490 results on '"Dairy Forage Research Center"'
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2. An overview of the Consortium GLADSOILMAP supported by the LE STUDIUM Loire Valley Institute for advanced research studies (France): Joining efforts between sub national, national, continental and global scale digital soil mapping of soils, soil properties and soil functions
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Arrouays, Dominique, Richer-De-Forges, Anne C, Minasny, Budiman, Poggio, Laura, Libohova, Zamir, Leatitia Mulder, Vera, Roudier, Pierre, Martin, Manuel P, Lagacherie, Philippe, Martelet, Guillaume, Nehlig, Pierre, Bourennane, Hocine, Info&Sols (Info&Sols), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Soil Security Laboratory, Faculty of Agriculture and Environment, The University of Sydney, World Soil Information (ISRIC), Agricultural Research Service , US Department of Agriculture, Dairy Forage Research Center, Soil Geography and Landscape Group, Wageningen University and Research [Wageningen] (WUR), Manaaki Whenua – Landcare Research [Lincoln], Laboratoire d'étude des Interactions Sol - Agrosystème - Hydrosystème (UMR LISAH), Institut de Recherche pour le Développement (IRD)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Bureau de Recherches Géologiques et Minières (BRGM) (BRGM), LE STUDIUM - GladSoilMap Consortium, LE STUDIUM, and INRAE Info&Sols
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[SDU.STU]Sciences of the Universe [physics]/Earth Sciences - Abstract
International audience
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- 2023
3. Transcriptional Analysis of Flowering Time in Switchgrass
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Casler, Michael [Univ. of Wisconsin, Madison, WI (United States). Dept. of Agronomy and Great Lakes Bioenergy Research Center; US Dairy Forage Research Center, Madison, WI (United States)]
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- 2017
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4. Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
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Jianxiu Liu, Magnus Hertzberg, Zhiyong Chen, Christopher Lyndon Davey, Iris Lewandowski, Danny Awty-Carroll, Kankshita Swaminathan, Elaine Jensen, Salvatore Luciano Cosentino, Paul Robson, Lindsay V. Clark, Tsai Wen Hsu, Antoine Harfouche, Donal Murphy-Bokern, Catherine Bastien, Gancho T. Slavov, Jon P. McCalmont, Anneli Adler, Astley Hastings, Iain Donnison, Kai Uwe Schwarz, Vasile Botnari, Danilo Scordia, Gail Taylor, Chris Ashman, Do-Soon Kim, Junqin Zong, Gerald A. Tuskan, Lawrence B. Smart, Maryse Brancourt-Hulmel, Huw Jones, Oene Dolstra, Xiaoli Jin, Sebastian Bopper, Uffe Jørgensen, Andreas Kiesel, Chang Yeon Yu, Lin Huang, Timothy J. Tschaplinski, Michal Mos, W. J. Macalpine, Anatolii Sandu, Richard Flavell, Susan Dalton, Brian J. Stanton, Andres F. Torres, Joerg Greef, Michael D. Casler, Ronald S. Zalesny, Luisa M. Trindade, Steve J. Hanley, Giovanni Scalici, Ian Shield, Antonella Iurato, Bernard G. McMahon, John Clifton-Brown, Reza Shafiei, Toshihiko Yamada, Erik J. Sacks, Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Department for Innovation in Biological, Agro-Food and Forest Systems, Tuscia University, US Dairy Forage Research Center, USDA-ARS : Agricultural Research Service, Rothamsted Research, Chercheur indépendant, Cornell University [New York], SweTree Technol AB, Partenaires INRAE, Swedish University of Agricultural Sciences (SLU), Biologie intégrée pour la valorisation de la diversité des arbres et de la forêt (BioForA), Institut National de la Recherche Agronomique (INRA)-Office National des Forêts (ONF), University of Hohenheim, Academy of Sciences of Moldova (ASM), Agroressources et Impacts environnementaux (AgroImpact), Institut National de la Recherche Agronomique (INRA), Hunan Agricultural University, Department of Crop Sciences, University of Göttingen - Georg-August-Universität Göttingen, University of Illinois at Urbana Champaign (UIUC), University of Illinois at Urbana-Champaign [Urbana], University of Illinois System-University of Illinois System, Università degli Studi di Catania (UniCT), Plant Breeding, Wageningen University and Research [Wageningen] (WUR), Independent Artist, Julius Kühn-Institut (JKI), Institute of Biological and Environmental Science, University of Aberdeen, Endemic Species Research Institute, Zhejiang University, Department of Agroecology, Aarhus University [Aarhus], Centre for Circular Bioeconomy, Seoul National University [Seoul] (SNU), Chinese Academy of Sciences (CAS), University of Minnesota [Duluth], University of Minnesota System, Energene, The James Hutton Institute, GreenWood Resources, HudsonAlpha Institute for Biotechnology [Huntsville, AL], Biological Sciences (University of Sydney), The University of Sydney, Oak Ridge National Laboratory, Hokkaido University [Sapporo, Japan], Kangwon National University, Northern Research Station, Forest Research [Great Britain], Italian Ministry of Education, Brain Gain Program (Rientro dei cervelli), US Department of Energy [DE-AC05-00OR22725, DE-SC0006634, DE-SC0012379, DE-SC0018420], Department of Trade and Industry (UK) [B/W6/00599/00/00], Biotechnology and Biological Sciences Research Council [CSP1730/1, BB/N016149/1, N016149, LK0863, K01711X/1, 10963A01, G016216/1, E006833/1, G00580X/1, 000I0410], Department for Environment, Food and Rural Affairs [LK0863, NF0424, NF0426], National Institute of Food and Agriculture, US Department of Agriculture, H2020 Environment [GRACE-745012/Bio-Based Industries Joint Undertaking], European Project: 311929,EC:FP7:KBBE,FP7-KBBE-2012-6-singlestage,WATBIO(2012), Biotechnology and Biological Sciences Research Council (BBSRC)-Aberystwyth University, Università degli studi della Tuscia [Viterbo], Biotechnology and Biological Sciences Research Council (BBSRC), Institut National de la Recherche Agronomique (INRA)-Office national des forêts (ONF), Georg-August-University = Georg-August-Universität Göttingen, University of Illinois System, and Università degli studi di Catania = University of Catania (Unict)
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Germplasm ,Agricultural Biotechnology ,Biomass ,Populus spp ,010501 environmental sciences ,bioenergy ,01 natural sciences ,cbio ,Laboratorium voor Plantenveredeling ,lignocellulose ,Platform ,salix ,feedstocks ,M. sacchariflorus ,M. sinensis ,Miscanthus ,Panicum virgatum ,perennial biomass crop ,Salix spp ,TARGETED MUTAGENESIS ,Cultivar ,AGRONOMIC TRAITS ,Waste Management and Disposal ,2. Zero hunger ,Molecular breeding ,Vegetal Biology ,sélection génétique ,Forestry ,04 agricultural and veterinary sciences ,production de biomasse ,M.  ,M. sacchariflorus ,M. sinensis ,Renewable Energy, Sustainability and the Environment ,Agronomy and Crop Science ,sélection végétale ,Willow ,sacchariflorus ,PLANT-REGENERATION ,populus ,Biology ,Bioenergy ,avancée scientifique ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Renewable Energy ,POPULATION-STRUCTURE ,GENOME-WIDE ASSOCIATION ,AGROBACTERIUM-MEDIATED TRANSFORMATION ,0105 earth and related environmental sciences ,bioénergie ,amélioration génétique ,Sustainability and the Environment ,Environmental and Society ,matériel forestier de reproduction ,15. Life on land ,BIOENERGY CROP ,biology.organism_classification ,matière première végétale ,[SDE.ES]Environmental Sciences/Environmental and Society ,Plant Breeding ,Agronomy ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,SINENSIS ANDERSS ,sinensis ,Environnement et Société ,EPS ,Biologie végétale ,NATURAL-POPULATIONS ,GENETIC-TRANSFORMATION - Abstract
This is the accepted manuscript of the paper "Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar", published as final paper in "Global Change Biology Bioenergy Volume 11, Issue 1, 08 February 2019, Pages 118–151 https://doi.org/10.1111/gcbb.12566”. Genetic improvement through breeding is one of the key approaches to increasing biomass supply. This paper documents the breeding progress to date for four perennial biomass crops (PBCs) that have high output–input energy ratios: namelyPanicum virgatum(switchgrass), species of the generaMiscanthus(miscanthus),Salix(willow) andPopulus(poplar). For each crop, we report on the size of germplasm collections, the efforts to date to phenotype and genotype, the diversity available for breeding and on the scale of breeding work as indicated by number of attempted crosses. We also report on the development of faster and more precise breeding using molecular breeding techniques. Poplar is the model tree for genetic studies and is furthest ahead in terms of biological knowledge and genetic resources. Linkage maps, transgenesis and genome editing methods are now being used in commercially focused poplar breeding. These are in development in switchgrass, miscanthus and willow generating large genetic and phenotypic data sets requiring concomitant efforts in informatics to create summaries that can be accessed and used by practical breeders. Cultivars of switchgrass and miscanthus can be seed‐based synthetic populations, semihybrids or clones. Willow and poplar cultivars are commercially deployed as clones. At local and regional level, the most advanced cultivars in each crop are at technology readiness levels which could be scaled to planting rates of thousands of hectares per year in about 5years with existing commercial developers. Investment in further development of better cultivars is subject to current market failure and the long breeding cycles. We conclude that sustained public investment in breeding plays a key role in delivering future mass‐scale deployment of PBCs.
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- 2019
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5. Symposium review: Uncertainties in enteric methane inventories, measurement techniques, and prediction models
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Hristov, Alexander N., Kebreab, Ermias, Niu, Mutian, Oh, Joonpyo, Bannink, André, Bayat, Ali Reza, Boland, Tommy, Brito, André F., Casper, David, Crompton, Les A., Dijkstra, Jan, Eugène, Maguy, Garnsworthy, Philip C., Haque, Najmul, Hellwing, Anne L.F., Huhtanen, Pekka J., Kreuzer, Michael, Kuhla, Björn, Lund, Peter, Madsen, Jørgen, Martin, Cécile, McClelland, Shelby C., Moate, Peter J., Muetzel, Stefan, Muñoz, Camila, O'Kiely, Padraig, Peiren, Nico, Reynolds, Christopher K., Schwarm, Angela, Shingfield, Kevin J., Storlien, Tonje M., Weisbjerg, Martin R., Yáñez Ruiz, David R., Yu, Zhongtang, Department of Animal Science, Pennsylvania State University (Penn State), Penn State System-Penn State System, University of California, Wageningen Livestock Research, Wageningen University and Research [Wageningen] (WUR), Natural Resources Institute Finland (LUKE), University College Dublin (UCD), University of New Hampshire (UNH), Independent Researcher, Animal Nutrition Group, Unité Mixte de Recherche sur les Herbivores - UMR 1213 (UMRH), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, School of Biosciences [Cardiff], Cardiff University, University of Copenhagen = Københavns Universitet (KU), Aarhus University [Aarhus], Swedish University of Agricultural Sciences (SLU), ETH, Leibniz Institute for Farm Animal Biology (FBN), Victoria Agriculture, Partenaires INRAE, Agresearch Ltd, INIA Remehue, Research Foundation - Flanders [Brussel] (FWO), Dairy Forage Research Center, University of Reading (UOR), Aberystwyth University, Norwegian University of Life Sciences (NMBU), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Ohio State University, Joint Programming Initiative on Agriculture, Food Security and Climate Change (FACCE-JPI), and Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)
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0301 basic medicine ,Animal Nutrition ,[SDV]Life Sciences [q-bio] ,Robust statistics ,Sulfur Hexafluoride ,Environmental pollution ,[SHS]Humanities and Social Sciences ,03 medical and health sciences ,Genetics ,Range (statistics) ,Production (economics) ,Animals ,[INFO]Computer Science [cs] ,Emission inventory ,uncertainty ,enteric methane ,prediction model ,livestock ,0402 animal and dairy science ,Empirical modelling ,04 agricultural and veterinary sciences ,Ruminants ,Diervoeding ,040201 dairy & animal science ,Animal Feed ,Diet ,Data set ,030104 developmental biology ,13. Climate action ,WIAS ,Environmental science ,Animal Science and Zoology ,Cattle ,Biochemical engineering ,Environmental Pollution ,Methane ,Predictive modelling ,Food Science - Abstract
Ruminant production systems are important contributors to anthropogenic methane (CH4) emissions, but there are large uncertainties in national and global livestock CH4 inventories. Sources of uncertainty in enteric CH4 emissions include animal inventories, feed dry matter intake (DMI), ingredient and chemical composition of the diets, and CH4 emission factors. There is also significant uncertainty associated with enteric CH4 measurements. The most widely used techniques are respiration chambers, the sulfur hexafluoride (SF6) tracer technique, and the automated head-chamber system (GreenFeed; C-Lock Inc., Rapid City, SD). All 3 methods have been successfully used in a large number of experiments with dairy or beef cattle in various environmental conditions, although studies that compare techniques have reported inconsistent results. Although different types of models have been developed to predict enteric CH4 emissions, relatively simple empirical (statistical) models have been commonly used for inventory purposes because of their broad applicability and ease of use compared with more detailed empirical and process-based mechanistic models. However, extant empirical models used to predict enteric CH4 emissions suffer from narrow spatial focus, limited observations, and limitations of the statistical technique used. Therefore, prediction models must be developed from robust data sets that can only be generated through collaboration of scientists across the world. To achieve high prediction accuracy, these data sets should encompass a wide range of diets and production systems within regions and globally. Overall, enteric CH4 prediction models are based on various animal or feed characteristic inputs but are dominated by DMI in one form or another. As a result, accurate prediction of DMI is essential for accurate prediction of livestock CH4 emissions. Analysis of a large data set of individual dairy cattle data showed that simplified enteric CH4 prediction models based on DMI alone or DMI and limited feed- or animal-related inputs can predict average CH4 emission with a similar accuracy to more complex empirical models. These simplified models can be reliably used for emission inventory purposes.
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- 2018
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6. Management Techniques to Improve Silage Quality
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Muck, Rich, Dairy Science, VSFA Convention & VT Nutritional Management 'Cow College', and U.S. Dairy Forage Research Center
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This presentation, which was given on February 16th during the 71st Annual Convention : 2017 Virginia State Feed Association & Nutritional Management “Cow” College, describes management techniques to improve silage quality, specifically packing, sealing, feed out, and additives. This presentation was given during the 71st Annual Convention of the 2017 Virginia State Feed Association Nutritional Management “Cow” College. This convention was held at The Hotel Roanoke and Conference Center in Roanoke, VA from February 15-16, 2017.
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- 2017
7. Monolignol ferulate conjugates are naturally incorporated into plant lignins
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Bronwen G. Smith, John H. Grabber, Troy Runge, Matthew L. Peck, Heather C. A. Free, Laura E. Bartley, Kirankumar S. Mysore, Richard Sibout, John Ralph, Chengcheng Zhang, Steven D. Karlen, Fachuang Lu, Seonghee Lee, Kate E. Helmich, Dharshana Padmakshan, Philip J. Harris, John C. Sedbrook, Rebecca A. Smith, Department of Bio- chemistry, University of Wisconsin-Madison, Department of Energy Great Lakes Bioenergy Research Center, Michigan State University [East Lansing], Michigan State University System-Michigan State University System, Department of Microbiology and Plant Biology, University of Oklahoma (OU), School of Chemical Sciences, Dublin City University [Dublin] (DCU), School of Biological Sciences [Auckland], University of Auckland [Auckland], Department of Horticultural Science, IFAS (Institute of Food and Agricultural Sciences) Gulf Coast Research and Education Center, University of Florida [Gainesville] (UF), Department of Energy Great Lakes Bioenergy Research Center, School of Biological Sciences, Illinois State University, Institut Jean-Pierre Bourgin (IJPB), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Agricultural Research Service , US Department of Agriculture, Dairy Forage Research Center, Department of Biological Systems Engineering, Plant Biology Division, The Samuel Roberts Noble Foundation, School of Biological Sciences [Clayton], Monash University [Clayton], University of Wisconsin, University of Florida [Gainesville], Bartley, Laura E., and Ralph, John
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0106 biological sciences ,0301 basic medicine ,cell-walls ,BAHD transferase ,[SDV]Life Sciences [q-bio] ,lignin ,perspective ,macromolecular substances ,Plant Science ,01 natural sciences ,complex mixtures ,DFRC ,structural-characterization ,transferase pmt ,dfrc method ,rice ,lignification ,overexpression ,identification ,biosynthesis ,Cell wall ,03 medical and health sciences ,chemistry.chemical_compound ,Transferase ,Lignin ,monocot ,Grasses ,phylogenetic tree ,Research Articles ,transgenic ,Multidisciplinary ,Chemistry ,fungi ,technology, industry, and agriculture ,food and beverages ,SciAdv r-articles ,monolignol ,3. Good health ,030104 developmental biology ,Biochemistry ,Monolignol ,GC-MS ,010606 plant biology & botany ,Conjugate ,Research Article - Abstract
Plants have convergently evolved to use monolignol ferulate conjugates to produce lignins containing chemically labile backbone esters., Angiosperms represent most of the terrestrial plants and are the primary research focus for the conversion of biomass to liquid fuels and coproducts. Lignin limits our access to fibers and represents a large fraction of the chemical energy stored in plant cell walls. Recently, the incorporation of monolignol ferulates into lignin polymers was accomplished via the engineering of an exotic transferase into commercially relevant poplar. We report that various angiosperm species might have convergently evolved to natively produce lignins that incorporate monolignol ferulate conjugates. We show that this activity may be accomplished by a BAHD feruloyl–coenzyme A monolignol transferase, OsFMT1 (AT5), in rice and its orthologs in other monocots.
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- 2016
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8. Report of the breeding debate
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Jean-Louis Durand, Jean-Paul Sampoux, L. Wolters, Jonas Aper, P. Arts, Vincent Beguier, F. X. Schubiger, Dirk Reheul, Roland Kölliker, C. Grieder, An Ghesquiere, Marc Ghesquière, K. Gylstrom, P. Marum, T. Vleugels, Isabelle Litrico, H. Riday, Joost Baert, H. Amdahl, C. Scotti, Bernadette Julier, Luciano Pecetti, U. Feuerstein, Beat Boller, P. Annichiarico, Philippe Barre, Faculty of Bioscience Engineering, Department of Plant Production, Ghent University [Belgium] (UGENT), Plant Sciences Unit, Institute for Agricultural and Fisheries Research, Graminor, Centre de Recherche pour la Production de Fourrage et des Produits Laitiers (CRA-FLC), Barenbrug Holland, Unité de Recherche Pluridisciplinaire Prairies et Plantes Fourragères (P3F), Institut National de la Recherche Agronomique (INRA), Jouffray-Drillaud, Agroscope, Deutsche Saatveredelung Ag, U.S. Dairy Forage Research Center. Plant Genetic Resources, Genomics and Genetic Improvement, United States Department of Agriculture - Agricultural Research Service, DSV zaden Nederland BV, Universiteit Gent = Ghent University [Belgium] (UGENT), Research Institute for Agricultural, Fisheries and Food (ILVO), USDA-ARS : Agricultural Research Service, and European Association for Research on Plant Breeding (EUCARPIA). Wageningen, NLD.
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2. Zero hunger ,[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,Vision ,Reference Document ,analyse prospective ,forage plant ,breeding techniques ,feed grasses ,graminée fourragère ,Agricultural economics ,horizon 2035 ,culture fourragère ,breeding goals ,Sustainability ,plant breeding ,Environmental science ,Plant breeding ,forage and turf species ,Environmental planning ,Forage crop ,amélioration des plantes - Abstract
Based on a questionnaire with 11 questions, 5 breeding institutes and 4 breeding companies defined their 2035 horizon for grass and forage crops breeding. Visions and opinions differed a lot regarding targeted species, breeding goals, importance of plant physiology, breeding techniques, testing environments, the use of molecular tools and the influence of regulations and sustainability drivers. The report can be considered as a joint reference document for future debates.
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- 2015
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9. Identification of the Structure and Origin of Thioacidolysis Marker Compounds for Cinnamyl Alcohol Dehydrogenase Deficiency in Angiosperms
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Catherine Lapierre, Gilles Pilate, Fachuang Lu, John Ralph, Hoon Kim, Jean-Charles Leplé, Brigitte Pollet, US Dairy Forage Research Center, USDA-ARS : Agricultural Research Service, University of Wisconsin-Madison, Unité de recherche Amélioration, Génétique et Physiologie Forestières (AGPF), Institut National de la Recherche Agronomique (INRA), Chimie Biologique (UCB), Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G), Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin, South China University of Technology [Guangzhou] (SCUT), and INRA, Institut National Agronomique Paris-Grignon, Laboratoire de Chimie Biologique
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0106 biological sciences ,Magnetic Resonance Spectroscopy ,Sinapaldehyde ,[SDV]Life Sciences [q-bio] ,Cinnamyl-alcohol dehydrogenase ,LIGNIN BIOSYNTHESIS ,Down-Regulation ,Biology ,Lignin ,01 natural sciences ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,CINNAMYL ALCOOL DESHYDROGENASE ,Magnoliopsida ,03 medical and health sciences ,chemistry.chemical_compound ,Molecular marker ,CAD ,Indene ,Molecular Biology ,030304 developmental biology ,Aldehydes ,0303 health sciences ,fungi ,food and beverages ,Cell Biology ,Plants, Genetically Modified ,lignine ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Alcohol Oxidoreductases ,Models, Chemical ,chemistry ,BIOSYNTHESE DE LA LIGNINE ,ALDEHYDE HYDROXYCINNAMYL ,ALCOOL CINNAMYLIQUE DESHYDROGENASE ,lignification ,marqueur moléculaire ,010606 plant biology & botany - Abstract
International audience; Molecular marker compounds, derived from lignin by the thioacidolysis degradative method, for cinnamyl alcohol dehydrogenase (CAD) deficiency in angiosperms have been structurally identified as indene derivatives. They are shown to derive from hydroxycinnamyl aldehydes that have undergone 8-O-4-cross-coupling during lignification. As such, they are valuable markers for ascertaining plant responses to various levels of CAD down-regulation. Their derivation illustrates that hydroxycinnamyl aldehydes incorporate into angiosperm lignins by endwise coupling reactions in much the same way as normal monolignols do, suggesting that the hydroxycinnamyl aldehydes should be considered authentic lignin precursors.
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- 2002
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10. Comparison of IgE-binding epitopes on wheat gliadins for patients with food allergy and experimentally sensitized mice
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Bodinier, M., Denery, S., Pineau, F., Triballeau, S., Leroy, M., Tranquet, O., Adel-Patient, K., Moneret-Vautrin, D., Bakan, B., Didier MARION, Lelion, A., Mothes, T., Mameri, H., Kasarda, D., Unité de recherche sur les Biopolymères, Interactions Assemblages (BIA), Institut National de la Recherche Agronomique (INRA), Unité de Recherche Immuno-Allergie Alimentaire, Université Nancy 2, Institute for Laboratory Medicine, Otto Wagner Hospital Vienna, Agricultural Research Service , US Department of Agriculture, Dairy Forage Research Center, The European Academy of Allergy and Clinical Immunology (EAACI). Zurich, CHE., and ProdInra, Migration
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food allergy ,wheat allergic patients ,[SDV.MHEP] Life Sciences [q-bio]/Human health and pathology ,wheat ,food and beverages ,mouse model of allergy ,epitopes ,gliadins ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
International audience; Mice models of allergy to wheat proteins have been recently developed but have not been characterized for epitope pattern. In our laboratory, mice were sensitized with total gliadins and produced IgE antibodies that recognize the different gliadin classes :α,β,γ, *1,2 and *5. The relevance of this mouse model has to be evaluated regarding IgE-binding epitopes. The aim of the study is to compare B-cell epitopes in wheat allergic patients and sensitized mice in order to find out whether IgE antibodies elicited in mice are representative of human ones.
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- 2011
11. Sequencing around 5-hydroxyconiferyl alcohol-derived units in caffeic acid O-methyltransferase-deficient poplar lignins
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Kris Morreel, Jane M. Marita, Fachuang Lu, Lise Jouanin, Wout Boerjan, John Ralph, Catherine Lapierre, Department of Biochemistry and Department of Energy Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, United States Dairy Forage Research Center, USDA-ARS : Agricultural Research Service, Institut Jean-Pierre Bourgin (IJPB), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Department of Plant Biotechnology and Genetics, Universiteit Gent = Ghent University [Belgium] (UGENT), Department of Plant Systems Biology, Flanders Institute for Biotechnology, Agricultural Research Service, and Ghent University [Belgium] (UGENT)
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0106 biological sciences ,IMPACT ,Physiology ,transgenic poplars ,Alcohol ,Plant Science ,oligolignols ,01 natural sciences ,Lignin ,nmr ,chemistry.chemical_compound ,Cell Wall ,Génétique des plantes ,Caffeic acid ,Organic chemistry ,cleavage ,Research Articles ,0303 health sciences ,Molecular Structure ,plants ,food and beverages ,Monomer ,Populus ,trimers ,Sinapyl alcohol ,impact ,Monolignol ,dfrc method ,reveals ,DFRC METHOD ,TRIMERS ,Plants genetics ,Cleavage (embryo) ,[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics ,03 medical and health sciences ,TRANSGENIC POPLARS ,Phenols ,REVEALS ,Genetics ,PLANTS ,Derivatization ,030304 developmental biology ,CLEAVAGE ,fungi ,Biology and Life Sciences ,Methyltransferases ,OLIGOLIGNOLS ,NMR ,chemistry ,010606 plant biology & botany - Abstract
Caffeic acid O-methyltransferase (COMT) is a bifunctional enzyme that methylates the 5- and 3-hydroxyl positions on the aromatic ring of monolignol precursors, with a preference for 5-hydroxyconiferaldehyde, on the way to producing sinapyl alcohol. Lignins in COMT-deficient plants contain benzodioxane substructures due to the incorporation of 5-hydroxyconiferyl alcohol (5-OH-CA), as a monomer, into the lignin polymer. The derivatization followed by reductive cleavage method can be used to detect and determine benzodioxane structures because of their total survival under this degradation method. Moreover, partial sequencing information for 5-OH-CA incorporation into lignin can be derived from detection or isolation and structural analysis of the resulting benzodioxane products. Results from a modified derivatization followed by reductive cleavage analysis of COMT-deficient lignins provide evidence that 5-OH-CA cross couples (at its β-position) with syringyl and guaiacyl units (at their O-4-positions) in the growing lignin polymer and then either coniferyl or sinapyl alcohol, or another 5-hydroxyconiferyl monomer, adds to the resulting 5-hydroxyguaiacyl terminus, producing the benzodioxane. This new terminus may also become etherified by coupling with further monolignols, incorporating the 5-OH-CA integrally into the lignin structure.
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- 2010
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12. Identification of the structure and origin of a thioacidolysis marker compound for ferulic acid incorporation into angiosperm lignins (and an indicator for cinnamoyl CoA reductase deficiency)
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Ralph, John, Kim, Hoon, Lu, Fachuang, Grabber, John H, Leplé, Jean-Charles, Berrio-Sierra, Jimmy, Mir Derikvand, Mohammad, Jouanin, Lise, Boerjan, Wout, Lapierre, Catherine, US Dairy Forage Research Center, USDA-ARS : Agricultural Research Service, University of Wisconsin-Madison, Unité de recherche Amélioration, Génétique et Physiologie Forestières (AGPF), Institut National de la Recherche Agronomique (INRA), Chimie Biologique (UCB), Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G), Laboratoire de biologie cellulaire et moléculaire, Department of plant systems biology, Flanders Institute for Biotechnology, Department of Molecular Genetics, and Universiteit Gent = Ghent University [Belgium] (UGENT)
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LIGNIN MONOMER ,Coumaric Acids ,Molecular Structure ,RADICAL COUPLING ,MOLECULAR MARKER ,Guaiacol ,fungi ,food and beverages ,Sulfides ,Aldehyde Oxidoreductases ,Lignin ,NMR ,[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics ,Magnoliopsida ,DOWNREGULATION ,MUTANT ,TRANSGENIC ,Oxidation-Reduction ,Biomarkers - Abstract
International audience; A molecular marker compound, derived from lignin by the thioacidolysis degradative method, for structures produced when ferulic acid is incorporated into lignin in angiosperms (poplar, Arabidopsis, tobacco), has been structurally identified as 1,2,2-trithioethyl ethylguaiacol [1-(4-hydroxy-3-methoxyphenyl)-1,2,2-tris(ethylthio)ethane]. Its truncated side chain and distinctive oxidation state suggest that it derives from ferulic acid that has undergone bis-8-O-4 (cross) coupling during lignification, as validated by model studies. A diagnostic contour for such structures is found in two-dimensional 13C–1H correlated (HSQC) NMR spectra of lignins isolated from cinnamoyl CoA reductase (CCR)-deficient poplar. As low levels of the marker are also released from normal (i.e. non-transgenic) plants in which ferulic acid may be present during lignification, notably in grasses, the marker is only an indicator for CCR deficiency in general, but is a reliable marker in woody angiosperms such as poplar. Its derivation, together with evidence for 4-O-etherified ferulic acid, strongly implies that ferulic acid is incorporated into angiosperm lignins. Its endwise radical coupling reactions suggest that ferulic acid should be considered an authentic lignin precursor. Moreover, ferulic acid incorporation provides a new mechanism for producing branch points in the polymer. The findings sharply contradict those reported in a recent study on CCR-deficient Arabidopsis.
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- 2008
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13. Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure
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Gilles Pilate, Björn Sundberg, Eric Messens, Ines Fehrle, Riet De Rycke, Annette Naumann, Veronique Storme, Hoon Kim, Brigitte Pollet, Andrea Polle, Shawn D. Mansfield, Michel Petit-Conil, Joachim Kopka, Jean-Paul Joseleau, Alexander Erban, Catherine Lapierre, Kris Morreel, Kyu-Young Kang, John Ralph, Jean-Charles Leplé, Rebecca Dauwe, Andrée Lefebvre, Katia Ruel, Sara Andersson-Gunnerås, Jacqueline Grima-Pettenati, Wout Boerjan, Unité de recherche Amélioration, Génétique et Physiologie Forestières (UAGPF), Institut National de la Recherche Agronomique (INRA), Department of Plant Systems Biology, Flanders Institute for Biotechnology, Department of Molecular Genetics, Ghent University [Belgium] (UGENT), Institut Jean-Pierre Bourgin (IJPB), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Institut für Forstbotanik, Georg-August-University [Göttingen], Department of Wood Science, University of British Columbia (UBC), US Dairy Forage Research Center, Agricultural Research Service, Department of Horticulture, University of Wisconsin-Madison, Centre de Recherche sur les Macromolécules Végétales, Unité Propre de Recherche 5301, Centre National de la Recherche Scientifique (CNRS), Pôle de Biotechnologies Végétales, Unité Mixte de Recherche/Unité Propre de Service 5546, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), Max Planck Institute of Molecular Plant Physiology (MPI-MP), Max-Planck-Gesellschaft, Centre Technique du Papier (CTP), Department of Biological Systems Engineering, Unité de recherche Amélioration, Génétique et Physiologie Forestières (AGPF), Universiteit Gent = Ghent University [Belgium] (UGENT), and USDA-ARS : Agricultural Research Service
- Subjects
0106 biological sciences ,ALCOHOL-DEHYDROGENASE ,LIGNIN BIOSYNTHESIS ,ARABINOGALACTAN-PROTEIN ,ENZYME ACTIVITY ,Plant Science ,Reductase ,01 natural sciences ,Lignin ,Ferulic acid ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Spectroscopy, Fourier Transform Infrared ,CELL WALL ,CHROMATOGRAPHY-MASS SPECTROMETRY ,Research Articles ,Chromatography, High Pressure Liquid ,0303 health sciences ,CINNAMOYL-CoA REDUCTASE ,food and beverages ,Plants, Genetically Modified ,Aldehyde Oxidoreductases ,Immunohistochemistry ,Phenotype ,Populus ,Biochemistry ,Cinnamoyl-CoA reductase ,Monolignol ,Carbohydrates ,Down-Regulation ,PHENYLPROPANOID METABOLISM ,Biology ,Fluorescence ,CELL WALL STRUCTURE ,TRANSGENIC POPLAR ,Cell wall ,[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics ,03 medical and health sciences ,Phenols ,Xylem ,MONOLIGNOL BIOSYNTHESIS ,Hemicellulose ,TRANSCRIPTOMICS ,Cellulose ,030304 developmental biology ,COA-REDUCTASE ,O-METHYLTRANSFERASE ,cell wall ,down regulation genetics ,lignin metabolism ,Gene Expression Profiling ,fungi ,Biology and Life Sciences ,Cell Biology ,SERINE-CARBOXYPEPTIDASE ,chemistry ,Solubility ,ARABIDOPSIS-THALIANA ,BIOSYNTHESIS LIGNIN ,PEUPLIER ,010606 plant biology & botany - Abstract
Cinnamoyl-CoA reductase (CCR) catalyzes the penultimate step in monolignol biosynthesis. We show that downregulation of CCR in transgenic poplar (Populus tremula × Populus alba) was associated with up to 50% reduced lignin content and an orange-brown, often patchy, coloration of the outer xylem. Thioacidolysis, nuclear magnetic resonance (NMR), immunocytochemistry of lignin epitopes, and oligolignol profiling indicated that lignin was relatively more reduced in syringyl than in guaiacyl units. The cohesion of the walls was affected, particularly at sites that are generally richer in syringyl units in wild-type poplar. Ferulic acid was incorporated into the lignin via ether bonds, as evidenced independently by thioacidolysis and by NMR. A synthetic lignin incorporating ferulic acid had a red-brown coloration, suggesting that the xylem coloration was due to the presence of ferulic acid during lignification. Elevated ferulic acid levels were also observed in the form of esters. Transcript and metabolite profiling were used as comprehensive phenotyping tools to investigate how CCR downregulation impacted metabolism and the biosynthesis of other cell wall polymers. Both methods suggested reduced biosynthesis and increased breakdown or remodeling of noncellulosic cell wall polymers, which was further supported by Fourier transform infrared spectroscopy and wet chemistry analysis. The reduced levels of lignin and hemicellulose were associated with an increased proportion of cellulose. Furthermore, the transcript and metabolite profiling data pointed toward a stress response induced by the altered cell wall structure. Finally, chemical pulping of wood derived from 5-year-old, field-grown transgenic lines revealed improved pulping characteristics, but growth was affected in all transgenic lines tested.
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- 2007
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14. Meta analysis of romina digestive responses of cattle to dietary NDF
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Sauvant, Daniel, Mertens, D., ProdInra, Migration, Physiologie de la Nutrition et Alimentation (PNA), Institut National Agronomique Paris-Grignon (INA P-G)-Institut National de la Recherche Agronomique (INRA), Dairy Forage Research Center, and Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G)
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NDF ,[SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies ,RUMINAL DIGESTION ,RUMINAL pH ,[SDV.SA.SPA] Life Sciences [q-bio]/Agricultural sciences/Animal production studies ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2006
15. Signatures of cinnamyl alcohol dehydrogenase deficiency in poplar lignins
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John Ralph, Brigitte Pollet, Gilles Pilate, Isabelle Mila, Hoon Kim, Jean-Charles Leplé, Lise Jouanin, Catherine Lapierre, Chimie Biologique (UCB), Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G), Unité de recherche Amélioration, Génétique et Physiologie Forestières (AGPF), Institut National de la Recherche Agronomique (INRA), Laboratoire de biologie cellulaire et moléculaire, US Dairy Forage Research Center, USDA-ARS : Agricultural Research Service, and University of Wisconsin-Madison
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0106 biological sciences ,Sinapaldehyde ,Cinnamyl-alcohol dehydrogenase ,Chemistry, Organic ,Down-Regulation ,Alcohol oxidoreductase ,Plant Science ,Horticulture ,01 natural sciences ,Biochemistry ,Lignin ,Gas Chromatography-Mass Spectrometry ,ORGANISME TRANSGENIQUE ,03 medical and health sciences ,chemistry.chemical_compound ,Salicaceae ,Sodium Hydroxide ,CINNAMYL ALCOOL DEHYDROGENASE ,Indene ,Acrolein ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,Molecular Structure ,fungi ,food and beverages ,General Medicine ,biology.organism_classification ,Plants, Genetically Modified ,Wood ,[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy ,Alcohol Oxidoreductases ,Enzyme ,Phenotype ,Populus ,chemistry ,Solubility ,PEUPLIER ,010606 plant biology & botany - Abstract
International audience; A series of transgenic poplars down-regulated for cinnamyl alcohol dehydrogenase (CAD) was analyzed by thioacidolysis. Among the lignin-derived monomers, the indene compounds that were recently shown to originate from sinapaldehyde incorporated into lignins through 8–O–4-cross-coupling, were found to increase as a function of CAD deficiency level. While these syringyl markers were recovered in substantial amounts in the most severely depressed lines, the markers for coniferaldehyde incorporation were recovered in only low amounts. In conjunction with these additional sinapaldehyde units and relative to the control samples, lignins in CAD-deficient poplar lines had less conventional syringyl-units and β–O–4-bonds and more free phenolic groups. We found that almost half of the polymers in the most deficient lines could be solubilized in alkali and at room temperature. This unusual behavior suggests that lignins in CAD-deficient poplars occur as small, alkali-leachable lignin domains. That mainly sinapaldehyde incorporates into the lignins of CAD-deficient poplars suggests that the recently identified sinapyl alcohol dehydrogenase (SAD), which is structurally distinct from the CAD enzyme targeted herein, does not play any substantial role in constitutive lignification in poplar.
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- 2004
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16. Genetic and molecular basis of grass cell wall biosynthesis and degradability. II. Lessons from brown-midrib mutants
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Catherine Lapierre, Brigitte Chabbert, Valérie Méchin, Sabine Guillaumie, John H. Grabber, John Ralph, O. Argillier, Yves Barrière, Unité de recherche Génétique et Amélioration des Plantes Fourragères (UGAPF), Institut National de la Recherche Agronomique (INRA), Fractionnement des AgroRessources et Environnement (FARE), Université de Reims Champagne-Ardenne (URCA)-Institut National de la Recherche Agronomique (INRA), Chimie Biologique (UCB), Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G), US Dairy Forage Research Center, and USDA-ARS : Agricultural Research Service
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0106 biological sciences ,DOWN-REGULATION ,Coumaric Acids ,Silage ,CAFFEOYL COENZYME-A ,Mutant ,CONIFERYL ALDEHYDE ,Biology ,SYRINGYL LIGNIN BIOSYNTHESIS ,Lignin ,Zea mays ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,RYEGRASS LOLIUM-PERENNE ,Cell wall ,Ferulic acid ,03 medical and health sciences ,chemistry.chemical_compound ,DRY-MATTER DISAPPEARANCE ,Cell Wall ,CINNAMYL ALCOHOL-DEHYDROGENASE ,Botany ,Poaceae ,MONOLIGNOL BIOSYNTHESIS ,030304 developmental biology ,0303 health sciences ,General Immunology and Microbiology ,Genetic Variation ,food and beverages ,Methyltransferases ,General Medicine ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,chemistry ,Biochemistry ,Stalk ,Mutation ,ACID O-METHYLTRANSFERASE ,ARABIDOPSIS-THALIANA ,Pith ,General Agricultural and Biological Sciences ,010606 plant biology & botany - Abstract
International audience; The brown-midrib mutants of maize have a reddish-brown pigmentation of the leaf midrib and stalk pith, associated with lignified tissues. These mutants progressively became models for lignification genetics and biochemical studies in maize and grasses. Comparisons at silage maturity of bm1, bm2, bm3, bm4 plants highlighted their reduced lignin, but also illustrated the biochemical specificities of each mutant in p-coumarate, ferulate ester and etherified ferulate content, or syringyl/guaiacyl monomer ratio after thioacidolysis. Based on the current knowledge of the lignin pathway, and based on presently developed data and discussions, C3H and CCoAOMT activities are probably major hubs in controlling cell-wall lignification (and digestibility). It is also likely that ferulates arise via the CCoAOMT pathway.
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- 2004
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17. Comparison of the consequences on lignin content and structure of COMT and CAD downregulation in poplar and Arabidopsis thaliana
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Lise Jouanin, Thomas Goujon, Richard Sibout, Brigitte Pollet, Isabelle Mila, Jean-Charles LEPLE, Gilles Pilate, Michel Petit-Conil, John Ralph, Catherine Lapierre, Laboratoire de biologie cellulaire et moléculaire, Institut National de la Recherche Agronomique (INRA), Biologie des Semences (LBS), Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G), Chimie Biologique (UCB), Génomique et Biotechnologie des Fruits (GBF), Institut National de la Recherche Agronomique (INRA)-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Unité de recherche Amélioration, Génétique et Physiologie Forestières (AGPF), Centre Technique du Papier (CTP), US Dairy Forage Research Center, USDA-ARS : Agricultural Research Service, Christian Walter, Mike Carson, and ProdInra, Migration
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BIOCHIMIE ,STRUCTURE DE LA LIGNINE ,[SPI.GPROC] Engineering Sciences [physics]/Chemical and Process Engineering ,[SDV]Life Sciences [q-bio] ,fungi ,LIGNIN BIOSYNTHESIS ,food and beverages ,[SDV.IDA] Life Sciences [q-bio]/Food engineering ,complex mixtures ,[SDV] Life Sciences [q-bio] ,VOIE DE LA BIOSYNTHESE ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,PEUPLIER ,[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering ,LIGNIN STRUCTURE ,BIOSYNTHESIS PATHWAY - Abstract
International audience; Lignification, a major biological event in the plant kingdom, is still poorly understood due to the structural complexity and to the high variability of native lignins. Poplars underexpressing two enzymes of the monolignol biosynthetic pathway (caffeic acid/5 hydroxyferulic O-methyltransferase or cinnamyl alcohol dehydrogenase) or Arabidopsis thaliana knock-out T-DNA insertion mutants in the genes encoding these enzymes have been obtained and analysed for the quantity and quality of their lignins. COMT or CAD down-regulation induced in poplar, a woody plant, and in Arabidopsis, the annual crucifer model plant, show similar specific alterations in lignin structure due to the incorporation of unusual phenolics in the polymer. The specific structural traits of lignins, which account for higher (CAD deficiency) or lower (COMT deficiency) susceptibility to alkaline delignification processes have been delineated. Lignins of COMT depressed plants essentialy comprise guaiacyl (G) units together with substantial amounts of 5-hydroxyguaiacyl (5-OH-G) units. They display a markedly higher frequency of resistant interunit bonds including new structures (benzodioxanes) and a lower frequency of free phenolic lignin units. These changes make the lignin polymer less amenable ta alkaline delignification. Lignins of CAD deficient plants display a higher content of free phenolic groups, and incorporation of sinapaldehyde units, both associated with a greater solubility in dilute alkali at room temperature. The lignin characteristics of the CAD antisense poplars allow a reduction in the amount of alkali required for paper pulp making using the Kraft procedure.
- Published
- 2004
18. NMR Evidence for benzodioxane structures resulting from incorporation of 5-hydroxyconiferyl alcohol into lignins of 0-methyltransferase-deficient poplars
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Ralph, John, Lapierre, Catherine, Lu, Fachuang, Marita, Jane M., Pilate, Gilles, Van Doorsselaere, Jan, Boerjan, Wout, Jouanin, Lise, US Dairy Forage Research Center, USDA-ARS : Agricultural Research Service, University of Wisconsin-Madison, Chimie Biologique (UCB), Institut National de la Recherche Agronomique (INRA)-Institut National Agronomique Paris-Grignon (INA P-G), Unité de recherche Amélioration, Génétique et Physiologie Forestières (AGPF), Institut National de la Recherche Agronomique (INRA), Department of plant systems biology, Flanders Institute for Biotechnology, and Laboratoire de biologie cellulaire et moléculaire
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O-METHYLTRANSFERASE ,fungi ,technology, industry, and agriculture ,food and beverages ,PEUPLIER BLANC ,TRANSGENIC PLANT ,macromolecular substances ,complex mixtures ,NMR ,RMN ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,LIGNAN ,BENZODIOXANE ,LIGNIN - Abstract
International audience; Benzodioxane structures are produced in lignins of transgenic poplar plants deficient in COMT, an O-methyltransferase required to produce lignin syringyl units. They result from incorporation of 5-hydroxyconiferyl alcohol into the monomer supply and confirm that phenols other than the three traditional monolignols can be integrated into plant lignins.
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- 2001
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19. Les composantes de l'acidose ruminale et les effets acidogènes des rations
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Sauvant, Daniel, Meschy, François, Mertens, D., Physiologie de la Nutrition et Alimentation (PNA), Institut National Agronomique Paris-Grignon (INA P-G)-Institut National de la Recherche Agronomique (INRA), and Dairy Forage Research Center
- Subjects
[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,CAPACITE TAMPON ,EFFICACITE ALIMENTAIRE - Abstract
National audience; Ruminal acidosis is a major concern in modern nutrition of ruminant. Effectively, the increase of production potentials has been associated with a subsequent increase of the proportion of concentrate in the diets. Therefore the reticulo rumen of the high yielding ruminants has to digest increased quantities of fermentable organic matter. The following fermentation rate is sometimes dramatically increased, therefore ruminant pH decreases and this acidosis status lead to several zootechnical drawbacks: negative digestive interactions, decrease of the milk fat content, digestive and metabolic pathologies... An acidosis status of the rumen is the consequence of a reduction of salivary flow which recycles phosphate and bicarbonate buffers. The assessment of acidosis status is performed hom the pH measurement of the rumen fluid. It is generally believed that the mean pH must not be less than an approximative value of 6.25. Numerous experimentations allowed to demonstrate that various diet characteristics have an influence on the ruminal pH. Considering the threshold value of 6.25, it is possible to define the corresponding recommended values for the various diet items. A part of the allowances are expressed as minimal values. Thus it is recommended that the diets contain a minimum of 35 % of NDF (% diet Dry matter), 25 % of forage NDF, 2.5 mm of mean particle size in the diets or 40 % of the diet dry matter hom particles larger than 2 mm. Other recommandations are under the form of constraints of maximum. Thus the concentrate proportion in the diet must remain below to around 45 %/DM. For starch, the corresponding value is of 25 % dry matter and for ruminal degradable starch, it is of 20 % of DM. Moreover, it is recommended that the index of mastication of the diets must be maintained to values greater than 40 min /kg DM intake. Otherwise, it known that high levels of intake induce a shorter transit time and a lower pH. in the rumen. Thus the mean pH presents values below the threshold of 6.25 when the level of DM intake is higher than about 2.5 % of live weight. Endly when the animal has a rate of intake, more than 50 g/min, pH values become less than 6.25. in case of high risk of acidosis, it is recommended to provide mineral buffers at an approximative rate of I to 2 % of DM intake. In conclusion, it is very important to characterise precisely the diets which are offered to ruminants by taking into account safety parameters in addition to the classical parameters of the nutritive value. An example of empirical prediction of the pH hom such criteria is given.; L’état d’acidose ruminale latente constitue une des préoccupations majeures de la nutrition moderne des animaux ruminants. En effet, l’accroissement des potentiels de production a entraîné l’apport de rations plus concentrées en énergie. De ce fait, le rumen de ces animaux doit traiter des quantités accrues de matières organiques fermentescibles et les fermentations plus intenses consécutives entraînent un état d’acidose aux effets zootechniques défavorables : interactions digestives négatives, dégradation du taux butyreux du lait, pathologies digestives et métaboliques... L’état d’acidose est également atteint car la sécrétion salivaire qui recycle les tampons ruminaux est insuffisante par rapport aux acides organiques produits par les fermentations. L’état d’acidose est apprécié à travers la mesure du pH de la panse. On estime que le pH moyen au cours d’une journée ne doit pas être inférieur à une valeur approximative de 6,25. Les recherches ont permis de montrer que de nombreuses caractéristiques des rations présentaient une influence sur le pH ruminal. Si on se réfère à la valeur seuil moyenne minimale de 6,25, il est possible de définir des limites pour les différentes caractéristiques mesurées sur les rations. Certaines limites recommandées se présentent sous forme de minima ; ainsi on estime qu’il faut au minimum 35 % de NDF/MS, 25 % de NDF de fourrage/MS, 2,5 mm de taille moyenne des particules de la ration ou 40 % de la MS sous forme de particules de taille supérieure à 2 mm. On sait en outre que l’indice de mastication de la ration doit être supérieur à 40 min/kg MS ingérée. Il existe également des recommandations de seuil maximum à ne pas dépasser. Ainsi la proportion d’aliments concentrés doit rester inférieure à environ 45 %/MS, celle d’amidon à 25 %/MS et celle d’amidon dégradable dans le rumen à 20 %/MS. D’autre part, il est connu que les niveaux élevés d’ingestion vont de pair avec un transit plus rapide et un pH plus faible, ainsi le pH moyen passe en dessous du seuil de 6,25 lorsque la MS ingérée excède environ 2,5 % du poids vif. Enfin les rations peu mastiquées sont ingérées rapidement et sont, de ce fait, acidogènes. On estime ainsi que chez le bovin la vitesse moyenne d’ingestion doit être inférieure à 50 g/min pour que les fermentations ruminales soient normales. En cas de risque avéré d’acidose, il est recommandé d’apporter des substances tampons à la ration, à une dose de l’ordre de 1 à 2 % de la MS ingérée. En conclusion, il est important de chercher à mieux caractériser les rations et aliments offerts aux ruminants en prenant en compte des critères " sécuritaires " en plus des paramètres classiques de valeur nutritive. Un exemple de méthode de prévision du pH à partir de tels critères est présenté.
- Published
- 1999
20. Nonlinear models of 15 N partitioning kinetics in late-lactation dairy cows from individually labeled feed ingredients.
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Reed KF, Erickson M, Barros T, Danes MAC, Powell JM, Zanton GI, and Wattiaux MA
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- Animals, Cattle, Female, Kinetics, Silage, Feces chemistry, Nitrogen metabolism, Glycine max, Nitrogen Isotopes analysis, Zea mays chemistry, Animal Feed analysis, Milk chemistry, Diet veterinary, Lactation
- Abstract
Few studies have examined the N kinetics of individual feeds with stable isotope tracing. We hypothesized that N partitioning to milk and excreta pools as well as the rates of the processes that drive this partitioning would differ for alfalfa silage, corn silage, corn grain, and soybean meal. Feed ingredients were endogenously labeled with
15 N and included in 4 diets to create treatments with the same dietary composition and different labeled feed. Diets were fed to 12 late-lactation dairy cows for 4 d (96 h) and feces, urine, and milk collection proceeded during the 4 d of15 N enrichment and for 3 d (80 h) after cessation of label feeding. Nonlinear models of15 N enrichment and decay were fit to milk (MN), urine (UN), and fecal N (FN) in R with the nlme package, and feed-specific parameter estimates were compared. The estimated proportions of feed N that were excreted in feces supported our understanding that N from soybean meal and corn grain is more digestible than N from alfalfa and corn silage. Estimates for the N partitioning between milk and urine from the 2 concentrate feeds (soybean meal and corn grain) indicated that UN/MN ratios were less than or equal to 1:1, indicating either more or equal nitrogen partitioning to milk compared with urine. It is important to maintain factual accuracy in representing the results rather than implying a desired outcome unsupported by the data. In contrast, UN/MN ratios for forage feeds (corn and alfalfa silage) were >1:1, indicating more N partitioning to urine than milk. The modeled proportion of total FN that originated from feed N was 82.2%, which is in line with previous research using a similar15 N measurement timeframe. However, the proportion of urinary and MN originating from feed N was much lower (60.5% for urine, 57.9% for milk), suggesting that approximately 40% of urinary and MN directly originate from body N sources related to protein turnover., (The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)- Published
- 2024
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21. Effect of feeding mechanically processed alfalfa silage on production performance of mid-lactation dairy cows.
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Kennedy KM, Pintens DA, Kalscheur KF, Shinners KJ, Friede JC, and Digman MF
- Abstract
Improving the digestibility and utilization of feedstuffs through processing methods may result in improved production and efficiency of dairy cattle. Our objective was to determine the effect of an intensive mechanical processing technique applied to wilted alfalfa before ensiling on dairy cow performance when fed as part of a TMR. Thirty-six mid-lactation Holstein dairy cows (primiparous and multiparous) were fed diets of similar composition (28.5% alfalfa haylage, 31.2% corn silage and 40.3% concentrates) that differed by pre-ensiling processing technique of alfalfa silage over a 6-week experimental period in a randomized complete block design. Treatments were alfalfa either conventionally chopped (CON) or mechanically processed (MPR). Neither BW, change in BW, BCS nor change in BCS differed between diets. Apparent DM, NDF, ADF, and CP digestibility were greater in MPR compared with CON. The DMI was lesser in MPR compared with CON during wk 5. Furthermore, forage NDF intake was lesser in MPR compared with CON during wk 5. Milk yield did not differ between MPR and CON, but milk fat yield and content were higher in MPR compared with CON. Consequently, 4% FCM and ECM were 1.5 kg/d greater in MPR compared with CON. Gross feed efficiency (ECM/DMI) was greater in MPR compared with CON during wk 5 and 6. Our results suggest that feeding a mechanically processed alfalfa silage enhanced fiber digestibility and subsequently improved dairy cattle gross feed efficiency in mid-lactation dairy cattle by the end of the experimental period. Further research is needed to elucidate physiological responses and practicality of implementing this processing method in a typical production setting., (© 2025, The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)
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- 2024
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22. Rhizosphere microbial community structure in high-producing, low-input switchgrass families.
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Stonoha-Arther C, Panke-Buisse K, Duff AJ, Molodchenko A, and Casler MD
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- Biomass, RNA, Ribosomal, 16S genetics, Fertilizers, Panicum microbiology, Panicum genetics, Rhizosphere, Microbiota, Nitrogen metabolism, Soil Microbiology
- Abstract
Switchgrass (Panicum virgatum L.) is a native, low-input North American perennial crop primarily grown for bioenergy, livestock forage, and industrial fiber. To achieve no-input switchgrass production that meets biomass needs, several switchgrass genotypes have been identified that have a low or negative response to nitrogen fertilizer, i.e., the biomass accumulation with added nitrogen is less than or equal to that when grown without nitrogen. In order to improve the viability of low-input switchgrass production, a more detailed understanding of the biogeochemical mechanisms active in these select genotypes is needed. 16S and ITS amplicon sequencing and qPCR of key functional genes were applied to switchgrass rhizospheres to elucidate microbial community structure in high-producing, no-input switchgrass families. Rhizosphere microbial community structure differed strongly between sites, and nitrogen responsiveness., Competing Interests: The authors have declared that no competing interests exist., (Copyright: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.)
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- 2024
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23. An interactive R-based custom quantification program for semi-quantitative analysis of triacylglycerols in bovine milk.
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Byrdwell WC and Kalscheur KF
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- Animals, Cattle, Chromatography, Liquid methods, Calibration, Mass Spectrometry methods, Milk chemistry, Triglycerides analysis, Triglycerides chemistry, Software
- Abstract
The R programming language, RStudio, and open-source software solutions for analysis of liquid chromatography-mass spectrometry (LC-MS) data have been used with user-written R-based custom quantification programs (CQP) for semi-quantification of triacylglycerols (TAGs) in bovine milk lipid extracts. Using the peak-finding capabilities of the package "xcms" in RStudio, peaks were integrated, and retention times aligned, normalized, and then used for semi-quantitative analysis of a custom set of four extraction internal standards (EISs) and 29 TAG regioisomers using the choice of four analytical internal standards (AISs). Alternating stereospecific numbering (sn) 1,3 TAG regioisomers (standards 1, 3, and 5 of six calibration standards) and sn-1,2 TAG regioisomers (standards 2, 4, and 6 of six standards) were used to make a set of six calibration standards, which were used for quantification using a linear fit model, polynomial fit model, power fit model, level-bracketed linear fit, replicate-bracketed polynomial fit, replicate-bracketed power fit, and replicate- and level-bracketed linear fit and response factors. For example, the linear fit for EIS1 gave an unacceptable coefficient of determination (CoD), r
2 = 0.9616, whereas the polynomial fit gave r2 = 0.9908 and the power fit gave r2 = 0.9928, while the double-bracketed linear fit gave CoDs of r2 = 0.9960, 0.9848, and 0.9781 for the three brackets, yet gave the least % difference to known calibration concentrations. For unparalleled transparency, the CQP produced webpages that allowed every step in the data processing and quantification sequence to be verified and reproduced, and contained interactive figures. The data are publicly available using a digital object identifier (DOI). The R code can be downloaded and used with the downloadable data to reproduce the results, to modify the code and further customize the results, or to copy and paste and adapt the code to other quantification applications., (© 2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)- Published
- 2024
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24. Oral swabs as a proxy for direct ruminal microbiome sampling in Holstein dairy cows is correlated with sample color.
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Skarlupka JH, Cox MS, Steinberger AJ, Sbardellati DL, McClure JC, Bickhart DM, Scheftgen AJ, Zuniga-Chaves I, Wolfe LA, Paget E, Skadron C, Attipetty N, and Suen G
- Abstract
Using oral swabs to collect the remnants of stomach content regurgitation during rumination in dairy cows can replicate up to 70% of the ruminal bacterial community, offering potential for broad-scale population-based studies on the rumen microbiome. The swabs collected from dairy cows often vary widely with respect to sample quality, likely due to several factors such as time of sample collection and cow rumination behavior, which may limit the ability of a given swab to accurately represent the ruminal microbiome. One such factor is the color of the swab, which can vary significantly across different cows. Here, we hypothesize that darker-colored swabs contain more rumen contents, thereby better representing the ruminal bacterial community than lighter-colored swabs. To address this, we collected oral swabs from 402 dairy cows and rumen samples from 13 cannulated cows on a research farm in Wisconsin, United States and subjected them to 16S rRNA sequencing. In addition, given that little is known about the ability of oral swabs to recapitulate the ruminal fungal community, we also conducted ITS sequencing of these samples. To correlate swab color to the microbiota we developed and utilized a novel imaging approach to colorimetrically quantify each swab from a range of light to dark. We found that swabs with increasing darkness scores were significantly associated with increased bacterial alpha diversity ( p < 0.05). Lighter swabs exhibited greater variation in their community structure, with many identified amplicon sequence variants (ASVs) categorized as belonging to known bovine oral and environmental taxa. Our analysis of the fungal microbiome found that swabs with increasing darkness scores were associated with decreased alpha diversity ( p < 0.05) and were also significantly associated with the ruminal solids fungal community, but not with the ruminal liquid community. Our study refines the utility of oral swabs as a useful proxy for capturing the ruminal microbiome and demonstrates that swab color is an important factor to consider when using this approach for documenting both the bacterial and fungal communities., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Skarlupka, Cox, Steinberger, Sbardellati, McClure, Bickhart, Scheftgen, Zuniga-Chaves, Wolfe, Paget, Skadron, Attipetty and Suen.)
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- 2024
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25. Evaluation of protocols to determine urine output and urinary urea nitrogen excretion in dairy cows with and without dietary salt supplementation.
- Author
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Letelier P, Zanton GI, and Wattiaux MA
- Subjects
- Animals, Cattle urine, Female, Creatinine urine, Specific Gravity, Urea urine, Lactation, Dietary Supplements, Nitrogen urine, Diet veterinary
- Abstract
Urine output and urinary urea-N excretion (UUN
e ) excretion are critical measures to accurately evaluate N metabolism in lactating dairy cows and environmental concerns related to manure N. The objectives of this study were: (1) to compare estimates of UUNe , urine output, and related variables from 3 pre-established measurement protocols (bladder catheterization, external collection cup, and spot sampling) and from dietary salt supplementation, (2) to study temporal variation in UUNe , urine output, and related variables as affected by measurement protocol, and (3) to evaluate urine specific gravity as a predictor of urine output. Twelve multiparous Holstein cows were used in a split-plot, Latin square design. Cows were randomly assigned to a diet (main plot) containing either 0.7% or 1.6% NaCl (DM basis) and then assigned to a sequence of 3 protocols (subplot) in a balanced 3 × 3 Latin square with 14-d period. For each protocol, measurements were conducted every 4 h for 3 consecutive days. Urine output was determined gravimetrically for bladder catheterization and external collection cup or based on measured cow BW, measured urinary creatinine concentration, and the assumed creatinine excretion of 29 mg/kg BW per day for spot sampling. Urine specific gravity was measured by refractometry. When averaged over a 3-d measurement period and compared with bladder catheterization, spot sampling underestimated urine output (6.8 kg/d; 20%) and UUNe (26 g/d; 13%) but exhibited greater concentration of urinary urea-N (+58 mg/dL; 10%). There were no differences in any measurements determined via bladder catheterization or external cup device protocols, except for urine output that tended to be 3.7 kg/d lower for collection cup compared with bladder catheterization. The 2 gravimetric protocols yielded lower urinary creatinine concentration than spot sampling (64.7 vs. 88.1 mg/dL) and lower creatinine excretion (25.3 mg/kg BW per day) than the value of 29 mg/kg BW per day generally assumed in the spot sampling protocol. Salt supplementation tended to increase urine output (+5.2 kg/d) and decrease urinary urea-N concentration (-93 mg/dL), urinary creatinine concentration (-9.5 mg/dL), milk protein concentration (-0.19 percentage unit) and milk protein yield (-70 g/d). There was greater temporal variation of urine output when measured via the collection cup compared with bladder catheterization in the first 2 d but not the third day of sampling, suggesting that an extended period of adaptation might have improved data quality of the collection cup protocol. The R2 of the linear regression to predict urine output with urine specific gravity was 67%, 73%, and 32% for bladder catheterization, collection cup, and spot sampling, respectively. In this study, spot sampling underestimated both urine output and UUNe , but UUNe determination did not differ between external collection cup and bladder catheterization. However, our data suggested the need to investigate the adaptation protocol, required days of measurements and the conversion of urine mass to urine volume to improve accuracy and precision of urine collection protocols., (The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)- Published
- 2024
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26. Effects of Early Lactation Milking Frequency in an Automated Milking System on Cow Performance.
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Kammann EM, French EA, Jozik NS, Li W, and Pralle RS
- Abstract
Automated milking systems ( AMS ) are increasingly adopted for dairy cow production, promoting individualized cow management dependent on factors like lactation stage, age, and productivity. The study objective was to investigate the effects of early lactation milking frequency on cows milked via AMS. Multiparous Holstein cows blocked by parity and due date were randomly assigned to treatments (n = 8 per treatment): three ( 3X ) or six ( 6X ) milkings per day ( MPD ). The experimental phase ( EXP ) was defined as 4 to 29 days in milk ( DIM ). The AMS settings were programed so 3X cows were limited to three MPD while 6X cows were allowed six MPD. Afterwards was the carry over phase ( CO ) ranging from 30 to 90 DIM; all cows were allowed up to six MPD. Measurements by the AMS included bodyweight, milk yield ( MY ), and pellet intake. Weekly composite milk samples were analyzed for macronutrient composition and fatty acid ( FA ) profile. Coccygeal blood was sampled at 3, 8 ± 1, and 13 ± 1 DIM; concentrations of blood plasma analytes were quantified. Greater MPD was achieved for 6X cows versus 3X cows during EXP, but similar during the CO. Daily MY was non-separable during the EXP while 6X cows in their third or greater lactation group ( 3 + LG ) had greater MY than 3X cows of the same LG during the CO. Milk fat content and 4% fat-corrected MY were both greater for 6X, 3 + LG cows during the EXP compared to 3X, 3 + LG cows. Milk FA methyl esters ( FAME ) proportions were different between MPD groups, with 6X, 3 + LG cows having the lowest short, even-chain FA from de novo or post-absorptive origin. Differences in analytes indicated that 6X, 3 + LG cows experienced metabolic stress and incorporated greater FA from adipose tissue. Greater early lactation MPD in AMS may shift cow nutrient partitioning to support greater production in 3+ parity cows.
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- 2024
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27. Effects of grass species and harvest date on cell wall components and feed efficiency of dairy cows.
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Sousa D, Murphy M, Hatfield R, and Nadeau E
- Subjects
- Animals, Cattle physiology, Female, Phleum, Dairying methods, Lactation, Milk chemistry, Milk metabolism, Festuca, Poaceae, Animal Nutritional Physiological Phenomena, Digestion physiology, Cell Wall, Silage analysis, Animal Feed analysis, Diet veterinary
- Abstract
There is a balance between DM yield and feed value when choosing types of grasses on a farm depending on the acreages of farmland and types of ruminants to be fed. Therefore, optimisation of the harvest strategy for grass silage is important for profitable dairy farming. Tall fescue has high DM yield and can replace traditional grasses, such as timothy, in Northern Europe in a changing climate as it has been shown to be more drought tolerant. As differences in climate responses previously have been related to differences in cell wall structure between grass species and, consequently, in digestibility, it is highly relevant to compare these species at similar maturity stages and to investigate if a very early harvest date will diminish potential differences between the species. This study evaluated the effects of harvest date and forage species on the concentration of hydroxycinnamic acids in silages and its relationship to feed efficiency of dairy cows. Tall fescue and timothy were harvested at very early date on May 25 or at early date on May 31 in the spring growth cycle. Forty lactating dairy cows were used in a block design. Cows received 1 of 4 treatments: (1) tall fescue harvested at very early date, (2) timothy harvested at very early date, (3) tall fescue harvested at early date, and (4) timothy harvested at early date. Diets were formulated to have the same forage-to-concentrate ratio (49:51 on DM basis). Tall fescue silages showed greater concentrations of DM, ash, and CP than timothy silages. Grasses harvested at early date showed greater concentrations of NDF, ADL, and cell wall than grasses harvested at very early date. Tall fescue silages showed greater concentration of p-coumaric acid and lower in vitro organic matter digestibility (IVOMD) compared to timothy silages. Milk production and composition were not affected by treatments but cows fed tall fescue-based diets showed lower milk protein yield and greater milk urea nitrogen than when timothy-based diets were fed. Furthermore, cows receiving timothy-based diets showed greater feed efficiency compared to cows receiving tall fescue-based diets. Thus, the lower concentration of p-coumaric acid and the higher IVOMD was associated with greater feed efficiency of cows fed timothy-based diets compared to tall fescue-based diets., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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28. Microbial inoculum effects on the rumen epithelial transcriptome and rumen epimural metatranscriptome in calves.
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Fregulia P, Park T, Li W, Cersosimo LM, and Zanton GI
- Subjects
- Animals, Cattle, Epithelium metabolism, Epithelium microbiology, Male, Gastrointestinal Microbiome genetics, Bacteria classification, Bacteria genetics, Bacteria metabolism, Gene Expression Profiling methods, Rumen microbiology, Rumen metabolism, Transcriptome
- Abstract
Manipulation of the rumen microbial ecosystem in early life may affect ruminal fermentation and enhance the productive performance of dairy cows. The objective of this experiment was to evaluate the effects of dosing three different types of microbial inoculum on the rumen epithelium tissue (RE) transcriptome and the rumen epimural metatranscriptome (REM) in dairy calves. For this objective, 15 Holstein bull calves were enrolled in the study at birth and assigned to three different intraruminal inoculum treatments dosed orally once weekly from three to six weeks of age. The inoculum treatments were prepared from rumen contents collected from rumen fistulated lactating cows and were either autoclaved (control; ARF), processed by differential centrifugation to create the bacterial-enriched inoculum (BE), or through gravimetric separation to create the protozoal-enriched inoculum (PE). Calves were fed 2.5 L/d pasteurized waste milk 3x/d from 0 to 7 weeks of age and texturized starter until euthanasia at 9 weeks of age, when the RE tissues were collected for transcriptome and microbial metatranscriptome analyses, from four randomly selected calves from each treatment. The different types of inoculum altered the RE transcriptome and REM. Compared to ARF, 9 genes were upregulated in the RE of BE and 92 in PE, whereas between BE and PE there were 13 genes upregulated in BE and 114 in PE. Gene ontology analysis identified enriched GO terms in biological process category between PE and ARF, with no enrichment between BE and ARF. The RE functional signature showed different KEGG pathways related to BE and ARF, and no specific KEGG pathway for PE. We observed a lower alpha diversity index for RE microbiome in ARF (observed genera and Chao1 (p < 0.05)). Five microbial genera showed a significant correlation with the changes in host gene expression: Roseburia (25 genes), Entamoeba (two genes); Anaerosinus, Lachnospira, and Succiniclasticum were each related to one gene. sPLS-DA analysis showed that RE microbial communities differ among the treatments, although the taxonomic and functional microbial profiles show different distributions. Co-expression Differential Network Analysis indicated that both BE and PE had an impact on the abundance of KEGG modules related to acyl-CoA synthesis, type VI secretion, and methanogenesis, while PE had a significant impact on KEGGs related to ectoine biosynthesis and D-xylose transport. Our study indicated that artificial dosing with different microbial inocula in early life alters not only the RE transcriptome, but also affects the REM and its functions., (© 2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
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- 2024
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29. Effects of altering diet carbohydrate profile and physical form on zoo-housed giraffe Giraffa camelopardalis reticulata.
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Kearney CC, Ball RL, and Hall MB
- Subjects
- Animals, Female, Giraffes physiology, Animals, Zoo, Animal Feed analysis, Diet veterinary, Dietary Carbohydrates administration & dosage, Animal Nutritional Physiological Phenomena
- Abstract
Unlike wild giraffe that primarily consume low starch browse, the preference of zoo-housed giraffe for consuming supplemental feeds over forage could increase the risk of digestive disorders such as ruminal acidosis. Our objective was to evaluate the effects of modifying a supplemental feed's non-fibre carbohydrate profile and physical form on nutritional, behavioural, and blood measures of giraffe in a zoological setting. Six non-lactating, adult, female reticulated giraffes were used in a two-pen modified reversal study using two dietary treatments in seven 21-day periods with data collected on days 15-21. Dietary treatments were a control feed comprised of commercially available products used at the time as the giraffe feed (GF) and an unpelleted experimental feed (EF). On a dry matter basis, GF and EF, respectively, contained 17.0% and 17.4% crude protein, 14.2% and 1.5% starch, 14.9% and 21.3% ethanol-soluble carbohydrates, 22.9% and 26.0% acid detergent fibre (ADF) and 9.50% and 14.9% ND-soluble fibre (NDSF), with modulus of fineness values of 3.62 and 4.82. Supplemental feeds, alfalfa hay, salt, and water were available for ad libitum consumption. Significance was declared at p ≤ 0.05. Intakes of hay, supplemental feeds, and total feed did not differ by diet (p > 0.28), though intakes of starch (0.93 and 0.12 kg; p = 0.05) and ADF (1.83 and 2.23 kg; p = 0.04) differed between GF and EF respectively. Giraffe behaviour values (min/48 h) were greater with EF for total eating (p = 0.04); diets were not detected as different for engagement in oral stereotypes (GF = 433, EF = 318 min/48 h; p = 0.22). Blood glucose was higher on GF than EF (99.0 and 82.3 mg/dL; p = 0.03). The lower EF blood glucose value is more similar to ranges reported for domesticated ruminants. No differences were detected for changes in body weight or body condition score in the 21-day periods (p > 0.32). Modification of supplemental feed carbohydrate profile and physical form can influence behaviour and blood glucose values of zoo-housed giraffe., (© 2024 Wiley‐VCH GmbH. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.)
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- 2024
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30. Temperature and soil moisture manipulation yields evidence of drought-induced pollen limitation in bee-pollinated squash.
- Author
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Gambel J and Holway DA
- Abstract
Climate change alters environmental conditions in ways that directly and indirectly affect plants. Flowering plants, for example, modify reproductive allocation in response to heat and drought stress, and such changes can in turn affect pollinator visitation and, ultimately, plant reproduction. Although the individual effects of warming and drought on plant reproductive allocation are well known, these factors may interact to influence reproduction. Here, we conducted a fully crossed temperature by irrigation manipulation in squash ( Cucurbita pepo ) to test how temperature and soil moisture variation affect pollinator-mediated reproduction. To tease apart the direct and indirect effects of temperature and soil moisture, we compared hand-pollinated plants to bee-pollinated plants and restricted bee foraging (i.e., pollen transfer) to one experimental group per day. Temperature and soil-moisture limitation acted independently of one another: warming decreased flower size and increased pollen production, whereas the effects of soil-moisture limitation were uniformly inhibitory. While treatments did not change squash bee ( Xenoglossa spp.) behavior, floral visitation by the honey bee ( Apis mellifera ) increased with temperature in male flowers and decreased with soil moisture in female flowers. Pollen deposition by bees was independent of plant soil moisture, yet reducing soil moisture increased pollen limitation. This result stemmed at least in part from the effects of soil-moisture limitation on pollen viability; seed set declined with increasing deposition of fluorescent pigment (a proxy for pollen) from plants experiencing decreased soil moisture. These findings suggest that the transfer of lower-quality pollen from plants experiencing soil-moisture limitation led to drought-induced pollen limitation. Similar effects may occur in a wide variety of flowering plant species as climate warming and drought increasingly impact animal-pollinated systems., Competing Interests: The authors declare that they have no conflicts of interest., (© 2024 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
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- 2024
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31. Crude protein oscillation in diets adequate and deficient in metabolizable protein: Effects on nutrient digestibility, nitrogen balance, plasma amino acids, and greenhouse gas emissions.
- Author
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Erickson MG, Reinhardt LA, Svaren L, Sullivan ML, Zanton GI, and Wattiaux MA
- Subjects
- Animals, Cattle, Female, Greenhouse Gases, Animal Feed, Nutrients metabolism, Lactation, Nitrogen metabolism, Digestion, Diet veterinary, Dietary Proteins metabolism, Amino Acids metabolism, Amino Acids blood, Milk metabolism, Milk chemistry
- Abstract
Reducing dietary CP is a well-established means to improve N use efficiency. Yet, few studies have considered if transient restrictions in dietary CP could reduce the environmental footprint of late-lactation cows. We hypothesized that the effects of CP feeding pattern on digestibility and environmental outputs would be amplified at lower dietary CP. We tested CP levels below and near predicted requirements (low protein [LP], 13.8%; high protein [HP], 15.5%) offered in 2 feeding patterns: where diets alternated ±1.8 percentage units CP every 2 d (oscillating [OF]) or remained static. Our study used a 2 × 2 factorial design with 16 mid- to late-lactation Holsteins (mean = 128, SD = 12 DIM), divided into rumen-cannulated (n = 8) and noncannulated subsets (n = 8). For each 28-d experimental period, we recorded feed intake and milk production and took samples of orts (1×/d) and milk (2×/d) for 4 d. For the cannulated subset, we measured and sampled from the total mass of feces and urine production and collected plasma 2×/d across 4 d. For the noncannulated subset, we sampled carbon dioxide and methane emissions 3×/d for 4 d. For each subset, we fit linear mixed models with fixed effects for CP level, CP feeding pattern, the interaction of CP level and CP feeding pattern, period, and a random effect for cow. For plasma and urinary urea-N, we conducted time series analysis. Contrary to our hypothesis, we found no evidence that dietary CP level and CP feeding pattern interacted to influence N balance, nutrient digestibility, or gas emissions. Results showed HP resulted in similar milk N but increased manure N, reducing N use efficiency (milk true protein N/intake N) relative to LP. For OF, urea-N in urine and plasma peaked 46 to 52 h after the first higher-CP phase feeding. Nutrient digestibility and gas emissions were similar across treatments, except CO
2 production was greater for OF-HP. In summary, measured variables were minimally affected by dietary CP alternating ±1.8 percentage units every 48 h, even when average dietary CP was fed below predicted requirements (LP). Although our findings suggest that mid- to late-lactation cows are resilient to oscillation in dietary CP, oscillating CP neither reduced the environmental footprint by improving nutrient use efficiencies nor reduced the potential for direct and indirect greenhouse gas emissions., (The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)- Published
- 2024
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32. Pooled DNA sequencing in hairy vetch ( Vicia villosa Roth) reveals QTL for seed dormancy but not pod dehiscence.
- Author
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Tilhou N, Kissing Kucek L, Carr B, Douglas J, Englert J, Ali S, Raasch J, Bhamidimarri S, Mirsky S, Monteros MJ, Hayes R, and Riday H
- Abstract
Introduction: Hairy vetch ( Vicia villosa Roth ) is a promising legume cover crop, but its use is limited by high rates of pod dehiscence and seed dormancy., Methods: We used phenotypically contrasting pooled DNA samples (n=24 with 29-74 individuals per sample) from an ongoing cover crop breeding program across four environments (site-year combinations: Maryland 2020, Maryland 2022, Wisconsin 2021, Wisconsin 2022) to find genetic associations and genomic prediction accuracies for pod dehiscence and seed dormancy. We also combined pooled DNA sample genetic association results with the results of a prior genome-wide association study., Results and Discussion: Genomic prediction resulted in positive predictive abilities for both traits between environments and with an independent dataset (0.34-0.50), but reduced predictive ability for DNA pools with divergent seed dormancy in the Maryland environments (0.07-0.15). The pooled DNA samples found six significant (false discovery rate q-value<0.01) quantitative trait loci (QTL) for seed dormancy and four significant QTL for pod dehiscence. Unfortunately, the minor alleles of the pod dehiscence QTL increased the rate of pod dehiscence and are not useful for marker-assisted selection. When combined with a prior association study, sixteen seed dormancy QTL and zero pod dehiscence QTL were significant. Combining the association studies did not increase the detection of useful QTL., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Tilhou, Kissing Kucek, Carr, Douglas, Englert, Ali, Raasch, Bhamidimarri, Mirsky, Monteros, Hayes and Riday.)
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- 2024
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33. Systematic review and meta-analysis of dairy cow responses to rumen-protected methionine supplementation before and after calving.
- Author
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Zanton GI and Toledo MZ
- Abstract
Balancing dairy cow diets for AA is an effective strategy to reduce dietary CP concentration, maintain levels of productivity, and increase nitrogen use efficiency. Most studies evaluating supplemental rumen-protected Met (sRPMet) focus on cows in established lactation; however, there is an increasing body of evidence suggesting that initiating sRPMet feeding to transition dairy cows is beneficial to production, reproduction, and health. Therefore, the objective of this study was to evaluate the effects of feeding sRPMet before and after calving through meta-analysis on pre- and postpartum performance and selected metabolic parameter responses. A literature search was conducted for published papers reporting on the effects of feeding sRPMet starting before parturition and continuing through early lactation, resulting in 21 publications with 40 treatment comparisons. Studies provided sRPMet both before (average of 8.20 [±2.94 SD] g of metabolizable sRPMet/d, which began at 19.3 [±4.23 SD] d before calving) and after calving (10.53 [±3.30 SD] g of metabolizable sRPMet/d for an average of 85.9 [±38.36 SD] DIM). Prepartum DMI and pre- and postpartum BW and BCS were unaffected by sRPMet. In contrast, postpartum DMI, milk yield, milk fat and true protein yield, and milk fat and true protein concentration were increased by sRPMet. Most production responses to sRPMet declined as lactation progressed where the predicted response in milk fat and true protein yield was 118 and 92 g/d at 21 DIM, respectively. Postpartum circulating metabolites were unaffected by sRPMet; however, the sample sizes for these analyses were much lower than for production responses. This meta-analysis indicates that feeding sRPMet before and after calving results in increased productivity beyond that which would be expected by providing sRPMet in established lactation alone., (© 2024.)
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- 2024
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34. Investigating the impact of feed-induced, subacute ruminal acidosis on rumen epimural transcriptome and metatranscriptome in young calves at 8- and 17-week of age.
- Author
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Li W, Larsen A, and Fregulia P
- Abstract
Introduction: With the goal to maximize intake of high-fermentable diet needed to meet energy needs during weaning period, calves are at risk for ruminal acidosis. Using the calves from previously established model of feed-induced, ruminal acidosis in young calves, we aimed to investigate the changes in rumen epimural transcriptome and its microbial metatranscriptome at weaning (8-week) and post-weaning (17-week) in canulated (first occurred at 3 weeks of age) Holstein bull calves with feed-induced subacute ruminal acidosis., Methods: Eight bull calves were randomly assigned to acidosis-inducing diet (Treated, n = 4; pelleted, 42.7% starch, 15.1% neutral detergent fiber [NDF], and 57.8% nonfiber carbohydrates), while texturized starter was fed as a control (Control, n = 4; 35.3% starch, 25.3% NDF, and 48.1% nonfiber carbohydrates) starting at 1 week through 17 weeks. Calves fed acidosis-inducing diet showed significantly less ( p < 0.01) body weight over the course of the experiment, in addition to lower ruminal pH ( p < 0.01) compared to the control group. Rumen epithelial (RE) tissues were collected at both 8 weeks (via biopsy) and 17 weeks (via euthanasia) and followed for whole transcriptome RNA sequencing analysis. Differentially expressed genes (DEGs) analysis was done using cufflinks2 (fold-change ≥2 and p < 0.05) between treated and control groups at 8-week of age, and between 8- and 17-week for the treated group., Results: At 8-week of age, DEGs between treatment groups showed an enrichment of genes related to the response to lipopolysaccharide (LPS) ( p < 0.005). The impact of prolonged, feed-induced acidosis was reflected by the decreased expression ( p < 0.005) in genes involved in cell proliferation related pathways in the RE at 17-week of age in the treated group. Unique sets of discriminant microbial taxa were identified between 8-and 17-week calves in the treated group and the treatment groups at 8-week, indicating that active microbial community changes in the RE are an integral part of the ruminal acidosis development and progression., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Li, Larsen and Fregulia.)
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- 2024
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35. Soil greenhouse gas flux and nitrogen mineralization following manure application from tannin-fed dairy cows.
- Author
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Romanko CA, Gay JD, Powell JM, Wattiaux M, Barford C, Larson RA, and Ruark MD
- Subjects
- Female, Cattle, Animals, Manure, Tannins, Nitrogen, Ammonia analysis, Soil, Greenhouse Gases
- Abstract
Growing concerns about environmental impacts of dairy farms have driven producers to address greenhouse gas (GHG) emissions and nitrogen (N) losses from soil following land application of dairy manure. Tannin dietary additives have proved to be a successful intervention for mitigating GHG and ammonia (NH
3 ) emissions at the barn scale. However, it is unknown how land application of dairy manure from cows fed tannin diets affects crop-soil nitrogen dynamics and soil GHG flux. To test this, cows were fed diets at three levels of tannins (0.0%, 0.4%, and 1.8% of dry matter intake) and their manure was field applied at two N rates (240 and 360 kg N ha-1 ). Soil NH4 + -N, NO3 - -N, corn silage yield, and soil GHG flux were then measured over a full growing season. Soils amended with tannin manure had lower initial NH4 + emissions were observed between manure-amended treatments. These results demonstrate that while tannin addition to dairy cow feed does not offer short-term GHG or NH4 + -N + NO3 - -N) concentrations 19 days after application, compared to soils amended with no tannin manures. Despite lower early season N availability in tannin-fertilized plots, there were no differences in corn silage yield. No differences in soil GHG and NH3 emissions were observed between manure-amended treatments. These results demonstrate that while tannin addition to dairy cow feed does not offer short-term GHG or NH3 emissions reductions after field manure application, it can promote slower soil N mineralization that may reduce reactive N loss after initial application., (© 2023 The Authors. Journal of Environmental Quality published by Wiley Periodicals LLC on behalf of American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America.)- Published
- 2024
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36. Dose-Dependent Effects of Supplementing a Two-Strain Bacillus subtilis Probiotic on Growth Performance, Blood Parameters, Fecal Metabolites, and Microbiome in Nursery Pigs.
- Author
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Duddeck KA, Petersen TE, Adkins HJ, Smith AH, Hernandez S, Wenner SJ, Yao D, Chen C, Li W, Fregulia P, Larsen A, and Jang YD
- Abstract
This experiment was conducted to evaluate the effects of dietary supplementation level of a two-strain Bacillus subtilis probiotic on growth performance, blood parameters, fecal metabolites, and microbiome in nursery pigs. A total of 54 weaned piglets were allotted to three treatments in three replicate pens with six pigs/pen for a 28 d feeding trial. The treatments were as follows: control: no probiotic supplementation; Pro1x: B. subtilis supplementation at 1.875 × 10
5 CFU/g diet; and Pro10x: B. subtilis supplementation at 1.875 × 106 CFU/g diet. Body weight at d 14 postweaning ( p = 0.06) and average daily gain for d 0 to 14 postweaning ( p < 0.05) were greater in the Pro1x treatment than in the other treatments. Blood glucose levels were greater in both probiotic treatments than in the control treatment at d 14 postweaning ( p < 0.05). In the fecal short-chain fatty acid (SCFA) concentrations, the butyrate concentrations were greater in the Pro1x treatment than in the other treatments ( p < 0.05), and the acetate, propionate, and total SCFA concentrations were greater in the Pro1x treatment than in the Pro10x treatment ( p < 0.05). The beta diversity of fecal microbiome composition at d 14 postweaning based on Unweighted Unifrac analysis was dissimilar between the Pro1x and Pro10x treatments ( p < 0.05). In conclusion, dietary B. subtilis supplementation of two strains selected to reduce effects of pathogenic Escherichia coli to nursery diets at 1.875 × 105 CFU/g diet improved the growth rate in the early postweaning period, increased fecal SCFA concentrations and altered the fecal microbial community composition. A higher dose of B. subtilis did not improve the performance parameters over those of the control piglets.- Published
- 2023
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37. Dynamic lactation responses to dietary crude protein oscillation in diets adequate and deficient in metabolizable protein in Holstein cows.
- Author
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Erickson MG, Zanton GI, and Wattiaux MA
- Subjects
- Female, Cattle, Animals, Diet veterinary, Milk metabolism, Zea mays metabolism, Dietary Proteins metabolism, Urea metabolism, Rumen metabolism, Digestion, Animal Feed analysis, Lactation physiology
- Abstract
Limited research has examined the interaction between dietary crude protein (CP) level and CP feeding pattern. We tested CP level (low protein [LP], 13.8%; high protein [HP], 15.5% CP, dry matter [DM] basis) and CP feeding pattern (OF = oscillating, SF = static) using a 2 × 2 factorial in 16 mid- to late-lactation Holsteins (initially 128 ± 12 d in milk; mean ± SD). Cows ate total mixed rations formulated by exchanging soy hulls and ground corn with solvent soybean meal to keep constant ratios of neutral detergent fiber to starch (1.18:1), rumen-degradable protein to CP (0.61:1), and forage-to-concentrate (1.5:1) in DM. The OF treatments alternated diets every 48 h to vary CP above and below the mean CP level (OF-LP = 13.8% ± 1.8%; OF-HP = 15.5% ± 1.8% CP [DM basis]) whereas diets were constant in SF (SF-LP = 13.8%; SF-HP = 15.5% CP [DM basis]). In four 28-d periods, 8 rumen-cannulated and 8 noncannulated cows formed 2 Latin rectangles. On d 25 to 28 of each period, each cow's feed intake and milk production were recorded, and samples were taken of orts (1×/d) and milk (2×/d). We fit linear mixed models with fixed CP level, CP feeding pattern, and period effects, and a random intercept for cow, computing least squares means and standard errors. Neither CP level, CP feeding pattern, nor the interaction affected DM intake, feed efficiency, or production of milk, fat- and protein-corrected milk (FPCM), fat, true protein, or lactose. Milk urea-N (MUN) yield was lesser for LP. The LP and OF conditions decreased MUN concentration. The CP level tended to interact with CP feeding pattern so that milk protein concentration was greatest for OF-HP. The OF and LP conditions increased the ratio of true protein to MUN yield. Within OF, cosinor mixed models of selected variables showed that cows maintained production of FPCM across dietary changes, but MUN followed a wave-pattern at a 2-d delay relative to dietary changes. A tendency for lesser MUN with OF contradicted prior research and suggested potential differences in urea-N metabolism between OF and SF. Results showed that cows maintained production of economically-relevant components regardless of CP feeding pattern and CP level. Contrary to our hypothesis, the effects of 48-h oscillating CP were mostly consistent across CP levels, suggesting that productivity is resilient to patterned variation in dietary CP over time even when average CP supply is low (13.8% of DM) and despite 48 h restrictions at 12.2% CP., (© 2024, The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)
- Published
- 2023
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38. A reference assembly for the legume cover crop hairy vetch ( Vicia villosa ).
- Author
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Fuller T, Bickhart DM, Koch LM, Kucek LK, Ali S, Mangelson H, Monteros MJ, Hernandez T, Smith TPL, Riday H, and Sullivan ML
- Abstract
Vicia villosa is an incompletely domesticated annual legume of the Fabaceae family native to Europe and Western Asia. V. villosa is widely used as a cover crop and forage due to its ability to withstand harsh winters. Here, we generated a reference-quality genome assembly (Vvill1.0) from low error-rate long-sequence reads to improve the genetic-based trait selection of this species. Our Vvill1.0 assembly includes seven scaffolds corresponding to the seven estimated linkage groups and comprising approximately 68% of the total genome size of 2.03 Gbp. This assembly is expected to be a useful resource for genetically improving this emerging cover crop species and provide useful insights into legume genomics and plant genome evolution., Competing Interests: HM is an employee of Phase Genomics (Seattle, WA, USA). DMB is an employee of Hendrix-Genetics (Boxmeer, the Netherlands). MJM is an employee of Bayer Crop Science (Chesterfield, MO, USA). All other authors declare that they have no competing interests., (© The Author(s) 2023.)
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- 2023
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39. Genome-wide association mapping in hairy vetch ( Vicia villosa ) discovers a large effect locus controlling seed dormancy.
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Tilhou N, Kucek LK, Carr B, Marion A, Douglas J, Englert J, Ali S, Raasch J, Bhamidimarri S, Mirsky SB, Monteros MJ, Krogman S, Hayes R, Azevedo M, and Riday H
- Abstract
Hairy vetch ( Vicia villosa Roth), a winter-hardy annual legume, is a promising cover crop. To fully leverage its potential, seed production and field performance of V. villosa must be improved to facilitate producer adoption. Two classic domestication traits, seed dormancy (hard seed) and dehiscence (pod shatter), are selection targets in an ongoing breeding program. This study reports a genome-wide association study of 1,019 V. villosa individuals evaluated at two sites (Knox City, Texas and Corvallis, Oregon) for the proportion of dormant seed, visual pod dehiscence scores, and two dehiscence surrogate measures (force to dehiscence and pod spiraling score). Trait performance varied between sites, but reliability (related to heritability) across sites was strong (dormant seed proportion: 0.68; dehiscence score: 0.61; spiraling score: 0.42; force to dehiscence: 0.41). A major locus controlling seed dormancy was found ( q -value: 1.29 × 10
-5 ; chromosome 1: position: 63611165), which can be used by breeding programs to rapidly reduce dormancy in breeding populations. No significant dehiscence score QTL was found, primarily due to the high dehiscence rates in Corvallis, Oregon. Since Oregon is a potentially major V. villosa seed production region, further dehiscence resistance screening is necessary., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Tilhou, Kucek, Carr, Marion, Douglas, Englert, Ali, Raasch, Bhamidimarri, Mirsky, Monteros, Krogman, Hayes, Azevedo and Riday.)- Published
- 2023
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40. Liver microbial community and associated host transcriptome in calves with feed induced acidosis.
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Li W, Larsen A, Murphy B, and Fregulia P
- Abstract
Introduction: In the dairy industry, calves are typically fed diets rich in highly fermentable carbohydrates and low in fibrous feeds to maximize ruminal papillae and tissue development. Calves on such diets are vulnerable at developing ruminal acidosis. Prevalent in cattle, liver abscess (LA) is considered a sequela to ruminal acidosis. LAs can cause significant liver function condemnation and decreased growth and production. Currently, we know little about the liver microbiome in calves with feed-induced acidosis., Methods: Using our established model of ruminal acidosis, where young calves were fed an acidosis-inducing (AC) or -blunting (control) diet starting at birth until 17-week of age, we investigated microbial community changes in the liver resultant from ruminal acidosis. Eight calves were randomly assigned to each diet, with four animals per treatment. Rumen epithelium and liver tissues were collected at 17 weeks of age right after euthanasia. Total RNAs were extracted and followed by whole transcriptome sequencing. Microbial RNA reads were enriched bioinformatically and used for microbial taxonomy classification using Kraken2., Results: AC Calves showed significantly less weight gain over the course of the experiment, in addition to significantly lower ruminal pH, and rumen degradation comparison to the control group ( p < 0.05). In the liver, a total of 29 genera showed a significant ( p < 0.05) abundance change (> 2-fold) between the treatments at 17-week of age. Among these, Fibrobacter, Treponema, Lactobacillus, and Olsenella have been reported in abscessed liver in cattle. Concurrent abundance changes in 9 of the genera were observed in both the liver and rumen tissues collected at 17-week of age, indicating potential crosstalk between the liver and rumen epithelial microbial communities. Significant association was identified between host liver gene and its embedded microbial taxa. Aside from identifying previously reported microbial taxa in cattle abscessed liver, new repertoire of actively transcribed microbial taxa was identified in this study., Discussion: By employing metatranscriptome sequencing, our study painted a picture of liver microbiome in young calves with or without feed induced acidosis. Our study suggested that liver microbiome may have a critical impact on host liver physiology. Novel findings of this study emphasize the need for further in-depth analysis to uncover the functional roles of liver resident microbiome in liver metabolic acidosis resultant from feed-related ruminal acidosis., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Li, Larsen, Murphy and Fregulia.)
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- 2023
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41. Community intervention trial for estimating risk of acute gastrointestinal illness from groundwater-supplied non-disinfected drinking water.
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Borchardt MA, Kieke BA Jr, Spencer SK, Lambertini E, Burch TR, and Loge FJ
- Subjects
- Adult, Child, Humans, Water Supply, Disinfection, Enterovirus B, Human, Drinking Water, Groundwater
- Abstract
By community intervention in 14 non-disinfecting municipal water systems, we quantified sporadic acute gastrointestinal illness (AGI) attributable to groundwater. Ultraviolet (UV) disinfection was installed on all supply wells of intervention communities. In control communities, residents continued to drink non-disinfected groundwater. Intervention and control communities switched treatments by moving UV disinfection units at the study midpoint (crossover design). Study participants (n = 1,659) completed weekly health diaries during four 12-week surveillance periods. Water supply wells were analyzed monthly for enteric pathogenic viruses. Using the crossover design, groundwater-borne AGI was not observed. However, virus types and quantity in supply wells changed through the study, suggesting that exposure was not constant. Alternatively, we compared AGI incidence between intervention and control communities within the same surveillance period. During Period 1, norovirus contaminated wells and AGI attributable risk from well water was 19% (95% CI, -4%, 36%) for children <5 years and 15% (95% CI, -9%, 33%) for adults. During Period 3, echovirus 11 contaminated wells and UV disinfection slightly reduced AGI in adults. Estimates of AGI attributable risks from drinking non-disinfected groundwater were highly variable, but appeared greatest during times when supply wells were contaminated with specific AGI-etiologic viruses.
- Published
- 2023
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42. Comparison of alternative neutral detergent fiber methods to the AOAC definitive method.
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Hall MB and Mertens DR
- Subjects
- Animals, Cattle, Female, Carbohydrates, Silage analysis, Amylases, Zea mays, Rumen, Digestion, Animal Feed analysis, Diet veterinary, Lactation, Dietary Fiber, Detergents
- Abstract
Neutral detergent fiber (NDF) is the most commonly reported metric for fiber in dairy cattle nutrition. An empirical method, NDF is defined by the procedure used to measure it. The current definitive method for NDF treated with amylase (aNDF) is AOAC Official Method 2002.04 performed on dried samples ground through the 1-mm screen of a cutting mill with refluxing and then filtration through Gooch crucibles without (AOAC-; reference method) or with (AOAC+) a glass fiber filter filtration aid. Other methods in use include grinding materials through the 1-mm screen of an abrasion mill, using filtration through a Buchner funnel with a glass fiber filter (Buch), and use of the ANKOM system (ANKOM Technology, Macedon, NY) that simultaneously extracts and filters samples through filter bags with larger (F57) or smaller (F58) particle size retentions. Our objective was to compare the AOAC and alternative methods using samples ground through the 1-mm screens of cutting or abrasion mills. Materials analyzed were 2 alfalfa silages, 2 corn silages, dry ground and high-moisture corn grains, mixed grass hay, ryegrass silage, soybean hulls, calf starter, and sugar beet pulp. Samples were run in duplicate in replicate analytical runs performed on different days by experienced technicians. Compared with cutting mill-ground samples, the aNDF% of dry matter results from abrasion mill-ground samples were or tended to be lower for 8 of 11 samples. Method affected aNDF% results for all materials, with method × grind interactions for 6 of 11 samples. For ash-free aNDF% assessed with cutting mill-ground materials, a priori selected contrasts showed that the number of materials for which methods differed or tended to differ from the AOAC methods were 4 (Buch), 8 (F57), and 3 (F58); and 3 for AOAC- versus AOAC+. However, statistically different does not necessarily mean substantially different. For a given feed and grind, a positive value for the absolute difference between the AOAC- mean and an alternative method mean minus 2 times the standard deviation of AOAC- suggests that values for the alternative method fall outside of the range of results likely to be observed for the reference method. The number of observed positive values for materials processed with cutting and abrasion mills, respectively, were 0 and 2 (AOAC+); 2 and 2 (Buch); 8 and 10 (F57); 4 and 7 (F58); and 0 and 4 (AOAC-). With the materials tested, methods in order of agreement with the reference method were Buch, F58, and F57, which often gave lower values. The AOAC+ gave results similar to AOAC-, substantiating it as an allowed modification of AOAC-. Best agreement between the reference method and variant NDF methods was achieved with the 1-mm screen cutting mill grind. The 1-mm abrasion mill grind produced more aNDF% results that were lower than the reference method but with fewer differences when filter particle retention size was smaller. The use of filters that retain finer particles could be explored to improve comparability of variant NDF methods and grinds. Further evaluation with an expanded set of materials is warranted., (© 2023, The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)
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- 2023
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43. 1 H- 13 C HSQC-NMR Analysis of Cranberry (Vaccinium Macrocarpon) Juice Defines the Chemical Composition of Juice Precipitate.
- Author
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Dorris MR, Zeller WE, and Bolling BW
- Subjects
- Plant Extracts analysis, Fruit chemistry, Carbohydrates analysis, Vaccinium macrocarpon chemistry
- Abstract
Shelf-stable cranberry juice precipitate has not been well characterized. Here, we describe using
1 H-13 C heteronuclear single quantum coherence-nuclear magnetic resonance (HSQC-NMR) spectroscopy for cranberry juice analysis, focusing on proanthocyanidins and the precipitate. HSQC-NMR cross-peaks from juices were categorized as aliphatic, olefinic, aromatic, carbohydrate backbone, or anomeric signals. An average cranberry juice precipitate had significantly more aromatic and significantly less carbohydrate backbone signals than an average supernatant. The precipitate was a collection of biomolecules held together by a mix of weak and strong intermolecular forces. Proanthocyanidin signals from precipitates of juices showed 22 ± 2 to 29.9 ± 0.7% A-type interflavan linkages and 34 ± 2 to 48 ± 3% of flavan-3-ol units with trans stereochemistry between the C2 and C3 positions. Based on this work,1 H-13 C HSQC-NMR is useful to analyze cranberry juice and reveals the complex chemical nature of components in the soluble and insoluble phases.- Published
- 2023
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44. The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species.
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Smith TPL, Bickhart DM, Boichard D, Chamberlain AJ, Djikeng A, Jiang Y, Low WY, Pausch H, Demyda-Peyrás S, Prendergast J, Schnabel RD, and Rosen BD
- Subjects
- Cattle genetics, Animals, Genome, Polymorphism, Single Nucleotide, Genomics
- Abstract
The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies and a community-agreed pangenome representation to replace breed-specific reference assemblies for cattle genomics. The BPC invites partners sharing our vision to participate in the production of these assemblies and the development of a common, community-approved, pangenome reference as a public resource for the research community ( https://bovinepangenome.github.io/ ). This community-driven resource will provide the context for comparison between studies and the future foundation for cattle genomic selection., (© 2023. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
- Published
- 2023
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45. Associations among Milk Microbiota, Milk Fatty Acids, Milk Glycans, and Inflammation from Lactating Holstein Cows.
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Coates LC, Durham SD, Storms DH, Magnuson AD, Van Hekken DL, Plumier BM, Finley JW, Fukagawa NK, Tomasula PM, Lemay DG, Picklo MJ, Barile D, Kalscheur KF, and Kable ME
- Subjects
- Animals, Female, Humans, Cattle, Lactation, Fatty Acids, Lactose, Inflammation, Corynebacterium, Milk microbiology, Microbiota
- Abstract
Milk oligosaccharides (MOs) can be prebiotic and antiadhesive, while fatty acids (MFAs) can be antimicrobial. Both have been associated with milk microbes or mammary gland inflammation in humans. Relationships between these milk components and milk microbes or inflammation have not been determined for cows and could help elucidate a novel approach for the dairy industry to promote desired milk microbial composition for improvement of milk quality and reduction of milk waste. We aimed to determine relationships among milk microbiota, MFAs, MOs, lactose, and somatic cell counts (SCC) from Holstein cows, using our previously published data. Raw milk samples were collected at three time points, ranging from early to late lactation. Data were analyzed using linear mixed-effects modeling and repeated-measures correlation. Unsaturated MFA and short-chain MFA had mostly negative relationships with potentially pathogenic genera, including Corynebacterium , Pseudomonas, and an unknown Enterobacteriaceae genus but numerous positive relationships with symbionts Bifidobacterium and Bacteroides . Conversely, many MOs were positively correlated with potentially pathogenic genera (e.g., Corynebacterium , Enterococcus , and Pseudomonas), and numerous MOs were negatively correlated with the symbiont Bifidobacterium . The neutral, nonfucosylated MO composed of eight hexoses had a positive relationship with SCC, while lactose had a negative relationship with SCC. One interpretation of these trends might be that in milk, MFAs disrupt primarily pathogenic bacterial cells, causing a relative increase in abundance of beneficial microbial taxa, while MOs respond to and act on pathogenic taxa primarily through antiadhesive methods. Further research is needed to confirm the potential mechanisms driving these correlations. IMPORTANCE Bovine milk can harbor microbes that cause mastitis, milk spoilage, and foodborne illness. Fatty acids found in milk can be antimicrobial and milk oligosaccharides can have antiadhesive, prebiotic, and immune-modulatory effects. Relationships among milk microbes, fatty acids, oligosaccharides, and inflammation have been reported for humans. To our knowledge, associations among the milk microbial composition, fatty acids, oligosaccharides, and lactose have not been reported for healthy lactating cows. Identifying these potential relationships in bovine milk will inform future efforts to characterize direct and indirect interactions of the milk components with the milk microbiota. Since many milk components are associated with herd management practices, determining if these milk components impact milk microbes may provide valuable information for dairy cow management and breeding practices aimed at minimizing harmful and spoilage-causing microbes in raw milk., Competing Interests: The authors declare no conflict of interest.
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- 2023
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46. Methane emission, nutrient digestibility, and rumen microbiota in Holstein heifers fed 14 different grass or clover silages as the sole feed.
- Author
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Parnian-Khajehdizaj F, Noel SJ, Johansen M, Weisbjerg MR, Hellwing ALF, Højberg O, Hall MB, and Lund P
- Subjects
- Pregnancy, Cattle, Animals, Female, Poaceae metabolism, Silage analysis, Rumen metabolism, Medicago, Diet veterinary, Nutrients analysis, Digestion, Methane metabolism, Lactation, Trifolium metabolism, Lolium, Festuca
- Abstract
This experiment investigated the variation in enteric methane production and associated gas exchange parameters, nutrient digestibility, rumen fermentation, and rumen microbiome when a range of silages based on different forage types (grass or clover), and different species within the 2 types, were fed as the sole feed to heifers. Three grass species (perennial ryegrass, festulolium, and tall fescue) and 2 clover species (red clover and white clover) were included. Perennial ryegrass was harvested at 2 maturity stages in the primary growth, white clover was harvested once in the primary growth, and 4 cuts of festulolium and tall fescue and 3 cuts of red clover were harvested during the growing season, giving 14 different silage batches in total. Sixteen Holstein heifers 16 to 21 mo old and 2 to 5 mo in pregnancy were fed the silages ad libitum as the sole feed in an incomplete crossover design. Each silage was fed to 4 heifers, except for the 2 perennial ryegrass silages, which were fed to 8 heifers; in total 64 observations. The CH
4 production was measured for 3 d in respiration chambers. Heifers fed clover silages had higher dry matter intake (DMI) compared with heifers fed grass silages, and heifers fed tall fescue silages had the numerically the lowest DMI. Compared with grass silages, feeding clover silages led to higher crude protein digestibility but lower neutral detergent fiber (NDF) digestibility. Rumen pH was higher in heifers fed clover silages compared with those fed grass silages. Based on composition analysis, the rumen microbiota of the heifers clustered clearly according to forage type and species. More specifically, 7 of the 34 dominating rumen bacterial genus-level groups showed higher relative abundances for the clover silages, whereas 7 genus-level groups showed higher abundances for the grass silages. Methane yield was higher for heifers fed grass silages than for those fed clover silages when methane production was related to dry matter and digestible organic matter intake, whereas the opposite was seen when related to NDF digestion. The gross energy lost as methane (CH4 conversion factor, %) reduced from 7.5% to 6.7%, equivalent to an 11% reduction. The present study gives the outlines for choosing the optimal forage type and forage species with respect to nutrient digestibility and enteric methane emission in ruminants., (The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)- Published
- 2023
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47. Transcript profiling of hairy vetch (Vicia villosa Roth) identified interesting genes for seed dormancy.
- Author
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Ali S, Kucek LK, Riday H, Krom N, Krogman S, Cooper K, Jacobs L, Mehta P, Trammell M, Bhamidimarri S, Butler T, Saha MC, and Monteros MJ
- Subjects
- Plant Dormancy genetics, Seasons, Plant Leaves genetics, Vicia, Fabaceae
- Abstract
Hairy vetch, a diploid annual legume species, has a robust growth habit, high biomass yield, and winter hardy characteristics. Seed hardness is a major constraint for growing hairy vetch commercially. Hard seeded cultivars are valuable as forages, whereas soft seeded and shatter resistant cultivars have advantages for their use as a cover crop. Transcript analysis of hairy vetch was performed to understand the genetic mechanisms associated with important hairy vetch traits. RNA was extracted from leaves, flowers, immature pods, seed coats, and cotyledons of contrasting soft and hard seeded "AU Merit" plants. A range of 31.22-79.18 Gb RNA sequence data per tissue sample were generated with estimated coverage of 1040-2639×. RNA sequence assembly and mapping of the contigs against the Medicago truncatula (V4.0) genome identified 76,422 gene transcripts. A total of 24,254 transcripts were constitutively expressed in hairy vetch tissues. Key genes, such as KNOX4 (a class II KNOTTED-like homeobox KNOXII gene), qHs1 (endo-1,4-β-glucanase), GmHs1-1 (calcineurin-like metallophosphoesterase), chitinase, shatterproof 1 and 2 (SHP1, SHP2), shatter resistant 1-5 (SHAT1-5)(NAC transcription factor), PDH1 (prephenate dehydrogenase 1), and pectin methylesterases with a potential role in seed hardness and pod shattering, were further explored based on genes involved in seed hardness from other species to query the hairy vetch transcriptome data. Identification of interesting candidate genes in hairy vetch can facilitate the development of improved cultivars with desirable seed characteristics for use as a forage and as a cover crop., (© 2023 The Authors. The Plant Genome published by Wiley Periodicals LLC on behalf of Crop Science Society of America.)
- Published
- 2023
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48. Effects of chemical additive and packing density on the fermentation profile and nutrient composition of ensiled cocktail forage mix.
- Author
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Souza MS, Pupo MR, Diepersloot EC, Akins MS, and Ferraretto LF
- Abstract
Recently, the use of cocktail forage mixes in dairy cattle rations has become more common because the mixtures are low-cost, fit well in rotation after a cereal grain forage, and can have similar yield and energy value compared with alfalfa silage. This experiment evaluated the effects of a chemical additive and packing density on the fermentation profile and nutrient composition of cocktail mix silage. The cocktail forage mix (brown-midrib sorghum-sudangrass, Italian ryegrass, red clover, berseem clover, and hairy vetch) was harvested, ensiled in laboratory silos (3.79-L plastic buckets), and allowed to ferment for 30 d. The experiment consisted of 6 treatments, 2 chemical additives [CON (30 mL of distilled water) or ADD (sodium sulfite, sodium metabisulfite, and fungal amylase)], and 3 packing densities [D100, D75, and D50 (100%, 75%, or 50% of the maximum material in laboratory silos, respectively)], for a total of 24 silos (4 replications per treatment combination). No interactions of additive by density were detected for any parameters evaluated. The addition of the chemical additive influenced fermentation profile, with reduced concentrations of total acids, lactic acid, acetic acid, and ethanol in ADD-treated silages. Moreover, D50 reduced concentrations of total acids, lactic acid, and acetic acid compared with D100, but had greater pH and yeast and mold counts. Minimal changes in nutrient composition were detected regardless of treatment. Overall, this study corroborates the importance of a well-packed silage during the ensiling process. Poorly packed cocktail mix silages may be more prone to spoilage based on yeast and mold counts., (© 2023.)
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- 2023
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49. Invited review: Corrected milk: Reconsideration of common equations and milk energy estimates.
- Author
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Hall MB
- Subjects
- Female, Animals, Lactose metabolism, Diet veterinary, Energy Metabolism, Proteins metabolism, Milk metabolism, Lactation metabolism
- Abstract
Corrected milk equations were developed in attempts to bring milk weights to a standardized basis for comparison by expressing the weight and composition of milk as corrected to the energy content of milk of a specific composition. Expressed as milk weights familiar on farm and in commerce, this approach integrates energy contributions of the dissimilar components to make the mass units more comparable. Such values are applied in evaluating feed efficiency, lactation performance, and global milk production, as functional units for lifecycle assessments, and in translation of research results. Corrected milk equations are derived from equations relating milk gross energy to milk composition. First, a milk energy equation is used to calculate the energy value of the milk composition to correct to (e.g., 0.695 Mcal/kg for milk with 3.5% fat, 3.05% true protein, and 4.85% lactose). That energy value is divided into the energy equation to give the corrected milk equation. Confusion has arisen, as different equations purport to correct to the same milk composition; their differences are based on uses of different energy equations or divisors. Accuracy of corrected milk equations depends on the accuracy of the energy equations used to create them. Energy equations have evolved over time as different milk component analyses have become more available. Inclusion of multiple milk components more accurately predicts milk energy content than does fat content alone. Omission of components from an equation requires the assumption that their content in milk is constant or highly correlated with an included component. Neither of these assumptions is true. Milk energy equations evaluated on a small data set of measured milk values have demonstrated that equations that incorporate protein, fat, and lactose contents multiplied by the gross energy of each component more closely predict milk energy than equations containing fewer components or regression-derived equations. This provides a tentative recommendation for using energy equations that include the 3 main milk components and their gross energy multipliers for predicting milk energy and deriving corrected milk equations. Accuracy of energy equations is affected by the accuracy of gross energy values of individual components and variability of milk composition. Lactose has consistent reported gross energy values. In contrast, gross energy of milk fat and protein vary as their compositional profiles change. Future refinements could assess accuracy of milk fat and protein gross energy and whether that appreciably improves milk energy predictions. Fat gross energy has potential to be calculated using the milk fatty acid profile, although the influence on gross energy may be small. For research, direct reporting of milk energy values, rather than corrected milk, provides the most explicit, least manipulated form of the data. However, provision of corrected milk values in addition to information on components can serve to translate the energy information to a form familiar to and widely used in the field. When reporting corrected milk data, the corrected milk equation, citation for the energy equation used, and composition and energy contents of the corrected milk must be described to make clear what the values represent., (The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)
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- 2023
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50. Variable humic product effects on maize structural biochemistry across annual weather patterns and soil types in two Iowa (U.S.A.) production fields.
- Author
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Olk DC, Dinnes DL, Hatfield RD, Scoresby JR, and Darlington JW
- Abstract
Agronomic benefits of humic product application to crops are receiving increasing attention, though underlying biochemical changes remain unexplored, especially in field settings. In this study, maize (Zea mays L.) concentrations of 11 phenol and five carbohydrate monomers were determined in whole plant stover (four growing seasons) and roots (two growing seasons) at physiological maturity for two rainfed fields in Iowa (USA) having humic product applications. Stover and root tissues tended toward greater phenol concentrations in a drier upland transect but greater carbohydrate concentrations in a wetter lowland transect. Two humic treatments further accentuated these trends in upland roots. Their phenol content increased significantly with humic application in the droughtier season of root sampling (2013). Phenol increases above the unamended control averaged 20% for each monomer. Total phenols increased above the control by 12% and 19% for the two humic treatments. Five carbohydrate monomers in the upland roots did not respond to humic application. In the second year of root sampling (2014), which had abundant rainfall, upland root phenols did not respond substantively to humic application, but root carbohydrates increased on average by 11 or 20% for the two humic treatments compared to the control, reaching significance (P< 0.10) in 7 of 10 cases. Upland stover phenol concentrations responded differently to humic product application in each of four years, ranging from numeric increases in the droughtiest year (2012) to significant decreases with abundant rainfall (2014). In the lowland transect, root phenols and carbohydrates and stover phenols responded inconsistently to humic application in four years. Stover carbohydrates did not respond consistently to humic application in either transect. The phenols that were more responsive to humic application or to droughtier conditions included p-coumaric acid and syringaldehyde, which are heavily involved in late-season maize lignification. In summary, humic product application further promoted root lignification, a natural response to drought. Yet under non-drought conditions it promoted root carbohydrate production. Carbohydrate production might be the intrinsic plant response to humic product application in stress-free conditions. These results indicate complex interactions in field conditions between plant biochemistry, environmental signals, and the humic product., Competing Interests: JS and JD were employed by the company Minerals Technologies, Inc. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors declare that this study received funding from both USDA-ARS and Mineral Technologies, Inc. through USDA-ARS Trust Fund Cooperative Agreement Nr. 58-3625-2-573. Mineral Technologies, Inc. agreed to the publication of this manuscript but was not involved in sample collection, analysis, interpretation of data, the writing of this article, or the decision to submit it for publication., (Copyright © 2023 Olk, Dinnes, Hatfield, Scoresby and Darlington.)
- Published
- 2023
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