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359 results on '"DNA Footprinting methods"'

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1. A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma.

2. Uncovering uncharacterized binding of transcription factors from ATAC-seq footprinting data.

3. GeF-seq: A Simple Procedure for Base-Pair Resolution ChIP-seq.

4. XL-DNase-Seq: Footprinting Analysis of Dynamic Transcription Factors.

5. Genome-wide quantification of transcription factor binding at single-DNA-molecule resolution using methyl-transferase footprinting.

6. The native cistrome and sequence motif families of the maize ear.

7. Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms.

8. Molecular Co-occupancy Identifies Transcription Factor Binding Cooperativity In Vivo.

9. Using an L7Ae-Tethered, Hydroxyl Radical-Mediated Footprinting Strategy to Identify and Validate Kink-Turns in RNAs.

10. In Vivo Footprinting Analysis in Trichoderma reesei.

11. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.

12. CUT&RUN detects distinct DNA footprints of RNA polymerase II near the transcription start sites.

13. ATAC-seq with unique molecular identifiers improves quantification and footprinting.

14. Molecular Footprints of the Immune Assault on Pancreatic Beta Cells in Type 1 Diabetes.

15. Disome and Trisome Profiling Reveal Genome-wide Targets of Ribosome Quality Control.

16. Selective 40S Footprinting Reveals Cap-Tethered Ribosome Scanning in Human Cells.

17. TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence.

18. The Ferric Uptake Regulator Represses Type VI Secretion System Function by Binding Directly to the clpV Promoter in Salmonella enterica Serovar Typhimurium.

19. XL-DNase-seq: improved footprinting of dynamic transcription factors.

20. Early Parity Epigenetic Footprint of FOXA1 Gene Body in Normal Breast Tissue of Iranian Women

21. Identification of transcription factor binding sites using ATAC-seq.

22. Evaluation of Nrf2 with Exposure to Nanoparticles.

23. Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.

24. A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization.

25. [Ultrasonic Footprinting].

26. Accurate and sensitive quantification of protein-DNA binding affinity.

27. DMS-Seq for In Vivo Genome-wide Mapping of Protein-DNA Interactions and Nucleosome Centers.

28. Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints.

29. Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning.

30. Single molecule high-throughput footprinting of small and large DNA ligands.

31. Rce1, a novel transcriptional repressor, regulates cellulase gene expression by antagonizing the transactivator Xyr1 in Trichoderma reesei.

32. Genome-Wide Analysis of ResD, NsrR, and Fur Binding in Bacillus subtilis during Anaerobic Fermentative Growth by In Vivo Footprinting.

33. Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity.

34. Investigation of G-quadruplex formation in the FGFR2 promoter region and its transcriptional regulation by liensinine.

35. DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.

36. Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome.

37. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.

38. Use of Nonradiochemical DNAse Footprinting to Analyze c-di-GMP Modulation of DNA-Binding Proteins.

39. Bacteriophage T5 gene D10 encodes a branch-migration protein.

40. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.

41. Study of G-quadruplexes in the STAT3 gene using electrospray ionization mass spectrometry.

42. Nuclease Footprints in Sperm Project Past and Future Chromatin Regulatory Events.

43. Analysis of computational footprinting methods for DNase sequencing experiments.

45. Genome-wide footprinting: ready for prime time?

46. Genomic footprinting.

47. Wellington-bootstrap: differential DNase-seq footprinting identifies cell-type determining transcription factors.

48. Functional footprinting of regulatory DNA.

49. A Role for Autoinhibition in Preventing Dimerization of the Transcription Factor ETS1.

50. BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.

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