1. Microfluidic Leukocyte Isolation for Gene Expression Analysis in Critically Ill Hospitalized Patients
- Author
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Henry V. Baker, Mashkoor A. Choudhry, Ronald W. Davis, Wenzhong Xiao, H. Shaw Warren, Mehmet Toner, John A. Mannick, J. Perren Cobb, Cynthia L. Tannahill, Celeste C. Finnerty, David N. Herndon, Matthew B. Klein, Michael B. Shapiro, Iris Garcia, Daniel Irimia, George Casella, Stephen F. Lowry, Philip H. Mason, Richard L. Gamelli, Aman Russom, David G. Camp, Grant E. O'Keefe, Nicole S. Gibran, Martin G. Schwacha, Timothy R. Billiar, Douglas Hayden, Palaniappan Sethu, Amer Abouhamze, Constance Elson, Paul E. Bankey, Brian G. Harbrecht, Avery B. Nathens, William J. Hubbard, Julie Wilhelmy, Asit De, Ernest E. Moore, John D. Storey, Bradley D. Freeman, Michael N. Mindrinos, M. Cecilia Lopez, Bernard H. Brownstein, Daniel G. Remick, Tanya Logvinenko, Richard D. Smith, Bruce A. McKinley, Jureta W. Horton, Steve E. Calvano, Ronald V. Maier, Carol L. Miller-Graziano, David A. Schoenfeld, Joseph P. Minei, Grace P. McDonald-Smith, Frederick A. Moore, Michael West, Ronald G. Tompkins, Laurence G. Rahme, Irshad H. Chaudry, Jeffrey A. Johnson, Lyle L. Moldawer, James A. Lederer, and Geoffrey M. Silver
- Subjects
Critical Illness ,Gene Expression Profiling ,Biochemistry (medical) ,Clinical Biochemistry ,Microfluidics ,RNA ,Cell Separation ,Computational biology ,Microfluidic Analytical Techniques ,Biology ,Wounds, Nonpenetrating ,Isolation (microbiology) ,Article ,Hospitalization ,Gene expression profiling ,Immunology ,Gene expression ,Leukocytes ,Gene chip analysis ,Nucleic acid ,Humans ,Burns ,Oligonucleotide Array Sequence Analysis ,Whole blood - Abstract
Background: Microarray technology is becoming a powerful tool for diagnostic, therapeutic, and prognostic applications. There is at present no consensus regarding the optimal technique to isolate nucleic acids from blood leukocyte populations for subsequent expression analyses. Current collection and processing techniques pose significant challenges in the clinical setting. Here, we report the clinical validation of a novel microfluidic leukocyte nucleic acid isolation technique for gene expression analysis from critically ill, hospitalized patients that can be readily used on small volumes of blood.Methods: We processed whole blood from hospitalized patients after burn injury and severe blunt trauma according to the microfluidic and standard macroscale leukocyte isolation protocol. Side-by-side comparison of RNA quantity, quality, and genome-wide expression patterns was used to clinically validate the microfluidic technique.Results: When the microfluidic protocol was used for processing, sufficient amounts of total RNA were obtained for genome-wide expression analysis from 0.5 mL whole blood. We found that the leukocyte expression patterns from samples processed using the 2 protocols were concordant, and there was less variability introduced as a result of harvesting method than there existed between individuals.Conclusions: The novel microfluidic approach achieves leukocyte isolation in
- Published
- 2008
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