98 results on '"Crosier, M"'
Search Results
2. Minisatellite mutation and recombination
- Author
-
Armour, J. A. L., Monckton, D. G., Neil, D. L., Crosier, M., Tamaki, K., Macleod, A., Jeffreys, A. J., Sumner, A. T., and Chandley, A. C.
- Published
- 1993
- Full Text
- View/download PDF
3. Principles and Recent Advances in Human DNA Fingerprinting
- Author
-
Jeffreys, A. J., Royle, N. J., Patel, I., Armour, J. A. L., MacLeod, A., Collick, A., Gray, I. C., Neumann, R., Gibbs, M., Crosier, M., Hill, M., Signer, E., Monckton, D., Burke, Terry, editor, Dolf, Gaudenz, editor, Jeffreys, Alec J., editor, and Wolff, Roger, editor
- Published
- 1991
- Full Text
- View/download PDF
4. Principles and Recent Advances in DNA Fingerprinting
- Author
-
Jeffreys, A. J., Royle, N. J., Patel, I., Armour, J. A. L., MacLeod, A., Collick, A., Gray, I. C., Neumann, R., Gibbs, M., Crosier, M., Hill, M., Signer, E., Monckton, D., Berghaus, G., editor, Brinkmann, B., editor, Rittner, C., editor, and Staak, M., editor
- Published
- 1991
- Full Text
- View/download PDF
5. Associations of APOE gene polymorphisms with bone mineral density and fracture risk: a meta-analysis
- Author
-
Peter, I., Crosier, M. D., Yoshida, M., Booth, S. L., Cupples, L. A., Dawson-Hughes, B., Karasik, D., Kiel, D. P., Ordovas, J. M., and Trikalinos, T. A.
- Published
- 2011
- Full Text
- View/download PDF
6. Using Basic Image Features for Texture Classification
- Author
-
Crosier, M. and Griffin, L. D.
- Published
- 2010
- Full Text
- View/download PDF
7. DNA sequence and analysis of human chromosome 9
- Author
-
Humphray, S. J., Oliver, K., Hunt, A. R., Plumb, R. W., Loveland, J. E., Howe, K. L., Andrews, T. D., Searle, S., Hunt, S. E., Scott, C. E., Jones, M. C., Ainscough, R., Almeida, J. P., Ambrose, K. D., Ashwell, R. I. S., Babbage, A. K., Babbage, S., Bagguley, C. L., Bailey, J., Banerjee, R., Barker, D. J., Barlow, K. F., Bates, K., Beasley, H., Beasley, O., Bird, C. P., Bray-Allen, S., Brown, A. J., Brown, J. Y., Burford, D., Burrill, W., Burton, J., Carder, C., Carter, N. P., Chapman, J. C., Chen, Y., Clarke, G., Clark, S. Y., Clee, C. M., Clegg, S., Collier, R. E., Corby, N., Crosier, M., Cummings, A. T., Davies, J., Dhami, P., Dunn, M., Dutta, I., Dyer, L. W., Earthrowl, M. E., Faulkner, L., Fleming, C. J., Frankish, A., Frankland, J. A., French, L., Fricker, D. G., Garner, P., Garnett, J., Ghori, J., Gilbert, J. G. R., Glison, C., Grafham, D. V., Gribble, S., Griffiths, C., Griffiths-Jones, S., Grocock, R., Guy, J., Hall, R. E., Hammond, S., Harley, J. L., Harrison, E. S. I., Hart, E. A., Heath, P. D., Henderson, C. D., Hopkins, B. L., Howard, P. J., Howden, P. J., Huckle, E., Johnson, C., Johnson, D., Joy, A. A., Kay, M., Keenan, S., Kershaw, J. K., Kimberley, A. M., King, A., Knights, A., Laird, G. K., Langford, C., Lawlor, S., Leongamornlert, D. A., Leversha, M., Lloyd, C., Lloyd, D. M., Lovell, J., Martin, S., Mashreghi-Mohammadi, M., Matthews, L., McLaren, S., McLay, K. E., McMurray, A., Milne, S., Nickerson, T., Nisbett, J., Nordsiek, G., Pearce, A. V., Peck, A. I., Porter, K. M., Pandian, R., Pelan, S., Phillimore, B., Povey, S., Ramsey, Y., Rand, V., Scharfe, M., Sehra, H. K., Shownkeen, R., Sims, S. K., Skuce, C. D., Smith, M., Steward, C. A., Swarbreck, D., Sycamore, N., Tester, J., Thorpe, A., Tracey, A., Tromans, A., Thomas, D. W., Wall, M., Wallis, J. M., West, A. P., Whitehead, S. L., Willey, D. L., Williams, S. A., Wilming, L., Wray, P. W., Young, L., Ashurst, J. L., Coulson, A., Blocker, H., Durbin, R., Sulston, J. E., Hubbard, T., Jackson, M. J., Bentley, D. R., Beck, S., Rogers, J., and Dunham, I.
- Subjects
Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Author(s): S. J. Humphray (corresponding author) [1]; K. Oliver [1]; A. R. Hunt [1]; R. W. Plumb [1]; J. E. Loveland [1]; K. L. Howe [1]; T. D. Andrews [1]; [...]
- Published
- 2004
- Full Text
- View/download PDF
8. Phenotypic variability in 49 cases of ESCO2 mutations, including novel missense and codon deletion in the acetyltransferase domain, correlates with ESCO2 expression and establishes the clinical criteria for Roberts syndrome
- Author
-
Vega, H, Trainer, A H, Gordillo, M, Crosier, M, Kayserili, H, Skovby, F, Uzielli, M L, Schnur, R E, Manouvrier, S, Blair, E, Hurst, J A, Forzano, F, Meins, M, Simola, K O, Raas-Rothschild, A, Hennekam, R C, and Jabs, E Wang
- Published
- 2010
- Full Text
- View/download PDF
9. Trefoil proteins and breast cancer
- Author
-
WESTLEY, B. R., CROSIER, M., PREST, S. J., GRIFFITHS, C. D.M., and MAY, F. E.B.
- Published
- 2002
10. 4:03 PM Abstract No. 98 Initial large core needle biopsy (LCNB) of suspicious thyroid nodules: sequential cohort series without and with cytopathologist rapid onsite evaluation (ROSE)
- Author
-
Florek, R., primary, Helm, M., additional, Brown, J., additional, and Crosier, M., additional
- Published
- 2018
- Full Text
- View/download PDF
11. Basic image features (BIFs) arising from approximate symmetry type
- Author
-
Griffin, L.D., Lillholm, M., Crosier, M., Sande, Van, J., Tai, Xue-Cheng, Mørken, K., Lysaker, M., Lie, K.A., and Biomedical Engineering
- Subjects
business.industry ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Pattern recognition ,Filter (signal processing) ,Image (mathematics) ,Image texture ,Local symmetry ,Computer Science::Computer Vision and Pattern Recognition ,Artificial intelligence ,Symmetry (geometry) ,business ,Group theory ,Linear filter ,Feature detection (computer vision) ,Mathematics - Abstract
We consider detection of local image symmetry using linear filters. We prove a simple criterion for determining if a filter is sensitive to a group of symmetries. We show that derivative-of-Gaussian (DtG) filters are excellent at detecting local image symmetry. Building on this, we propose a very simple algorithm that, based on the responses of a bank of six DtG filters, classifies each location of an image into one of seven Basic Image Features (BIFs). This effectively and efficiently realizes Marr's proposal for an image primal sketch. We summarize results on the use of BIFs for texture classification, object category detection, and pixel classification.
- Published
- 2009
12. The clinical and molecular genetic features of idiopathic infantile periodic alternating nystagmus
- Author
-
Thomas, M. G., primary, Crosier, M., additional, Lindsay, S., additional, Kumar, A., additional, Thomas, S., additional, Araki, M., additional, Talbot, C. J., additional, McLean, R. J., additional, Surendran, M., additional, Taylor, K., additional, Leroy, B. P., additional, Moore, A. T., additional, Hunter, D. G., additional, Hertle, R. W., additional, Tarpey, P., additional, Langmann, A., additional, Lindner, S., additional, Brandner, M., additional, and Gottlob, I., additional
- Published
- 2011
- Full Text
- View/download PDF
13. Associations of APOE gene polymorphisms with bone mineral density and fracture risk: a meta-analysis
- Author
-
Peter, I., primary, Crosier, M. D., additional, Yoshida, M., additional, Booth, S. L., additional, Cupples, L. A., additional, Dawson-Hughes, B., additional, Karasik, D., additional, Kiel, D. P., additional, Ordovas, J. M., additional, and Trikalinos, T. A., additional
- Published
- 2010
- Full Text
- View/download PDF
14. Phenotypic variability in 49 cases of ESCO2 mutations, including novel missense and codon deletion in the acetyltransferase domain, correlates with ESCO2 expression and establishes the clinical criteria for Roberts syndrome
- Author
-
Vega, H., primary, Trainer, A. H., additional, Gordillo, M., additional, Crosier, M., additional, Kayserili, H., additional, Skovby, F., additional, Uzielli, M. L. G., additional, Schnur, R. E., additional, Manouvrier, S., additional, Blair, E., additional, Hurst, J. A., additional, Forzano, F., additional, Meins, M., additional, Simola, K. O. J., additional, Raas-Rothschild, A., additional, Hennekam, R. C. M., additional, and Jabs, E. W., additional
- Published
- 2009
- Full Text
- View/download PDF
15. Zipf's Law in Image Coding Schemes
- Author
-
Crosier, M. S., primary and Griffin, L. D., additional
- Published
- 2007
- Full Text
- View/download PDF
16. Texture classification with a dictionary of basic image features.
- Author
-
Crosier, M. and Griffin, L.D.
- Published
- 2008
- Full Text
- View/download PDF
17. Distribution of tandem repeat polymorphism within minisatellite MS621 (D5S110)
- Author
-
ARMOUR, J. A. L., primary, CROSIER, M., additional, and JEFFREYS, A. J., additional
- Published
- 1996
- Full Text
- View/download PDF
18. Abnormal Segregation of Alleles in CEPH Pedigree DNAs Arising from Allele Loss in Lymphoblastoid DNA
- Author
-
Royle, N.J., primary, Armour, J.A.L., additional, Crosier, M., additional, and Jeffreys, A.J., additional
- Published
- 1993
- Full Text
- View/download PDF
19. A polymorphic minisatellite(pMS628) on chromosome 3 (D3S1084)
- Author
-
Armour, J.A.L., primary, Crosier, M., additional, and Jeffreys, A.J., additional
- Published
- 1991
- Full Text
- View/download PDF
20. A highly polymorphic minisatellite (pMS626) on chromosome 13 (D13S10S)
- Author
-
Armour, J.A.L., primary, Crosier, M., additional, and Jeffreys, A.J., additional
- Published
- 1991
- Full Text
- View/download PDF
21. A highly polymorphic minisatellite (pMS627) on chromsome 14 (D14S44)
- Author
-
Crosier, M., primary, Armour, J.A.L., additional, and Jeffreys, A.J., additional
- Published
- 1991
- Full Text
- View/download PDF
22. Sequences flanking the centromere ofhuman chromosome 10 are a complex patchworkof arm-specific sequences, stable duplications and unstable sequences with homologies to telomeric and other centromeric locations.
- Author
-
Jackson, M. S., Rocchi, M., Thompson, G., Hearn, T., Crosier, M., Guy, J., Kirk, D., Mulligan, L., Ricco, A., Piccininni, S., Marzella, R., Viggiano, L., and Archidiacono, N.
- Abstract
Little is known about sequence organization close to human centromeres, despite empirical and theoretical data which suggest that it may be unusual. Here we present maps which physically define large sequence duplications flanking the centromeric satellites of human chromosome 10, together with a fluorescence in situ hybridization (FISH) analysis of pericentromeric sequence stability. Our results indicate that the duplications on each chromosome arm are organized into two blocks of ∼250 and 150 kb separated by ∼300 kb of non-duplicated DNA. The larger proximal blocks, containing ZNF11A, ZNF33A and ZNF37A (10p11) and ZNF11B, ZNF33B and ZNF37B(10q11), are inverted. However, the smaller distal blocks, containing D10S141A (10p11) and D10S141B (10q11), are not. A primate FISH analysis indicates that these loci were duplicated before the divergence of orang-utans from other Great Apes, that a cytogenetically cryptic pericentric inversion may have been involved in the formation of the flanking duplications and that they have undergone further rearrangement in other primate species. More surprising is the fact that sequences across the entire pericentromeric region appear to have undergone unprecedented levels of duplication, transposition, inversion and either deletion or sequence divergence in all primate species analysed. Extrapolating our data to the whole genome suggests that a minimum of 50 Mb of DNA in centromere-proximal regions is subject to an elevated level of mechanistically diverse sequence rearrangements compared with the bulk of genomic DNA. [ABSTRACT FROM AUTHOR]
- Published
- 1999
- Full Text
- View/download PDF
23. Photochemical Smiles Rearrangement and Meisenheimer Complex Formation Catalyzed by Hydroxide Ion via Electron Hole Transfer Catalysis
- Author
-
Wubbels, G. G., Ota, N., and Crosier, M. L.
- Abstract
Photochemical para-to-nitro Smiles rearrangement and para-to-nitro Meisenheimer complex formation occurs for nitrophenoxyethylamines with high concentrations of hydroxide ion in aqueous solution. Both photoreactions show first-order dependence on hydroxide ion concentration, but the mechanism involving hydroxide ion does not involve acid−base catalysis. The reactions take place from the triplet excited states of the nitrophenyl ethers. Analysis of quantum yields and kinetics is consistent with an electron hole transfer catalysis mechanism. - Published
- 2005
24. Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10q.
- Author
-
Guy, J., Spalluto, C., McMurray, A., Hearn, T., Crosier, M., Viggiano, L., Miolla, V., Archidiacono, N., Rocchi, M., Scott, C., Lee, P.A., Sulston, J., Rogers, J., Bentley, D., and Jackson, M.S.
- Abstract
Studies genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10q. Organization of centromeric heterochromatin; Transition from centric heterochromatin to euchromatin.
- Published
- 2000
- Full Text
- View/download PDF
25. Abnormal segregation of alleles in CEPH pedigree DNAs arising from allele loss in lymphoblastoid DNA
- Author
-
Royle, N.J., Armour, J.A.L., Crosier, M., and Jeffreys, A.J.
- Published
- 1993
- Full Text
- View/download PDF
26. Human CHN1 Mutations Hyperactivate α2-Chimaerin and Cause Duane's Retraction Syndrome
- Author
-
Susan Lindsay, Sarah Guthrie, Binoy Appukuttan, Long Cheng, Michelle Cheung, Elizabeth R. Young, J. Timothy Stout, Alfonso Baldi, Dominic Davenport, Noriko Miyake, Jim Allen, Moira Crosier, Maria Laura Ciccarelli, Mustafa Sahin, Mara Campioni, Wai-Man Chan, Maria Psatha, Alessandro Iannaccone, Stephen P. Christiansen, Nick J. Gutowski, Caroline Andrews, John K. Chilton, Elizabeth C. Engle, Laura E. Mariani, Sian Ellard, Juan Carlos Zenteno, Krystal Law, Miyake, N., Chilton, J., Psatha, M., Cheng, L., Andrews, C., Chan, W., Law, K., Crosier, M., Lindsay, M., Cheung, M., Allen, J., Gutowsky, N., Ellard, S., Young, E., Iannaccone, A., Appukuttan, B., Stout, J., Christiansen, S., Ciccarelli, L., Baldi, Alfonso, Campioni, M., Zenteno, J., Mariani, L., Sahin, M., Guthrie, S., and Engle, E.
- Subjects
Male ,Heterozygote ,Duane’s retraction syndrome ,Molecular Sequence Data ,Nonsense mutation ,Mutant ,Mutation, Missense ,Chick Embryo ,Extraocular muscles ,Duane Retraction Syndrome ,Article ,Cell Line ,Abducens Nerve ,Oculomotor Nerve ,Chimerin 1 ,medicine ,Animals ,Humans ,Missense mutation ,Amino Acid Sequence ,Genetics ,Multidisciplinary ,biology ,Gene Expression Profiling ,Cell Membrane ,Axons ,eye diseases ,Pedigree ,Cell biology ,Oculomotor Muscle ,medicine.anatomical_structure ,Oculomotor Muscles ,biology.protein ,RacGAP signaling protein ,Female ,Axon guidance - Abstract
Duane's retraction syndrome (DRS) is a complex congenital eye movement disorder caused by aberrant innervation of the extraocular muscles by axons of brainstem motor neurons. Studying families with a variant form of the disorder (DURS2-DRS), we have identified causative heterozygous missense mutations in CHN1 , a gene on chromosome 2q31 that encodes α2-chimaerin, a Rac guanosine triphosphatase–activating protein (RacGAP) signaling protein previously implicated in the pathfinding of corticospinal axons in mice. We found that these are gain-of-function mutations that increase α2-chimaerin RacGAP activity in vitro. Several of the mutations appeared to enhance α2-chimaerin translocation to the cell membrane or enhance its ability to self-associate. Expression of mutant α2-chimaerin constructs in chick embryos resulted in failure of oculomotor axons to innervate their target extraocular muscles. We conclude that α2-chimaerin has a critical developmental function in ocular motor axon pathfinding.
- Published
- 2008
- Full Text
- View/download PDF
27. SRPK3 Is Essential for Cognitive and Ocular Development in Humans and Zebrafish, Explaining X-Linked Intellectual Disability.
- Author
-
Roychaudhury A, Lee YR, Choi TI, Thomas MG, Khan TN, Yousaf H, Skinner C, Maconachie G, Crosier M, Horak H, Constantinescu CS, Kim TY, Lee KH, Kyung JJ, Wang T, Ku B, Chodirker BN, Hammer MF, Gottlob I, Norton WHJ, Gerlai R, Kim HG, Graziano C, Pippucci T, Iovino E, Montanari F, Severi G, Toro C, Boerkoel CF, Cha HS, Choi CY, Kim S, Yoon JH, Gilmore K, Vora NL, Davis EE, Chudley AE, Schwartz CE, and Kim CH
- Subjects
- Animals, Humans, Male, Female, Child, Intellectual Disability genetics, X-Linked Intellectual Disability genetics, Child, Preschool, Adolescent, Cognition physiology, Adult, Eye, Zebrafish, Protein Serine-Threonine Kinases genetics
- Abstract
Objective: Intellectual disability is often the outcome of neurodevelopmental disorders and is characterized by significant impairments in intellectual and adaptive functioning. X-linked intellectual disability (XLID) is a subset of these disorders caused by genetic defects on the X chromosome, affecting about 2 out of 1,000 males. In syndromic form, it leads to a broad range of cognitive, behavioral, ocular, and physical disabilities., Methods: Employing exome or genome sequencing, here we identified 4 missense variants (c.475C > G; p.H159D, c.1373C > A; p.T458N, and c.1585G > A; p.E529K, c.953C > T; p.S318L) and a putative truncating variant (c.1413_1414del; p.Y471*) in the SRPK3 gene in 9 XLID patients from 5 unrelated families. To validate SRPK3 as a novel XLID gene, we established a knockout (KO) model of the SRPK3 orthologue in zebrafish., Results: The 8 patients ascertained postnatally shared common clinical features including intellectual disability, agenesis of the corpus callosum, abnormal eye movement, and ataxia. A ninth case, ascertained prenatally, had a complex structural brain phenotype. Together, these data indicate a pathological role of SRPK3 in neurodevelopmental disorders. In post-fertilization day 5 larvae (free swimming stage), KO zebrafish exhibited severe deficits in eye movement and swim bladder inflation, mimicking uncontrolled ocular movement and physical clumsiness observed in human patients. In adult KO zebrafish, cerebellar agenesis and behavioral abnormalities were observed, recapitulating human phenotypes of cerebellar atrophy and intellectual disability., Interpretation: Overall, these results suggest a crucial role of SRPK3 in the pathogenesis of syndromic X-linked intellectual disability and provide new insights into brain development, cognitive and ocular dysfunction in both humans and zebrafish. ANN NEUROL 2024;96:914-931., (© 2024 The Author(s). Annals of Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association.)
- Published
- 2024
- Full Text
- View/download PDF
28. Single-cell analyses reveal transient retinal progenitor cells in the ciliary margin of developing human retina.
- Author
-
Dorgau B, Collin J, Rozanska A, Zerti D, Unsworth A, Crosier M, Hussain R, Coxhead J, Dhanaseelan T, Patel A, Sowden JC, FitzPatrick DR, Queen R, and Lako M
- Subjects
- Humans, Organoids metabolism, Organoids cytology, Gene Expression Regulation, Developmental, Chromatin metabolism, Transcription Factors metabolism, Transcription Factors genetics, Pluripotent Stem Cells cytology, Pluripotent Stem Cells metabolism, RNA-Seq, Cell Lineage, Transcriptome, Single-Cell Analysis methods, Retina cytology, Retina metabolism, Cell Differentiation, Stem Cells cytology, Stem Cells metabolism
- Abstract
The emergence of retinal progenitor cells and differentiation to various retinal cell types represent fundamental processes during retinal development. Herein, we provide a comprehensive single cell characterisation of transcriptional and chromatin accessibility changes that underline retinal progenitor cell specification and differentiation over the course of human retinal development up to midgestation. Our lineage trajectory data demonstrate the presence of early retinal progenitors, which transit to late, and further to transient neurogenic progenitors, that give rise to all the retinal neurons. Combining single cell RNA-Seq with spatial transcriptomics of early eye samples, we demonstrate the transient presence of early retinal progenitors in the ciliary margin zone with decreasing occurrence from 8 post-conception week of human development. In retinal progenitor cells, we identified a significant enrichment for transcriptional enhanced associate domain transcription factor binding motifs, which when inhibited led to loss of cycling progenitors and retinal identity in pluripotent stem cell derived organoids., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
29. Development of the arterial roots and ventricular outflow tracts.
- Author
-
Anderson RH, Lamers WH, Hikspoors JPJM, Mohun TJ, Bamforth SD, Chaudhry B, Eley L, Kerwin J, Crosier M, and Henderson DJ
- Subjects
- Mice, Animals, Humans, Heart Ventricles, Pulmonary Artery, Heart, Heart Defects, Congenital, Embryonic Structures, Extracellular Matrix
- Abstract
The separation of the outflow tract of the developing heart into the systemic and pulmonary arterial channels remains controversial and poorly understood. The definitive outflow tracts have three components. The developing outflow tract, in contrast, has usually been described in two parts. When the tract has exclusively myocardial walls, such bipartite description is justified, with an obvious dogleg bend separating proximal and distal components. With the addition of non-myocardial walls distally, it becomes possible to recognise three parts. The middle part, which initially still has myocardial walls, contains within its lumen a pair of intercalated valvar swellings. The swellings interdigitate with the distal ends of major outflow cushions, formed by the remodelling of cardiac jelly, to form the primordiums of the arterial roots. The proximal parts of the major cushions, occupying the proximal part of the outflow tract, which also has myocardial walls, themselves fuse and muscularise. The myocardial shelf thus formed remodels to become the free-standing subpulmonary infundibulum. Details of all these processes are currently lacking. In this account, we describe the anatomical changes seen during the overall remodelling. Our interpretations are based on the interrogation of serially sectioned histological and high-resolution episcopic microscopy datasets prepared from developing human and mouse embryos, with some of the datasets processed and reconstructed to reveal the specific nature of the tissues contributing to the separation of the outflow channels. Our findings confirm that the tripartite postnatal arrangement can be correlated with the changes occurring during development., (© 2023 The Authors. Journal of Anatomy published by John Wiley & Sons Ltd on behalf of Anatomical Society.)
- Published
- 2024
- Full Text
- View/download PDF
30. Spatial transcriptomics reveals novel genes during the remodelling of the embryonic human arterial valves.
- Author
-
Queen R, Crosier M, Eley L, Kerwin J, Turner JE, Yu J, Alqahtani A, Dhanaseelan T, Overman L, Soetjoadi H, Baldock R, Coxhead J, Boczonadi V, Laude A, Cockell SJ, Kane MA, Lisgo S, and Henderson DJ
- Subjects
- Humans, Mice, Animals, Aortic Valve abnormalities, Gene Expression Profiling, Transcriptome genetics, Heart Valve Diseases genetics, Bicuspid Aortic Valve Disease metabolism
- Abstract
Abnormalities of the arterial valves, including bicuspid aortic valve (BAV) are amongst the most common congenital defects and are a significant cause of morbidity as well as predisposition to disease in later life. Despite this, and compounded by their small size and relative inaccessibility, there is still much to understand about how the arterial valves form and remodel during embryogenesis, both at the morphological and genetic level. Here we set out to address this in human embryos, using Spatial Transcriptomics (ST). We show that ST can be used to investigate the transcriptome of the developing arterial valves, circumventing the problems of accurately dissecting out these tiny structures from the developing embryo. We show that the transcriptome of CS16 and CS19 arterial valves overlap considerably, despite being several days apart in terms of human gestation, and that expression data confirm that the great majority of the most differentially expressed genes are valve-specific. Moreover, we show that the transcriptome of the human arterial valves overlaps with that of mouse atrioventricular valves from a range of gestations, validating our dataset but also highlighting novel genes, including four that are not found in the mouse genome and have not previously been linked to valve development. Importantly, our data suggests that valve transcriptomes are under-represented when using commonly used databases to filter for genes important in cardiac development; this means that causative variants in valve-related genes may be excluded during filtering for genomic data analyses for, for example, BAV. Finally, we highlight "novel" pathways that likely play important roles in arterial valve development, showing that mouse knockouts of RBP1 have arterial valve defects. Thus, this study has confirmed the utility of ST for studies of the developing heart valves and broadens our knowledge of the genes and signalling pathways important in human valve development., Competing Interests: The authors have declared that no competing interests exist. , (Copyright: © 2023 Queen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
- Full Text
- View/download PDF
31. [Breaking the silence: The emergency to improve access to healthcare for deaf patients].
- Author
-
Gay-Crosier M, Mawa Kamdem M, Selz Amaudruz F, and Dumoulin S
- Subjects
- Humans, Frustration, Knowledge, Delivery of Health Care, Communication, Emergency Service, Hospital
- Abstract
Until this day, deafness (and hearing loss) is still a major public health concern in our society. In Switzerland, congenital hearing loss affects about 0,1% of the population. Through a literature review, this article aims to highlight the health inequalities affecting the deaf population. It also reveals the shortcomings of a healthcare system made of practitioners who have limited knowledge about the deaf population and its specific needs, and whose care, particularly in the emergency department, still remains inappropriate. Lastly, we attempt to propose concrete measures that would bridge the communication gap in practice, with the goal of improving the quality of care and reducing mutual frustrations., Competing Interests: Les autrices n’ont déclaré aucun conflit d’intérêts en relation avec cet article.
- Published
- 2023
- Full Text
- View/download PDF
32. Eye movement defects in KO zebrafish reveals SRPK3 as a causative gene for an X-linked intellectual disability.
- Author
-
Lee YR, Thomas MG, Roychaudhury A, Skinner C, Maconachie G, Crosier M, Horak H, Constantinescu CS, Choi TI, Kyung JJ, Wang T, Ku B, Chodirker BN, Hammer MF, Gottlob I, Norton WHJ, Chudley AE, Schwartz CE, and Kim CH
- Abstract
Intellectual disability (ID) is a common neurodevelopmental disorder characterized by significantly impaired intellectual and adaptive functioning. X-linked ID (XLID) disorders, caused by defects in genes on the X chromosome, affect 1.7 out of 1,000 males. Employing exome sequencing, we identified three missense mutations (c.475C>G; p.H159D, c.1373C>A; p.T458N, and c.1585G>A; p.E529K) in the SRPK3 gene in seven XLID patients from three independent families. Clinical features common to the patients are intellectual disability, agenesis of the corpus callosum, abnormal smooth pursuit eye movement, and ataxia. SRPK proteins are known to be involved in mRNA processing and, recently, synaptic vesicle and neurotransmitter release. In order to validate SRPK3 as a novel XLID gene, we established a knockout (KO) model of the SRPK3 orthologue in zebrafish. In day 5 of larval stage, KO zebrafish showed significant defects in spontaneous eye movement and swim bladder inflation. In adult KO zebrafish, we found agenesis of cerebellar structures and impairments in social interaction. These results suggest an important role of SRPK3 in eye movements, which might reflect learning problems, intellectual disability, and other psychiatric disorders., Competing Interests: CONFLICT OF INTEREST The authors show no conflict of interest.
- Published
- 2023
- Full Text
- View/download PDF
33. Author Correction: Segregation of mitochondrial DNA heteroplasmy through a developmental genetic bottleneck in human embryos.
- Author
-
Floros VI, Pyle A, Dietmann S, Wei W, Tang WWC, Irie N, Payne B, Capalbo A, Noli L, Coxhead J, Hudson G, Crosier M, Strahl H, Khalaf Y, Saitou M, Ilic D, Surani MA, and Chinnery PF
- Published
- 2023
- Full Text
- View/download PDF
34. Tyramide signal amplification coupled with multiple immunolabeling and RNAScope in situ hybridization in formaldehyde-fixed paraffin-embedded human fetal brain.
- Author
-
Alzu'bi A, Sankar N, Crosier M, Kerwin J, and Clowry GJ
- Subjects
- Brain metabolism, Humans, In Situ Hybridization, Paraffin Embedding methods, Formaldehyde, RNA genetics
- Abstract
Several strategies have been recently introduced to improve the practicality of multiple immunolabeling and RNA in situ hybridization protocols. Tyramide signal amplification (TSA) is a powerful method used to improve the detection sensitivity of immunohistochemistry. RNAScope is a novel commercially available in situ hybridization assay for the detection of RNA expression. In this work, we describe the use of TSA and RNAScope in situ hybridization as extremely sensitive and specific methods for the evaluation of protein and RNA expression in formaldehyde-fixed paraffin-embedded human fetal brain sections. These two techniques, when properly optimized, were highly compatible with routine formaldehyde-fixed paraffin-embedded tissue that preserves the best morphological characteristics of delicate fetal brain samples, enabling an unparalleled ability to simultaneously visualize the expression of multiple protein and mRNA of genes that are sparsely expressed in the human fetal telencephalon., (© 2022 Anatomical Society.)
- Published
- 2022
- Full Text
- View/download PDF
35. Transcriptome-Wide Analysis Reveals a Role for Extracellular Matrix and Integrin Receptor Genes in Otic Neurosensory Differentiation from Human iPSCs.
- Author
-
Johnson Chacko L, Lahlou H, Steinacher C, Assou S, Messat Y, Dudás J, Edge A, Crespo B, Crosier M, Sergi C, Schrott-Fischer A, and Zine A
- Subjects
- Cell Lineage, Ear, Inner metabolism, Extracellular Matrix metabolism, Humans, Induced Pluripotent Stem Cells metabolism, Integrins genetics, Integrins metabolism, Neural Stem Cells metabolism, Receptors, Immunologic genetics, Receptors, Immunologic metabolism, Cell Differentiation, Ear, Inner cytology, Induced Pluripotent Stem Cells cytology, Neural Stem Cells cytology, Sensory Receptor Cells cytology, Sensory Receptor Cells metabolism, Transcriptome
- Abstract
We analyzed transcriptomic data from otic sensory cells differentiated from human induced pluripotent stem cells (hiPSCs) by a previously described method to gain new insights into the early human otic neurosensory lineage. We identified genes and biological networks not previously described to occur in the human otic sensory developmental cell lineage. These analyses identified and ranked genes known to be part of the otic sensory lineage program (SIX1, EYA1, GATA3, etc.), in addition to a number of novel genes encoding extracellular matrix (ECM) (COL3A1, COL5A2, DCN, etc.) and integrin (ITG) receptors (ITGAV, ITGA4, ITGA) for ECM molecules. The results were confirmed by quantitative PCR analysis of a comprehensive panel of genes differentially expressed during the time course of hiPSC differentiation in vitro. Immunocytochemistry validated results for select otic and ECM/ITG gene markers in the in vivo human fetal inner ear. Our screen shows ECM and ITG gene expression changes coincident with hiPSC differentiation towards human otic neurosensory cells. Our findings suggest a critical role of ECM-ITG interactions with otic neurosensory lineage genes in early neurosensory development and cell fate determination in the human fetal inner ear.
- Published
- 2021
- Full Text
- View/download PDF
36. Author Correction: Segregation of mitochondrial DNA heteroplasmy through a developmental genetic bottleneck in human embryos.
- Author
-
Floros VI, Pyle A, Dietmann S, Wei W, Tang WWC, Irie N, Payne B, Capalbo A, Noli L, Coxhead J, Hudson G, Crosier M, Strahl H, Khalaf Y, Saitou M, Ilic D, Surani MA, and Chinnery PF
- Abstract
In the version of this Letter originally published, an author error led to the affiliations for Brendan Payne, Jonathan Coxhead and Gavin Hudson being incorrect. The correct affiliations are: Brendan Payne:
3 Wellcome Trust Centre for Mitochondrial Research, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.6 Institute of Neuroscience, Newcastle University, Newcastle upon Tyne, UK; this is a new affiliation 6 and subsequent existing affiliations have been renumbered. Jonathan Coxhead:11 Genomic Core Facility, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK; this is a new affiliation 11 and subsequent existing affiliations have been renumbered. Gavin Hudson:3 Wellcome Trust Centre for Mitochondrial Research, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK. In addition, in Fig. 2d, the numbers on the x-axis of the left plot were incorrectly labelled as negative; they should have been positive. These errors have now been corrected in all online versions of the Letter.- Published
- 2018
- Full Text
- View/download PDF
37. Segregation of mitochondrial DNA heteroplasmy through a developmental genetic bottleneck in human embryos.
- Author
-
Floros VI, Pyle A, Dietmann S, Wei W, Tang WCW, Irie N, Payne B, Capalbo A, Noli L, Coxhead J, Hudson G, Crosier M, Strahl H, Khalaf Y, Saitou M, Ilic D, Surani MA, and Chinnery PF
- Subjects
- Embryo, Mammalian, Gene Expression Regulation, Developmental, Germ Cells metabolism, High-Throughput Nucleotide Sequencing, Humans, Mitochondria genetics, Mutation, Oocytes growth & development, Oocytes metabolism, RNA, Transfer genetics, Single-Cell Analysis, DNA Replication genetics, DNA, Mitochondrial genetics, Embryonic Development genetics, Germ Cells growth & development
- Abstract
Mitochondrial DNA (mtDNA) mutations cause inherited diseases and are implicated in the pathogenesis of common late-onset disorders, but how they arise is not clear
1,2 . Here we show that mtDNA mutations are present in primordial germ cells (PGCs) within healthy female human embryos. Isolated PGCs have a profound reduction in mtDNA content, with discrete mitochondria containing ~5 mtDNA molecules. Single-cell deep mtDNA sequencing of in vivo human female PGCs showed rare variants reaching higher heteroplasmy levels in late PGCs, consistent with the observed genetic bottleneck. We also saw the signature of selection against non-synonymous protein-coding, tRNA gene and D-loop variants, concomitant with a progressive upregulation of genes involving mtDNA replication and transcription, and linked to a transition from glycolytic to oxidative metabolism. The associated metabolic shift would expose deleterious mutations to selection during early germ cell development, preventing the relentless accumulation of mtDNA mutations in the human population predicted by Muller's ratchet. Mutations escaping this mechanism will show shifts in heteroplasmy levels within one human generation, explaining the extreme phenotypic variation seen in human pedigrees with inherited mtDNA disorders.- Published
- 2018
- Full Text
- View/download PDF
38. The formation of endoderm-derived taste sensory organs requires a Pax9-dependent expansion of embryonic taste bud progenitor cells.
- Author
-
Kist R, Watson M, Crosier M, Robinson M, Fuchs J, Reichelt J, and Peters H
- Subjects
- Animals, Endoderm embryology, Epithelial Cells physiology, Gene Expression Regulation, Developmental, Hedgehog Proteins genetics, Hedgehog Proteins metabolism, Homeodomain Proteins genetics, Homeodomain Proteins metabolism, Mice, Inbred C57BL, Mice, Transgenic, Mutation, PAX9 Transcription Factor, Paired Box Transcription Factors genetics, Palate, Soft cytology, Palate, Soft embryology, SOX9 Transcription Factor genetics, SOX9 Transcription Factor metabolism, Taste Buds embryology, Tongue cytology, Tumor Suppressor Proteins genetics, Tumor Suppressor Proteins metabolism, Prospero-Related Homeobox 1 Protein, Embryonic Stem Cells physiology, Endoderm cytology, Paired Box Transcription Factors metabolism, Tongue embryology
- Abstract
In mammals, taste buds develop in different regions of the oral cavity. Small epithelial protrusions form fungiform papillae on the ectoderm-derived dorsum of the tongue and contain one or few taste buds, while taste buds in the soft palate develop without distinct papilla structures. In contrast, the endoderm-derived circumvallate and foliate papillae located at the back of the tongue contain a large number of taste buds. These taste buds cluster in deep epithelial trenches, which are generated by intercalating a period of epithelial growth between initial placode formation and conversion of epithelial cells into sensory cells. How epithelial trench formation is genetically regulated during development is largely unknown. Here we show that Pax9 acts upstream of Pax1 and Sox9 in the expanding taste progenitor field of the mouse circumvallate papilla. While a reduced number of taste buds develop in a growth-retarded circumvallate papilla of Pax1 mutant mice, its development arrests completely in Pax9-deficient mice. In addition, the Pax9 mutant circumvallate papilla trenches lack expression of K8 and Prox1 in the taste bud progenitor cells, and gradually differentiate into an epidermal-like epithelium. We also demonstrate that taste placodes of the soft palate develop through a Pax9-dependent induction. Unexpectedly, Pax9 is dispensable for patterning, morphogenesis and maintenance of taste buds that develop in ectoderm-derived fungiform papillae. Collectively, our data reveal an endoderm-specific developmental program for the formation of taste buds and their associated papilla structures. In this pathway, Pax9 is essential to generate a pool of taste bud progenitors and to maintain their competence towards prosensory cell fate induction.
- Published
- 2014
- Full Text
- View/download PDF
39. Abnormal retinal development associated with FRMD7 mutations.
- Author
-
Thomas MG, Crosier M, Lindsay S, Kumar A, Araki M, Leroy BP, McLean RJ, Sheth V, Maconachie G, Thomas S, Moore AT, and Gottlob I
- Subjects
- Adolescent, Adult, Aged, Case-Control Studies, Child, Cytoskeletal Proteins metabolism, Embryo, Mammalian, Female, Fetus, Gene Expression Regulation, Developmental, Humans, In Situ Hybridization, Male, Membrane Proteins metabolism, Middle Aged, Nerve Fibers metabolism, Nerve Fibers pathology, Nystagmus, Congenital metabolism, Nystagmus, Congenital pathology, Optic Disk metabolism, Optic Disk pathology, Retina metabolism, Retina pathology, Tomography, Optical Coherence, Cytoskeletal Proteins genetics, Membrane Proteins genetics, Mutation, Nystagmus, Congenital genetics
- Abstract
Idiopathic infantile nystagmus (IIN) is a genetically heterogeneous disorder, often associated with FRMD7 mutations. As the appearance of the retina is reported to be normal based on conventional fundus photography, IIN is postulated to arise from abnormal cortical development. To determine whether the afferent visual system is involved in FRMD7 mutations, we performed in situ hybridization studies in human embryonic and fetal stages (35 days post-ovulation to 9 weeks post-conception). We show a dynamic retinal expression pattern of FRMD7 during development. We observe expression within the outer neuroblastic layer, then in the inner neuroblastic layer and at 9 weeks post-conception a bilaminar expression pattern. Expression was also noted within the developing optic stalk and optic disk. We identified a large cohort of IIN patients (n = 100), and performed sequence analysis which revealed 45 patients with FRMD7 mutations. Patients with FRMD7 mutations underwent detailed retinal imaging studies using ultrahigh-resolution optical coherence tomography. The tomograms were compared with a control cohort (n = 60). The foveal pit was significantly shallower in FRMD7 patients (P < 0.0001). The optic nerve head morphology was abnormal with significantly decreased optic disk area, retinal nerve fiber layer thickness, cup area and cup depth in FRMD7 patients (P < 0.0001). This study shows for the first time that abnormal afferent system development is associated with FRMD7 mutations and could be an important etiological factor in the development of nystagmus., (© The Author 2014. Published by Oxford University Press.)
- Published
- 2014
- Full Text
- View/download PDF
40. The tissue-specific RNA binding protein T-STAR controls regional splicing patterns of neurexin pre-mRNAs in the brain.
- Author
-
Ehrmann I, Dalgliesh C, Liu Y, Danilenko M, Crosier M, Overman L, Arthur HM, Lindsay S, Clowry GJ, Venables JP, Fort P, and Elliott DJ
- Subjects
- Alternative Splicing, Animals, Brain metabolism, Exons, Humans, RNA-Binding Proteins genetics, RNA Precursors metabolism, RNA Splicing
- Abstract
The RNA binding protein T-STAR was created following a gene triplication 520-610 million years ago, which also produced its two parologs Sam68 and SLM-1. Here we have created a T-STAR null mouse to identify the endogenous functions of this RNA binding protein. Mice null for T-STAR developed normally and were fertile, surprisingly, given the high expression of T-STAR in the testis and the brain, and the known infertility and pleiotropic defects of Sam68 null mice. Using a transcriptome-wide search for splicing targets in the adult brain, we identified T-STAR protein as a potent splicing repressor of the alternatively spliced segment 4 (AS4) exons from each of the Neurexin1-3 genes, and exon 23 of the Stxbp5l gene. T-STAR protein was most highly concentrated in forebrain-derived structures like the hippocampus, which also showed maximal Neurexin1-3 AS4 splicing repression. In the absence of endogenous T-STAR protein, Nrxn1-3 AS4 splicing repression dramatically decreased, despite physiological co-expression of Sam68. In transfected cells Neurexin3 AS4 alternative splicing was regulated by either T-STAR or Sam68 proteins. In contrast, Neurexin2 AS4 splicing was only regulated by T-STAR, through a UWAA-rich response element immediately downstream of the regulated exon conserved since the radiation of bony vertebrates. The AS4 exons in the Nrxn1 and Nrxn3 genes were also associated with distinct patterns of conserved UWAA repeats. Consistent with an ancient mechanism of splicing control, human T-STAR protein was able to repress splicing inclusion of the zebrafish Nrxn3 AS4 exon. Although Neurexin1-3 and Stxbp5l encode critical synaptic proteins, T-STAR null mice had no detectable spatial memory deficits, despite an almost complete absence of AS4 splicing repression in the hippocampus. Our work identifies T-STAR as an ancient and potent tissue-specific splicing regulator that uses a concentration-dependent mechanism to co-ordinately regulate regional splicing patterns of the Neurexin1-3 AS4 exons in the mouse brain., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2013
- Full Text
- View/download PDF
41. Origin of trisomy: no evidence to support the ovarian mosaicism theory.
- Author
-
Morris CR, Haigh S, Cuthbert G, Crosier M, Harding F, and Wolstenholme J
- Subjects
- Chromosomes, Human, Pair 16 genetics, Chromosomes, Human, Pair 22 genetics, DNA Probes, Female, Fetus, Humans, In Situ Hybridization, Fluorescence, Down Syndrome genetics, Mosaicism, Ovary, Trisomy genetics
- Abstract
Objective: Trisomy is the most common type of chromosome abnormality, affecting 4% of clinically recognised pregnancies, of which, trisomies 16, 21 and 22 are the most prevalent. It has been suggested that a large proportion of maternally derived trisomic pregnancies, specifically trisomy 21, are the result of low-level ovarian mosaicism. In this study, we aimed to reproduce these previously published results on trisomy 21 and investigate the other common maternally derived trisomies (i.e. trisomies 16 and 22) by determining chromosome copy number in fetal ovarian and control skin cells., Methods: Ovarian and control skin tissue was collected from eight karyotypically normal female fetuses of between 10 and 14 weeks gestation, which were terminated for social reasons. Tissues were dissociated and fluorescence in situ hybridisation was performed with break-apart probes: CBFβ (16q22), RUNX1 (21q22) and EWSR1 (22q12)., Results: A small number of trisomic cells, 13 out of 51,146 cells examined (0.025%), were identified in both ovarian and control skin samples. Only three of these trisomic cells were present in the fetal ovarian tissue., Conclusion: This study found no evidence of fetal ovarian mosaicism for trisomies 16, 21 and 22., (© 2012 John Wiley & Sons, Ltd and Crown copyright.)
- Published
- 2012
- Full Text
- View/download PDF
42. Improving satisfaction in patients receiving mental health care: a case study.
- Author
-
Crosier M, Scott J, and Steinfeld B
- Subjects
- Continuity of Patient Care, Focus Groups, Humans, Mental Disorders therapy, Mental Health Services organization & administration, Physician-Patient Relations, Washington, Mental Health Services standards, Patient Satisfaction, Quality Improvement
- Abstract
Patient satisfaction is increasingly becoming an important component of quality for behavioral health care systems. The following report describes Group Health Cooperative's Behavioral Health Services department experiences over a 5-year period in moving from uncertainty about the value of patient satisfaction and the ability to positively impact patient ratings to achieving a significant improvement in patient ratings of satisfaction with mental health care. In this process, the Behavioral Health Department developed a deeper understanding of patient requirements and improvement strategies which could impact these requirements. A description of the results achieved along with the role of quality improvement processes in understanding and improving patient satisfaction in mental health care is presented.
- Published
- 2012
- Full Text
- View/download PDF
43. The essential role of centrosomal NDE1 in human cerebral cortex neurogenesis.
- Author
-
Bakircioglu M, Carvalho OP, Khurshid M, Cox JJ, Tuysuz B, Barak T, Yilmaz S, Caglayan O, Dincer A, Nicholas AK, Quarrell O, Springell K, Karbani G, Malik S, Gannon C, Sheridan E, Crosier M, Lisgo SN, Lindsay S, Bilguvar K, Gergely F, Gunel M, and Woods CG
- Subjects
- Animals, Cerebral Cortex growth & development, Child, Preschool, DNA Mutational Analysis, Epithelial Cells metabolism, Exons, Female, Genetic Linkage, HeLa Cells, Homozygote, Humans, Infant, Male, Mice, Microcephaly genetics, Mutation, Neural Stem Cells metabolism, Neurons, Phenotype, Pregnancy, RNA, Messenger genetics, RNA, Messenger metabolism, Transfection, Cell Cycle Proteins genetics, Centrosome metabolism, Cerebral Cortex embryology, Microtubule-Associated Proteins genetics, Neurogenesis
- Abstract
We investigated three families whose offspring had extreme microcephaly at birth and profound mental retardation. Brain scans and postmortem data showed that affected individuals had brains less than 10% of expected size (≤10 standard deviation) and that in addition to a massive reduction in neuron production they displayed partially deficient cortical lamination (microlissencephaly). Other body systems were apparently unaffected and overall growth was normal. We found two distinct homozygous mutations of NDE1, c.83+1G>T (p.Ala29GlnfsX114) in a Turkish family and c.684_685del (p.Pro229TrpfsX85) in two families of Pakistani origin. Using patient cells, we found that c.83+1G>T led to the use of a novel splice site and to a frameshift after NDE1 exon 2. Transfection of tagged NDE1 constructs showed that the c.684_685del mutation resulted in a NDE1 that was unable to localize to the centrosome. By staining a patient-derived cell line that carried the c.83+1G>T mutation, we found that this endogeneously expressed mutated protein equally failed to localize to the centrosome. By examining human and mouse embryonic brains, we determined that NDE1 is highly expressed in neuroepithelial cells of the developing cerebral cortex, particularly at the centrosome. We show that NDE1 accumulates on the mitotic spindle of apical neural precursors in early neurogenesis. Thus, NDE1 deficiency causes both a severe failure of neurogenesis and a deficiency in cortical lamination. Our data further highlight the importance of the centrosome in multiple aspects of neurodevelopment., (Copyright © 2011 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
44. Expression of PLA2G6 in human fetal development: Implications for infantile neuroaxonal dystrophy.
- Author
-
Polster B, Crosier M, Lindsay S, and Hayflick S
- Subjects
- Age Factors, Brain embryology, Brain metabolism, Eye embryology, Eye metabolism, Fetus embryology, Group VI Phospholipases A2 genetics, Humans, Spinal Cord embryology, Spinal Cord metabolism, Fetal Development physiology, Fetus metabolism, Gene Expression Regulation, Developmental physiology, Group VI Phospholipases A2 metabolism
- Abstract
Mutations in PLA2G6, which encodes calcium-independent phospholipase A(2) group VIA (iPLA2-VIA), underlie the autosomal recessive disorder infantile neuroaxonal dystrophy (INAD). INAD typically presents in the first year of life, and leads to optic atrophy and psychomotor regression. We have examined PLA2G6 expression in early human embryonic development by in situ hybridization. At Carnegie Stage (CS) 19 (approximately 7 post-conception weeks [PCW]), strong expression is evident in the ventricular zone (VZ) of midbrain and forebrain suggestive of expression in neural stem and progenitor cells. At CS23 (8PCW) expression is also detectable in the VZ of the hindbrain and the subventricular zone (SVZ) of the developing neocortex, ganglionic eminences and diencephalon. By 9PCW strong expression in the post-mitotic cells of the cortical plate can be seen in the developing neocortex. In the eye, expression is seen in the lens and retina at all stages examined. PLA2G6 expression is also evident in the alar plate of the spinal cord, dorsal root ganglia, the retina and lens in the eye and several non-neuronal tissues, including developing bones, lung, kidney and gut. These findings suggest a role for PLA2G6 in neuronal proliferation throughout the developing brain and in maturing neurons in the cortical plate and hindbrain. Although widespread PLA2G6 expression is detected in neuronal tissues, the pattern shows dynamic changes with time and indicates that INAD pathogenesis may begin prior to birth., (2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
45. The nystagmus-associated FRMD7 gene regulates neuronal outgrowth and development.
- Author
-
Betts-Henderson J, Bartesaghi S, Crosier M, Lindsay S, Chen HL, Salomoni P, Gottlob I, and Nicotera P
- Subjects
- Animals, Brain cytology, Brain embryology, Brain metabolism, Cell Differentiation, Cell Line, Tumor, Cells, Cultured, Cytoskeletal Proteins metabolism, Disease Models, Animal, Embryo, Mammalian, Gene Expression Regulation, Developmental, Humans, Membrane Proteins metabolism, Mice, Neurons metabolism, Nystagmus, Congenital genetics, Brain growth & development, Cytoskeletal Proteins genetics, Membrane Proteins genetics, Neurons cytology, Nystagmus, Congenital metabolism
- Abstract
Mutations in the gene encoding FERM domain-containing 7 protein (FRMD7) are recognized as an important cause of X-linked idiopathic infantile nystagmus (IIN). However, the precise role of FRMD7 and its involvement in the pathogenesis of IIN are not understood. In the present study, we have explored the role of FRMD7 in neuronal development. Using in situ hybridization and immunohistochemistry, we reveal that FRMD7 expression is spatially and temporally regulated in both the human and mouse brain during embryonic and fetal development. Furthermore, we show that FRMD7 expression is up-regulated upon retinoic acid (RA)-induced differentiation of mouse neuroblastoma NEURO2A cells, suggesting FRMD7 may play a role in this process. Indeed, we demonstrate, for the first time, that knockdown of FRMD7 during neuronal differentiation results in altered neurite development. Taken together, our data suggest that FRMD7 is involved in multiple aspects of neuronal development, and have direct importance to further understanding the pathogenesis of IIN.
- Published
- 2010
- Full Text
- View/download PDF
46. A truncating mutation of TRAPPC9 is associated with autosomal-recessive intellectual disability and postnatal microcephaly.
- Author
-
Mochida GH, Mahajnah M, Hill AD, Basel-Vanagaite L, Gleason D, Hill RS, Bodell A, Crosier M, Straussberg R, and Walsh CA
- Subjects
- Animals, Brain metabolism, Chromosome Mapping, Consanguinity, Gene Expression Regulation, Developmental, Genes, Recessive, Homozygote, Humans, Intercellular Signaling Peptides and Proteins, Magnetic Resonance Imaging methods, Mice, Mitosis, NF-kappa B genetics, Neurons metabolism, Carrier Proteins genetics, Carrier Proteins physiology, Intellectual Disability genetics, Microcephaly genetics, Mutation
- Abstract
Although autosomal genes are increasingly recognized as important causes of intellectual disability, very few of them are known. We identified a genetic locus for autosomal-recessive nonsyndromic intellectual disability associated with variable postnatal microcephaly through homozygosity mapping of a consanguineous Israeli Arab family. Sequence analysis of genes in the candidate interval identified a nonsense nucleotide change in the gene that encodes TRAPPC9 (trafficking protein particle complex 9, also known as NIBP), which has been implicated in NF-kappaB activation and possibly in intracellular protein trafficking. TRAPPC9 is highly expressed in the postmitotic neurons of the cerebral cortex, and MRI analysis of affected patients shows defects in axonal connectivity. This suggests essential roles of TRAPPC9 in human brain development, possibly through its effect on NF-kappaB activation and protein trafficking in the postmitotic neurons of the cerebral cortex.
- Published
- 2009
- Full Text
- View/download PDF
47. Are comparisons of consumer satisfaction with providers biased by nonresponse or case-mix differences?
- Author
-
Simon G, Rutter C, Crosier M, Scott J, Operskalski BH, and Ludman E
- Subjects
- Adult, Female, Health Care Surveys, Humans, Idaho, Male, Mental Health Services, Middle Aged, Washington, Bias, Consumer Behavior, Diagnosis-Related Groups, Health Personnel
- Abstract
Objective: This study examined how consumer satisfaction ratings differ between mental health care providers to determine whether comparison of ratings is biased by differences in survey response rates or consumer characteristics., Methods: Consumer satisfaction surveys mailed by a mixed-model prepaid health plan were examined. Survey data were linked to computerized records regarding consumers' demographic (age, sex, and type of insurance coverage) and clinical (primary diagnosis and initial versus return visit) characteristics. Statistical models examined probabilities of returning the survey (N=8,025 returned surveys) and of giving an excellent satisfaction rating. Variability was separated into within-provider effects and between-provider effects., Results: The overall response rate was 33.8%, and 49.9% of responders reported excellent satisfaction. Neither response rate nor satisfaction rating was related to primary diagnosis. Within the practices of individual providers, response rate and receiving an excellent rating were significantly associated with female sex, older age, longer enrollment in the health plan, and making a return visit. Analyses of between-provider effects, however, found that only a higher proportion of return visitors was significantly associated with higher response rates and higher satisfaction ratings., Conclusions: There was little evidence that differences in response rate or in consumers served biased comparison of satisfaction ratings between mental health providers. Bias might be greater in a setting with more heterogeneous consumers or providers. Returning consumers gave higher ratings than first-time visitors, and analyses of satisfaction ratings may need to account for this difference. Extremely high or low ratings should be interpreted cautiously, especially for providers with a small number of surveys.
- Published
- 2009
- Full Text
- View/download PDF
48. Personality assessment in today's health care environment: therapeutic alliance and patient satisfaction.
- Author
-
Quirk MP, Erdberg P, Crosier M, and Steinfeld B
- Subjects
- Humans, Psychiatric Status Rating Scales, Psychotherapy, Brief methods, Severity of Illness Index, Treatment Outcome, Mental Disorders diagnosis, Mental Disorders therapy, Patient Satisfaction, Personality Assessment, Professional-Patient Relations
- Abstract
This article addresses the role of personality assessment-specifically the Rorschach (Exner, 2002)-]in the context of the health care industry's increased focus on patient satisfaction. When providing psychotherapy, a challenge to providing patient-centered care turns on understanding and acting on the key aspects of the patient's personality that are crucial to forming an effective alliance. This article includes a description and examples of how personality assessment can enhance therapists' understanding of the ideational, affective, and self-control aspects of complicated patients' problem-solving styles. This enhanced understanding in turn can lead to improved therapeutic alliance between therapists and patients and to increased patient satisfaction with their care. How to provide feedback to the therapist also is addressed.
- Published
- 2007
- Full Text
- View/download PDF
49. Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p.
- Author
-
Guy J, Hearn T, Crosier M, Mudge J, Viggiano L, Koczan D, Thiesen HJ, Bailey JA, Horvath JE, Eichler EE, Earthrowl ME, Deloukas P, French L, Rogers J, Bentley D, and Jackson MS
- Subjects
- Amino Acid Sequence genetics, Animals, Callithrix genetics, Chromosomes, Human, Pair 7 genetics, Contig Mapping methods, Dolphins, Evolution, Molecular, Gene Duplication, Humans, Lorisidae, Molecular Sequence Data, Pseudogenes genetics, Repressor Proteins genetics, Species Specificity, Swine, Telomere genetics, Zinc Fingers genetics, Centromere genetics, Chromosomes, Human, Pair 10 genetics, DNA, Satellite genetics, Gene Expression Profiling methods, Genes genetics
- Abstract
Contiguous finished sequence from highly duplicated pericentromeric regions of human chromosomes is needed if we are to understand the role of pericentromeric instability in disease, and in gene and karyotype evolution. Here, we have constructed a BAC contig spanning the transition from pericentromeric satellites to genes on the short arm of human chromosome 10, and used this to generate 1.4 Mb of finished genomic sequence. Combining RT-PCR, in silico gene prediction, and paralogy analysis, we can identify two domains within the sequence. The proximal 600 kb consists of satellite-rich pericentromerically duplicated DNA which is transcript poor, containing only three unspliced transcripts. In contrast, the distal 850 kb contains four known genes (ZNF248, ZNF25, ZNF33A, and ZNF37A) and up to 32 additional transcripts of unknown function. This distal region also contains seven out of the eight intrachromosomal duplications within the sequence, including the p arm copy of the approximately 250-kb duplication which gave rise to ZNF33A and ZNF33B. By sequencing orthologs of the duplicated ZNF33 genes we have established that ZNF33A has diverged significantly at residues critical for DNA binding but ZNF33B has not, indicating that ZNF33B has remained constrained by selection for ancestral gene function. These results provide further evidence of gene formation within intrachromosomal duplications, but indicate that recent interchromosomal duplications at this centromere have involved transcriptionally inert, satellite rich DNA, which is likely to be heterochromatic. This suggests that any novel gene structures formed by these interchromosomal events would require relocation to a more open chromatin environment to be expressed.
- Published
- 2003
- Full Text
- View/download PDF
50. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms.
- Author
-
Crosier M, Viggiano L, Guy J, Misceo D, Stones R, Wei W, Hearn T, Ventura M, Archidiacono N, Rocchi M, and Jackson MS
- Subjects
- Animals, Chromosome Inversion, Chromosomes, Human, Pair 10 genetics, Evolution, Molecular, Expressed Sequence Tags, Genetic Linkage genetics, Humans, Macaca mulatta, Models, Genetic, Molecular Sequence Data, Pan troglodytes, Physical Chromosome Mapping, Pongo pygmaeus, Pseudogenes genetics, X Chromosome genetics, Centromere genetics, Gene Duplication
- Abstract
KIAA0187 is a gene of unknown function that maps to 10q11 and has been subject to recent duplication events. Here we analyze 18 human paralogs of this gene and show that paralogs of exons 14-23 were formed through satellite-associated pericentromeric-directed duplication, whereas paralogs of exons 1-9 were created via chromosome-specific satellite-independent duplications. In silico, Northern, and RT-PCR analyses indicate that nine paralogs are transcribed, including four in which KIAA0187 exons are spliced onto novel sequences. Despite this, no new genes appear to have been created by these events. The chromosome 10 paralogs map to 10q11, 10q22, 10q23.1, and 10q23.3, forming part of a complex family of chromosome-specific repeats that includes GLUD1, Cathepsin L, and KIAA1099 pseudogenes. Phylogenetic analyses and comparative FISH indicates that the 10q23.1 and 10q23.3 repeats were created in 10q11 and relocated by a paracentric inversion 13 to 27 Myr ago. Furthermore, the most recent duplications, involving the KIAA1099 pseudogenes, have largely been confined to 10q11. These results indicate a simple model for the evolution of this repeat family, involving multiple rounds of centromere-proximal duplication and dispersal through intrachromosomal rearrangement. However, more complex events must be invoked to account for high sequence identity between some paralogs.
- Published
- 2002
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.