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1. Diving into the proteomic atlas of SARS-CoV-2 infected cells

Author

Carregari, Victor C., Reis-de-Oliveira, Guilherme, Crunfli, Fernanda, Smith, Bradley J., de Souza, Gabriela Fabiano, Muraro, Stéfanie Primon, Saia-Cereda, Veronica M., Vendramini, Pedro H., Baldasso, Paulo A., Silva-Costa, Lícia C., Zuccoli, Giuliana S., Brandão-Teles, Caroline, Antunes, André, Valença, Aline F., Davanzo, Gustavo G., Virgillio-da-Silva, João Victor, dos Reis Araújo, Thiago, Guimarães, Raphael Campos, Chaim, Felipe David Mendonça, Chaim, Elinton Adami, Kawagosi Onodera, Carolina Mie, Ludwig, Raissa Guimarães, Saccon, Tatiana Dandolini, Damásio, André R. L., Leiria, Luiz Osório S., Vinolo, Marco Aurélio R., Farias, Alessandro S., Moraes-Vieira, Pedro M., Mori, Marcelo A., Módena, José Luiz P., and Martins-de-Souza, Daniel

Published
2024
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3. Plastic-degrading microbial communities reveal novel microorganisms, pathways, and biocatalysts for polymer degradation and bioplastic production

Author

Roman, Ellen Karen Barreto, Ramos, Murilo Antonio, Tomazetto, Geizecler, Foltran, Bruno Botega, Galvão, Matheus Henrique, Ciancaglini, Iara, Tramontina, Robson, de Almeida Rodrigues, Felipe, da Silva, Larissa Soares, Sandano, Ana Luiza Hernandes, Fernandes, Diógenes G. da S., Almeida, Dnane Vieira, Baldo, Denicezar Angelo, de Oliveira Junior, José Martins, Garcia, Wanius, Damasio, André, and Squina, Fabio Marcio

Published
2024
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6. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Author

de Vries, Ronald P, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Amillis, Sotiris, Uchima, Cristiane Akemi, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna A, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo C, Chen, Fusheng, Chen, Wanping, Choi, Cindy, Clum, Alicia, dos Santos, Renato Augusto Corrêa, Damásio, André Ricardo de Lima, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María Laura, Henrissat, Bernard, Hildén, Kristiina S, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen L, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio F, MacCabe, Andrew, Mäkelä, Miia R, Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos P, Mulé, Giuseppina, Ngan, Chew Yee, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean Paul, Overkamp, Karin M, Park, Hee-Soo, Perrone, Giancarlo, Piumi, Francois, Punt, Peter J, Ram, Arthur FJ, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego Mauricio, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Salih, Nadhira S, Samson, Rob A, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio M, Sun, Hui, Susca, Antonia, Todd, Richard B, Tsang, Adrian, Unkles, Shiela E, van de Wiele, Nathalie, van Rossen-Uffink, Diana, Oliveira, Juliana Velasco de Castro, Vesth, Tammi C, Visser, Jaap, Yu, Jae-Hyuk, Zhou, Miaomiao, and Andersen, Mikael R

Subjects
Human Genome, Genetics, Biotechnology, Emerging Infectious Diseases, Infectious Diseases, Adaptation, Biological, Aspergillus, Biodiversity, Biomass, Carbon, Computational Biology, Cytochrome P-450 Enzyme System, DNA Methylation, Fungal Proteins, Gene Expression Regulation, Fungal, Gene Regulatory Networks, Genome, Fungal, Genomics, Humans, Metabolic Networks and Pathways, Molecular Sequence Annotation, Multigene Family, Oxidoreductases, Phylogeny, Plants, Secondary Metabolism, Signal Transduction, Stress, Physiological, Genome sequencing, Comparative genomics, Fungal biology, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics
Abstract

BackgroundThe fungal genus Aspergillus is of critical importance to humankind. Species include those with industrial applications, important pathogens of humans, animals and crops, a source of potent carcinogenic contaminants of food, and an important genetic model. The genome sequences of eight aspergilli have already been explored to investigate aspects of fungal biology, raising questions about evolution and specialization within this genus.ResultsWe have generated genome sequences for ten novel, highly diverse Aspergillus species and compared these in detail to sister and more distant genera. Comparative studies of key aspects of fungal biology, including primary and secondary metabolism, stress response, biomass degradation, and signal transduction, revealed both conservation and diversity among the species. Observed genomic differences were validated with experimental studies. This revealed several highlights, such as the potential for sex in asexual species, organic acid production genes being a key feature of black aspergilli, alternative approaches for degrading plant biomass, and indications for the genetic basis of stress response. A genome-wide phylogenetic analysis demonstrated in detail the relationship of the newly genome sequenced species with other aspergilli.ConclusionsMany aspects of biological differences between fungal species cannot be explained by current knowledge obtained from genome sequences. The comparative genomics and experimental study, presented here, allows for the first time a genus-wide view of the biological diversity of the aspergilli and in many, but not all, cases linked genome differences to phenotype. Insights gained could be exploited for biotechnological and medical applications of fungi.

Published
2017

7. Analysis of the phosphorylome of trichoderma reesei cultivated on sugarcane bagasse suggests post-translational regulation of the secreted glycosyl hydrolase Cel7A

Author

Pedersoli, Wellington Ramos, de Paula, Renato Graciano, Antoniêto, Amanda Cristina Campos, Carraro, Cláudia Batista, Taveira, Iasmin Cartaxo, Maués, David Batista, Martins, Maíra Pompeu, Ribeiro, Liliane Fraga Costa, Damasio, André Ricardo de Lima, Silva-Rocha, Rafael, Filho, Antônio Rossi, and Silva, Roberto N

Published
2021
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8. The profile secretion of Aspergillus clavatus: Different pre-treatments of sugarcane bagasse distinctly induces holocellulases for the lignocellulosic biomass conversion into sugar

Author

de Lucas, Rosymar Coutinho, de Oliveira, Tássio Brito, Lima, Matheus Sanitá, Pasin, Thiago Machado, Scarcella, Ana Sílvia de Almeida, Ribeiro, Liliane Fraga Costa, Carvalho, Caio, Damasio, André Ricardo de Lima, Buckeridge, Marcos Silveira, Prade, Rolf Alexander, Segato, Fernando, and Polizeli, Maria de Lourdes Teixeira de Moraes

Published
2021
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13. Heterologous expression and functional characterization of a GH10 endoxylanase from Aspergillus fumigatus var. niveus with potential biotechnological application

Author

Velasco, Josman, Oliva, Bianca, Mulinari, Evandro José, Quintero, Leidy Patricia, da Silva Lima, Awana, Gonçalves, Aline Larissa, Gonçalves, Thiago Augusto, Damasio, André, Squina, Fabio Marcio, Ferreira Milagres, Adriane Maria, Abdella, Asmaa, Wilkins, Mark R., and Segato, Fernando

Published
2019
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14. Corrigendum to “Plastic-degrading microbial communities reveal novel microorganisms, pathways, and biocatalysts for polymer degradation and bioplastic production” [Sci. Total Environ. 949 (2024) 174876]

Author

Roman, Ellen Karen Barreto, Ramos, Murilo Antonio, Tomazetto, Geizecler, Foltran, Bruno Botega, Galvão, Matheus Henrique, Ciancaglini, Iara, Tramontina, Robson, de Almeida Rodrigues, Felipe, da Silva, Larissa Soares, Sandano, Ana Luiza Hernandes, da S. Fernandes, Diógenes G., Almeida, Dnane Vieira, Baldo, Denicezar Angelo, Santana, Marcel B., Jr, Ienczak, Jaciane L., de Oliveira Junior, José Martins, da Silva, Wanius Garcia, Damasio, André, and Squina, Fabio Marcio

Published
2024
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33. Corrigendum to analysis of the phosphorylome of Trichoderma reesei cultivated on sugarcane bagasse suggests post-translational regulation of the secreted glycosyl hydrolase Cel7A

Author

Pedersoli, Wellington Ramos, Paula, Renato Gracianode, Antoniêto, Amanda Cristina Campos, Carraro, Cláudia Batista, Taveira, Lasmin Cartaxo, Maués, David Batista, Martins, Maíra Pompeu, Ribeiro, Liliane Fraga Costa, Damasio, André Ricardo de Lima, Silva-Rocha, Rafael, Filho, Antônio Rossi, and Silva, Roberto N.

Published
2021
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39. Elevated Glucose Levels Favor SARS-CoV-2 Infection and Monocyte Response through a HIF-1α/Glycolysis-Dependent Axis

Author

Codo, Ana Campos, Davanzo, Gustavo Gastão, Monteiro, Lauar de Brito, de Souza, Gabriela Fabiano, Muraro, Stéfanie Primon, Virgilio-da-Silva, João Victor, Prodonoff, Juliana Silveira, Carregari, Victor Corasolla, de Biagi Junior, Carlos Alberto Oliveira, Crunfli, Fernanda, Jimenez Restrepo, Jeffersson Leandro, Vendramini, Pedro Henrique, Reis-de-Oliveira, Guilherme, Bispo dos Santos, Karina, Toledo-Teixeira, Daniel A., Parise, Pierina Lorencini, Martini, Matheus Cavalheiro, Marques, Rafael Elias, Carmo, Helison R., Borin, Alexandre, Coimbra, Laís Durço, Boldrini, Vinícius O., Brunetti, Natalia S., Vieira, Andre S., Mansour, Eli, Ulaf, Raisa G., Bernardes, Ana F., Nunes, Thyago A., Ribeiro, Luciana C., Palma, Andre C., Agrela, Marcus V., Moretti, Maria Luiza, Sposito, Andrei C., Pereira, Fabrício Bíscaro, Velloso, Licio Augusto, Vinolo, Marco Aurélio Ramirez, Damasio, André, Proença-Módena, José Luiz, Carvalho, Robson Francisco, Mori, Marcelo A., Martins-de-Souza, Daniel, Nakaya, Helder I., Farias, Alessandro S., and Moraes-Vieira, Pedro M.

Published
2020
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42. SARS-CoV-2 infects brain astrocytes of COVID-19 patients and impairs neuronal viability

Author

Crunfli, Fernanda, primary, Carregari, Victor Corasolla, additional, Veras, Flavio Protásio, additional, Vendramini, Pedro Henrique, additional, Valença, Aline Gazzola Fragnani, additional, Antunes, André Saraiva Leão Marcelo, additional, Brandão-Teles, Caroline, additional, Zuccoli, Giuliana da Silva, additional, Reis-de-Oliveira, Guilherme, additional, C.Silva-Costa, Lícia, additional, Saia-Cereda, Verônica Monteiro, additional, Codo, Ana Campos, additional, Parise, Pierina Lorencini, additional, Toledo-Teixeira, Daniel A., additional, Souza, Gabriela Fabiano de, additional, Muraro, Stéfanie Primon, additional, Melo, Bruno Marcel Silva, additional, Almeida, Glaucia M., additional, Firmino, Egidi Mayara Silva, additional, Paiva, Isadora Marques, additional, Silva, Bruna Manuella Souza, additional, Ludwig, Raíssa Guimarães, additional, Ruiz, Gabriel Palermo, additional, Knittel, Thiago Leite, additional, Davanzo, Gustavo Gastão, additional, Gerhardt, Jaqueline Aline, additional, Rodrigues, Patrícia Brito, additional, Forato, Julia, additional, Amorim, Mariene Ribeiro, additional, Silva, Natália Brunetti, additional, Martini, Matheus Cavalheiro, additional, Benatti, Maíra Nilson, additional, Batah, Sabrina, additional, Siyuan, Li, additional, João, Rafael Batista, additional, Silva, Lucas Scardua, additional, Nogueira, Mateus Henrique, additional, Aventurato, Ítalo Karmann, additional, Brito, Mariana Rabelo de, additional, Alvim, Marina, additional, Júnior, José Roberto da Silva, additional, Damião, Lívia Liviane, additional, Stefano, Maria Ercilia de Paula Castilho, additional, Sousa, Iêda Maria Pereira de, additional, Rocha, Elessandra Dias da, additional, Gonçalves, Solange Maria, additional, Silva, Luiz Henrique Lopes da, additional, Bettini, Vanessa, additional, Campos, Brunno de, additional, Ludwing, Guilherme, additional, Viana, Rosa Maria Mendes, additional, Martins, Ronaldo, additional, Vieira, Andre Schwambach, additional, Alves-Filho, José Carlos, additional, Arruda, Eurico, additional, Sebollela, Adriano, additional, Cendes, Fernando, additional, Cunha, Fernando, additional, Damásio, André Ricardo de Lima, additional, Vinolo, Marco Aurélio Ramirez, additional, Munhoz, Carolina, additional, Rehen, Stevens K., additional, Mauad, Thais, additional, Duarte-Neto, Amaro, additional, Silva, Luiz Fernando Ferraz da, additional, Dolhnikoff, Marisa, additional, Saldiva, Paulo, additional, Fabro, Alexandre, additional, Farias, Alessandro S., additional, Moraes-Vieira, Pedro Manoel M., additional, Módena, José Luiz Proença, additional, Yasuda, Clarissa, additional, Mori, Marcelo A., additional, Cunha, Thiago Mattar, additional, and Souza, Daniel Martins de, additional

Published
2020
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43. Morphological, cellular and molecular basis of brain infection in COVID-19 patients

Author

Crunfli, Fernanda, primary, Carregari, Victor Corasolla, additional, Veras, Flavio Protasio, additional, Vendramini, Pedro Henrique, additional, Valença, Aline Gazzola Fragnani, additional, Antunes, André Saraiva Leão Marcelo, additional, Brandão-Teles, Caroline, additional, da Silva Zuccoli, Giuliana, additional, Reis-de-Oliveira, Guilherme, additional, Silva-Costa, Lícia C., additional, Saia-Cereda, Verônica Monteiro, additional, Smith, Bradley Joseph, additional, Codo, Ana Campos, additional, de Souza, Gabriela Fabiano, additional, Muraro, Stéfanie Primon, additional, Parise, Pierina Lorencini, additional, Toledo-Teixeira, Daniel A., additional, de Castro, Ícaro Maia Santos, additional, Melo, Bruno Marcel Silva, additional, Almeida, Glaucia M., additional, Firmino, Egidi Mayara Silva, additional, Paiva, Isadora Marques, additional, Silva, Bruna Manuella Souza, additional, Guimarães, Rafaela Mano, additional, Mendes, Niele D., additional, Ludwig, Raíssa Guimarães, additional, Ruiz, Gabriel Palermo, additional, Knittel, Thiago Leite, additional, Davanzo, Gustavo Gastão, additional, Gerhardt, Jaqueline Aline, additional, Rodrigues, Patrícia Brito, additional, Forato, Julia, additional, Amorim, Mariene Ribeiro, additional, Silva, Natália Brunetti, additional, Martini, Matheus Cavalheiro, additional, Benatti, Maíra Nilson, additional, Batah, Sabrina, additional, Siyuan, Li, additional, João, Rafael Batista, additional, Silva, Lucas Scardua, additional, Nogueira, Mateus Henrique, additional, Aventurato, Ítalo Karmann, additional, de Brito, Mariana Rabelo, additional, Alvim, Marina Koutsodontis Machado, additional, da Silva Júnior, José Roberto, additional, Damião, Lívia Liviane, additional, de Sousa, Iêda Maria Pereira, additional, da Rocha, Elessandra Dias, additional, Gonçalves, Solange Maria, additional, da Silva, Luiz Henrique Lopes, additional, Bettini, Vanessa, additional, de Campos, Brunno Machado, additional, Ludwig, Guilherme, additional, Tavares, Lucas Alves, additional, Pontelli, Marjorie Cornejo, additional, Viana, Rosa Maria Mendes, additional, Martins, Ronaldo, additional, Vieira, Andre S., additional, Alves-Filho, José Carlos, additional, Arruda, Eurico, additional, Podolski-Gondim, Guilherme, additional, Santos, Marcelo Volpon, additional, Neder, Luciano, additional, Cendes, Fernando, additional, Louzada-Junior, Paulo, additional, Oliveira, Renê Donizeti, additional, Cunha, Fernando Queiroz, additional, Damásio, André, additional, Vinolo, Marco Aurélio Ramirez, additional, Munhoz, Carolina Demarchi, additional, Rehen, Stevens K., additional, Nakaya, Helder I, additional, Mauad, Thais, additional, Duarte-Neto, Amaro Nunes, additional, da Silva, Luiz Fernando Ferraz, additional, Dolhnikoff, Marisa, additional, Saldiva, Paulo, additional, Farias, Alessandro S., additional, Moraes-Vieira, Pedro Manoel M., additional, Fabro, Alexandre Todorovic, additional, Sebollela, Adriano S., additional, Módena, José Luiz Proença, additional, Yasuda, Clarissa Lin, additional, Mori, Marcelo A., additional, Cunha, Thiago Mattar, additional, and Martins-de-Souza, Daniel, additional

Published
2020
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44. Redesigning N-glycosylation sites in a GH3 ß-xylosidase improves the enzymatic efficiency

Author

Rubio, Marcelo Ventura, 1991, Terrasan, César Rafael Fanchini, Contesini, Fabiano Jares, Zubieta, Mariane Paludetti, 1985, Gerhardt, Jaqueline Aline, 1990, Gonçalves, Any Elisa de Souza Schmidt, Smith, Bradley Joseph, 1994, Souza, Gustavo Henrique Martins Ferreira de, Dias, Artur Hermano Sampaio, Skaf, Munir Salomão, 1963, Damásio, André Ricardo de Lima, 1983, and UNIVERSIDADE ESTADUAL DE CAMPINAS

Subjects
Glycomutants, Glycosylation, CAZyme, Glycoside hydrolase family 3, Glicosilação, Enzyme secretion, Aspergillus nidulans, Beta-Xylosidase, Artigo de pesquisa
Abstract

Agradecimentos: We thank the LNBio Mass Spectrometry staff for their assistance with LC–MS/MS and Professor Hernandes Faustino de Carvalho Laboratory for his assistance with the immunohistochemistry methodology. We would like to thank Paul Whitford for the simulation and analysis program codes. The simulations were performed at CENAPAD-SP (Centro Nacional de Processamento de Alto Desempenho em São Paulo), under the UNICAMP/FINEP-MCT project. Research was supported by LNBR-Brazilian Biorenewables National Laboratory (CNPEM/MCTIC) using the Characterization of Macromolecules (MAC) open-access facility. The authors thank Espaço da Escrita-Pró-Reitoria de Pesquisa, UNICAMP for the language services provided Abstract: ß-Xylosidases are glycoside hydrolases (GHs) that cleave xylooligosaccharides and/or xylobiose into shorter oligosaccharides and xylose. Aspergillus nidulans is an established genetic model and good source of carbohydrate-active enzymes (CAZymes). Most fungal enzymes are N-glycosylated, which influences their secretion, stability, activity, signalization, and protease protection. A greater understanding of the N-glycosylation process would contribute to better address the current bottlenecks in obtaining high secretion yields of fungal proteins for industrial applications. In this study, BxlB - a highly secreted GH3 ß-xylosidase from A. nidulans, presenting high activity and several N-glycosylation sites - was selected for N-glycosylation engineering. Several glycomutants were designed to investigate the influence of N-glycans on BxlB secretion and function. The non-glycosylated mutant (BxlBnon-glyc) showed similar levels of enzyme secretion and activity compared to the wild-type (BxlBwt), while a partially glycosylated mutant (BxlBN1;5;7) exhibited increased activity. Additionally, there was no enzyme secretion in the mutant in which the N-glycosylation context was changed by the introduction of four new N-glycosylation sites (BxlBCC), despite the high transcript levels. BxlBwt, BxlBnon-glyc, and BxlBN1;5;7 formed similar secondary structures, though the mutants had lower melting temperatures compared to the wild type. Six additional glycomutants were designed based on BxlBN1;5;7, to better understand its increased activity. Among them, the two glycomutants which maintained only two N-glycosylation sites each (BxlBN1;5 and BxlBN5;7) showed improved catalytic efficiency, whereas the other four mutants’ catalytic efficiencies were reduced. The N-glycosylation site N5 is important for improved BxlB catalytic efficiency, but needs to be complemented by N1 and/or N7. Molecular dynamics simulations of BxlBnon-glyc and BxlBN1;5 reveals that the mobility pattern of structural elements in the vicinity of the catalytic pocket changes upon N1 and N5 N-glycosylation sites, enhancing substrate binding properties which may underlie the observed differences in catalytic efficiency between BxlBnon-glyc and BxlBN1;5. This study demonstrates the influence of N-glycosylation on A. nidulans BxlB production and function, reinforcing that protein glycoengineering is a promising tool for enhancing thermal stability, secretion, and enzymatic activity. Our report may also support biotechnological applications for N-glycosylation modification of other CAZymes FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO - FAPESP CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO - CNPQ Fechado

Published
2019

45. Additional file 8: of Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Author

Vries, Ronald De, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Sotiris Amillis, Cristiane Uchima, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo, Fusheng Chen, Wanping Chen, Choi, Cindy, Clum, Alicia, Santos, Renato Dos, Damásio, André, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María, Henrissat, Bernard, Hildén, Kristiina, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio, MacCabe, Andrew, Mäkelä, Miia, Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos, Mulé, Giuseppina, Chew Ngan, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean, Overkamp, Karin, Park, Hee-Soo, Perrone, Giancarlo, Francois Piumi, Punt, Peter, Ram, Arthur, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Nadhira Salih, Samson, Rob, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio, Sun, Hui, Susca, Antonia, Todd, Richard, Tsang, Adrian, Unkles, Shiela, Wiele, Nathalie Van De, Rossen-Uffink, Diana Van, Oliveira, Juliana, Vesth, Tammi, Visser, Jaap, Jae-Hyuk Yu, Miaomiao Zhou, Andersen, Mikael, Archer, David, Baker, Scott, Benoit, Isabelle, Brakhage, Axel, Braus, Gerhard, Fischer, Reinhard, Frisvad, Jens, Goldman, Gustavo, Houbraken, Jos, Berl Oakley, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, VanKuyk, Patricia, Wortman, Jennifer, Dyer, Paul, and Grigoriev, Igor

Subjects
body regions, inorganic chemicals, nervous system, fungi
Abstract

Effect of SHAM and KCN on fungal growth and sporulation. (PDF 252 kb)

Published
2017
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46. Additional file 27: of Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Author

Vries, Ronald De, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Sotiris Amillis, Cristiane Uchima, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo, Fusheng Chen, Wanping Chen, Choi, Cindy, Clum, Alicia, Santos, Renato Dos, Damásio, André, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María, Henrissat, Bernard, Hildén, Kristiina, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio, MacCabe, Andrew, Mäkelä, Miia, Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos, Mulé, Giuseppina, Chew Ngan, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean, Overkamp, Karin, Park, Hee-Soo, Perrone, Giancarlo, Francois Piumi, Punt, Peter, Ram, Arthur, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Nadhira Salih, Samson, Rob, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio, Sun, Hui, Susca, Antonia, Todd, Richard, Tsang, Adrian, Unkles, Shiela, Wiele, Nathalie Van De, Rossen-Uffink, Diana Van, Oliveira, Juliana, Vesth, Tammi, Visser, Jaap, Jae-Hyuk Yu, Miaomiao Zhou, Andersen, Mikael, Archer, David, Baker, Scott, Benoit, Isabelle, Brakhage, Axel, Braus, Gerhard, Fischer, Reinhard, Frisvad, Jens, Goldman, Gustavo, Houbraken, Jos, Berl Oakley, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, VanKuyk, Patricia, Wortman, Jennifer, Dyer, Paul, and Grigoriev, Igor

Abstract

Maximum likelihood rooted phylogeny of the FCY-like transporters of the aspergilli and some penicillia. (PDF 324 kb)

Published
2017
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47. Additional file 7: of Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Author

Vries, Ronald De, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Sotiris Amillis, Cristiane Uchima, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo, Fusheng Chen, Wanping Chen, Choi, Cindy, Clum, Alicia, Santos, Renato Dos, Damásio, André, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María, Henrissat, Bernard, Hildén, Kristiina, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio, MacCabe, Andrew, Mäkelä, Miia, Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos, Mulé, Giuseppina, Chew Ngan, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean, Overkamp, Karin, Park, Hee-Soo, Perrone, Giancarlo, Francois Piumi, Punt, Peter, Ram, Arthur, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Nadhira Salih, Samson, Rob, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio, Sun, Hui, Susca, Antonia, Todd, Richard, Tsang, Adrian, Unkles, Shiela, Wiele, Nathalie Van De, Rossen-Uffink, Diana Van, Oliveira, Juliana, Vesth, Tammi, Visser, Jaap, Jae-Hyuk Yu, Miaomiao Zhou, Andersen, Mikael, Archer, David, Baker, Scott, Benoit, Isabelle, Brakhage, Axel, Braus, Gerhard, Fischer, Reinhard, Frisvad, Jens, Goldman, Gustavo, Houbraken, Jos, Berl Oakley, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, VanKuyk, Patricia, Wortman, Jennifer, Dyer, Paul, and Grigoriev, Igor

Abstract

Comparative growth profiling of the aspergilli and selected other fungi. (PDF 8.65 kb)

Published
2017
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48. Additional file 6: of Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Author

Vries, Ronald De, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Sotiris Amillis, Cristiane Uchima, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo, Fusheng Chen, Wanping Chen, Choi, Cindy, Clum, Alicia, Santos, Renato Dos, Damásio, André, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María, Henrissat, Bernard, Hildén, Kristiina, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio, MacCabe, Andrew, Mäkelä, Miia, Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos, Mulé, Giuseppina, Chew Ngan, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean, Overkamp, Karin, Park, Hee-Soo, Perrone, Giancarlo, Francois Piumi, Punt, Peter, Ram, Arthur, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Nadhira Salih, Samson, Rob, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio, Sun, Hui, Susca, Antonia, Todd, Richard, Tsang, Adrian, Unkles, Shiela, Wiele, Nathalie Van De, Rossen-Uffink, Diana Van, Oliveira, Juliana, Vesth, Tammi, Visser, Jaap, Jae-Hyuk Yu, Miaomiao Zhou, Andersen, Mikael, Archer, David, Baker, Scott, Benoit, Isabelle, Brakhage, Axel, Braus, Gerhard, Fischer, Reinhard, Frisvad, Jens, Goldman, Gustavo, Houbraken, Jos, Berl Oakley, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, VanKuyk, Patricia, Wortman, Jennifer, Dyer, Paul, and Grigoriev, Igor

Subjects
body regions, animal structures, nervous system, fungi
Abstract

Overview of number of putative orthologs/paralogs in the compared fungal species related to primary carbon metabolism. (PDF 237 kb)

Published
2017
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49. Additional file 5: of Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Author

Vries, Ronald De, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Sotiris Amillis, Cristiane Uchima, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo, Fusheng Chen, Wanping Chen, Choi, Cindy, Clum, Alicia, Santos, Renato Dos, Damásio, André, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María, Henrissat, Bernard, Hildén, Kristiina, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio, MacCabe, Andrew, Mäkelä, Miia, Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos, Mulé, Giuseppina, Chew Ngan, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean, Overkamp, Karin, Park, Hee-Soo, Perrone, Giancarlo, Francois Piumi, Punt, Peter, Ram, Arthur, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Nadhira Salih, Samson, Rob, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio, Sun, Hui, Susca, Antonia, Todd, Richard, Tsang, Adrian, Unkles, Shiela, Wiele, Nathalie Van De, Rossen-Uffink, Diana Van, Oliveira, Juliana, Vesth, Tammi, Visser, Jaap, Jae-Hyuk Yu, Miaomiao Zhou, Andersen, Mikael, Archer, David, Baker, Scott, Benoit, Isabelle, Brakhage, Axel, Braus, Gerhard, Fischer, Reinhard, Frisvad, Jens, Goldman, Gustavo, Houbraken, Jos, Berl Oakley, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, VanKuyk, Patricia, Wortman, Jennifer, Dyer, Paul, and Grigoriev, Igor

Subjects
body regions, nervous system, fungi, behavior and behavior mechanisms, reproductive and urinary physiology
Abstract

Expression of mating and pheromone-signalling pathway genes in representative asexual aspergilli. (PDF 488 kb)

Published
2017
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50. Additional file 15: of Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Author

Vries, Ronald De, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Sotiris Amillis, Cristiane Uchima, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo, Fusheng Chen, Wanping Chen, Choi, Cindy, Clum, Alicia, Santos, Renato Dos, Damásio, André, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María, Henrissat, Bernard, Hildén, Kristiina, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio, MacCabe, Andrew, Mäkelä, Miia, Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos, Mulé, Giuseppina, Chew Ngan, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean, Overkamp, Karin, Park, Hee-Soo, Perrone, Giancarlo, Francois Piumi, Punt, Peter, Ram, Arthur, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Nadhira Salih, Samson, Rob, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio, Sun, Hui, Susca, Antonia, Todd, Richard, Tsang, Adrian, Unkles, Shiela, Wiele, Nathalie Van De, Rossen-Uffink, Diana Van, Oliveira, Juliana, Vesth, Tammi, Visser, Jaap, Jae-Hyuk Yu, Miaomiao Zhou, Andersen, Mikael, Archer, David, Baker, Scott, Benoit, Isabelle, Brakhage, Axel, Braus, Gerhard, Fischer, Reinhard, Frisvad, Jens, Goldman, Gustavo, Houbraken, Jos, Berl Oakley, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, VanKuyk, Patricia, Wortman, Jennifer, Dyer, Paul, and Grigoriev, Igor

Abstract

Extended analysis of stress tolerance of the aspergilli. (PDF 706 kb)

Published
2017
Full Text
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