1. Fluorovinylsulfones and -Sulfonates as Potent Covalent Reversible Inhibitors of the Trypanosomal Cysteine Protease Rhodesain: Structure-Activity Relationship, Inhibition Mechanism, Metabolism, and In Vivo Studies.
- Author
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Jung S, Fuchs N, Johe P, Wagner A, Diehl E, Yuliani T, Zimmer C, Barthels F, Zimmermann RA, Klein P, Waigel W, Meyr J, Opatz T, Tenzer S, Distler U, Räder HJ, Kersten C, Engels B, Hellmich UA, Klein J, and Schirmeister T
- Subjects
- Animals, Cysteine Endopeptidases chemistry, Cysteine Proteinase Inhibitors chemical synthesis, Cysteine Proteinase Inhibitors metabolism, Cysteine Proteinase Inhibitors toxicity, Enzyme Assays, Female, HeLa Cells, Humans, Kinetics, Male, Mice, Molecular Docking Simulation, Molecular Structure, Parasitic Sensitivity Tests, Protein Binding, Structure-Activity Relationship, Sulfones chemical synthesis, Sulfones metabolism, Sulfones toxicity, Sulfonic Acids chemical synthesis, Sulfonic Acids metabolism, Sulfonic Acids toxicity, Trypanocidal Agents chemical synthesis, Trypanocidal Agents metabolism, Trypanocidal Agents toxicity, Trypanosoma brucei brucei drug effects, Vinyl Compounds chemical synthesis, Vinyl Compounds metabolism, Vinyl Compounds toxicity, Cysteine Endopeptidases metabolism, Cysteine Proteinase Inhibitors pharmacology, Sulfones pharmacology, Sulfonic Acids pharmacology, Trypanocidal Agents pharmacology, Vinyl Compounds pharmacology
- Abstract
Rhodesain is a major cysteine protease of Trypanosoma brucei rhodesiense , a pathogen causing Human African Trypanosomiasis, and a validated drug target. Recently, we reported the development of α-halovinylsulfones as a new class of covalent reversible cysteine protease inhibitors. Here, α-fluorovinylsulfones/-sulfonates were optimized for rhodesain based on molecular modeling approaches. 2d , the most potent and selective inhibitor in the series, shows a single-digit nanomolar affinity and high selectivity toward mammalian cathepsins B and L. Enzymatic dilution assays and MS experiments indicate that 2d is a slow-tight binder ( K
i = 3 nM). Furthermore, the nonfluorinated 2d-(H) shows favorable metabolism and biodistribution by accumulation in mice brain tissue after intraperitoneal and oral administration. The highest antitrypanosomal activity was observed for inhibitors with an N-terminal 2,3-dihydrobenzo[ b ][1,4]dioxine group and a 4-Me-Phe residue in P2 ( 2e / 4e ) with nanomolar EC50 values (0.14/0.80 μM). The different mechanisms of reversible and irreversible inhibitors were explained using QM/MM calculations and MD simulations.- Published
- 2021
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