prevent pancreatic biliary disease.
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- 2023
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44. Prevalence of Fundus Tessellation and Its Screening Based on Artificial Intelligence in Chinese Children: the Nanjing Eye Study
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Dan Huang, Yingxiao Qian, Qi Yan, Saiguang Ling, Zhou Dong, Xin Ke, Haohai Tong, Tengfei Long, Rui Li, Hu Liu, and Hui Zhu
- Subjects
Fundus tessellation ,Fundus tessellated density ,Artificial intelligence ,School children ,Prevalence ,Ophthalmology ,RE1-994 - Abstract
Abstract Introduction To investigate the prevalence of fundus tessellation (FT), and the threshold for screening FT using an artificial intelligence (AI) technology in Chinese children. Methods The Nanjing Eye Study was a population-based cohort study conducted in children born between September 2011 and August 2012 in Yuhuatai District of Nanjing. The data presented in this paper were obtained in 2019, when these children were 7 years old and underwent 45° non-mydriatic fundus photography. FT in whole fundus, macular area, and peripapillary area was manually recognized from fundus photographs and classified into three grades. Fundus tessellation density (FTD) in these areas was obtained by calculating the average exposed choroid area per unit area using artificial intelligence (AI) technology based on fundus photographs. The threshold for screening FT using FTD was determined using receiver operating characteristic (ROC) curve analysis. Results Among 1062 enrolled children (mean [± standard deviation] spherical equivalent: − 0.28 ± 0.70 D), the prevalence of FT was 42.18% in the whole fundus (grade 1: 36.53%; grade 2: 5.08%; grade 3: 0.56%), 45.57% in macular area (grade 1: 43.5%; grade 2: 1.60%; grade 3: 0.50%), and 49.72% in peripapillary area (grade 1: 44.44%; grade 2: 4.43%; grade 3: 0.85%), respectively. The threshold value of FTD for screening severe FT (grade ≥ 2) was 0.049 (area under curve [AUC] 0.985; sensitivity 98.3%; specificity 92.3%) in the whole fundus, 0.069 (AUC 0.987; sensitivity 95.5%; specificity 96.2%) in the macular area, and 0.094 (AUC 0.980; sensitivity 94.6%; specificity 94.2%) in the peripapillary area, respectively. Conclusion Fundus tessellation affected approximately 40 in 100 children aged 7 years in China, indicating the importance and necessity of early FT screening. The threshold values of FTD provided by this study had high accuracy for detecting severe FT and might be applied for rapid screening.
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- 2023
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45. The multifaceted role of placental growth factor in the pathogenesis and progression of bronchial asthma and pulmonary fibrosis: Therapeutic implications
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Dan Huang, Gege Liu, Zhiyi Xu, Shushu Chen, Cuili Wang, Dewei Liu, Jiahao Cao, Junfen Cheng, Bin Wu, and Dong Wu
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AHR ,Airway remodeling ,Bronchial asthma ,Chronic airway inflammation ,PlGF ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Placental growth factor (PlGF) is a glycosylated dimeric protein that is homologous to vascular endothelial growth factor (VEGF). PlGF expression is upregulated in patients with bronchial asthma, suggesting that it plays a role in the pathogenesis of asthma. Bronchial asthma is characterized by chronic airway inflammation and airway hyperresponsiveness (AHR). After recurrent asthma attacks, pulmonary fibrosis develops and leads to airway remodeling and a further decline in lung function. In this review, we focused on the pivotal role of PlGF in chronic airway inflammation, AHR, and airway remodeling during bronchial asthma. Furthermore, we summarized data showing that PlGF may be a potential therapeutic target in bronchial asthma.
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- 2023
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46. Material and Microstructure Analysis of Wood Color Paintings from Shaanxi Cangjie Temple, China
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Dan Huang, Kezhu Han, Gele Teri, Cong Cheng, Yunpeng Qi, and Yuhu Li
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CangJie temple ,color paintings ,pigments and binders ,Raman spectra ,FTIR spectra ,Py-GC/MS ,Organic chemistry ,QD241-441 - Abstract
Cangjie Temple was built to commemorate Cangjie, the legendary inventor of Chinese characters. It stands as one of the few remaining temples in China dedicated to the invention and creation of writing. In this study, the material properties of wooden paintings from the Cangjie temple were characterized using Polarized Light Microscopy (PLM), Scanning Electron Microscopy coupled with Energy Dispersive X-ray Spectroscopy (SEM-EDS), Micro-confocal Raman Spectroscopy, X-ray Diffraction (XRD), Fourier Transform Infrared Spectroscopy (FTIR), and Pyrolysis-Gas Chromatography-Mass Spectrometry (Py-GC/MS). It was confirmed that the pigments of the paintings included cinnabar, lapis lazuli, lead white, Paris green, and carbon black. The proteinaceous glue was used as an adhesive in the pigment samples, with tung oil likely being utilized as a primer for the wooden structures before painting. This study not only provides valuable data support for the conservation and restoration of the architectural features of Cangjie Temple but also provides useful reference for the maintenance and inheritance of similar ancient buildings.
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- 2024
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47. Explorative Study on Volatile Organic Compounds of Cinnamon Based on GC-IMS
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Yu Pan, Liya Qiao, Shanshuo Liu, Ye He, Danna Huang, Wuwei Wu, Yingying Liu, Lu Chen, and Dan Huang
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cinnamon ,volatile organic compounds ,GC-IMS ,PCA ,CA ,PLS-DA ,Microbiology ,QR1-502 - Abstract
Cinnamon is one of the most popular spices worldwide, and volatile organic compounds (VOCs) are its main metabolic products. The misuse or mixing of cinnamon on the market is quite serious. This study used gas chromatography-ion migration spectroscopy (GC-IMS) technology to analyze the VOCs of cinnamon samples. The measurement results showed that 66 VOCs were detected in cinnamon, with terpenes being the main component accounting for 45.45%, followed by aldehydes accounting for 21.21%. The content of esters and aldehydes was higher in RG-01, RG-02, and RG-04; the content of alcohols was higher in RG-01; and the content of ketones was higher in RG-02. Principal component analysis, cluster analysis, and partial least squares regression analysis can be performed on the obtained data to clearly distinguish cinnamon. According to the VIP results of PLS-DA, 1-Hexanol, 2-heptanone, ethanol, and other substances are the main volatile substances that distinguish cinnamon. This study combined GC-IMS technology with chemometrics to accurately identify cinnamon samples, providing scientific guidance for the efficient utilization of cinnamon. At the same time, this study is of great significance for improving the relevant quality standards of spices and guiding the safe use of spices.
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- 2024
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48. An Evaluation of the Impact of 60Co Irradiation on Volatile Organic Compounds of Olibanum Using Gas Chromatography Ion Mobility Spectrometry
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Qiao Luo, Shanshuo Liu, Ye He, Jiayao Liu, Xinyu Zhang, Liqiu Zheng, and Dan Huang
- Subjects
olibanum ,60Co irradiation ,volatile organic compounds ,gas chromatography ion mobility spectrometry ,Organic chemistry ,QD241-441 - Abstract
Olibanum is a resinous traditional Chinese medicine that is directly used as a powder. It is widely used in China and is often combined with other traditional Chinese medicine powders to promote blood circulation and relieve pain, as well as to treat rheumatism, rheumatoid arthritis, and osteoarthritis. Powdered traditional Chinese medicine is often easily contaminated by microorganisms and 60Co irradiation is one of the good sterilization methods. Volatile organic compounds (VOCs) are the main active ingredient of olibanum. The aim of this study was to validate the optimum doses of 60Co irradiation and its effect on VOCs. 60Co irradiation was applied in different doses of 0 kGy, 1.5 kGy, 3.0 kGy, and 6.0 kGy. Changes in VOCs were detected using gas chromatography ion mobility spectrometry. A total of 81 VOCs were identified. The odor fingerprint results showed that, with an increase in irradiation dose, most of the VOCs of olibanum changed. Through principal component analysis, cluster analysis, and partial least squares discriminant analysis, it was demonstrated that, at 1.5 kGy, the impact of radiation on the VOCs of olibanum was minimal, indicating this is a relatively good irradiation dose. This study provides a theoretical basis for the irradiation processing and quality control of resinous medicinal materials such as olibanum and it also provides a good reference for irradiation technology development and its application to functional foods, thus making it both significant from a research perspective and useful from an application perspective.
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- 2024
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49. Effect of systemic family psychotherapy on quality of life in patients undergoing postoperative chemotherapy for breast cancer
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Dan Huang, Lixia Yang, Na Peng, and Rui Wang
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Family psychotherapy ,Breast cancer ,Chemotherapy ,Surgery ,RD1-811 - Published
- 2024
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50. Spatial distribution and sources of PAHs in topsoil in the Beiyun River Basin (Beijing section)
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Dan HUANG, Yong HUANG, Yonglong AN, Hui FENG, Zhao SUN, and Huan LI
- Subjects
beiyun river basin ,topsoil ,pahs ,spatial distribution ,pollution sources ,Geology ,QE1-996.5 - Abstract
Organic pollution of polycyclic aromatic hydrocarbons (PAHs) in topsoil has threatened human health and ecological environment. In order to understand the distribution and pollution characteristics of PAHs in topsoil in the Beiyun River Basin in Beijing, an investigation is carried out to examine the contents, distribution trends, spatial distribution and pollution sources of 16 optimal PAHs in topsoil of the study area by means of multivariate statistical methods including the Kriging interpolation, principal component analysis-multiple linear regression and the concentration ratio among certain components. The results are as follows (1) all 16 PAHs are detected, and most of them are high loop PAHs (4−6 rings). The total contents of PAHs in topsoil range from 10.5 to 19466.5 μg/kg, about 29.63% of the samples are polluted in the study area. (2) The PAHs contents in topsoil show a trend of higher in the middle and lower at ends in both east-west and south-north direction. In terms of spatial distribution, the PAHs contents in topsoil are higher in the northern region and the central urban area, while the PAHs contents are lower in other areas. Due to the accumulation of PAHs caused by human activities at some points, point source pollution or local pollution exist. (3)The ratio of specific PAHs components and principal component analysis indicate that the sources of 16 PAHs in the study area are mainly coal, biomass combustion and traffic combustion. Multiple linear regression shows that the contribution rates of the two are 89% and 11% respectively. The research results can provide strong support for pollution prevention and control, land quality evaluation and territorial space planning in the study area.
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- 2023
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