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California Agriculture - All Issues

Agricultural tourism (also known as agritourism and agrotourism) can have significant benefits for farmers and communities in the agricultural-urban interface of San Diego and other metropolitan counties. Results from a visitor study indicate that agricultural tourism has substantial economic impacts on local economies. In addition, agritourism provides opportunities for diversification and economic incentives for growers, promotes economic development and helps educate the public about the important contributions of agriculture to the county's economy and quality of life.

Apple growers are interested in organic production to take advantage of higher market prices while reducing pesticide inputs. In a Sonoma County study, it was relatively easy and comparable in cost to maintain good tree vigor organically. However, severe insect and disease problems greatly reduced the yield and market value of organic apples compared to conventionally grown apples. The organic production system was also more expensive and more complicated to manage, creating greater risk for the grower. Although organically grown fruit could be sold at higher prices, the price differential was not sufficient to justify the losses, the need for increased management and the additional risk involved.

Small farms contribute new crops and new practices to agricultural production, and to achieve efficiency, some use resources as successfully as do much larger operations. Small farms, it is hoped, will continue their vital role in U.S. agriculture—even as major changes occur today in international trade.

Models developed on U.S. pistachio production simulate grower prices under scenarios of varying import levels and carryover stocks. Grower prices have significantly varied for 13 years, partly because of changes in import levels and domestic production. Bearing acreage has increased dramatically, and as nonbearing acreages mature, substantial growth in production is expected. In 1979, the fledgling U.S. pistachio industry produced 1,000 tons; in 1990, production was more than 58,000 tons. Anticipating future grower prices under alternative market scenarios is of interest, particularly as global political conditions change.

Abstract Laterally directed explosive eruptions are responsible for multiple fatalities over the past decade and are an increasingly important volcanology problem. To understand the energy dynamics for these events, we collected field-scale explosion data from nine acoustic sensors surrounding a tiltable cannon as part of an exploratory experimental design. For each cannon discharge, the blast direction was varied systematically at 0°, 12°, and 24° from vertical, capturing acoustic wavefield directivity related to the tilt angle. While each event was similar in energy discharge potential, the resulting acoustic signal features were variable event-to-event, producing non-repetitious waveforms and spectra. Systematic features were observed in a subset of individual events for vertical and lateral discharges. For vertical discharges, the acoustic energy had a uniform radiation pattern. The lateral discharges showed an asymmetric radiation pattern with higher frequencies in the direction of the blast and depletion of those frequencies behind the cannon. Results suggest that, in natural volcanic systems, near-field blast directionality may be elucidated from acoustic sensors in absence of visual data, with implications for volcano monitoring and hazard assessment. Graphical Abstract

This review dives deep into how earthquakes affect volcanoes, specifically into the relation between tectonic seismic activity and subsequent eruptions. Activity may increase in any volcanic setting in the 2–5 years following an earthquake, and especially at volcanic centres featuring vigorous hydrothermal activity.

Objective: Type 2 diabetes mellitus (T2DM) affects 10% of Americans and is associated with an increased incidence of cancer. Statins are first-line cholesterol-lowering medications in the treatment of hyperlipidemia. Several studies have demonstrated a relationship between statin use and reduced cancer incidence. We examined the cancer benefits of statin subtypes, with specific attention to disease-free survival (DFS) and overall survival (OS). Methods: This retrospective review included adults with T2DM diagnosed with solid tumors at Roswell Park Cancer Institute in Buffalo, NY, USA (2003–2010). Individuals with gestational diabetes, incomplete records, or diagnosed with rare solid tumors were excluded. Follow-up began at the date of diagnosis and ended with the first confirmed recurrence, death, or loss of contact. Demographics were assessed by Chi-square, Kaplan–Meier survival analyses, and Cox proportional hazards regression. Findings: Overall, 1102 patients met inclusion criteria, 52.1% of the study participants were female, and 578 participants (52.5%) died during the follow-up period which ranged from 0 to 156 months. Hydrophilic statin use was associated with improved DFS at 5-year follow-up (41.0% vs. 36.9%, P = 0.0077) compared to lipophilic statin use. Multivariate regression revealed that hydrophilic statins were associated with improved DFS (hazard ratio [HR]: 0.706, 95% confidence interval [CI]: 0.526–0.947) and OS (HR: 0.685, 95% CI: 0.503–0.934). Pravastatin was associated with improved OS (HR: 0.674, 95% CI: 0.471–0.964). Conclusion: In patients with T2DM and cancer, hydrophilic statins, and pravastatin in particular, are associated with improved DFS as well as OS. Further research examining the cancer-specific effects of hydrophilic and lipophilic statins is needed to better understand their beneficial effects.

Abstract Applying machine learning to healthcare sheds light on evidence-based decision making and has shown promises to improve healthcare by combining clinical knowledge and biomedical data. However, medicine and data science are not synchronized. Oftentimes, researchers with a strong data science background do not understand the clinical challenges, while on the other hand, physicians do not know the capacity and limitation of state-of-the-art machine learning methods. The difficulty boils down to the lack of a common interface between two highly intelligent communities due to the privacy concerns and the disciplinary gap. The School of Biomedical Informatics (SBMI) at UTHealth is a pilot in connecting both worlds to promote interdisciplinary research. Recently, the Center for Secure Artificial Intelligence For hEalthcare (SAFE) at SBMI is organizing a series of machine learning healthcare hackathons for real-world clinical challenges. We hosted our first Hackathon themed centered around Sudden Unexpected Death in Epilepsy and finding ways to recognize the warning signs. This community effort demonstrated that interdisciplinary discussion and productive competition has significantly increased the accuracy of warning sign detection compared to the previous work, and ultimately showing a potential of this hackathon as a platform to connect the two communities of data science and medicine.

Volcanic ballistics are the main hazard to life and infrastructure from Strombolian eruptions, which are a tourist drawcard, exposing people to this hazard. Most research to date has been to understand this style of eruption and how ballistics form and travel. However, little focus has been placed on how ballistics are distributed within ballistic fields or the inclusion of this data into hazard and risk assessments. In this study we used a UAV to image the ballistic field, and cameras to record eruptions at Yasur Volcano, Vanuatu from 28 July – 2 August and 17 – 19 October 2016. We present the mapped distributions from the two trips, how the field changes with distance and direction from the vent, and how eruption dynamics influence these changes. Our evidence for directionality results in considerable variation in summit ballistic hazard and is an important consideration for ballistic hazard and risk assessments.

Abstract Background Rabies is endemic in southern Bhutan, associated with 1–2 human deaths and high post exposure prophylaxis (PEP) costs annually. Evaluation of clinicians’ management of human cases potentially exposed to rabies could contribute to improving PEP prescribing practices to both reduce unnecessary costs associated with PEP and reach the target of zero human deaths due to rabies by 2023. Methods A cross-sectional survey of 50 clinicians’ management of human cases potentially exposed to rabies was conducted in 13 health centers in high-rabies-risk areas of Bhutan during February–March 2016. Results Data were collected on clinicians’ management of 273 human cases potentially exposed to rabies. The 50 clinicians comprised health assistants or clinical officers (55%) and medical doctors (45%) with a respective median of 19, 21 and 2 years’ experience. There was poor agreement between clinicians’ rabies risk assessment compared with an independent assessment for each case based on criteria in the National Rabies Management Guidelines (NRMG). Of the 194 cases for which clinicians recorded a rabies risk category, only 53% were correctly classified when compared with the NRMG. Clinicians were more likely to underestimate the risk of exposure to rabies and appeared to prescribe PEP independently of their risk classification.. Male health assistants performed the most accurate risk assessments while female health assistants performed the least accurate. Clinicians in Basic Health Units performed less accurate risk assessments compared with those in hospitals. Conclusions This study highlights important discrepancies between clinicians’ management of human cases potentially exposed to rabies and recommendations in the NRMG. In particular, clinicians were not accurately assessing rabies risk in potentially exposed cases and were not basing their PEP treatment on the basis of their risk assessment. This has significant implications for achieving the national goal of eliminating dog-mediated human rabies by 2030 and may result in unnecessary costs associated with PEP. Recommendations to improve clinician’s management of human cases potentially exposed to rabies include: reviewing and updating the NRMG, providing clinicians with regular and appropriately targeted training about rabies risk assessment and PEP prescription, and regularly reviewing clinicians’ practices.

Health concerns played a part but price was most important

Infrasound data are routinely used to detect and locate volcanic and other explosions, using both arrays and single sensor networks. However, at local distances (

Aging is associated with an increased prevalence of vascular health conditions that are linked to a disruption in the cerebral vasculature and white matter microstructural organization. In people with cardiovascular risk factors, increased cerebral arterial pulsatility is associated with poorer white matter microstructural organization and cognitive functioning. This study examines the relationship among arterial pulsatility, white matter microstructural organization, and cognitive ability in a healthy adult lifespan sample. One hundred and eighty-nine adults were divided into a younger adult (50 years, n = 92). The latter were further subdivided into two subgroups with (CV+, n = 25) and without (CV−, n = 67) cardiovascular risk factors. Arterial pulsatility was measured using cardiac-gated phase-contrast flow quantification sequence and three indexes of whole-brain white matter microstructural organization [i.e., fractional anisotropy (FA), radial diffusivity (RaD), mean diffusivity (MD)] were derived from diffusion-weighted imaging (DWI). Cognitive ability was assessed using global cognitive functioning (MoCA) and a measure of working memory [sensitivity (d′) from a 2-back task]. Neither the whole group analysis nor the younger adult group showed an association between measures of arterial pulsatility, global white matter microstructural organization, and cognition. In older adults, higher MD and RaD were associated with increased arterial pulsatility and poorer working memory performance. The indirect pathway from arterial pulsatility to working memory performance via both MD and RaD measures was significant in this group. Interestingly, a comparison of CV+ and CV− subgroups showed that this mediating relationship was only evident in older adults with at least one CV risk factor. These findings are consistent with cardiovascular risk factors as underlying arterial, white matter, and cognitive decline in cognitively normal older adults.

Abstract This study investigates phreatic eruptions at two similar volcanoes, Kawah Ijen (Indonesia) and White Island (New Zealand). By carefully processing broadband seismic signals, we reveal seismic signatures and characteristics of these eruptions. At both volcanoes, the phreatic eruptions are initiated by a very-long-period (VLP) seismic event located at shallow depths between 700 and 900 m below the crater region, and may be triggered by excitation of gas trapped behind a ductile magma carapace. The shallow hydrothermal systems respond in different ways. At Kawah Ijen, the stress change induced by VLPs directly triggers an eigenoscillation of the hyperacidic lake. This so-called seiche is characterized by long-lasting, long-period oscillations with frequencies governed by the dimensions of the crater lake. A progressive lateral rupture of a seal below the crater lake and/or fluids migrating toward the surface is seismically recorded $$\sim$$ ∼ 15 min later as high-frequency bursts superimposed to tilt signals. At White Island, the hydrothermal system later ($$\sim$$ ∼ 25 min) responds by radiating harmonic tremor at a fixed location that could be generated through eddy-shedding. These seismic signals shed light on several aspects of phreatic eruptions, their generation and timeline. They are mostly recorded at periods longer than tens of seconds further emphasizing the need to deploy broadband seismic equipment close to active volcanic activity.

Familial episodic ataxia of lambs is a congenital transient autosomal dominant disorder of newborn lambs, with varying expressivity. Affected lambs show episodes of an asymmetric ataxic gait, base-wide extensor hypertonia of the thoracic limbs and flexor hypertonia of the pelvic limbs. The aim of the study was to determine the genetic variant causing familial episodic ataxia in lambs. Using whole genome sequencing of two half-sib affected lambs, their sire, and their two normal dams, a heterozygous C>T transition at OAR10:77593415 (Oar_v3.1) in exon 1 of the fibroblast growth factor 14 (FGF14) gene (c.46C>T) was identified. The c.46C>T transition resulted in a premature stop codon at position 16 of the 247 amino acid FGF14 protein (p.Q16*). PCR and Sanger sequencing was used to genotype an additional 20 clinically affected animals, demonstrating all lambs carried the c.46C>T variant but 1 clinically more severely affected inbred lamb was homozygous (TT). A further 11 unrelated normal ewes were positionally sequenced, none of which had the variant, while in 18 lambs of unknown status born over 2 years of breeding trials six lambs were found to have the c.46C>T variant, likely clinically unidentified heterozygotes due to the variable expressivity, while 12 did not. In conclusion, familial episodic ataxia of lambs is potentially associated with a c.46C>T variant in the FGF14 gene. Further research is required into the mechanism behind the apparent recovery of lambs.

There is no treatment for the progressive neurodegenerative lysosomal storage disorder mucopolysaccharidosis type IIIA (MPS IIIA), which occurs due to a deficiency of functional N-sulfoglucosamine sulfohydrolase (SGSH), with subsequent accumulation of partially-degraded heparan sulfate and secondarily-stored compounds including GM2 and GM3 gangliosides and unesterified cholesterol. The brain is a major site of pathology and affected children exhibit progressive cognitive decline and early death. In the present study, six MPS IIIA dogs received intravenous recombinant human SGSH (rhSGSH) from birth to either 8 or 12 weeks of age (1 mg/kg, up to 5 mg), with subsequent intra-cerebrospinal fluid injection of 3 or 15 mg rhSGSH (or vehicle) on a weekly or fortnightly basis to 23 weeks of age. All dogs completed the protocol without incident, and there was no clinically-relevant cellular or humoral immune response to rhSGSH delivery. Immunohistochemistry demonstrated rhSGSH delivery to widespread regions of the brain, and tandem mass spectrometry revealed an apparent dose-dependent decrease in the relative level of a heparan sulfate-derived disaccharide, with near normalization of substrate in many brain regions at the higher dose. Secondarily-stored GM3 ganglioside and unesterified cholesterol, determined using histological methods, were also reduced in a dose-dependent manner, as was the number of activated microglia. We have demonstrated that pre-symptomatic treatment of this progressive neurodegenerative disorder via intra-cerebrospinal fluid injection of rhSGSH mediates highly significant reductions in neuropathology in this MPS IIIA model and clinical trials of this treatment approach in MPS IIIA patients are therefore indicated.

The aim of this study was to evaluate the usefulness of the screening questions in the French version of the Dementia Quality of Life (DQoL) questionnaire. To assess the psychometric properties of the French DQoL, 155 patients with mild-to-moderate dementia were recruited. Here, we compared the psychometric properties of the instrument between patients who passed the screening test (n = 109) and the whole study population (n = 155). The French DQoL version showed a good test-retest reliability at a 2-week interval (0.95 ≤ intraclass correlation coefficients ≤ 1.0), and an average internal consistency (0.58 ≤ Cronbach’s α ≤ 0.87) for the 2 study groups. Significant differences were observed in the 2 groups for 4 dimensions of the DQoL regarding dementia severity (Cornell scale), and for 3 dimensions evaluating depression (MMSE). Convergent validity with the Duke Health Profile revealed many significant correlations between dimensions not only in the 109 patients, but also in the whole study population. Our study demonstrated that patients who failed the screening procedure nonetheless seemed to be able to answer the DQoL questionnaire, the whole study group showing acceptable psychometric properties.

Effective management of water resources requires that all elements of the water balance be estimated. Groundwater recharge measurements are difficult, time consuming and expensive. In some cases a field study cannot be justified and simple empirical relationships are used to estimate recharge, and often the value chosen is simply a percentage of rainfall. This paper aims to use a database of 4386 field based estimates of recharge from 172 studies in Australia to produce simple empirical relationships that relate recharge to nationally available datasets and hence can be used to estimate recharge in data-poor areas in a scientifically defensible way. It was found that the vegetation and soil type were critical determinants in forming relationships between average annual rainfall and average annual recharge. Climate zones and surface geology (lithology) were not found to be significant determinants in the relationship between rainfall and recharge. The method used to estimate recharge had an impact upon the magnitude of the recharge estimates due to the spatial and temporal scales over which the different methods estimate recharge. Relationships have been developed here between average annual rainfall and average annual recharge for combinations of soil and vegetation type that can be used with only nationally available datasets to provide a recharge estimate. These relationships can explain 60% of the variance in recharge measurements across Australia. The uncertainty in the recharge estimated using these relationships is generally greater than an order of magnitude. This means that if these relationships are used to help determine water allocations, then the precautionary principle should limit allocations to less than about 5% of the estimated recharge. If allocations are greater than this, a more detailed site specific study is warranted.

Only few well-dated records document the evolution of Southeast Asian paleoenvironments during the Cenozoic. Here we analyse continental pollen assemblages from Late Oligocene and Miocene fossil sites of Thailand. In agreement with previous studies, palynoflora from the Oligocene suggests warm temperate forested habitats at 24–26 Ma, whereas Middle Miocene assemblages are made of thermophilous taxa. This change can be linked to the major climate reorganization that brought warmer and wetter conditions over Southeast Asia around 22 Ma. This study also provides the first submillional records from the Middle Miocene of Thailand. Thirteen samples of lignite layers from the sivaladapid-bearing Mae Moh site, dated between 13.3 and 13.1 Ma, and six samples from the hominoid-bearing Chiang Muan deposit, dated between 12.4 and 12.2 Ma, document oscillations between tropical woodlands and grasslands in northern Thailand. These pollen records likely reflect climate variations linked to insolation variations. Late Miocene palynological assemblages from Khorat, northeastern Thailand, document fluviolacustrine paleoenvironments alternatively covered by thermophilous trees and grasslands. These records show that both sivaladapids and early hominoids from Thailand have evolved in tropical environments with high variability in the vegetation cover.

Pollen data collected in Africa at high (Kuruyange, valley swamp, Burundi) and low altitude (Victoria, lake, Uganda; Ngamakala, pond, Congo) showed that after 6 ky before present (BP), pollen of deciduous trees increase their relative percentage, suggesting thus the reduction of the annual amount of precipitation and/or an increase of in the length of the dry season. Until now, pollen-climate transfer functions only investigated mean annual precipitation, due to the absence of modern pollen-assemblage analogs under diversified precipitation regimes. Hence these functions omit the potential effect of a change in precipitation seasonality modifying thus the length of the dry season. In the present study, we use an equilibrium biosphere model (i.e. BIOME3.5) to estimate the sensitivity of equatorial African vegetation, at specific sites, to such changes. Climatic scenarios, differing only in the monthly distribution of the current annual amount of precipitation, are examined at the above three locations in equatorial Africa. Soil characteristics, monthly temperatures and cloudiness are kept constant at their present-day values. Good agreement is shown between model simulations and current biomes assemblages, as inferred from pollen data. To date, the increase of the deciduous forest component in the palaeodata around 6 ky BP has been interpreted as the beginning of a drier climate period. However, our results demonstrate that a change in the seasonal distribution of precipitation could also induce the observed changes in vegetation types. This study confirms the importance of taking into account seasonal changes in the hydrological balance. Palaeoecologists can greatly benefit from the use of dynamic process based vegetation models to acccount for modification of the length of the dry season when they wish to reconstruct vegetation composition or to infer quantitative climate parameters, such as temperature and precipitation, from pollen or vegetation proxy.

Past vegetation and climate changes reconstructed using two pollen records from Lakes Maridor and Nguène, located in the coastal savannas and inland rainforest of Gabon, respectively, provide new insights into the environmental history of western equatorial African rainforests during the last 4500 cal yr BP. These pollen records indicate that the coastal savannas of western equatorial Africa did not exist during the mid-Holocene and instead the region was covered by evergreen rainforests. From ca. 4000 cal yr BP a progressive decline of inland evergreen rainforest, accompanied by the expansion of semi-deciduous rainforest, occurred synchronously with grassland colonisation in the coastal region of Gabon. The contraction of moist evergreen rainforest and the establishment of coastal savannas in Gabon suggest decreasing humidity from ca. 4000 cal yr BP. The marked reduction in evergreen rainforest and subsequent savanna expansion was followed from 2700 cal yr BP by the colonization of secondary forests dominated by the palm, Elaeis guineensis, and the shrub, Alchornea cordifolia (Euphorbiaceae). A return to wetter climatic conditions from about 1400 cal yr BP led to the renewed spread of evergreen rainforest inland, whereas a forest-savanna mosaic still persists in the coastal region. There is no evidence to suggest that the major environmental changes observed were driven by human impact.

Climate and atmospheric CO2 effects on the balance between C3 and C4 plants have received conflicting interpretations based on the analysis of carbon isotopic fractionation (δ13C) in sediments. But, climate and CO2 effects on the C3/C4 balance and δ13C signal are rarely addressed together. Here, we use a process-based model (BIOME4) to disentangle these effects. We simulated the vegetation response to climate and CO2 atmospheric concentration (pCO2) in two sites in which vegetation changed oppositely, with respect to C3 and C4 plants abundance, during the Last Glacial Maximum to Holocene transition. The C3/C4 balance and δ13C signal were primarily sensitive to temperature and CO2 atmospheric partial pressure. The simulated variations were in agreement with patterns observed in palaeorecords. Water limitation favoured C4 plants in case of large negative deviation in rainfall. Although a global parameter, pCO2 affected the δ13C signal differently from one site to the other because of its effects on the C3/C4 balance and on carbon isotopic fractionation in C3 and C4 plants. Simulated Plant functional types (PFT) also differed in their composition and response from one site to the other. The C3/C4 balance involved different competing C3 and C4 PFT, and not homogeneous C3 and C4 poles as often assumed. Process-based vegetation modelling emphasizes the need to account for multiple factors when a palaeo-δ13C signal is used to reconstruct the C3/C4 balance.

New detailed vegetation reconstructions are proposed in Atlantic Central Africa from a modern pollen data set derived from 199 sites (Cameroon, Gabon and Congo) including 131 new sites. In this study, the concept of plant functional classification is improved with new and more detailed plant functional types (PFTs) and new aggregations of pollen taxa. Using the biomisation method, we reconstructed (1) modern potential biomes and (2) potential succession stages of forest regeneration, a new approach in Atlantic Central African vegetation dynamics and ecosystem functioning reconstruction. When compared to local vegetation, potential biomes are correctly reconstructed (97.5% of the sites) and tropical rain forest (TRFO biome) is well identified from tropical seasonal forest (TSFO biome). When the potential biomes are superimposed on the White's vegetation map, only 76.4% of the sites are correctly reconstructed. But using botanical data, correspondence and cluster analyses, the 43 sites from Congo (Mayombe) evidence more affinities with those of central Gabon and so they can also be considered as correctly reconstructed as TRFO biome and White's map should be revised. In terms of potential succession stages of forest regeneration, the mature forest (TMFO) is well differentiated from the secondary forest (TSFE), but inside this latter group, the young and the pioneer stages are not clearly identified due probably to their low sampling representation. Moreover, linked to their progressive and mosaic character, the boundaries between two forest biomes or two forest stages are not clearly detected and need also a more intensive sampling in such transitions.

Batten disease (neuronal ceroid lipofuscinoses, NCLs) are a group of inherited childhood diseases that result in severe brain atrophy, blindness and seizures, leading to premature death. To date, eight different genes have been identified, each associated with a different form. Linkage analysis indicated a CLN5 form in a colony of affected New Zealand Borderdale sheep. Sequencing studies established the disease-causing mutation to be a substitution at a consensus splice site (c.571+1G>A), leading to the excision of exon 3 and a truncated putative protein. A molecular diagnostic test has been developed based on the excision of exon 3. Sequence alignments support the gene product being a soluble lysosomal protein. Western blotting of isolated storage bodies indicates the specific storage of subunit c of mitochondrial ATP synthase. This flock is being expanded as a large animal model for mechanistic studies and trial therapies.