1. Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs.
- Author
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Mondeel TDGA, Ivanov O, Westerhoff HV, Liebermeister W, and Barberis M
- Subjects
- Cell Cycle physiology, Cell Cycle Checkpoints genetics, Cell Division, Cyclin B genetics, Cyclin B physiology, Cyclin-Dependent Kinases genetics, Cyclin-Dependent Kinases metabolism, Cyclins genetics, Models, Biological, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins physiology, Systems Biology methods, Biological Clocks physiology, Cyclin B metabolism, Cyclins metabolism, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Some biological networks exhibit oscillations in their components to convert stimuli to time-dependent responses. The eukaryotic cell cycle is such a case, being governed by waves of cyclin-dependent kinase (cyclin/Cdk) activities that rise and fall with specific timing and guarantee its timely occurrence. Disruption of cyclin/Cdk oscillations could result in dysfunction through reduced cell division. Therefore, it is of interest to capture properties of network designs that exhibit robust oscillations. Here we show that a minimal yeast cell cycle network is able to oscillate autonomously, and that cyclin/Cdk-mediated positive feedback loops (PFLs) and Clb3-centered regulations sustain cyclin/Cdk oscillations, in known and hypothetical network designs. We propose that Clb3-mediated coordination of cyclin/Cdk waves reconciles checkpoint and oscillatory cell cycle models. Considering the evolutionary conservation of the cyclin/Cdk network across eukaryotes, we hypothesize that functional ("healthy") phenotypes require the capacity to oscillate autonomously whereas dysfunctional (potentially "diseased") phenotypes may lack this capacity.
- Published
- 2020
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