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2. Listeria monocytogenes-associated spontaneous bacterial peritonitis in France: a nationwide observational study of 208 cases

Author

Abdou, Mohamed, Abdulhai, Ayman, Abdulhal, Ayman, Abel, Samy, Abergel, Armand, Aberrane, Saïd, Abraham, Bruno, Adler, Maxime, Agard, Christian, Agha-Mir, Ilhem, Aguilar, Claire, Agulles, Baptiste, Aldallal, Hamza, Alric, Laurent, Amiot, Xavier, Andrau, Pierre, Andrieux, Vladimir, Ansart, Séverine, Anty, Rodolphe, Archambeaud, Isabelle, Arem, Samir, Armand, Laurence, Aubailly, Lucie, Audibert, Juliette, Auguereau, Olivier, Auvray, Christelle, Aziz, Karime, Bachelier, Marie-Nadège, Bacquaert-Dufour, Karine, Badet, Françoise, Bahallah, Mohamed-Larbi, Balanant, Hélène, Baraduc, Régine, Bardis, Alexandre, Barraud, Olivier, Barrier, Jocelyn, Baudet, Antoine, Baumert, Thomas, Beaugerie, Laurent, Bébéar, Cécile, Becheur, Hakim, Bemer, Pascale, Benard, Caroline, Benezet, Marie-Pierre, Benmahammed, Mohammed, Bennouna, Jaafar, Benseddik, Zehaira, Bensimon, Pierre-Yves, Bental, Abdeslam, Berete, Aliou, Bergier, Jean-Michel, Berkani, Wacila, Bernardi, Franck, Bert, Frederic, Bertrou, Anne, Beuret, Pascal, Beurton-Chataigner, Isabelle, Beuscart, Claude, Beusnel, Christine, Bevilacqua, Sibylle, Beze, François, Bideau, Karine, Bidegain, Frédéric, Billon, Laura, Blaison, Gilles, Blanc, Michèle, Blanc, Pierre, Blanchi, Sophie, Blancho, Gilles, Bland, Stephane, Blondeau, Vincent, Boldron, Amale, Bon, Djemah, Bonacorsi, Stéphane, Bonzon, Lucas, Borderon, Anaïs, Botelho-Nevers, Elisabeth, Bottlaender, Jacques, Bouc-Boucher, Mathilde, Bouchaud, Olivier, Bougon, David, Boukelikha, Khaled, Bourlet, Thomas, Boussoukaya, Samy, Boutaleb, Hamza, Bouziges, Nicole, Bray, Philippe, Bréchet, Caroline, Bret, Laurent, Brieu, Nathalie, Briffaut, David, Brochet, Christine, Brulez-Des-Varannes, Stanislas, Brunel, Valéry, Brung-Lefebvre, Maud, Bureau, Christophe, Burucoa, Christophe, Buscail, Louis, Buzele, Rodolphe, Cadot, Catherine, Cadranel, Jean-Francois, Cady, Anne, Caillon, Jocelyne, Camiade, Sabine, Campillo, Bernard, Carbonnel, Franck, Carbonnelle, Etienne, Cardot-Martin, Émilie, Cariou, Marie-Estelle, Carles, Michel, Caron, Francois, Carrara-Delarue, Lucrecia, Carrier, Paul, Castang, Céline, Castellano, Inès, Cattoir, Vincent, Caubet, Olivier, Causse, Xavier, Chabrol, Amélie, Chanard, Emmanuel, Chatagnon, Thomas, Chazouilleres, Olivier, Chedanni, Halima, Chevrel, Pauline, Chirol, Catherine, Chirouze, Catherine, Chouquer, Renaud, Clavière, Christophe, Codreuil, Sylvain, Colardelle, Philippe, Combarnous, François, Commeau, Grégory, Cornillet, Anne, Corvec, Stephane, Costa, Yannick, Couderc, Philippe, Couffon, Caroline, Courivaud, Cécile, Courtade, Henri, Cruchant, Etienne, Cuen, David, Culard, Jean-François, Cung, Hong Ahn, Dahyot, Sandrine, D'Altéroche, Louis, Dao, Manh Thông, Darfeuil, Fabien, Darnaud, Céline, Daure, Sophie, De Grossouvre-Taillefer, Ludivine, Debriel, Dominique, Debrueres, Jacques, Decaens, Thomas, Decambron, Audrey, Decre-Grapinet, Dominique, Degand, Nicolas, Dehaye, Bruno, Delacour, Thierry, Delarbe, Jean-Marie, Delobel, Pierre, Delpierre, Éric, Delrez, René, Delvert, Didier, Demartino, Sylvie, Deniel, Marie-Clémence, Denis, Bernard, Derumeaux, Guy, Desroches, Marine, Dessein, Rodrigue, Devillez, Simon, Deweerdt, Didier, Diamantis, Sylvain, Diaz, Emmanuel, Didier, Raffenot, Dimartino, Vincent, Dion, Ludivine, Djemai, Mohand, Doche, Christophe, Donascimento, Maud, Dorval, Ian, Douala, Carol, Doucet-Populaire, Florence, Drouillat, Valérie, Dubée, Vincent, Dudermel, Anne-France, Dumont, Betty, Dupin, Clarisse, Dupont, Mathieu, Dupont, Philippe, Dupuy, Marion, Dupuychaffray, Jean-Pierre, Durand, Francois, Dusser, Pascale, Duval, Valérie, Duveau, Nicolas, El-Azouzi, Abdelghani, El-Gharras, Hynd, Elsendoorn, Antoine, Emile, Loïc, Epaulard, Olivier, Etchepare, Nicolas, Etienne, Jean-Pierre, Eveillard, Mathieu, Evers, Annie, Fach, Joelle, Faizoun, Claudia, Fangous, Marie-Sarah, Farmachidi, Jean Pierre, Fatome, Armelle, Faulques, Bernard, Faure, Karine, Felix, Charlotte, Ferec, Marc, Ferey, Janine, Ferracci, Serge, Feryn, Jean-Marc, Fesler, Pierre, Fiette, Hélène, Flevin, Emilie, Floch, Pauline, Fort, Eric, Fortineau, Nicolas, Fourcade, Jacques, Fraissinet, François, Franck, Patricia, Françoise, Thiebaut, Fratte, Serge, Galempoix, Jean-Marc, Garcera, Yves, Garcia, Anne, Garcon, Pierre, Garret, Charlotte, Gayet, Clement, Gazeau, Pierre, Gerber, Florence, Gilles, Raclot, Gillot, Jean-Michel, Goarant, Eric, Godreuil, Sylvain, Goret, Julien, Gorret, Julie, Goujard, Cecile, Goulenok, Thiphaine, Gournay, Jérôme, Gousseff, Marie, Goux, Alain, Graf, Emmanuelle, Grange, Jean-Didier, Gravet, Alain, Greder-Belan, Alix, Gronier, Olivier, Grosset, Marine, Guellouz, Sabra, Guenenna, Dalida, Guerbaa, Mohammed, Guerin, Meggie, Guerrot, Dominique, Guery, Benoit, Gugenheim, Jean, Guidet, Bertrand, Guiheneuf, Raphael, Guillet-Caruba, Christelle, Guimard, Yves, Guinard, Jérome, Guindre, Laure, Hagege, Albert, Hagege, Hervé, Haineaux, Paul-Arthur, Hamon, Rémy, Hassan, Firas, Hassine, Mélanie, Helie, Ludovic, Herber-Mayne, Anne, Hervio, Pascale, Héry-Arnaud, Geneviève, Hitoto, Hikombo, Hubsch, Théophile, Hunaut, Nicolas, Hurtova, Monika, Husson-Wetzel, Stéphanie, Hutin, Pascal, Izopet, Théo, Jacob, Jean-Louis, Jacomet, Christine, Jaffar-Bandjee, Marie-Christine, Janvier, Fréderic, Jaulhac, Benoît, Jaureguiberry, Stephane, Javaud, Nicolas, Jeannot, Katty, Joundy, Noureddine, Kacem, Moez, Karama, Rouis, Karsenti, David, Kempf, Marie, Khatibi, Sarah, Kikolski, Florence, Kittirath, Christine, Koch, Stephane, Kouatchet-Achille, Tchamba, Krummel, Yves, La Combe, Karine, Labarriere, Damien, Laberenne, Jean-Eric, Lacroix, Hervé, Ladrat, Laure, Lagarde, Stéphanie, Lagasse, Jean-Paul, Laggoune, Ahmed-Saïd, Lambare, Benedicte, Landgraf, Nathalie, Landraud, Luce, Laude, Jean-Francois, Laurent, François, Lavigne, Jean-Philippe, Lavoue, Vincent, Le Berre, Rozenn, Le Goff, Vallérie, Lebars, Hervé, Lebrun, Armandine, Lecapitaine, Anne-Lise, Lechat, Sylvie, Lecoustumier, Alain, Ledreau, Gérard, Lefevre, Benjamin, Leflon, Véronique, Lefort, Agnès, Legall, Florence, Legoff, Isabelle, Legrand, Eric, Lehello, Simon, Le-Henaff-Bourhis, Catherine, Leleu, Olivier, Lelievre, Lucie, Lemaignen, Adrien, Lemaire, Xavier, Le-Maout, Charles, Lemblé, Chantal, Lemeille, Yolande, Lemenand, Olivier, Lemeunier, Violaine, Lemeur, Yannick, Lemierre, Sylvia, Leotard, Sophie, Lepileur, Lucie, Letellier-Demonchy, Claire, Levecq, Hervé, Levy, Marc, Limal, Nicolas, Locher, Christophe, Lopez, Benjamin, Loron, Marie-Charlotte, Loulergue, Joelle, Loury-Larivière, Isabelle, Loustaud-Ratti, Véronique, Macchi, Valèrie, Machado, Moise, Madaule, Serge, Mainardi, Jean-Luc, Males, Silvija, Malherbe, Philippe, Maneglier, Benjamin, Marceau, Maryline, Marcel, Kévin, Marmonier, Alain, Martha, Benoît, Martin, Xavier, Martin-Blondel, Guillaume, Martinez, Camille, Marty, Fabrice, Marty, Patrick, Matray, Olivier, Maurin, Arnaud, Mazerand, Sandie, Mazouz, Nadia, Medevielle, Muriel, Mercat, Alain, Méreghetti, Laurent, Merzoug, Noureddine, Meziane, Ilham, Michaud, Anthony, Michel, Marc, Michel, Pierre, Mignard, Sophie, Milesi-Lecat, Anne-Marie, Mion, Mathieu, Mnasri, Nabil, Mohareb, Abdo, Mohib, Samir, Moindrot, Henri, Monlun, Eric, Montewis, Audrey, Morin, Thierry, Moussata, Driffa, Muller, Sandrine, Muzellec, Valérie, Nancey, Stéphane, Nassereddine, Ahmad, Naude, Sebastien, Neau, Didier, Ovidiu, Negru Calin, Ngo, Thuy, Ngwhotue, Marthe-Andree, Nivet, Patrick, Nordmann, Patrice, Nousbaum, Jean-Baptiste, Nouvel, Bernadette, Obled, Stephane, Oswald, Eric, Otto, Marie-Pierre, Pageaux, Georges-Philippe, Papin, Gregory, Parant, Fabrice, Patenotte, Arnaud, Paupard, Thierry, Pauwels, Arnaud, Pawlotsky, Jean Michel, Pelloux, Hervé, Perlemuter, Gabriel, Peron, Jean-Marie, Pestel-Caron, Martine, Peter, Natasha, Petillon, Sophie, Petit, Richard, Petitprez, Helene, Pettinelli, Francois, Phelip, Jean Marc, Philit, Jean-Baptiste, Phoutthasang, Valérie, Pialoux, Gilles, Piau-Couapel, Caroline, Pichard, Benoit, Pichon, Maxime, Picon-Coste, Magali, Picque, Marie, Pierson, Henri, Piques, Jean Francois, Piton, Béatrice, Planade, Orianne, Plassart, Claire, Plésiat, Patrick, Ploy, Marie-Cécile, Poubeau, Patrice, Pouderoux, Philippe, Pouedras, Pascal, Pourbaix, Annabelle, Poynard, Thierry, Preau, Florence, Pricope, Dumitrita, Queffelec, Gwenaëlle, Queneherve, Lucille, Quentin, Thomas, Raffenot, Didier, Rakotoniaina, Daniella, Ramanantsoa, Celine, Ramarijaona, Solofoniaina, Rami-Arab, Lila, Raulin, Olivia, Rebibou, Jean Michel, Renault, David, Rey, Philippe, Riche, Agnès, Rigaud, Jean Philippe, Rivière, Antoine, Rivière, Brigitte, Robert, Jérôme, Roblot, Pascal, Roger, Helene, Rolland, Christophe, Rondinaud, Emilie, Rosa-Hezode, Isabelle, Roubille, Martine, Rouquette, Olivier, Roux, Juliette, Ruimy, Raymond, Sachot-Ollivier, Sonia, Sailler, Laurent, Salamant, Sarah, Sarbu-Pop, Silvia, Sartre, Jacques, Schmitt, François, Scribe-Outtas, Myriam, Sefrioui, David, Sehouane, Rachid, Sekhri, Hacène, Serfaty, Lawrence, Sevin, Odile, Shawali, Cédric, Siladi, Souad, Silvain, Christine, Simon, Mireille, Simonet, Batiste, Sinayoko, Leila, Sirach, Estelle, Smati, Mustafa, Smets, Aurélie, Soltani, Dhaoui, Sommabere, André, Soulier-Guerin, Karine, Soulillou, Jean Paul, Soupison, Alain, Souply, Laurent, Soussy, Claude-James, Stampfli, Claire, Strullu, Bernard, Suatean, Diana, Tadjerouni, Nacer, Talarmin, Jean-Philippe, Tankovic, Jacques, Tarroun, Abdullah, Tchuenbou, Juliette, Teboul, Jean-Louis, Tedlaouti, Husni, Tellini, Charlotte, Thabut, Dominique, Thannberger, Philippe, Thiebault, Henri, Thiebaut, Françoise, Thomazeau, Joséphine, Tielman, Guillaume, Timsit, Jean-Francois, Tognon, Patrick, Tougeron, David, Toure, Fatouma, Tran, Albert, Tranvouez, Jean-Luc, Trésallet, Christophe, Trubert, Lise, Tsakiris, Laurent, Twizeyimana, Eterne, Vachee, Anne, Valade, Hélène, Valat, Isabelle, Vandendriessche, Anne, Vandermee, Nathalie, Vanheste, Marc, Varon, Emmanuelle, Vasse, Marc, Vasseur, Philippe, Vaucel, Elisabeth, Vauthier, Anne, Verdavaine-Loidreau, Delphine, Verdet, Charlotte, Verdon, Renaud, Vergnaud, Michel, Véziris, Nicolas, Vignaud, Guillaume, Viguier, Jérôme, Villemain, Marc, Villeneuve, Laurent, Vimont-Vicary, Alexandre, Vincent, Thomas, Vuillemenot, Jean-Baptiste, Walewski, Violaine, Warmoes, Elodie, Watry, Hélène, Weber, Jean-Christophe, Witz, Marie Thérèse, Woerther, Paul-Louis, Yazdanpanah, Yazdan, Zamfir, Oana, Zarka, Jonathan, Zavadil, Patrick, Zeboudj, Nabil, Zerbib, Franck, Blanchard, Florian, Henry, Benoît, Vijayaratnam, Sofieya, Canouï, Etienne, Moura, Alexandra, Thouvenot, Pierre, Bracq-Dieye, Hélène, Tessaud-Rita, Nathalie, Valès, Guillaume, Diakité, Andrée, Leclercq, Alexandre, Lecuit, Marc, and Charlier, Caroline

Published
2024
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4. Listeria monocytogenes-associated spontaneous bacterial peritonitis in France: a nationwide observational study of 208 cases

Author

Blanchard, Florian, primary, Henry, Benoît, additional, Vijayaratnam, Sofieya, additional, Canouï, Etienne, additional, Moura, Alexandra, additional, Thouvenot, Pierre, additional, Bracq-Dieye, Hélène, additional, Tessaud-Rita, Nathalie, additional, Valès, Guillaume, additional, Diakité, Andrée, additional, Leclercq, Alexandre, additional, Lecuit, Marc, additional, Charlier, Caroline, additional, Abdou, Mohamed, additional, Abdulhai, Ayman, additional, Abdulhal, Ayman, additional, Abel, Samy, additional, Abergel, Armand, additional, Aberrane, Saïd, additional, Abraham, Bruno, additional, Adler, Maxime, additional, Agard, Christian, additional, Agha-Mir, Ilhem, additional, Aguilar, Claire, additional, Agulles, Baptiste, additional, Aldallal, Hamza, additional, Alric, Laurent, additional, Amiot, Xavier, additional, Andrau, Pierre, additional, Andrieux, Vladimir, additional, Ansart, Séverine, additional, Anty, Rodolphe, additional, Archambeaud, Isabelle, additional, Arem, Samir, additional, Armand, Laurence, additional, Aubailly, Lucie, additional, Audibert, Juliette, additional, Auguereau, Olivier, additional, Auvray, Christelle, additional, Aziz, Karime, additional, Bachelier, Marie-Nadège, additional, Bacquaert-Dufour, Karine, additional, Badet, Françoise, additional, Bahallah, Mohamed-Larbi, additional, Balanant, Hélène, additional, Baraduc, Régine, additional, Bardis, Alexandre, additional, Barraud, Olivier, additional, Barrier, Jocelyn, additional, Baudet, Antoine, additional, Baumert, Thomas, additional, Beaugerie, Laurent, additional, Bébéar, Cécile, additional, Becheur, Hakim, additional, Bemer, Pascale, additional, Benard, Caroline, additional, Benezet, Marie-Pierre, additional, Benmahammed, Mohammed, additional, Bennouna, Jaafar, additional, Benseddik, Zehaira, additional, Bensimon, Pierre-Yves, additional, Bental, Abdeslam, additional, Berete, Aliou, additional, Bergier, Jean-Michel, additional, Berkani, Wacila, additional, Bernardi, Franck, additional, Bert, Frederic, additional, Bertrou, Anne, additional, Beuret, Pascal, additional, Beurton-Chataigner, Isabelle, additional, Beuscart, Claude, additional, Beusnel, Christine, additional, Bevilacqua, Sibylle, additional, Beze, François, additional, Bideau, Karine, additional, Bidegain, Frédéric, additional, Billon, Laura, additional, Blaison, Gilles, additional, Blanc, Michèle, additional, Blanc, Pierre, additional, Blanchi, Sophie, additional, Blancho, Gilles, additional, Bland, Stephane, additional, Blondeau, Vincent, additional, Boldron, Amale, additional, Bon, Djemah, additional, Bonacorsi, Stéphane, additional, Bonzon, Lucas, additional, Borderon, Anaïs, additional, Botelho-Nevers, Elisabeth, additional, Bottlaender, Jacques, additional, Bouc-Boucher, Mathilde, additional, Bouchaud, Olivier, additional, Bougon, David, additional, Boukelikha, Khaled, additional, Bourlet, Thomas, additional, Boussoukaya, Samy, additional, Boutaleb, Hamza, additional, Bouziges, Nicole, additional, Bray, Philippe, additional, Bréchet, Caroline, additional, Bret, Laurent, additional, Brieu, Nathalie, additional, Briffaut, David, additional, Brochet, Christine, additional, Brulez-Des-Varannes, Stanislas, additional, Brunel, Valéry, additional, Brung-Lefebvre, Maud, additional, Bureau, Christophe, additional, Burucoa, Christophe, additional, Buscail, Louis, additional, Buzele, Rodolphe, additional, Cadot, Catherine, additional, Cadranel, Jean-Francois, additional, Cady, Anne, additional, Caillon, Jocelyne, additional, Camiade, Sabine, additional, Campillo, Bernard, additional, Carbonnel, Franck, additional, Carbonnelle, Etienne, additional, Cardot-Martin, Émilie, additional, Cariou, Marie-Estelle, additional, Carles, Michel, additional, Caron, Francois, additional, Carrara-Delarue, Lucrecia, additional, Carrier, Paul, additional, Castang, Céline, additional, Castellano, Inès, additional, Cattoir, Vincent, additional, Caubet, Olivier, additional, Causse, Xavier, additional, Chabrol, Amélie, additional, Chanard, Emmanuel, additional, Chatagnon, Thomas, additional, Chazouilleres, Olivier, additional, Chedanni, Halima, additional, Chevrel, Pauline, additional, Chirol, Catherine, additional, Chirouze, Catherine, additional, Chouquer, Renaud, additional, Clavière, Christophe, additional, Codreuil, Sylvain, additional, Colardelle, Philippe, additional, Combarnous, François, additional, Commeau, Grégory, additional, Cornillet, Anne, additional, Corvec, Stephane, additional, Costa, Yannick, additional, Couderc, Philippe, additional, Couffon, Caroline, additional, Courivaud, Cécile, additional, Courtade, Henri, additional, Cruchant, Etienne, additional, Cuen, David, additional, Culard, Jean-François, additional, Cung, Hong Ahn, additional, Dahyot, Sandrine, additional, D'Altéroche, Louis, additional, Dao, Manh Thông, additional, Darfeuil, Fabien, additional, Darnaud, Céline, additional, Daure, Sophie, additional, De Grossouvre-Taillefer, Ludivine, additional, Debriel, Dominique, additional, Debrueres, Jacques, additional, Decaens, Thomas, additional, Decambron, Audrey, additional, Decre-Grapinet, Dominique, additional, Degand, Nicolas, additional, Dehaye, Bruno, additional, Delacour, Thierry, additional, Delarbe, Jean-Marie, additional, Delobel, Pierre, additional, Delpierre, Éric, additional, Delrez, René, additional, Delvert, Didier, additional, Demartino, Sylvie, additional, Deniel, Marie-Clémence, additional, Denis, Bernard, additional, Derumeaux, Guy, additional, Desroches, Marine, additional, Dessein, Rodrigue, additional, Devillez, Simon, additional, Deweerdt, Didier, additional, Diamantis, Sylvain, additional, Diaz, Emmanuel, additional, Didier, Raffenot, additional, Dimartino, Vincent, additional, Dion, Ludivine, additional, Djemai, Mohand, additional, Doche, Christophe, additional, Donascimento, Maud, additional, Dorval, Ian, additional, Douala, Carol, additional, Doucet-Populaire, Florence, additional, Drouillat, Valérie, additional, Dubée, Vincent, additional, Dudermel, Anne-France, additional, Dumont, Betty, additional, Dupin, Clarisse, additional, Dupont, Mathieu, additional, Dupont, Philippe, additional, Dupuy, Marion, additional, Dupuychaffray, Jean-Pierre, additional, Durand, Francois, additional, Dusser, Pascale, additional, Duval, Valérie, additional, Duveau, Nicolas, additional, El-Azouzi, Abdelghani, additional, El-Gharras, Hynd, additional, Elsendoorn, Antoine, additional, Emile, Loïc, additional, Epaulard, Olivier, additional, Etchepare, Nicolas, additional, Etienne, Jean-Pierre, additional, Eveillard, Mathieu, additional, Evers, Annie, additional, Fach, Joelle, additional, Faizoun, Claudia, additional, Fangous, Marie-Sarah, additional, Farmachidi, Jean Pierre, additional, Fatome, Armelle, additional, Faulques, Bernard, additional, Faure, Karine, additional, Felix, Charlotte, additional, Ferec, Marc, additional, Ferey, Janine, additional, Ferracci, Serge, additional, Feryn, Jean-Marc, additional, Fesler, Pierre, additional, Fiette, Hélène, additional, Flevin, Emilie, additional, Floch, Pauline, additional, Fort, Eric, additional, Fortineau, Nicolas, additional, Fourcade, Jacques, additional, Fraissinet, François, additional, Franck, Patricia, additional, Françoise, Thiebaut, additional, Fratte, Serge, additional, Galempoix, Jean-Marc, additional, Garcera, Yves, additional, Garcia, Anne, additional, Garcon, Pierre, additional, Garret, Charlotte, additional, Gayet, Clement, additional, Gazeau, Pierre, additional, Gerber, Florence, additional, Gilles, Raclot, additional, Gillot, Jean-Michel, additional, Goarant, Eric, additional, Godreuil, Sylvain, additional, Goret, Julien, additional, Gorret, Julie, additional, Goujard, Cecile, additional, Goulenok, Thiphaine, additional, Gournay, Jérôme, additional, Gousseff, Marie, additional, Goux, Alain, additional, Graf, Emmanuelle, additional, Grange, Jean-Didier, additional, Gravet, Alain, additional, Greder-Belan, Alix, additional, Gronier, Olivier, additional, Grosset, Marine, additional, Guellouz, Sabra, additional, Guenenna, Dalida, additional, Guerbaa, Mohammed, additional, Guerin, Meggie, additional, Guerrot, Dominique, additional, Guery, Benoit, additional, Gugenheim, Jean, additional, Guidet, Bertrand, additional, Guiheneuf, Raphael, additional, Guillet-Caruba, Christelle, additional, Guimard, Yves, additional, Guinard, Jérome, additional, Guindre, Laure, additional, Hagege, Albert, additional, Hagege, Hervé, additional, Haineaux, Paul-Arthur, additional, Hamon, Rémy, additional, Hassan, Firas, additional, Hassine, Mélanie, additional, Helie, Ludovic, additional, Herber-Mayne, Anne, additional, Hervio, Pascale, additional, Héry-Arnaud, Geneviève, additional, Hitoto, Hikombo, additional, Hubsch, Théophile, additional, Hunaut, Nicolas, additional, Hurtova, Monika, additional, Husson-Wetzel, Stéphanie, additional, Hutin, Pascal, additional, Izopet, Théo, additional, Jacob, Jean-Louis, additional, Jacomet, Christine, additional, Jaffar-Bandjee, Marie-Christine, additional, Janvier, Fréderic, additional, Jaulhac, Benoît, additional, Jaureguiberry, Stephane, additional, Javaud, Nicolas, additional, Jeannot, Katty, additional, Joundy, Noureddine, additional, Kacem, Moez, additional, Karama, Rouis, additional, Karsenti, David, additional, Kempf, Marie, additional, Khatibi, Sarah, additional, Kikolski, Florence, additional, Kittirath, Christine, additional, Koch, Stephane, additional, Kouatchet-Achille, Tchamba, additional, Krummel, Yves, additional, La Combe, Karine, additional, Labarriere, Damien, additional, Laberenne, Jean-Eric, additional, Lacroix, Hervé, additional, Ladrat, Laure, additional, Lagarde, Stéphanie, additional, Lagasse, Jean-Paul, additional, Laggoune, Ahmed-Saïd, additional, Lambare, Benedicte, additional, Landgraf, Nathalie, additional, Landraud, Luce, additional, Laude, Jean-Francois, additional, Laurent, François, additional, Lavigne, Jean-Philippe, additional, Lavoue, Vincent, additional, Le Berre, Rozenn, additional, Le Goff, Vallérie, additional, Lebars, Hervé, additional, Lebrun, Armandine, additional, Lecapitaine, Anne-Lise, additional, Lechat, Sylvie, additional, Lecoustumier, Alain, additional, Ledreau, Gérard, additional, Lefevre, Benjamin, additional, Leflon, Véronique, additional, Lefort, Agnès, additional, Legall, Florence, additional, Legoff, Isabelle, additional, Legrand, Eric, additional, Lehello, Simon, additional, Le-Henaff-Bourhis, Catherine, additional, Leleu, Olivier, additional, Lelievre, Lucie, additional, Lemaignen, Adrien, additional, Lemaire, Xavier, additional, Le-Maout, Charles, additional, Lemblé, Chantal, additional, Lemeille, Yolande, additional, Lemenand, Olivier, additional, Lemeunier, Violaine, additional, Lemeur, Yannick, additional, Lemierre, Sylvia, additional, Leotard, Sophie, additional, Lepileur, Lucie, additional, Letellier-Demonchy, Claire, additional, Levecq, Hervé, additional, Levy, Marc, additional, Limal, Nicolas, additional, Locher, Christophe, additional, Lopez, Benjamin, additional, Loron, Marie-Charlotte, additional, Loulergue, Joelle, additional, Loury-Larivière, Isabelle, additional, Loustaud-Ratti, Véronique, additional, Macchi, Valèrie, additional, Machado, Moise, additional, Madaule, Serge, additional, Mainardi, Jean-Luc, additional, Males, Silvija, additional, Malherbe, Philippe, additional, Maneglier, Benjamin, additional, Marceau, Maryline, additional, Marcel, Kévin, additional, Marmonier, Alain, additional, Martha, Benoît, additional, Martin, Xavier, additional, Martin-Blondel, Guillaume, additional, Martinez, Camille, additional, Marty, Fabrice, additional, Marty, Patrick, additional, Matray, Olivier, additional, Maurin, Arnaud, additional, Mazerand, Sandie, additional, Mazouz, Nadia, additional, Medevielle, Muriel, additional, Mercat, Alain, additional, Méreghetti, Laurent, additional, Merzoug, Noureddine, additional, Meziane, Ilham, additional, Michaud, Anthony, additional, Michel, Marc, additional, Michel, Pierre, additional, Mignard, Sophie, additional, Milesi-Lecat, Anne-Marie, additional, Mion, Mathieu, additional, Mnasri, Nabil, additional, Mohareb, Abdo, additional, Mohib, Samir, additional, Moindrot, Henri, additional, Monlun, Eric, additional, Montewis, Audrey, additional, Morin, Thierry, additional, Moussata, Driffa, additional, Muller, Sandrine, additional, Muzellec, Valérie, additional, Nancey, Stéphane, additional, Nassereddine, Ahmad, additional, Naude, Sebastien, additional, Neau, Didier, additional, Ovidiu, Negru Calin, additional, Ngo, Thuy, additional, Ngwhotue, Marthe-Andree, additional, Nivet, Patrick, additional, Nordmann, Patrice, additional, Nousbaum, Jean-Baptiste, additional, Nouvel, Bernadette, additional, Obled, Stephane, additional, Oswald, Eric, additional, Otto, Marie-Pierre, additional, Pageaux, Georges-Philippe, additional, Papin, Gregory, additional, Parant, Fabrice, additional, Patenotte, Arnaud, additional, Paupard, Thierry, additional, Pauwels, Arnaud, additional, Pawlotsky, Jean Michel, additional, Pelloux, Hervé, additional, Perlemuter, Gabriel, additional, Peron, Jean-Marie, additional, Pestel-Caron, Martine, additional, Peter, Natasha, additional, Petillon, Sophie, additional, Petit, Richard, additional, Petitprez, Helene, additional, Pettinelli, Francois, additional, Phelip, Jean Marc, additional, Philit, Jean-Baptiste, additional, Phoutthasang, Valérie, additional, Pialoux, Gilles, additional, Piau-Couapel, Caroline, additional, Pichard, Benoit, additional, Pichon, Maxime, additional, Picon-Coste, Magali, additional, Picque, Marie, additional, Pierson, Henri, additional, Piques, Jean Francois, additional, Piton, Béatrice, additional, Planade, Orianne, additional, Plassart, Claire, additional, Plésiat, Patrick, additional, Ploy, Marie-Cécile, additional, Poubeau, Patrice, additional, Pouderoux, Philippe, additional, Pouedras, Pascal, additional, Pourbaix, Annabelle, additional, Poynard, Thierry, additional, Preau, Florence, additional, Pricope, Dumitrita, additional, Queffelec, Gwenaëlle, additional, Queneherve, Lucille, additional, Quentin, Thomas, additional, Raffenot, Didier, additional, Rakotoniaina, Daniella, additional, Ramanantsoa, Celine, additional, Ramarijaona, Solofoniaina, additional, Rami-Arab, Lila, additional, Raulin, Olivia, additional, Rebibou, Jean Michel, additional, Renault, David, additional, Rey, Philippe, additional, Riche, Agnès, additional, Rigaud, Jean Philippe, additional, Rivière, Antoine, additional, Rivière, Brigitte, additional, Robert, Jérôme, additional, Roblot, Pascal, additional, Roger, Helene, additional, Rolland, Christophe, additional, Rondinaud, Emilie, additional, Rosa-Hezode, Isabelle, additional, Roubille, Martine, additional, Rouquette, Olivier, additional, Roux, Juliette, additional, Ruimy, Raymond, additional, Sachot-Ollivier, Sonia, additional, Sailler, Laurent, additional, Salamant, Sarah, additional, Sarbu-Pop, Silvia, additional, Sartre, Jacques, additional, Schmitt, François, additional, Scribe-Outtas, Myriam, additional, Sefrioui, David, additional, Sehouane, Rachid, additional, Sekhri, Hacène, additional, Serfaty, Lawrence, additional, Sevin, Odile, additional, Shawali, Cédric, additional, Siladi, Souad, additional, Silvain, Christine, additional, Simon, Mireille, additional, Simonet, Batiste, additional, Sinayoko, Leila, additional, Sirach, Estelle, additional, Smati, Mustafa, additional, Smets, Aurélie, additional, Soltani, Dhaoui, additional, Sommabere, André, additional, Soulier-Guerin, Karine, additional, Soulillou, Jean Paul, additional, Soupison, Alain, additional, Souply, Laurent, additional, Soussy, Claude-James, additional, Stampfli, Claire, additional, Strullu, Bernard, additional, Suatean, Diana, additional, Tadjerouni, Nacer, additional, Talarmin, Jean-Philippe, additional, Tankovic, Jacques, additional, Tarroun, Abdullah, additional, Tchuenbou, Juliette, additional, Teboul, Jean-Louis, additional, Tedlaouti, Husni, additional, Tellini, Charlotte, additional, Thabut, Dominique, additional, Thannberger, Philippe, additional, Thiebault, Henri, additional, Thiebaut, Françoise, additional, Thomazeau, Joséphine, additional, Tielman, Guillaume, additional, Timsit, Jean-Francois, additional, Tognon, Patrick, additional, Tougeron, David, additional, Toure, Fatouma, additional, Tran, Albert, additional, Tranvouez, Jean-Luc, additional, Trésallet, Christophe, additional, Trubert, Lise, additional, Tsakiris, Laurent, additional, Twizeyimana, Eterne, additional, Vachee, Anne, additional, Valade, Hélène, additional, Valat, Isabelle, additional, Vandendriessche, Anne, additional, Vandermee, Nathalie, additional, Vanheste, Marc, additional, Varon, Emmanuelle, additional, Vasse, Marc, additional, Vasseur, Philippe, additional, Vaucel, Elisabeth, additional, Vauthier, Anne, additional, Verdavaine-Loidreau, Delphine, additional, Verdet, Charlotte, additional, Verdon, Renaud, additional, Vergnaud, Michel, additional, Véziris, Nicolas, additional, Vignaud, Guillaume, additional, Viguier, Jérôme, additional, Villemain, Marc, additional, Villeneuve, Laurent, additional, Vimont-Vicary, Alexandre, additional, Vincent, Thomas, additional, Vuillemenot, Jean-Baptiste, additional, Walewski, Violaine, additional, Warmoes, Elodie, additional, Watry, Hélène, additional, Weber, Jean-Christophe, additional, Witz, Marie Thérèse, additional, Woerther, Paul-Louis, additional, Yazdanpanah, Yazdan, additional, Zamfir, Oana, additional, Zarka, Jonathan, additional, Zavadil, Patrick, additional, Zeboudj, Nabil, additional, and Zerbib, Franck, additional

Published
2024
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11. Place des rechutes et de l'invasion de la paroi vésicale dans la physiopathologie des cystites récidivantes à Escherichia coli

Author

Vautrin, Nicolas, Alexandre, Kévin, Ribet, David, Dahyot, Sandrine, Leoz, Marie, Bernard, Estelle, Caron, François, Pestel-Caron, Martine, Mzembaba, Sandy, Dynamique Microbienne associée aux Infections Urinaires et Respiratoires (DYNAMICURE), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Service des maladies infectieuses et tropicales [Rouen], CHU Rouen, Normandie Université (NU), Nutrition, Inflammation et axe Microbiote-Intestin-Cerveau (ADEN), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Institute for Research and Innovation in Biomedicine (IRIB), Normandie Université (NU)-Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), and Département de microbiologie [CHU Rouen]

Subjects
[SDV.MP.VIR] Life Sciences [q-bio]/Microbiology and Parasitology/Virology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, [SDV.MP.PRO] Life Sciences [q-bio]/Microbiology and Parasitology/Protistology, [SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.MP.MYC] Life Sciences [q-bio]/Microbiology and Parasitology/Mycology, [SDV.MP.PRO]Life Sciences [q-bio]/Microbiology and Parasitology/Protistology, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology
Abstract

International audience; Escherichia coli est la bactérie la plus fréquemment responsable de cystites, qu'elles soient sporadiques (CS) ou récidivantes (CR : ≥ 2 épisodes en 6 mois). Les épisodes de CR peuvent être causés par des souches différentes (réinfection) ou par une même souche (rechute). Grâce à une cohorte prospective de patientes souffrant de CR ou de CS, l'objectif de cette étude était de déterminer la proportion de rechutes et de réinfections, et d'évaluer la place de l'internalisation des bactéries dans les cellules urothéliales dans le phénomène de rechute.

Published
2022

16. Role of the LytSR Two-Component Regulatory System in Staphylococcus lugdunensis Biofilm Formation and Pathogenesis

Author

Dahyot, Sandrine, primary, Oxaran, Virginie, additional, Niepceron, Maïté, additional, Dupart, Eddy, additional, Legris, Stéphanie, additional, Destruel, Laurie, additional, Didi, Jennifer, additional, Clamens, Thomas, additional, Lesouhaitier, Olivier, additional, Zerdoumi, Yasmine, additional, Flaman, Jean-Michel, additional, and Pestel-Caron, Martine, additional

Published
2020
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17. Comparative Genome Analysis of Staphylococcus lugdunensis Shows Clonal Complex-Dependent Diversity of the Putative Virulence Factor, ess/Type VII Locus

Author

Lebeurre, Jérémie, primary, Dahyot, Sandrine, additional, Diene, Seydina, additional, Paulay, Amandine, additional, Aubourg, Marion, additional, Argemi, Xavier, additional, Giard, Jean-Christophe, additional, Tournier, Isabelle, additional, François, Patrice, additional, and Pestel-Caron, Martine, additional

Published
2019
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18. Contribution to the understanding of the molecular mechanisms involved in the virulence of Staphylococcus lugdunensis

Author

Dahyot, Sandrine, Groupe de Recherche sur l'Adaptation Microbienne (GRAM 2.0), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU), Normandie Université, Martine Pestel-Caron, and STAR, ABES

Subjects
Fbi, [SDV.SA]Life Sciences [q-bio]/Agricultural sciences, [SDV.SA] Life Sciences [q-bio]/Agricultural sciences, Genotyping, [SDV.MHEP] Life Sciences [q-bio]/Human health and pathology, Virulence, Two-component regulatory system, Fbl, Epidemiology, MLVA, Système à deux composants, Variable number of tandem repeats, Staphylococcus lugdunensis, Génotypage, LytSR, Epidémiologie, Nombre variable de séquences répétées en tandem, TRST, [SDV.MHEP]Life Sciences [q-bio]/Human health and pathology
Abstract

Our work has sought to better understand mechanisms involved in Staphylococcus lugdunensis virulence, a species whose pathogenicity is close to that of Staphylococcus aureus. We performed the first functional characterization of a two-component regulatory system, LytSR, in this species. This system has been shown to be involved in the control of major metabolic processes and in virulence. It is indeed involved in biofilm formation, probably in connection with the control of cell death. LytSR is furthermore implicated in the pathogenesis of S. lugdunensis infections, as demonstrated in the infection model of the nematode Caenorhabditis elegans. To better characterize and monitor the diffusion of predominant clones in this species, we have in a second part developed three new typing methods (MLVA, TRST and fbl-typing), based on the polymorphism of variable number of tandem repeats. These methods were highly discriminant, allowing the definition of new genotypes in this clonal species. These tools are very promising for micro- and macro-epidemiological studies in S. lugdunensis, fbl-typing appearing in many ways as the frontline tool (http://fbl-typing.univ-rouen.fr/). Finally, we have shown that the variability of the binding of S. lugdunensis to fibrinogen in vitro can be partly explained by some fbl genetic variations., Nos travaux ont cherché à mieux comprendre les mécanismes à l’origine de la virulence de Staphylococcus lugdunensis, espèce au pouvoir pathogène proche de celui de Staphylococcus aureus. Nous avons procédé à la première caractérisation fonctionnelle chez cette espèce d’un système à deux composants, LytSR. Ce système s’est révélé impliqué dans le contrôle de processus métaboliques majeurs et dans la virulence. Il est en effet impliqué dans la formation de biofilm, probablement en lien avec le contrôle exercé sur la mort cellulaire. LytSR est de plus impliqué dans la pathogenèse des infections à S. lugdunensis, comme démontré dans le modèle d’infection du nématode Caenorhabditis elegans. Pour mieux caractériser et suivre la diffusion de clones prédominants chez cette espèce, nous avons dans un deuxième volet développé trois nouvelles méthodes de typage (MLVA, TRST et fbl-typing), reposant sur le polymorphisme de séquences répétées en tandem. Ces méthodes se sont révélées très discriminantes, permettant la définition de nouveaux génotypes chez cette espèce clonale. Ces outils sont à ce titre très prometteurs pour des études micro- comme macro-épidémiologiques chez S. lugdunensis, le fbl-typing apparaissant à bien des égards comme l’outil utilisable en première ligne (http://fbl-typing.univ-rouen.fr/). Enfin, nous avons montré que la variabilité de la liaison de S. lugdunensis au fibrinogène in vitro peut être en partie expliquée par des variations génétiques de fbl.

Published
2019

19. Contribution à la compréhension des mécanismes moléculaires impliqués dans la virulence de Staphylococcus lugdunensis

Author

Dahyot, Sandrine, Groupe de Recherche sur l'Adaptation Microbienne (GRAM 2.0), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU), Normandie Université, and Martine Pestel-Caron

Subjects
Fbi, [SDV.SA]Life Sciences [q-bio]/Agricultural sciences, Genotyping, Virulence, Two-component regulatory system, Fbl, Epidemiology, MLVA, Système à deux composants, Variable number of tandem repeats, Staphylococcus lugdunensis, Génotypage, LytSR, Epidémiologie, Nombre variable de séquences répétées en tandem, TRST, [SDV.MHEP]Life Sciences [q-bio]/Human health and pathology
Abstract

Our work has sought to better understand mechanisms involved in Staphylococcus lugdunensis virulence, a species whose pathogenicity is close to that of Staphylococcus aureus. We performed the first functional characterization of a two-component regulatory system, LytSR, in this species. This system has been shown to be involved in the control of major metabolic processes and in virulence. It is indeed involved in biofilm formation, probably in connection with the control of cell death. LytSR is furthermore implicated in the pathogenesis of S. lugdunensis infections, as demonstrated in the infection model of the nematode Caenorhabditis elegans. To better characterize and monitor the diffusion of predominant clones in this species, we have in a second part developed three new typing methods (MLVA, TRST and fbl-typing), based on the polymorphism of variable number of tandem repeats. These methods were highly discriminant, allowing the definition of new genotypes in this clonal species. These tools are very promising for micro- and macro-epidemiological studies in S. lugdunensis, fbl-typing appearing in many ways as the frontline tool (http://fbl-typing.univ-rouen.fr/). Finally, we have shown that the variability of the binding of S. lugdunensis to fibrinogen in vitro can be partly explained by some fbl genetic variations.; Nos travaux ont cherché à mieux comprendre les mécanismes à l’origine de la virulence de Staphylococcus lugdunensis, espèce au pouvoir pathogène proche de celui de Staphylococcus aureus. Nous avons procédé à la première caractérisation fonctionnelle chez cette espèce d’un système à deux composants, LytSR. Ce système s’est révélé impliqué dans le contrôle de processus métaboliques majeurs et dans la virulence. Il est en effet impliqué dans la formation de biofilm, probablement en lien avec le contrôle exercé sur la mort cellulaire. LytSR est de plus impliqué dans la pathogenèse des infections à S. lugdunensis, comme démontré dans le modèle d’infection du nématode Caenorhabditis elegans. Pour mieux caractériser et suivre la diffusion de clones prédominants chez cette espèce, nous avons dans un deuxième volet développé trois nouvelles méthodes de typage (MLVA, TRST et fbl-typing), reposant sur le polymorphisme de séquences répétées en tandem. Ces méthodes se sont révélées très discriminantes, permettant la définition de nouveaux génotypes chez cette espèce clonale. Ces outils sont à ce titre très prometteurs pour des études micro- comme macro-épidémiologiques chez S. lugdunensis, le fbl-typing apparaissant à bien des égards comme l’outil utilisable en première ligne (http://fbl-typing.univ-rouen.fr/). Enfin, nous avons montré que la variabilité de la liaison de S. lugdunensis au fibrinogène in vitro peut être en partie expliquée par des variations génétiques de fbl.

Published
2019

20. Additional file 6: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, Lebeurre, Jérémie, and Prévost, Gilles

Abstract

Genomic coordinates of RM systems identified in 15 S. lugdunensis strains according to the REBASE database. (DOCX 16 kb)

Published
2018
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21. Additional file 2: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, JĂŠrĂŠmie Lebeurre, and PrĂŠvost, Gilles

Abstract

ANI and average AAI of S. lugdunensis (A-B), S. aureus (C-D), and S. epidermidis (E-F) using the EDGAR interface. ANIs were calculated as the mean identity of all BLASTN matches that showed more than 30% overall sequence identity over at least 70% of an alignable region. (PPTX 667 kb)

Published
2018
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22. Additional file 8: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, JĂŠrĂŠmie Lebeurre, and PrĂŠvost, Gilles

Abstract

Genome accession numbers from GenBank database of staphylococci. Clinical and geographical origins of S. lugdunensis strains. (DOCX 18 kb)

Published
2018
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23. Additional file 1: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, JĂŠrĂŠmie Lebeurre, and PrĂŠvost, Gilles

Abstract

Pan-genome and core genome development projections for S. lugdunensis (A), S. epidermidis (B), and S. aureus (C). (DOCX 19 kb)

Published
2018
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24. Additional file 3: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, Lebeurre, Jérémie, and Prévost, Gilles

Abstract

CRISPRs identified in 15 S. lugdunensis genomes using CRISPRFinder (available at: http://crispr.i2bc.paris-saclay.fr/ ). (DOCX 22 kb)

Published
2018
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25. Additional file 7: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, JĂŠrĂŠmie Lebeurre, and PrĂŠvost, Gilles

Abstract

Pairwise alignment results according to EMBOSS Needle for the 3 loci of the Type I RM systems identified in S. lugdunensis VISLISI_33 and S. aureus MW2. (DOCX 574 kb)

Published
2018
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26. Additional file 4: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, JĂŠrĂŠmie Lebeurre, and PrĂŠvost, Gilles

Abstract

Type IIIA CRISPR/Cas system alignments from S. lugdunensis strains HKU0901, N920143, VISLISI_27, VISLISI_33, and VISLISI_37. Nucleotide BLAST alignments were performed using Easyfig (v.2.2.2). (PDF 225 kb)

Published
2018
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27. Additional file 5: of Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Author

Argemi, Xavier, Matelska, Dorota, Ginalski, Krzysztof, Riegel, Philippe, Hansmann, Yves, Bloom, Jochen, Pestel-Caron, Martine, Dahyot, Sandrine, Lebeurre, Jérémie, and Prévost, Gilles

Abstract

MazEF operon comparison in 15 S. lugdunensis genomes, and in five other Staphylococcus species. All nucleotide BLAST comparisons were performed using Easyfig (v.2.2.2). (PDF 398 kb)

Published
2018
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29. Efficacy of temocillin against MDR Enterobacterales: a retrospective cohort study.

Author

Alexandre, Kévin, Rohello, François Leysour de, Dahyot, Sandrine, Etienne, Manuel, Tiret, Isabelle, Gillibert, André, Pestel-Caron, Martine, Caron, François, and Leysour de Rohello, François

Abstract

Objectives: EUCAST recently advised against temocillin use, except for non-serious urinary tract infections (UTI) caused by Escherichia coli, Klebsiella spp. (except Klebsiella aerogenes) and Proteus mirabilis (EKP) treated with a dose of 2 g q8h. We aimed to analyse our practice in the context of a larger temocillin use in France.Patients and Methods: All ≥3 day temocillin prescriptions from 2016 to 2019 were reviewed, with reference to French recommendations and a susceptibility breakpoint of 8 mg/L. The primary outcome was early clinical failure (antibiotic switch, relapse or death within 10 days after the completion of antibiotic treatment).Results: Overall, 153 cases were analysed: 123 cases of UTI (80.4%) and 133 cases of monomicrobial infection with Enterobacterales (86.9%). A total of 160 Enterobacterales were isolated, comprising 108 (67.5%) ESBL producers and 30 (20.7%) non-EKP species. The rate of early clinical failure was 9.2% and was significantly lower for UTI compared with non-UTI (4.9% versus 26.7%, P = 0.001) and for sepsis compared with severe sepsis or septic shock (6.2% versus 25%, P = 0.011). It was not different between 2 g q12h and 2 g q8h doses (10% versus 7.4%, P = 0.81) and between EKP and other Enterobacterales (8.7% versus 14.3%, P = 0.41).Conclusions: EUCAST recommendations on urinary isolates seem to be too restrictive. Our data support the efficacy of temocillin at a dose of 2 g q12h to treat patients with non-severe complicated UTI caused by MDR Enterobacterales with an MIC of ≤8 mg/L, whatever the species. [ABSTRACT FROM AUTHOR]

Published
2021
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30. Whole-Genome Sequencing of Seven Strains of Staphylococcus lugdunensis Allows Identification of Mobile Genetic Elements

Author

Argemi, Xavier, Martin, Véronique, Loux, Valentin, Dahyot, Sandrine, Lebeurre, Jérémie, Guffroy, Aurélien, Martin, Mickael, Velay, Aurélie, Keller, Daniel, Riegel, Philippe, Hansmann, Yves, Paul, Nicodème, and Prévost, Gilles

Subjects
next generation sequencing, Recombination, Genetic, plasmids, Genomic Islands, Virulence Factors, Prophages, Staphylococcus lugdunensis, Aucun, Molecular Sequence Annotation, Staphylococcal Infections, Sciences du Vivant [q-bio]/Microbiologie et Parasitologie, Genome Report, virulence, Interspersed Repetitive Sequences, Genome, Bacterial
Abstract

Coagulase negative staphylococci are normal inhabitant of the human skin flora that account for an increasing number of infections, particularly hospital-acquired infections. Staphylococcus lugdunensis has emerged as a most virulent species causing various infections with clinical characteristics close to what clinicians usually observe with Staphylococcus aureus and both bacteria share more than 70% of their genome. Virulence of S. aureus relies on a large repertoire of virulence factors, many of which are encoded on mobile genetic elements. S. lugdunensis also bears various putative virulence genes but only one complete genome with extensive analysis has been published with one prophage sequence (φSL2) and a unique plasmid was previously described. In this study, we performed de novo sequencing, whole genome assembly and annotation of seven strains of S. lugdunensis from VISLISI clinical trial. We searched for the presence of virulence genes and mobile genetics elements using bioinformatics tools. We identified four new prophages, named φSL2 to φSL4, belonging to the Siphoviridae class and five plasmids, named pVISLISI_1 to pVISLISI_5. Three plasmids are homologous to known plasmids that include, amongst others, one S. aureus plasmid. The two other plasmids were not described previously. This study provides a new context for the study of S. lugdunensis virulence suggesting the occurrence of several genetic recombination' with other staphylococci.

Published
2017

31. Comparative Genome Analysis of Staphylococcus lugdunensis Shows Clonal Complex-Dependent Diversity of the Putative Virulence Factor, ess /Type VII Locus.

Author

Lebeurre, Jérémie, Dahyot, Sandrine, Diene, Seydina, Paulay, Amandine, Aubourg, Marion, Argemi, Xavier, Giard, Jean-Christophe, Tournier, Isabelle, François, Patrice, and Pestel-Caron, Martine

Subjects
COMPARATIVE genomics, MOBILE genetic elements, DRUG resistance in bacteria, COMPARATIVE studies, GREATER wax moth, STAPHYLOCOCCUS, MICROCOCCACEAE
Abstract

Staphylococcus lugdunensis is a commensal bacterium of human skin that has emerged as a virulent Coagulase-Negative Staphylococcus in both community-acquired and healthcare associated infections. Genotyping methods have shown a clonal population structure of this pathogen but failed to identify hypervirulent lineages. Here, complete genomes of three pathogenic and three carriage S. lugdunensis strains were obtained by Single-Molecule sequencing (PacBio) and compared to 15 complete genomes available in GenBank database. The aim was to identify (i) genetic determinants specific to pathogenic or carriage strains or specific to clonal complexes (CCs) defined by MultiLocus Sequence Typing, and (ii) antibiotic resistance genes and new putative virulence factors encoded or not by mobile genetic elements (MGE). Comparative genomic analysis did not show a strict correlation between gene content and the ability of the six strains to cause infections in humans and in a Galleria mellonella infection model. However, this study identified new MGEs (five prophages, two genomic islands and one plasmid) and genetic variations of some putative virulence-associated loci , especially in CC3 strains. For a clonal population, high variability and eight CC-dependent genetic organizations were observed for the ess locus , which encodes a putative type VII secretion system (T7SS) homologous to that of S. aureus. Further phenotypic and functional studies are needed to characterize this particular CC3 and to evaluate the role of T7SS in the virulence of S. lugdunensis. [ABSTRACT FROM AUTHOR]

Published
2019
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32. La carte Vitale permet de prédire l'antibiorésistance à l'échelon individuel

Author

Delbos, Valérie, Dahyot, Sandrine, Chrin, Nicolas, Fabre, Roland, Pestel-Caron, Martine, Kuhn, Francis, Etienne, Manuel, Benichou, Jacques, Caron, Francois, Groupe de Recherche sur l'Adaptation Microbienne (GRAM 2.0), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU), Hôpital Charles Nicolle [Rouen], Laboratoire d'analyse de biologie médicale [Elbeuf], Direction Régionale du Service Médical de Normandie (DRSM Normandie), Bordeaux population health (BPH), Université de Bordeaux (UB)-Institut de Santé Publique, d'Épidémiologie et de Développement (ISPED)-Institut National de la Santé et de la Recherche Médicale (INSERM), and Mzembaba, Sandy

Subjects
[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, [SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.MP] Life Sciences [q-bio]/Microbiology and Parasitology, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2016

33. Whole genome sequencing of 7 strains of Staphylococcus lugdunensis allows identification of mobile genetic elements

Author

Argemi, Xavier, primary, Martin, Véronique, additional, Loux, Valentin, additional, Dahyot, Sandrine, additional, Lebeurre, Jérémie, additional, Guffroy, Aurélien, additional, Martin, Mickael, additional, Velay, Aurélie, additional, Keller, Daniel, additional, Riegel, Philippe, additional, Hansmann, Yves, additional, Paul, Nicodème, additional, and Prévost, Gilles, additional

Published
2017
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34. Caractérisation fonctionnelle de l'opéron LytSR de Staphylococcus lugdunensis

Author

Dahyot, Sandrine, Oxaran, Virginie, Niepceron, Maïté, Dupart, E., Legris, Stéphanie, Zerdoumi, Yasmine, Flaman, J-M., Pestel-Caron, Martine, Groupe de Recherche sur l'Adaptation Microbienne (GRAM 2.0), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU), Génétique du cancer et des maladies neuropsychiatriques (GMFC), Normandie Université (NU)-Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Mzembaba, Sandy, Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Université de Rouen Normandie (UNIROUEN)

Subjects
[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, [SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.MP] Life Sciences [q-bio]/Microbiology and Parasitology, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2015

37. Are Escherichia coli causing recurrent cystitis just ordinary Uropathogenic E. coli (UPEC) strains?

Author

Vautrin N, Dahyot S, Leoz M, Caron F, Grand M, Feldmann A, Gravey F, Legris S, Ribet D, Alexandre K, and Pestel-Caron M

Abstract

Specific determinants associated with Uropathogenic Escherichia coli (UPEC) causing recurrent cystitis are still poorly characterized. The aims of this study were (i) to describe genomic and phenotypic traits associated with recurrence using a large collection of recurrent and paired sporadic UPEC isolates, and (ii) to explore within-host genomic adaptation associated with recurrence using series of 2 to 5 sequential UPEC isolates. Whole genome comparative analyses between 24 recurrent cystitis isolates (RCIs) and 24 phylogenetically paired sporadic cystitis isolates (SCIs) suggested a lower prevalence of putative mobile genetic elements (MGE) in RCIs, such as plasmids and prophages. The intra-patient evolution of the 24 RCI series over time was characterized by SNP occurrence in genes involved in metabolism or membrane transport, and by plasmid loss in 5 out of the 24 RCI series. Genomic evolution occurred early in the course of recurrence, suggesting rapid adaptation to strong selection pressure in the urinary tract. However, RCIs did not exhibit specific virulence factor determinants and could not be distinguished from SCIs by their fitness, biofilm formation, or ability to invade HTB-9 bladder epithelial cells. Taken together, these results suggest a rapid but not convergent adaptation of RCIs that involves both strain- and host-specific characteristics.

Published
2023
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38. Contribution of Antibiotic Susceptibility Testing and CH Typing Compared to Next-Generation Sequencing for the Diagnosis of Recurrent Urinary Tract Infections Due to Genetically Identical Escherichia coli Isolates: a Prospective Cohort Study of Cystitis in Women.

Author

Vautrin N, Alexandre K, Pestel-Caron M, Bernard E, Fabre R, Leoz M, Dahyot S, and Caron F

Subjects
Humans, Female, Prospective Studies, Reinfection, Disease Susceptibility, Recurrence, Anti-Bacterial Agents pharmacology, Virulence Factors genetics, High-Throughput Nucleotide Sequencing, Escherichia coli Infections drug therapy, Escherichia coli Infections diagnosis, Urinary Tract Infections diagnosis, Cystitis diagnosis, Uropathogenic Escherichia coli genetics
Abstract

Recurrent cystitis is a common disease in women, mainly due to uropathogenic Escherichia coli (UPEC). For decades, typing methods now considered obsolete suggested that relapse by the same clone is dominant over reinfection, most UPEC strains being otherwise fully susceptible to antibiotics. We aimed to update these data. Thanks to a prospective study over 17 months, we recruited 323 women with cystitis. Of these, 251 of them had sporadic infection and 72 had recurrence, with 2 to 9 episodes per patient for a total of 131 UPEC isolates and 145 UPEC pairs at patient level. Phylogroups B2 (52.4%) and D (14.1%) were overall dominant, as expected due to their particular urovirulence. CH typing identified 119 distinct profiles with no CH type particularly associated with recurrence. Relapse was attested by CH typing for only 30.6% (22 out of 72), with very diverse situations ranging from all episodes due to the same clone to alternating reinfections and relapses. Next-generation sequencing confirmed the clonality for all but two of the 145 UPEC pairs. Antibiotic resistance was common for recurrent cystitis isolates (only 25 [17.2%] out of 145 UPEC pairs were fully susceptible), allowing us to predict UPEC clonality. Indeed, antibiotic susceptibility profile matched CH typing for 104 (71.7%) pairs. Finally, we demonstrated a large genetic diversity among UPEC isolates responsible for cystitis in women, even in cases of recurrence for which reinfection appeared dominant over relapse. Recurrent cystitis appears to be a heterogeneous disease requiring tailored treatment and prevention. IMPORTANCE More than half of women will experience cystitis during their lifetime. Among these women, 25% will experience a second episode within the following 6 months. It is epidemiologically important to discriminate relapses from reinfections. Relapse identification relies on long and laborious methods and might influence treatment. Therefore, the designation of time- and cost-effective strategies for this goal is of particular interest. Our work suggests using CH typing and antibiotic susceptibility profiles to type Escherichia coli, the main uropathogen., Competing Interests: The authors declare no conflict of interest.

Published
2023
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39. Whole-Genome Sequencing of Seven Strains of Staphylococcus lugdunensis Allows Identification of Mobile Genetic Elements.

Author

Argemi X, Martin V, Loux V, Dahyot S, Lebeurre J, Guffroy A, Martin M, Velay A, Keller D, Riegel P, Hansmann Y, Paul N, and Prévost G

Subjects
Genome, Bacterial, Genomic Islands, Interspersed Repetitive Sequences, Molecular Sequence Annotation, Prophages, Recombination, Genetic, Staphylococcal Infections microbiology, Staphylococcus lugdunensis pathogenicity, Virulence Factors genetics, Staphylococcus lugdunensis classification, Staphylococcus lugdunensis genetics
Abstract

Coagulase negative staphylococci are normal inhabitant of the human skin flora that account for an increasing number of infections, particularly hospital-acquired infections. Staphylococcus lugdunensis has emerged as a most virulent species causing various infections with clinical characteristics close to what clinicians usually observe with Staphylococcus aureus and both bacteria share more than 70% of their genome. Virulence of S. aureus relies on a large repertoire of virulence factors, many of which are encoded on mobile genetic elements. S. lugdunensis also bears various putative virulence genes but only one complete genome with extensive analysis has been published with one prophage sequence (φSL2) and a unique plasmid was previously described. In this study, we performed de novo sequencing, whole genome assembly and annotation of seven strains of S. lugdunensis from VISLISI clinical trial. We searched for the presence of virulence genes and mobile genetics elements using bioinformatics tools. We identified four new prophages, named φSL2 to φSL4, belonging to the Siphoviridae class and five plasmids, named pVISLISI_1 to pVISLISI_5. Three plasmids are homologous to known plasmids that include, amongst others, one S. aureus plasmid. The two other plasmids were not described previously. This study provides a new context for the study of S. lugdunensis virulence suggesting the occurrence of several genetic recombination' with other staphylococci., (© The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)

Published
2017
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