1. FedECA: A Federated External Control Arm Method for Causal Inference with Time-To-Event Data in Distributed Settings
- Author
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Terrail, Jean Ogier du, Klopfenstein, Quentin, Li, Honghao, Mayer, Imke, Loiseau, Nicolas, Hallal, Mohammad, Debouver, Michael, Camalon, Thibault, Fouqueray, Thibault, Castro, Jorge Arellano, Yanes, Zahia, Dahan, Laetitia, Taïeb, Julien, Laurent-Puig, Pierre, Bachet, Jean-Baptiste, Zhao, Shulin, Nicolle, Remy, Cros, Jérome, Gonzalez, Daniel, Carreras-Torres, Robert, Velasco, Adelaida Garcia, Abdilleh, Kawther, Doss, Sudheer, Balazard, Félix, and Andreux, Mathieu
- Subjects
Statistics - Methodology ,Computer Science - Distributed, Parallel, and Cluster Computing ,Computer Science - Machine Learning - Abstract
External control arms (ECA) can inform the early clinical development of experimental drugs and provide efficacy evidence for regulatory approval. However, the main challenge in implementing ECA lies in accessing real-world or historical clinical trials data. Indeed, regulations protecting patients' rights by strictly controlling data processing make pooling data from multiple sources in a central server often difficult. To address these limitations, we develop a new method, 'FedECA' that leverages federated learning (FL) to enable inverse probability of treatment weighting (IPTW) for time-to-event outcomes on separate cohorts without needing to pool data. To showcase the potential of FedECA, we apply it in different settings of increasing complexity culminating with a real-world use-case in which FedECA provides evidence for a differential effect between two drugs that would have otherwise gone unnoticed. By sharing our code, we hope FedECA will foster the creation of federated research networks and thus accelerate drug development., Comment: code available at: https://github.com/owkin/fedeca, bug in SMD computation present in v1 and v2 has been fixed, many experiments on real data have been added + fix in YODA experiments using imputed data instead of raw data (v3->v4) as well as affiliations fix + more precise wording for acknowledgments
- Published
- 2023