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Fungi can adapt to environmental conditions and produce different physiological responses. The aim of this study was to verify the existence of Sclerotinia sclerotiorum temperature ecotypes in isolates from Brazil and the USA. Ten S. sclerotiorum isolates from tropical and subtropical regions of Brazil and six isolates from the USA were used to measure mycelial growth, pathogenicity and aggressiveness on bean, canola and soybean, as well as apothecial formation at contrasting temperatures. For mycelial growth, regardless of the origin, all isolates grew faster at 20°C, compared to 27°C. For pathogenicity and aggressiveness, disease severity was greater at 20°C than at 30°C considering all isolates. As regards apothecial production, only Brazilian isolates were capable of producing apothecia with no preconditioning. After preconditioning at 4°C during 40 days, isolates from Brazil and the USA produced apothecia. None of the 16 isolates was capable of producing apothecia at 30oC after 40 days. Results indicated no adaptation of S. sclerotiorum isolates from Brazil to grow or colonize leaflets at higher temperatures, compared to isolates from the USA. Only sclerotia from S. sclerotiorum isolates from Brazil were capable of germinating carpogenically without preconditioning.

Five soybean plant introductions expressed antibiosis resistance to multiple soybean aphid biotypes. Two introductions had resistance genes located in the Rag1, Rag2, and Rag3 regions; one introduction had resistance genes located in the Rag1, Rag2, and rag4 regions; one introduction had resistance genes located in the Rag1 and Rag2 regions; and one introduction had a resistance gene located in the Rag2 region. Soybean aphid (Aphis glycines Matsumura) is the most important soybean [Glycine max (L.) Merr.] insect pest in the USA. The objectives of this study were to characterize the resistance expressed in five plant introductions (PIs) to four soybean aphid biotypes, determine the mode of resistance inheritance, and identify markers associated with genes controlling resistance in these accessions. Five soybean PIs, from an initial set of 3000 PIs, were tested for resistance against soybean aphid biotypes 1, 2, 3, and 4 in choice and no-choice tests. Of these five PIs, PI 587663, PI 587677, and PI 587685 expressed antibiosis against all four biotypes, while PI 587972 and PI 594592 expressed antibiosis against biotypes 1, 2, and 3. F2 populations derived from PI 587663 and PI 587972 were evaluated for resistance against soybean aphid biotype 1, and populations derived from PIs 587677, 587685, and 594592 were tested against biotype 3. In addition, F2:3 plants were tested against biotypes 2 and 3. Genomic DNA from F2 plants was screened with markers linked to Rag1, Rag2, Rag3, and rag4 soybean aphid-resistance genes. Results showed that PI 587663 and PI 594592 each had three genes with variable gene action located in the Rag1, Rag2, and Rag3 regions. PI 587677 had three genes with variable gene action located in the Rag1, Rag2 and rag4 regions. PI 587685 had one dominant gene located in the Rag1 region and an additive gene in the Rag2 region. PI 587972 had one dominant gene located in the Rag2 region controlling antixenosis- or antibiosis-type resistance to soybean aphid biotypes 1, 2, or 3. PIs 587663, 587677, and 587685 also showed antibiosis-type resistance against biotype 4. Information on multi-biotype aphid resistance and resistance gene markers will be useful for improving soybean aphid resistance in commercial soybean cultivars.

Soybean diseases and pests can affect soybean production. One emerging pest management method is to treat plants with chemical elicitors at nontoxic levels to induce host resistance. The objective of this research was to determine if elicitors, benzothiadiazole (BTH), chitosan (CHT), phenylalanine (PHE), and salicylic acid (SA), applied to soybean foliage could alter the response of soybean genotypes to soybean pathogens. Two of the soybean genotypes had been previously shown to produce high or low amounts of reactive oxygen species (ROS) in response to elicitation. In the greenhouse, soybean genotypes were challenged with three pathogens 48 h after elicitation. Plants of the cultivar Pharaoh (susceptible control) treated with SA, and then inoculated with Macrophomina phaseolina had a shorter (α = 0.05) stem lesion length (34 mm) than the water control (55 mm). Plants of soybean genotype LD00-2817p (high capacity to produce ROS) and the cultivar Sloan treated with BTH, PHE, or SA, and then inoculated with Phytophthora sojae had greater (α = 0.05) survival rates than plants treated with the water control. The four elicitors and a water control were evaluated on LD00-2817p and LDX01-1-65 in the field for two consecutive years. Foliar disease incidence and severity were low for both years, although there were some differences in stem disease ratings. For example, charcoal rot stem severity rating was reduced (α = 0.05) from 2.0 in the water control to 1.1 with a PHE treatment for LD00-2817p and was reduced (α = 0.05) from 3.8 in the water control to 2.6 with SA for LDX01-1-65 in 2013. Both greenhouse controlled experiments and field experiments showed that genotype-specific elicitation reduced disease severity in some cases, but the differences were greater under controlled-inoculated conditions.

Soybean rust, caused by the fungus Phakopsora pachyrhizi, was detected in the continental United States in 2004. Several new sources of resistance to P. pachyrhizi have been identified in soybean (Glycine max); however, there is limited information about their resistance when challenged with additional U.S. and international isolates. Resistance of 20 soybean (G. max) entries was compared after inoculation with 10 P. pachyrhizi isolates, representing different geographic and temporal origins. Soybean entries included 2 universal susceptible cultivars, 4 sources of soybean rust resistance genes (Rpp1–4), and 4 and 10 resistant entries selected from field trials in Paraguay and Vietnam, respectively. Of the known Rpp1–4 sources of resistance, plant introduction (PI) 459025B (Rpp4) produced reddish-brown (RB) lesions in response to all of the P. pachyrhizi isolates, while PI 230970 (Rpp2) produced RB lesions to all isolates except one from Taiwan, in response to which it produced a susceptible tan (TAN) lesion. PI 200492 (Rpp1) and PI 462312 (Rpp3) produced TAN lesions in response to most P. pachyrhizi isolates. The resistant entries selected from Paraguay and Vietnam varied considerably in their responses to the 10 P. pachyrhizi isolates, with M 103 the most susceptible and GC 84058-18-4 the most resistant. The reaction patterns on these resistant entries to the P. pachyrhizi isolates were different compared with the four soybean accessions with the Rpp genes, indicating that they contain novel sources of rust resistance. Among the P. pachyrhizi isolates, TW 72-1 from Taiwan and IN 73-1 from India produced the most susceptible and resistant reactions, respectively, on the soybean entries.

Soybean resistance to Phakopsora pachyrhizi, the cause of soybean rust, has been characterized by the following three infection types: (i) immune response (IM; complete resistance) with no visible lesions, (ii) resistant reaction with reddish brown (RB) lesions (incomplete resistance), and (iii) susceptible reaction with tan-colored (TAN) lesions. Based on visual assessments of these phenotypes, single gene resistance in soybean to P. pachyrhizi has been documented, but colonization within infected tissues based on fungal DNA (FDNA) levels in different soybean genotypes had not been analyzed. The research used a quantitative polymerase chain reaction (Q-PCR) assay to compare visual disease assessment to FDNA in controlled inoculation experiments using two isolates of P. pachyrhizi. The objective of the first experiment was to compare data from digital visual disease assessment to FDNA from Q-PCR assays using digital visual disease assessment using five resistant soybean genotypes (one IM and four RB) and five susceptible genotypes (TAN). The objective of the second experiment was to quantify FDNA using Q-PCR at different time points after inoculation to determine if levels of fungal colonization differed in five soybean genotypes with different levels of resistance (one IM, two RB, and two TAN). For experiment 1, the numbers of uredinia and uredinia per lesion on four of the five resistant soybean genotypes were lower (P < 0.05) than the other six genotypes. Significant differences (P < 0.05) in FDNA concentrations were found among soybean genotypes with TAN lesions and among soybean genotypes with RB lesions. Soybean cultivar UG5 (IM phenotype) had significantly less (P < 0.05) FDNA than all of the other genotypes. Some genotypes that produced TAN lesions had significantly lower (P < 0.05) or non-significantly different FDNA concentrations compared to those genotypes that produced RB lesions. For experiment 2, the regression of FDNA on days after inoculation was significant (P < 0.01) with positive slopes for all genotypes except for UG5, in which FDNA declined over time, indicating a reduction of fungal colonization. The results of this Q-PCR FDNA screening technique demonstrates its use to distinguish different types of resistance, and could be used to facilitate the evaluation of soybean breeding populations, where precise quantification of incomplete and/or partial resistance is needed to identify and map quantitative trait loci.

With the discovery of the soybean aphid ( Aphis glycines Matsumura) as a devastating insect pest of soybean ( Glycine max (L.) Merr.) in the United States, host resistance was recognized as an important management option. However, the identification of soybean aphid isolates exhibiting strong virulence against aphid resistance genes ( Rag genes) has highlighted the need for pyramiding genes to help ensure the durability of host resistance as a control strategy. In this study, soybean isolines with all possible combinations of the resistance and susceptibility alleles at Rag1 , Rag2 , and Rag3 were evaluated for their effectiveness against the four characterized soybean aphid biotypes. All soybean isolines, including the susceptible check carrying none of the resistance alleles (S1/S2/S3), were infested with each biotype in no-choice greenhouse tests, and the aphid populations developed on each isoline were enumerated 14 d after infestation. All gene combinations, with the exception of Rag3 alone, provided excellent protection against biotype 1. Isolines with Rag2 alone or in combination with Rag1 and Rag3 had greater levels of resistance to biotype 2 than those with either Rag1 alone, Rag3 alone, or the Rag1/3 pyramid. For biotype 3, the Rag1/3 and Rag1/2/3 pyramided lines significantly reduced aphid populations compared with all other gene combinations, while the Rag1/2/3 pyramid provided the greatest protection against biotype 4. Overall, the Rag1/2/3 pyramided line conferred the greatest protection against all four biotypes.

The terms used to describe symptoms of delayed senescence in soybean often are used inconsistently or interchangeably and do not adequately distinguish the observed symptoms in the field. Various causes have been proposed to explain the development of delayed senescence symptoms. In this article, we review published reports on delayed senescence symptoms in soybean, summarize current research findings, provide examples of terms related to specific symptoms, and present an overview of the results of a multi-state survey directed to soybean growers to understand their concerns about delayed soybean senescence. Some of these terms, such as green bean syndrome and green stem syndrome, describe symptoms induced by biotic factors, while other terms describe symptoms associated with abiotic factors. Some delayed senescence terms involve the whole plant remaining green while other terms include just the stem and other plant parts such as pods. In the grower survey, 77% reported observing soybean plants or plant parts that remained green after most plants in the field were fully mature with ripe seed. Most respondents attributed these symptoms to changes in breeding and choice of cultivars. At the end of this article, we standardized the terms used to describe delayed senescence in soybean. Accepted for publication 23 March 2016. Published 15 April 2016.

A major constraint in breeding for resistance to soybean rust has been the virulence diversity in Phakopsora pachyrhizi populations. In greenhouse experiments, reactions of 18 soybean genotypes to 24 U.S. isolates from 2007 and 2008 and 4 foreign isolates were compared. Reactions of four differentials (Rpp1 to Rpp4) to these U.S. isolates were also compared with reactions to nine foreign isolates and three U.S. isolates from 2004. Principal component analysis (PCA) of the reaction types grouped the U.S. isolates into a single virulence group, whereas each of the foreign isolates had a unique virulence pattern. In another experiment, reactions of 11 differentials to the 24 U.S. isolates were compared and significant interactions (P < 0.001) were found between the isolates and host genotypes for rust severity and uredinia densities. PCA of these two measures of disease placed the 24 isolates into seven or six aggressiveness groups, respectively. In a third experiment, evaluation of 20 soybean genotypes for resistance to the previously established aggressive groups identified 10 genotypes resistant to isolates representing most of the groups. This study confirmed the pathogenic diversity in P. pachyrhizi populations and identified soybean germplasm with resistance to representative U.S. isolates that can be used in breeding.

Charcoal rot, caused by the fungal pathogen is an economically important disease on soybean and other crops including maize (L.), sorghum [ (L.) Moench], and sunflower (L.). Without effective cultural or chemical options to control charcoal rot in soybean [ (L.) Merr.], finding sources of genetic resistance is of high interest. In this study, 70 ancestral soybean genotypes were screened for resistance to using a cut-stem inoculation technique under semi-controlled greenhouse conditions. Lesion progression on the stems in the first experiment was measured 7 to 15 d after inoculation. Three follow-up experiments were conducted to select and confirm the genotypes with the strongest partial resistance. Two experiments evaluated lesion lengths and the third experiment evaluated seedling survival. In the two experiments measuring lesion lengths, PI 548302 (42 and 38 mm) and PI 548414 (36 and 52 mm) had significantly shorter lesion lengths than the moderately resistant genotype, DT97-4290 (58 and 87 mm). In the fourth experiment, percentage survival of PI 548414 (88%), PI 548302 (81%), and PI 548178 (66%) were significantly higher than survival of DT97-4290 (32%). These three genotypes may be useful as parents for developing soybean cultivars with charcoal rot resistance.

The soybean aphid, Aphis glycines Matsumura (Hemiptera: Aphididae), is one of the most destructive insect pests on soybeans in the United States. One method for managing this pest is through host plant resistance. Since its arrival in 2000, 4 aphid biotypes have been identified that are able to overcome soybean aphid resistance (Rag) genes. A soybean aphid isolate collected from Moline, Illinois readily colonized soybean plants with the soybean aphid resistance gene Rag2, unlike biotypes 1 and 2, but similar to soybean aphid biotype 3. Two no-choice experiments compared the virulence of the Moline isolate with biotype 3. In both experiments, differences in aphid population counts were not significant (P > 0.05) on soybean genotypes LD08-12957a (Rag2) and LD11-5413a (Rag2), but the aphid counts for the Moline isolate were significantly (P < 0.05) lower than the aphid counts for the biotype 3 isolate on the soybean genotypes Dowling (Rag1), LD05-16611 (Rag1), LD11-4576a (Rag1), and PI 567598B (rag1b and rag3). The Moline isolate was a variant of aphid biotype 3, which is the first report showing that soybean aphid isolates classified as the same biotype, based on virulence against specific Rag genes, can differ in aggressiveness or ability to colonize specific host genotypes.

The effects of resveratrol and pterostilbene on in vitro growth of three soybean pathogens were tested to determine whether these stilbenic compounds could potentially be targets to increase innate resistance in transgenic soybean plants. Growth of Macrophomina phaseolina, Rhizoctonia solani, and Sclerotinia sclerotiorum was measured on solid and in liquid media amended with resveratrol and pterostilbene (concentration in the media of resveratrol at 100 μg/ml and pterostilbene at 25 μg/ml). All three fungi were very sensitive to pterostilbene in potato dextrose agar (PDA), which reduced colony area of each of the three pathogens to less than half of the control 3 days after incubation. The three fungal pathogens were less sensitive to resveratrol compared with pterostilbene; however, area under the curve (AUC) calculated from colony areas measured over 3 days was significantly (P < 0.05) less than the control for S. sclerotiorum and R. solani on PDA with resveratrol or pterostilbene. AUC for M. phaseolina on PDA with pterostilbene was significantly (P < 0.05) lower than the control whereas, on PDA with resveratrol, AUC for M. phaseolina was lower than the control but the difference was nonsignificant (P > 0.05). AUC for all three fungi was significantly lower (P < 0.05) on PDA with pterostilbene than with resveratrol. In potato dextrose broth (PDB) shake cultures, AUC for all three fungi was significantly (P < 0.01) lower in pterostilbene than in the control. AUC for R. solani and S. sclerotiorum was significantly lower (P < 0.01) in resveratrol than the control, whereas AUC for M. phaseolina in resveratrol was lower, but not significantly (P > 0.05) different from the control. AUC in pterostilbene was highly significantly (P < 0.01) lower than in resveratrol for M. phaseolina and significantly (P < 0.05) lower for R. solani but the difference for S. sclerotiorum was nonsignificant (P > 0.05). There was a trend for lower mass accumulation of all three fungi in either pterostilbene or resveratrol compared with the control during the course of the experiment; however, S. sclerotiorum appeared to recover from the effects of pterostilbene between days 2 and 4. Results of biochemical analyses of the PDB over time indicated that the three fungi degraded resveratrol, with nearly 75% reduction in concentration in M. phaseolina, 80% in S. sclerotiorum, and 60% in R. solani PDB cultures by day 4 of fungal growth. M. phaseolina and S. sclerotiorum were able to resume growth after early inhibition by resveratrol after its concentration was reduced in the cultures through degradation, whereas R. solani was less efficient in resveratrol degradation and was not able to overcome its inhibitory effects on growth. The capacity to degrade pterostilbene was lowest in M. phaseolina compared with S. sclerotiorum and R. solani and the recovery of M. phaseolina cultures after initial growth inhibition by pterostilbene was minimal. The potential products of resveratrol and pterostilbene degradation by fungi were identified to be dimers and various oxidation products.

Green stem disorder of soybean (Glycine max) has increasingly become a nuisance for soybean producers. The disorder is distinguished from other manifestations of delayed plant maturity by the delayed senescence of stems only, with normal pod ripening and seed maturation. The primary objective of the first study was to determine whether green stem disorder increased with a fungicide treatment. Field cages to isolate soybean plants to prevent insect interactions were used and treatments included maturity group (MG) II insensitive and sensitive soybean cultivars with or without fungicide applications. A secondary objective was to determine fungi potentially associated with the disorder. The results indicated significant elevation of the incidence of green stem disorder when using a fungicide. Species of Diaporthe or Phomopsis and Macrophomina phaseolina were more frequent in stems without the disorder, whereas species of Colletotrichum were found mostly in stems with the disorder. In another study, field experiments were conducted without cages in replicated field plots to compare the effects of fungicides with different chemistries and timing of fungicide application on incidence of green stem disorder using green stem disorder MG II- and MG III-sensitive and insensitive soybean cultivars. There was a significant increase in percentage of green stem disorder due to fungicide application, depending on fungicide chemistry, timing of application, year, location, and cultivar sensitivity to green stem disorder. Generally, Headline and Headline-Domark applications resulted in higher incidence of green stem disorder than Domark alone or the nonsprayed control, with over 50% incidence in many cases. Higher percent green stem disorder was significantly (P < 0.05) associated with higher yields in 11 of the 28 trials. From the results of this research, soybean producers should be aware of the possible risk that fungicide application may have in increasing incidence of green stem disorder. In addition, producers can help manage green stem disorder by selecting soybean cultivars reported to be consistently insensitive to the disorder.

Charcoal rot of soybean is caused by the fungal pathogen Macrophomina phaseolina. Effective and reliable techniques to evaluate soybean for resistance to this fungus are needed to work toward a management scheme that would utilize host resistance. Three experiments were conducted to investigate the use of a cut-stem inoculation technique to evaluate soybean genotypes for resistance to M. phaseolina. The first experiment compared aggressiveness of M. phaseolina isolates collected from soybean on different soybean genotypes. Significant (P < 0.05) differences among the isolates and genotypes for relative area under disease progress curve (RAUDPC) were found without a significant isolate–genotype interaction. The second experiment compared 14 soybean genotypes inoculated with M. phaseolina in multiple trials conducted in two environments, the greenhouse and growth chamber. Significant (P < 0.05) differences among environments and highly significant (P < 0.001) differences among soybean genotypes for RAUDPC were found. The environment–genotype interaction was nonsignificant (P > 0.05). Soybean genotypes DT97-4290, DT98-7553, DT98-17554, and DT99-16864 had significantly (P < 0.05) lower RAUDPC than 7 of the 14 genotypes. The third experiment evaluated resistance in selected Phaseolus spp. and soybean genotypes. The range of RAUDPC for Phaseolus spp. was similar to that of soybean. The Phaseolus lunatus ‘Bush Baby Lima’ had significantly (P < 0.05) lower RAUDPC than P. vulgaris genotypes evaluated. The cut-stem inoculation technique, which has several advantages over field tests, successfully distinguished differences in aggressiveness among M. phaseolina isolates and relative differences among soybean genotypes for resistance to M. phaseolina comparable with results of field tests.

Aphis glycines Matsumura, the soybean aphid, first arrived in North America in 2000 and has since become the most important insect pest of domestic soybean, causing significant yield loss and increasing production costs annually in many parts of the USA soybean belt. Research to identify sources of resistance to the pest began shortly after it was found and several sources were quickly identified in the USDA soybean germplasm collection. Characterization of resistance expression and mapping of resistance genes in resistant germplasm accessions resulted in the identification of six named soybean aphid resistance genes: Rag1, rag1c, Rag2, Rag3, rag4, and Rag5 (proposed). Simple sequence repeat markers flanking the resistance genes were identified, facilitating efforts to use marker-assisted selection to develop resistant commercial cultivars. Saturation or fine-mapping with single nucleotide polymorphism markers narrowed the genomic regions containing Rag1 and Rag2 genes. Two potential NBS-LRR candidate genes for Rag1 and one NBS-LRR gene for Rag2 were found within the regions. Years before the release of the first resistant soybean cultivar with Rag1 in 2009, a soybean aphid biotype, named biotype 2, was found that could overcome the resistance gene. Later in 2010, biotype 3 was characterized for its ability to colonize plants with Rag2 and other resistance genes. At present, three biotypes have been reported that can be distinguished by their virulence on Rag1 and Rag2 resistance genes. Frequency and geographic distribution of soybean aphid biotypes are unknown. Research is in progress to determine the inheritance of virulence and develop DNA markers tagging virulence genes to facilitate monitoring of biotypes. With these research findings and the availability of host lines with different resistance genes and biotypes, the soybean aphid-soybean pest-host system has become an important model system for advanced research into the interaction of an aphid with its plant host, and also the tritrophic interaction that includes aphid endosymbionts.

Soybean rust, caused by Phakopsora pachyrhizi Syd., is a major disease limiting soybean [ Glycine max (L.) Merr.] production in many areas of the world. Yield losses of up to 80% have been reported in experimental plots in Taiwan. Although the disease is not always yield limiting, it has the potential under conducive conditions to cause major losses in most soybean-producing countries in the world. The threat of P. pachyrhizi to soybean production in the Western Hemisphere began in Paraguay in 2001, where the disease was found in a limited number of soybean fields in the Parana River basin bordering Brazil. Later, in 2004, P. pachyrhizi was found in the continental USA. There are approximately 150 species in 53 genera the family Fabaceae known to be hosts of P. pachyrhizi . Approximately 120 of the known hosts occur in North and Central America and could become important in the epidemiology of the disease, serving as a bridge or over-wintering host between soybean crops. The interaction between soybean genotypes and P. pachyrhizi isolates appears to follow gene-for-gene theory, with resistance genes controlling resistance to specific pathotypes. In addition to soybean, pathotype-specific resistance has also been found in a number of perennial Glycine species. Dominant genes controlling pathotype-specific resistance to soybean rust have been identified and mapped to five loci in the soybean genome, with multiple alleles at four loci. Many of the resistance genes have become ineffective over time in different geographic areas following their deployment into soybean production. The search for more durable soybean rust resistance will include research on non-host and/or engineered resistance.

Macrophomina phaseolina is the cause of charcoal rot of soybean (Glycine max). Resistance to M. phaseolina in commercial soybean cultivars is not common but is needed in locations where the disease is chronic and severe. The objective of this study was to develop a reliable method to produce sufficient M. phaseolina conidia that can be used to inoculate soybean plants in a high-throughput resistance-screening program. Production of pycnidia is not common on most culture media, such as potato dextrose agar, but can be produced on media containing plant parts or oilseed extracts. Seven semi-defined media were tested to induce pycnidia production. Results indicated that the number of pycnidia that were produced by eight M. phaseolina isolates was dependent on induction medium; however, peanut butter extract-saturated filter paper placed over soynut butter extract agar (PESEA) allowed for greater pycnidia and conidia production than the other media tested. Production of pycnidia on PESEA ranged from 269 to 1,082 per plate. There were no differences among isolates in germination of conidia produced on PESEA, which averaged 83 ± 2% germination. A conidial suspension from one M. phaseolina isolate produced on PESEA and inoculated onto soybean radicles significantly distinguished (P < 0.01) ‘DT97-4290’, a soybean genotype with partial resistance to charcoal rot, from a susceptible genotype, ‘LS98-0358’. Results of this study indicated that multiple isolates of M. phaseolina from soybean produced sufficient amounts of conidia on PESEA to use as inoculum. This conidia inoculum production method will facilitate soybean charcoal rot resistance screening evaluation with different soybean isolates.

Plants recognize invading pathogens and respond biochemically to prevent invasion or inhibit colonization in plant cells. Enhancing this response in crop plants could improve sustainable methods to manage plant diseases. To enhance disease resistance in soybean, the soybean phytoalexin glyceollin was assessed in soybean hairy roots of two soybean genotypes, Spencer and PI 567374, transformed with either soybean isoflavone synthase (IFS2) or chalcone synthase (CHS6) genes that were inoculated with the soybean pathogens Diaporthe phaseolorum var. meridionales, Macrophomina phaseolina, Sclerotinia sclerotiorum, and Phytophthora sojae. The hairy-root-transformed lines had several-fold decreased levels of isoflavone daidzein, the precursor of glyceollin, and considerably lower concentrations of glyceollin induced by pathogens measured 5 days after fungal inoculation compared with the nontransformed controls without phenolic transgenes. M. phaseolina, P. sojae, and S. sclerotiorum grew much more on IFS2- and CHS6-transformed roots than on control roots, although there was no significant difference in growth of D. phaseolorum var. meridionales on the transformed hairy-root lines. In addition, glyceollin concentration was lower in D. phaseolorum var. meridionales-inoculated transformed and control roots than roots inoculated with the other pathogens. Glyceollin inhibited the growth of D. phaseolorum var. meridionales, M. phaseolina, P. sojae, S. sclerotiorum, and three additional soybean pathogens: Cercospora sojina, Phialophora gregata, and Rhizoctonia solani. The most common product of glyceollin conversion or degradation by the pathogens, with the exception of P. sojae, which had no glyceollin degradation products found in the culture medium, was 7-hydroxyglyceollin.

Soybean rust, caused by Phakopsora pachyrhizi Sydow, is a severe foliar disease of soybean [ Glycine max (L.) Merr.] that occurs throughout most soybean producing regions of the world. The objective of this research was to evaluate selected soybean genotypes for resistance to soybean rust in Vietnam. Five field experiments in Vietnam were completed from 2006 to 2009. The area-under-the-disease-progress-curve (AUDPC) was calculated for each soybean genotype based on four disease assessments taken during the reproductive growth stages. AUDPC units among soybean genotypes in each experiment differed ( P Rpp1-5 ) did not always have low AUDPC units in each experiment, although PI 230970 ( Rpp2 ) appeared to be more stable. A few genotypes with non-characterized genes for resistance, such as PI 398998, PI 437323, and PI 549017, had the lowest AUDPC units in at least one of the experiments. These genetic resources may be useful for host plant resistance studies and breeding soybeans for rust resistance in Vietnam and other locations like Brazil and the United States that have more recently been inundated with soybean rust. A significant ( P

The soybean aphid (Aphis glycines Matsumura) is an important soybean [Glycine max (L.) Merr.] pest in North America. The dominant aphid resistance gene Rag1 was previously mapped from the cultivar 'Dowling' to a 12 cM marker interval on soybean chromosome 7 (formerly linkage group M). The development of additional genetic markers mapping closer to Rag1 was needed to accurately position the gene to improve the effectiveness of marker-assisted selection (MAS) and to eventually clone it. The objectives of this study were to identify single nucleotide polymorphisms (SNPs) near Rag1 and to position these SNPs relative to Rag1. To generate a fine map of the Rag1 interval, 824 BC(4)F(2) and 1,000 BC(4)F(3) plants segregating for the gene were screened with markers flanking Rag1. Plants with recombination events close to the gene were tested with SNPs identified in previous studies along with new SNPs identified from the preliminary Williams 82 draft soybean genome shotgun sequence using direct re-sequencing and gene-scanning melt-curve analysis. Progeny of these recombinant plants were evaluated for aphid resistance. These efforts resulted in the mapping of Rag1 between the two SNP markers 46169.7 and 21A, which corresponds to a physical distance on the Williams 82 8x draft assembly (Glyma1.01) of 115 kilobase pair (kb). Several candidate genes for Rag1 are present within the 115-kb interval. The markers identified in this study that are closely linked to Rag1 will be a useful resource in MAS for this important aphid resistance gene.

The soybean aphid (Aphis glycines Matsumura) is a major soybean (Glycine max (L.) Merr.) insect pest. Soybean plant introduction (PI) 200538 has strong resistance to the aphid. The objectives of our research were to determine the inheritance of resistance and to map gene(s) controlling resis- tance in PI 200538. F 2 populations developed from crosses between PI 200538 and three sus- ceptible genotypes were tested for resistance and with DNA markers. F 2 plants from the cross 'Ina' × PI 200538 segregated 114 resistant to 37 susceptible and F 2 plants from the cross 'Wil- liams 82' × PI 200538 segregated 203 resistant to 65 susceptible when tested for resistance to soybean aphid biotype 1. F 2 plants from the cross LD02-4485 × PI 200538 segregated 167 resistant to 62 susceptible when tested for resistance to biotype 2. These populations fi t a 3:1 genetic ratio (P = 0.89, 0.78, and 0.52, respectively) with resistance dominant over sus- ceptibility. Segregation among F 2:3 families from the crosses supported the dominant resistance gene hypothesis. The gene mapped to soybean linkage group F, fl anked by the simple sequence repeat marker loci Satt510, Soyhsp176, Satt114, and Sct_033, located in the same region as the aphid resistance gene Rag2. Since the resis- tance gene in PI 200538 also gave resistance to soybean aphid biotypes 1 and 2, it is pos- sible that the gene is Rag2 and not a new aphid resistance gene. Therefore, PI 200538 may be an additional source of Rag2.

Food security is highly dependent on many factors, including biological, climate-related, and political factors. Since shortly after Mendel showed that phenotypic traits could be inherited through hybridization, scientists have been using classical genetics to increase crop production. Part of the increase in crop production has been the result of increased resistance to biotic constraints. Without this effort, losses due to pathogens and pests would be catastrophic in our most important food crops. This chapter highlights some of those success stories where major resistance genes singly or in gene pyramids have been used to reduce losses due to pathogens and pests. In addition, the use of transgenic plants that express exogenous genes controlling resistance, and the use of biological or chemical products that induce host resistance, are reviewed.

The soybean aphid [Aphis glycines Matsumura] is an important pest of soybean [Glycine max (L.) Merr.] in North America. Single dominant genes in the cultivars ‘Dowling’ and ‘Jackson’ control resistance to the soybean aphid. The gene in Dowling was named Rag1, and the genetic relationship between Rag1 and the gene in Jackson is not known. The objectives of this study were to map the locations of Rag1 and the Jackson gene onto the soybean genetic map. Segregation of aphid resistance and simple sequence repeat (SSR) markers in F 2:3 populations developed from crosses between Dowling and the two susceptible soybean cultivars ‘Loda’ and ‘Williams 82’, and between Jackson and Loda, were analyzed. Both Rag1 and the Jackson gene segregated 1:2:1 in the F 2:3 populations and mapped to soybean linkage group M between the markers Satt435 and Satt463. Rag1 mapped 4.2 cM from Satt435 and 7.9 cM from Satt463. The Jackson gene mapped 2.1 cM from Satt435 and 8.2 cM from Satt463. Further tests to determine genetic allelism between Rag1 and the Jackson gene are in progress. The SSR markers flanking these resistance genes are being used in marker-assisted selection for aphid resistance in soybean breeding programs.

Soybean mosaic virus (SMV) is one of the most common soybean viruses worldwide. The resistance or susceptibility of most commercial soybean cultivars to SMV is not known. The objectives of this study were to evaluate resistance to SMV strains G1 and G5 of current soybean cultivars, isogenic lines with different Rsv genes and alleles in ‘Williams’ or ‘Williams 82’ background, and selected soybean lines with reported or observed SMV resistance. Commercial and precommercial soybean cultivars were screened for resistance to SMV strains G1 and G5. Based on multiple tests, 1.5% and 6.7% of the 850 cultivars were resistant to SMV-G1 and SMV-G5, respectively. No cultivars were resistant to both strains. Expression of different SMV resistance genes in Williams isogenic lines inoculated with both SMV strains indicated that lines with Rsv1-y from ‘Dorman’, or unnamed resistance genes from ‘Kosamame’, and ‘Sodendaizu’, were resistant to G1 and susceptible to G5. Lines with Rsv1 alleles from PI 96983, ‘Marshall’, or ‘Ogden’ were resistant to both strains, and lines with Rsv1 alleles from ‘Raiden’, ‘SS 74185’ (PI486355), or ‘Suweon 97’ were resistant to G1 and produced a systemic necrosis reaction with G5. Lines with Rsv3-h from ‘Hardee’ were susceptible to G1 and resistant to G5. Isogenic lines with SMV resistance genes from ‘Buffalo’ showed either a resistant–resistant or resistant–susceptible reaction to the two SMV strains, suggesting the presence of more than one SMV resistance gene. Ten selected lines with reported or observed resistance to SMV were inoculated with the two SMVstrains. Some lineswereresistant to either G1 or G5, and some were resistant to both strains.

Phytophthora root rot, caused by Phytophthora sojae Kaufmann and Gerdeman, primarily attacks the roots of soybean [Glycine max (L.) Merr.] plants. Partial resistance and field tolerance in 14 commercial glyphosate [N-(phosphonomethyl)glycine] tolerant soybean cultivars with the Rpslk resistance gene were studied. Partial resistance to compatible P. sojae races 28 and 30 was evaluated by the agar layer technique. Relative to the percentage of the control, all of the commercial cultivars with the Rpslk had reductions in top mass and plant height that were not significantly different from the partial resistant check 'Conrad' that had 83% top mass and 77% plant height reduction; two of the 14 commercial cultivars had significantly lower root mass (28 and 31% lower) than Conrad (84%). In addition, there was no significant difference in disease ratings (root or whole plant) of the 14 commercial cultivars with the Rpslk compared with Conrad. Field tolerance, studied in six field experiments at Urbana, IL, during 2002-2004, was identified when there were no significant differences between the yield of inoculated treatments with or without mefenoxam [methyl N-(methoxyacetyl)-N-(2,6-xyly)-D-alaninate] fungicide seed treatment or between inoculated and noninoculated treatments. There were no significant cultivar × inoculation × fungicide treatment interactions found in any of the field experiments, and a significant cultivar × inoculation treatment interaction was found in only one field experiment. Therefore, most of the cultivars appeared to be tolerant to P. sojae. It should be noted that field tolerance was not distinguished from partial resistance in the field component of this study.

The soybean aphid (Aphis glycines Matsumura), a new pest of soybean [Glycine max (L.) Merr.], rapidly spread throughout North America after its arrival in 2000 and caused millions of dollars in economic losses. At present, the application of insecticides is the only means to control the soybean aphid. However, genetic resistance to the aphid was recently discovered in soybean germplasm and the soybean cultivar Dowling was identified as having strong antibiosis-type aphid resistance. The objective of this study was to determine the inheritance of resistance to the soybean aphid in Dowling. Resistance in F1 ,F 2, and F2–derived F3 (F2:3) families from crosses between Dowling and the two susceptible soybean cultivars Loda and Williams 82 was analyzed. All F1 plants were resistant to the aphid. Heterogeneity of segregation of F2 plants in 14 Dowling 3 Loda F2 families was nonsignificant (P 5 0.16), and pooled F2 data, with 132 resistant to 45 susceptible plants, fit a 3:1 ratio (P 5 0.90). F2 plants from Dowling 3 Williams 82 segregated 135 resistant to 44 susceptible, also fitting a 3:1 ratio (P 5 0.89). Segregation among the F2:3 families fit a 1:2:1 monogenic inheritance pattern. These results indicated that a single dominant gene named Rag1 controlled resistance in Dowling. The monogenic dominant nature of resistance will enable breeders to rapidly convert existing susceptible cultivars to resistant cultivars using backcrossing procedures.

Green stem disorder of soybean (Glycine max) is characterized by delayed senescence of stems with normal pod ripening and seed maturation. Three different field research approaches were designed to determine the relationship of green stem disorder to Bean pod mottle virus (BPMV) and other potential factors that may be involved in causing this disorder. The first research approach surveyed green stem disorder and BPMV in individual plants monitored in several commercial soybean fields during three growing seasons. Leaf samples from maturing plants (growth stage R6) were tested by enzyme-linked immunosorbent assay (ELISA) for BPMV. The percentage of monitored plants infected with BPMV at growth stage R6 in some fields was higher than the incidence of green stem disorder at harvest maturity. Many plants infected with BPMV did not develop green stem disorder, and conversely, many plants that had green stem disorder were not infected with BPMV. According to a chi-square test of independence, the data indicated that green stem disorder was independent of BPMV infection at growth stage R6 (P = 0.98). A second research approach compared green stem disorder incidence in an identical set of soybean entries planted in two locations with different levels of natural virus infection. Despite differences in virus infection, including BPMV incidence, 20 of 24 entries had similar green stem disorder incidence at the two locations. A third research approach completed over two growing seasons in field cages showed that green stem disorder developed without BPMV infection. BPMV infection did not increase green stem disorder incidence in comparison to controls. Bean leaf beetle, leaf hopper, or stinkbug feeding did not have an effect on the incidence of green stem disorder. The cause of the green stem disorder remains unknown.

Green stem is a disorder of soybean [Glycine max (L.) Merrill] that causes the stems to remain green, nonsenescent, and moist, although pods and seeds are fully ripe and dry. The disorder is a nuisance for producers because it complicates harvesting of soybeans by significantly increasing the difficulty in cutting the affected plants during harvest. The cause of the disorder is unknown; however, differences in relative sensitivity to the disorder have been observed. The primary objective of this research was to evaluate the relative sensitivity among commercial or near-commercial cultivars from private and public soybean breeding organizations in replicated variety tests in Illinois. In 31 tests at Dekalb, Monmouth, and Urbana, IL, during 2001 to 2004, 1187 different MG I (maturity group)-MG IV conventional and glyphosate[N-(phosphonomethyl)glycine]-tolerant, cultivars were visually evaluated. There were significant differences in sensitivity among cultivars in 29 of the 31 tests, indicating that genetic variability among cultivars for green stem sensitivity exists. This variability may provide a basis for breeding for low sensitivity to the green stem disorder. Total levels of green stem disorder incidence varied over years and locations. Herbicide management systems did not appear to affect the levels of green stem incidence.

Merr.] lines were screened for resistance to Bean pod mottle virus (BPMV), Soybean mosaic virus (SMV) strains G1 and G5, Tobacco that occurs in all soybean production areas of the world ringspot virus (TRSV), and Tobacco streak virus (TSV). Seven an- (Hill, 1999). Leaves of SMV-infected plants often apcestors, ‘CNS’, ‘Haberlandt’, ‘Ogden’, ‘Peking’, PI 71506, PI 88788, pear mottled and distorted, and yield losses of 8 to 35% and ‘Tokyo’, were resistant to SMV-G1. Sixteen entries, ‘A.K. (Har- have been reported (Hill, 1999; Quinones et al., 1971; row)’, ‘Capital’, CNS, FC 33243, Haberlandt, ‘Illini’, ‘Improved Peli- Ross, 1968). Cho and Goodman (1979) defined SMV can’, ‘Laredo’, ‘Lincoln’, ‘Mandarin’, ‘Mandarin (Ottawa)’, Ogden, strains G1 through G7 using reactions on a set of soy‘Palmetto’, Peking, PI 88788, and Tokyo were resistant to SMV-G5. bean differentials. Soybean mosaic virus strain G1 was All ancestral lines tested were susceptible to BPMV and TRSV. Only the most common strain identified when 98 SMV isoone ancestor, ‘Tanner’, was resistant to TSV. On the basis of cultivar lates were tested from a worldwide seed collection (Cho registration articles through 2002, there were 15 public soybean cultiand Goodman 1979), and it has been shown to have a vars with reported resistance to SMV. The possible donors of resistance for each were identified. Two soybean ancestors, CNS and high rate of seed transmission (Bowers and Goodman, Ogden, were the most important possible sources of SMV resistance 1991).SoybeanmosaicvirusG5hasbeenshowntocause genes in U.S. commercial soybean cultivars, as the pedigree of 75 and severe reduction in weight of infected plants and seed 56% of the reported resistant cultivars contained CNS and Ogden, yields(Tu,1989).Allstrains,includingG1andG5,cause respectively. In most of the cultivar registration articles, reactions to seed mottling (Bowers and Goodman, 1991). SMV were not reported. With the relatively high frequency of SMV Tobacco ringspot virus was first described in the USA resistance in major ancestral lines, SMV resistance in U.S. cultivars in 1941 (Samson, 1942). Bud blight is the most severe may be more common than expected. symptom of TRSV infection in soybean, but vein necrosis, flower and pod abortion, and stunting also can be

The soybean aphid, Aphis glycines Matsumura, is a new pest of soybean, Glycine max (L.) Merr., in North America. It has become widespread on soybean in North America since it was first identified in the Midwest in 2000. Species of Rhamnus L. (buckthorn) are the primary hosts of A. glycines, and soybean is known as a secondary host. There is limited information about the secondary host range of A. glycines. Aphid colonization on various legume hosts was compared in choice experiments. Aphid colonization occurred on species in the genus Glycine Wild. No colonization occurred on Lablab purpureus (L.) Sweet, Lens culinaris Medik, Phaseolus vulgaris L., Pisum sativum L., or species of Vicia L. and Vigna Savi. Colonization was limited or aphids were transient on species of Medicago L., Phaseolus L., and Trifolium L. There were significant differences in aphid colonization among Medicago truncatula accessions with numbers ranging from 7 to 97 aphids per plant. Six Glycine soja Sieb. & Zucc. accessions were as resistant as G. max accessions to A. glycines; these may represent novel sources of A. glycines resistance not found in G. max. Antibiosis was found to play a large role in the expression of resistance in three of the G. soja accessions. Results of this study indicated that G. max and G. soja were the best secondary hosts of A. glycines; however, its secondary host range may include other leguminous species. Therefore, A. glycines did not seem to have a highly restricted monophagous secondary host range.

With an efficient greenhouse screening method, the first resistance to the soybean aphid (Aphis glycines Matsumura) was found in cultivated soybean [Glycine max (L.) Merr.] germplasm. No resistance was found in 1425 current North American soybean cultivars, 106 Maturity Group (MG) 000 through VII Asian cultivars, and in a set of 11 ‘Clark’ isolines possessing different pubescence traits. Dense pubescence did not provide protection against the soybean aphid. Resistance was discovered and established in three ancestors of North American genotypes: ‘Dowling’, ‘Jackson’, and PI 71506. Expression of resistance in those genotypes was characterized in choice and nonchoice tests. In choice tests, significantly fewer aphids occurred on Dowling, Jackson, and PI 71506 plants compared with susceptible cultivars (P = 0.05). Aphid populations did not develop on Dowling and Jackson in nonchoice tests, indicating that there was a negative impact on aphid fecundity on those cultivars. That evidence combined with observations of aphid mortality on those cultivars suggested that antibiosis-type resistance contributed to the expression of resistance. Possible donors of resistance to Dowling and Jackson were identified. In nonchoice tests, population development on PI 71506 was not significantly different from development on susceptible cultivars, indicating that antixenosis was more important in that genotype. Resistance was expressed in all plant stages. Dowling provided season-long protection against aphids equal to the use of the systemic insecticide imidacloprid {1-[(6-Chloro-3-pyridinyl)methyl]-N-nitro-2-imidazolidinimine} in a field test. Four other germplasm accessions, ‘Sugao Zarai’, ‘Sato’, ‘T260H’, and PI 230977, had levels of resistance not significantly different from Dowling, Jackson, and PI 71506 in a choice test (P = 0.05).

Soybean seed coat mottling often has been a problematic symptom for soybean growers and the soybean industry. The percentages of seed in eight soybean lines with seed coat mottling were evaluated at harvest after inoculating plants during the growing season with Bean pod mottle virus (BPMV), Soybean mosaic virus (SMV), and both viruses inside an insect-proof cage in the field. Results from experiments conducted over 2 years indicated that plants infected with BPMV and SMV, alone or in combination, produced seed coat mottling, whereas noninoculated plants produced little or no mottled seed. BPMV and SMV inoculated on the same plants did not always result in higher percentages of mottled seed compared with BPMV or SMV alone. There was significant virus, line, and virus-line interaction for seed coat mottling. The non-seed-coat-mottling gene (Im) in Williams isoline L77-5632 provided limited, if any, protection against mottling caused by SMV and none against BPMV. The Peanut mottle virus resistance gene Rpv1 in Williams isoline L85-2308 did not give any protection against mottling caused by SMV, whereas the SMV resistance gene Rsv1 in Williams isoline L78-379 and the resistance gene or genes in the small-seeded line L97-946 gave high levels of protection against mottling caused by SMV. The correlations (r = 0.77 for year 2000 and r = 0.89 for year 2001) between virus infection of the parent plant and seed coat mottling were significant (P = 0.01), indicating that virus infection of plants caused seed coat mottling.

Inadequate plant nutrition and biotic stress are key threats to current and future crop yields. Zinc (Zn) deficiency and toxicity in major crop plants have been documented, but there is limited information on how pathogen and pest damage may be affected by differing plant Zn levels. In our study, we used soybean plants as a host, a soybean pest, and three soybean pathogens to determine whether plant Zn levels change pest and disease assessments. Two soybean cultivars were grown in sand culture with a soluble nutrient solution that ranged from Zn-deficient to toxic. Detached leaves from these plants were either inoculated with Aphis glycines, the soybean aphid, Xanthomonas axonopodis pv. glycines, a bacterium that causes bacterial pustule, Sclerotinia sclerotiorum, the necrotrophic fungus responsible for stem rot, or Phakopsora pachyrhizi, a biotrophic obligate pathogen that causes soybean rust. There were significant (P < 5%) effects on aphid colonization, positive counts for bacterial pustule, S. sclerotiorum leaf area affected, and numbers of rust lesions associated with the Zn treatments. Plants grown with the physiologically optimal levels of Zn (2 μM) had less (P < 5%) soybean aphids cm-2 leaflet than plants grown without Zn, at 0.1× Zn (0.2 μM), or at 100× Zn fertilization (200 μM). Plants grown with the normal fertilization of Zn or 100× Zn had fewer (P < 5%) positive counts for bacterial pustule and less lesion area affected by S. sclerotiorum than plants grown without Zn or fertilized with 0.1× Zn. For soybean rust, plants grown with the physiologically optimal fertilization of Zn or 100× Zn had higher (P < 5%) lesions cm-2 on leaflets from plants grown without Zn or fertilized with 0.1× Zn. These results indicate different Zn nutrition levels in soybean significantly affected aphid and disease development.

The soybean aphid, Aphis glycines Matsumura (Hemiptera: Aphididae), is one of the most destructive insect pests on soybeans in the United States. One method for managing this pest is through host plant resistance. Since its arrival in 2000, 4 aphid biotypes have been identified that are able to overcome soybean aphid resistance (Rag) genes. A soybean aphid isolate collected from Moline, Illinois readily colonized soybean plants with the soybean aphid resistance gene Rag2, unlike biotypes 1 and 2, but similar to soybean aphid biotype 3. Two no-choice experiments compared the virulence of the Moline isolate with biotype 3. In both experiments, differences in aphid population counts were not significant (P 0.05) on soybean genotypes LD08-12957a (Rag2) and LD11-5413a (Rag2), but the aphid counts for the Moline isolate were significantly (P 0.05) lower than the aphid counts for the biotype 3 isolate on the soybean genotypes Dowling (Rag1), LD05-16611 (Rag1), LD11-4576a (Rag1), and PI 567598B (rag1b and rag3). The Moline isolate was a variant of aphid biotype 3, which is the first report showing that soybean aphid isolates classified as the same biotype, based on virulence against specific Rag genes, can differ in aggressiveness or ability to colonize specific host genotypes.

Soybean [Glycine max (L.) Merr.] continues to be plagued by the soybean aphid (Aphis glycines Matsumura: SA) in North America. New soybean resistance sources are needed to combat the four identified SA biotypes. The objectives of this study were to determine the inheritance of SA resistance in PI 587732 and to map resistance gene(s). For this study, 323 F2 and 214 F3 plants developed from crossing PI 587732 to two susceptible genotypes were challenged with three SA biotypes and evaluated with genetic markers. Choice tests showed that resistance to SA Biotype 1 in the first F2 population was controlled by a gene in the Rag1 region on chromosome 7, while resistance to SA Biotype 2 in the second population was controlled by a gene in the Rag2 region on chromosome 13. When 134 F3 plants segregating in both the Rag1 and Rag2 regions were tested with a 1:1 mixture of SA Biotypes 1 and 2, the Rag2 region and an interaction between the Rag1 and Rag2 regions were significantly associated with the resistance. Based on the results of the non-choice tests, the resistance gene in the Rag1 region in PI 587732 may be a different allele or gene from Rag1 from Dowling because the PI 587732 gene showed antibiosis type resistance to SA Biotype 2 while Rag1 from Dowling did not. The two SA resistance loci and genetic marker information from this study will be useful in increasing diversity of SA resistance sources and marker-assisted selection for soybean breeding programs.

Soybean rust, caused by the fungus Phakopsora pachyrhizi, is an economically important disease of soybean with potential to cause severe epidemics resulting in significant yield losses. Host resistance is one of the management tools to control this disease. This study compared soybean genotypes exhibiting immunity, complete and incomplete resistance, and susceptibility to an isolate of P. pachyrhizi based on visual assessment of reaction type, other visual traits such as sporulation, quantitative measurements of the amount of fungal DNA (FDNA) present in leaf tissues, and data on infection and colonization levels. Soybean genotype UG5 (immune), and plant introduction (PI) 567102B and PI 567104B (complete resistance) had lower quantities of uredinia and FDNA than four other genotypes with incomplete resistance. Based on microscopic observations, early events of spore germination, appressorium formation, and fungal penetration of the epidermis occurred within 24 h postinoculation and were similar among the tested soybean genotypes. Differences in infection among the genotypes were evident once the hyphae penetrated into the intercellular spaces between the mesophyll cells. At 2 days after inoculation (dai), soybean genotype Williams 82 had a significantly (P < 0.05) higher percentage of hyphae in the mesophyll tissue than other soybean genotypes, with UG5 having significantly (P < 0.05) lower percentages than all of the other soybean genotypes at 3, 4, and 5 dai. The percentage of interaction sites with mesophyll cell death was significantly (P < 0.05) higher in UG5 than other genotypes at 3, 4, and 5 dai. There was a significant positive correlation (r = 0.30, P < 0.001) between quantities of hyphae in the mesophyll cells and FDNA. These results demonstrated that incompatible soybean–P. pachyrhizi interaction results in restricted hyphal development in mesophyll cell tissue, likely due to hypersensitive apoptosis.

The response of soybean transgenic plants, with suppressed synthesis of isoflavones, and nontransgenic plants to two common soybean pathogens, Macrophomina phaseolina and Phytophthora sojae, was studied. Transgenic soybean plants of one line used in this study were previously generated via bombardment of embryogenic cultures with the phenylalanine ammonia lyase, chalcone synthase, and isoflavone synthase (IFS2) genes in sense orientation driven by the cotyledon-preferable lectin promoter (to turn genes on in cotyledons), while plants of another line were newly produced using the IFS2 gene in sense orientation driven by the Cassava vein mosaic virus constitutive promoter (to turn genes on in all plant parts). Nearly complete inhibition of isoflavone synthesis was found in the cotyledons of young seedlings of transgenic plants transformed with the IFS2 transgene driven by the cotyledon-preferable lectin promoter compared with the untransformed control during the 10-day observation period, with the precursors of isoflavone synthesis being accumulated in the cotyledons of transgenic plants. These results indicated that the lectin promoter could be active not only during seed development but also during seed germination. Downregulation of isoflavone synthesis only in the seed or in the whole soybean plant caused a strong inhibition of the pathogen-inducible glyceollin in cotyledons after inoculation with P. sojae, which resulted in increased susceptibility of the cotyledons of both transgenic lines to this pathogen compared with inoculated cotyledons of untransformed plants. When stems were inoculated with M. phaseolina, suppression of glyceollin synthesis was found only in stems of transgenic plants expressing the transgene driven by a constitutive promoter, which developed more severe infection. These results provide further evidence that rapid glyceollin accumulation during infection contributes to the innate soybean defense response.

Shortly after its arrival, the soybean aphid, Aphis glycines Matsumura (Hemiptera: Aphididae), became established as the most important insect pest of soybean, Glycine max L. (Merr.), in the northern part of the North American soybean production region. Soybean resistance is an environmentally sustainable method to manage the pest and new soybean aphid resistant cultivars are beginning to be deployed into production. However, an earlier study identifying a soybean aphid biotype that could colonize plants with the Rag1 resistance gene has raised concerns about the durability of soybean aphid resistance genes. Choice and nonchoice tests conducted in this study characterized the colonization of a soybean aphid isolate, collected from the overwintering host Frangula alnus P. Mill in Springfield Fen, IN, on different aphid resistant soybean genotypes. This isolate readily colonized plants with the Rag2 resistance gene, distinguishing it from the two biotypes previously characterized and indicating that it represented a new biotype named biotype 3. The identification of soybean aphid biotypes that can overcome Rag1 and Rag2 resistance, even before soybean cultivars with the resistance genes have been deployed in production, suggests that there is high variability in virulence within soybean aphid populations present in North America. Such variability in virulence gives the pest a high potential to adapt to and reduce the effective life of resistance genes deployed in production. The search for new soybean aphid resistance genes must, therefore, continue, along with the development of alternative sustainable strategies to manage the pest.

This chapter discusses the early season diseases - seed decay (Phomopsis longicolla), damping-off (Rhizoctonia solani and Pythium), root and stem rot (Phytophthora sojae); mid-season diseases - bacterial pustule (Xanthomonas axonopodis pv. glycines), viral diseases (Bean pod mottle virus BPMV and Soybean mosaic virus SMV), Sclerotinia stem rot (Sclerotinia sclerotiorum), Frogeye leaf spot (Cercospora sojina), soyabean rust (Phakopsora meibomiae and P. pachyrhizi); late-season diseases - soyabean cyst (Heterodera glycines), stem canker (Diaporthe phaseolorum var. caulivora and D. phaseolorum var. meridionalis), sudden death syndrome (Fusarium virguliforme), leaf blight (Cercospora kikuchii), anthracnose (Colletotrichum truncatum), and charcoal rot (Macrophomina phaseolina) of soyabeans. Disease management practices are also discussed.

The discovery of biotype diversity of soybean aphid (SA: Aphis glycines Matsumura) in North America emphasizes the necessity to identify new aphid-resistance genes. The soybean [Glycine max (L.) Merr.] plant introduction (PI) 200538 is a promising source of SA resistance because it shows a high level of resistance to a SA biotype that can overcome the SA-resistance gene Rag1 from 'Dowling'. The SA-resistance gene Rag2 was previously mapped from PI 200538 to a 10-cM marker interval on soybean chromosome 13 [formerly linkage group (LG) F]. The objective of this study was to fine map Rag2. This fine mapping was carried out using lines derived from 5,783 F(2) plants at different levels of backcrossing that were screened with flanking genetic markers for the presence of recombination in the Rag2 interval. Fifteen single nucleotide polymorphism (SNP) markers and two dominant polymerase chain reaction-based markers near Rag2 were developed by re-sequencing target intervals and sequence-tagged sites. These efforts resulted in the mapping of Rag2 to a 54-kb interval on the Williams 82 8x assembly (Glyma1). This Williams 82 interval contains seven predicted genes, which includes one nucleotide-binding site-leucine-rich repeat gene. SNP marker and candidate gene information identified in this study will be an important resource in marker-assisted selection for aphid resistance and for cloning the gene.

The fecundity, longevity, mortality, and maturation of the soybean aphid, Aphis glycines Matsumura (Homoptera: Aphididae), were characterized using three resistant soybean, Glycine max (L.) Merrill, genotypes ('Dowling', 'Jackson', and PI200538 'Sugao Zarai') and two susceptible genotypes ('Pana' and 'Loda'). Antibiosis in the resistant genotypes was demonstrated by a significant decrease in fecundity and longevity and increased mortality of A. glycines. Aphid fecundity, measured as number of offspring produced in the first 10 d by each viviparous aptera, was higher on Pana than on the resistant genotypes. Aphid longevity, the mean number of days a 1-d-old adult lived, was 7 d longer on Pana than on Dowling and Jackson. The mortality of both viviparous apterae and nymphs on resistant genotypes was significantly higher than on susceptible genotypes. A greater number of first instars survived to maturation stage (date of first reproduction) on susceptible plants than on resistant plants. None of the first instars placed on Dowling and PI200538 leaves survived to maturation. Observations of aphid behavior on leaves indicated that aphids departed from the leaves of resistant plants 8-24 h after being placed on them, whereas they remained indefinitely on leaves of susceptible cultivars and developed colonies. Reduced feeding due to ingestion of potentially toxic compounds in soybean may explain the possible mechanism of resistance to the soybean aphid.

The soybean aphid (Aphis glycines Matsumura (Hemiptera: Aphididae)) is an invasive insect pest of soybean (Glycine max (L.) Merr.) that was fi rst reported in North America in 2000. There are currently no reports of soybean aphid bio- type diversity and this information is needed before aphid resistance genes are deployed. The objective of this research was to test for aphid biotype variation. The response of two A. glycines isolates, one collected in Ohio and the other in Illinois, were compared by infesting eight soybean genotypes in nonchoice tests. The same genotypes also were tested with the Ohio isolate using a choice test. In the nonchoice test, there was a signifi cant (P < 0.0001) effect of aphid isolate, genotype, and a signifi cant aphid isolate by soybean genotype interaction for the number of aphids per plant 10 and 15 d after infestation. The responses of the eight geno- types to the Ohio isolate in the choice test were similar to their responses in nonchoice tests. PI 200538 and PI 567597C were resistant to both the Ohio and Illinois isolates and will be useful sources of resistance to both isolates. These tests confi rm that there are at least two distinct biotypes of A. glycines in North America.

The glucosinolates (GSs) were estimated in the normally eaten portions of 72 cultivars of Oriental brassica vegetables including mustard greens (Brassica juncea L.), Chinese kale (B. oleracea L. Alboglabra Group Bail.), Chinese cabbage (B. rapa L. Pekinensis Group Bail.), pak choy (B. rapa Chinensis Group Bail.), tendergreen (B. rapa Perviridis Group Bail.), turnip (B. rapa L. Rapifera Group Bail., B. narinosa Bail., and B. nipposinica Bail.). Variation in GS profiles was complex. There was variation in percentages of major GSs and total GS among B. juncea, B. oleracea, and the combination B. rapa plus narinosa and nipposinica and among four subspecific groups of rapa plus the two species closely related to rapa: narinosa and nipposinica. B. juncea had distinctively high proportions of allyl-GS, ranging from 81% to 94%, whereas B. oleracea had distinctively high proportions of 4-methylsulfinylbutyl-GS, ranging from 9% to 68%. Differences in GS profiles among the rapa groups, narinosa and nipposinica, were less distinctive. Cultivars of pak choy from China differed in percentages of three minor GSs from cultivars from Japan and elsewhere. There was also variation among cultivars of Chinese kale and between turnip foliage and roots.

Rapid-cycling populations of six economically important species in the genus Brassica have unusual potential for resolving many problems in plant biology and for use in education. Rapid-cycling brassicas can produce up to ten generations of seed per year and serve as models for research in genetics, host-parasite relations, molecular biology, cell biology, plant biochemistry, population biology, and plant breeding. Brassicas are a highly diverse group of crop plants that have great economic value as vegetables and as sources of condiment mustard, edible and industrial oil, animal fodder, and green manure. These plants can also be used in the classroom as convenient, rapidly responding, living plant materials for "hands on" learning at all levels of our educational system.