50 results on '"Croes, L."'
Search Results
2. 112P Close cardiovascular monitoring during the early stages of treatment for patients receiving immune checkpoint inhibitors
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Delombaerde, D.L., primary, Vulsteke, C., additional, Van de Veire, N., additional, Vervloet, D., additional, Moerman, V., additional, van Calster, L., additional, Croes, L., additional, Gremonprez, F., additional, De Meulenaere, A.M., additional, Kraemer, X. Elzo, additional, Wouters, K., additional, Peeters, M., additional, Prenen, H., additional, and De Sutter, J., additional
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- 2023
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3. 114P Real-world insights on pan-cancer immune checkpoint inhibitor treatment: Initial findings of a Belgian multicenter study
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Verbiest, A.T.L., primary, Delombaerde, D.L., additional, Verhaert, M., additional, Tack, L., additional, Oeste, C.L., additional, Cool, L., additional, Croes, L., additional, Bassez, I., additional, Hens, D.F.E., additional, Franssen, C., additional, Aspeslagh, S., additional, Geldhof, V., additional, Debruyne, P.R., additional, and Vulsteke, C., additional
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- 2023
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4. P038 Early detection of breast cancer in liquid biopsies using DNA methylation markers
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Neefs, I., primary, Tjalma, W., additional, Ibrahim, J., additional, Croes, L., additional, Peeters, M., additional, Van Camp, G., additional, and de Beeck, K. Op, additional
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- 2023
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5. 1056P Real-world usage and adverse events (AE) of immune checkpoint inhibitors (ICI): A large-scale, automated, GDPR-compliant analysis of hospital records
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Verbiest, A.T.L., Debruyne, P.R., Bassez, I., Delombaerde, D.L., Tack, L., Oeste, C.L., Deckx, L., Croes, L., Hens, D.F.E., Geldhof, V., Prenen, H., and Vulsteke, C.
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- 2024
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6. 1048P Cardiovascular toxicities in cancer patients treated with immune checkpoint inhibitors: Evidence from a Belgian real-world multicenter study
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Delombaerde, D.L., Oeste, C.L., Verbiest, A.T.L., Tack, L., Croes, L., Bassez, I., Hens, D.F.E., Franssen, C., Debruyne, P.R., Prenen, H., De Sutter, J., and Vulsteke, C.
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- 2024
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7. Comparison of S1 antibody titers between BNT162b2 and ChAdOx1 COVID-19 vaccination in cancer patients
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van Dam, P.A., Debie, Y., Teuwen, L., Verbruggen, L., Vanhoutte, G., Peeters, B., Croes, L., Vulsteke, C., Anguille, S., Vandamme, T., and Peeters, M.
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- 2022
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8. 36P Alterations in tumour-promoting cytokines in cancer patients after SARS-CoV-2 infection
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De Winter, F.H., primary, Hotterbeekx, A., additional, Huizing, M., additional, Konnova, A., additional, Jongers, B. 's, additional, Jairam, R.K., additional, Moons, P., additional, Roelant, E., additional, Le Blon, D., additional, Vanden Berghe, W., additional, Janssens, A., additional, Lybaert, W., additional, Croes, L., additional, Vulsteke, C., additional, Malhotra-Kumar, S., additional, Goossens, H., additional, Berneman, Z., additional, Peeters, M., additional, Van Dam, P., additional, and Kumar-Singh, S., additional
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- 2021
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9. A Nursing Minimum Data Set in Production : Facilities and Training
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Delesie, L., Croes, L., Sermeus, W., Tanghe, A., Vanden Boer, G., Vanlanduyt, J., Rienhoff, O., editor, Lindberg, D. A. B., editor, Adlassnig, Klaus-Peter, editor, Grabner, Georg, editor, Bengtsson, Stellan, editor, and Hansen, Rolf, editor
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- 1991
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10. JARID2 haploinsufficiency is associated with a clinically distinct neurodevelopmental syndrome
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Verberne, E.A., Goh, S., England, J., Ginkel, M. van, Rafael-Croes, L., Maas, S., Polstra, A., Zarate, Y.A., Bosanko, K.A., Pechter, K.B., Bedoukian, E., Izumi, K., Chaudhry, A., Robin, N.H., Boothe, M., Lippa, N.C., Aggarwal, V., Vivo, D.C. De, Lehman, A., Study, C., Stockler, S., Bruel, A.L., Isidor, B., Lemons, J., Rodriguez-Buritica, D.F., Richmond, C.M., Stark, Z., Agrawal, P.B., Kooy, R.F., Meuwissen, M.E.C., Koolen, D.A., Pfundt, R.P., Lieden, A., Anderlid, B.M., Glatz, D., Mannens, M., Bakshi, M., Mallette, F.A., Haelst, M.M. van, Campeau, P.M., Verberne, E.A., Goh, S., England, J., Ginkel, M. van, Rafael-Croes, L., Maas, S., Polstra, A., Zarate, Y.A., Bosanko, K.A., Pechter, K.B., Bedoukian, E., Izumi, K., Chaudhry, A., Robin, N.H., Boothe, M., Lippa, N.C., Aggarwal, V., Vivo, D.C. De, Lehman, A., Study, C., Stockler, S., Bruel, A.L., Isidor, B., Lemons, J., Rodriguez-Buritica, D.F., Richmond, C.M., Stark, Z., Agrawal, P.B., Kooy, R.F., Meuwissen, M.E.C., Koolen, D.A., Pfundt, R.P., Lieden, A., Anderlid, B.M., Glatz, D., Mannens, M., Bakshi, M., Mallette, F.A., Haelst, M.M. van, and Campeau, P.M.
- Abstract
Item does not contain fulltext, PURPOSE: JARID2, located on chromosome 6p22.3, is a regulator of histone methyltransferase complexes that is expressed in human neurons. So far, 13 individuals sharing clinical features including intellectual disability (ID) were reported with de novo heterozygous deletions in 6p22-p24 encompassing the full length JARID2 gene (OMIM 601594). However, all published individuals to date have a deletion of at least one other adjoining gene, making it difficult to determine if JARID2 is the critical gene responsible for the shared features. We aim to confirm JARID2 as a human disease gene and further elucidate the associated clinical phenotype. METHODS: Chromosome microarray analysis, exome sequencing, and an online matching platform (GeneMatcher) were used to identify individuals with single-nucleotide variants or deletions involving JARID2. RESULTS: We report 16 individuals in 15 families with a deletion or single-nucleotide variant in JARID2. Several of these variants are likely to result in haploinsufficiency due to nonsense-mediated messenger RNA (mRNA) decay. All individuals have developmental delay and/or ID and share some overlapping clinical characteristics such as facial features with those who have larger deletions involving JARID2. CONCLUSION: We report that JARID2 haploinsufficiency leads to a clinically distinct neurodevelopmental syndrome, thus establishing gene-disease validity for the purpose of diagnostic reporting.
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- 2021
11. 2184TiP Extensive cardiovascular characterization and follow-up of patients receiving immune checkpoint inhibitors: A prospective multicenter study
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Delombaerde, D.L., De Sutter, J., Croes, L., Vervloet, D., Moerman, V., Van de Veire, N., Willems, A-M., Wouters, K., Peeters, M., Prenen, H., and Vulsteke, C.
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- 2023
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12. 1666P Lower virus neutralizing titers against SARS-CoV-2 Omicron strain after third dose BNT162b2 following primo-vaccination with ChAdOx1 versus BNT162b2 in cancer patients
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Debie, Y., Van Audenaerde, J., Vandamme, T., Croes, L., Teuwen, L-A.M.N., Verbruggen, L., Vanhoutte, G., Marcq, E., Le Blon, D., Peeters, B., M.E. Goossens, Arien, K., Anguille, S., Smits, E., Vulsteke, C., Lion, E., Peeters, M., and van Dam, P.A.
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- 2022
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13. Metabolism of amino acid amides in Pseudomonas putida ATCC 12633
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Hermes, H. F. M., Croes, L. M., Peeters, W. P. H., Peters, P. J. H., and Dijkhuizen, L.
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- 1993
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14. Behavior of unreinforced concrete-to-concrete interfaces under shear loading
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Croes, L. and Croes, L.
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- 2019
15. Regulation of methanol oxidation and carbon dioxide fixation in Xanthobacter strain 25a grown in continuous culture
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Croes, L. M., Meijer, W. G., and Dijkhuizen, L.
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- 1991
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16. Characterization of Xanthobacter strains H4-14 and 25a and enzyme profiles after growth under autotrophic and heterotrophic conditions
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Meijer, W. G., Croes, L. M., Jenni, B., Lehmicke, L. G., Lidstrom, M. E., and Dijkhuizen, L.
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- 1990
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17. The Feedback Programme for Nursing Minimal Data Set Registration
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Delesie, L., primary, Vanlanduyt, J., additional, Tanghe, A., additional, Sermeus, W., additional, Vanden Boer, G., additional, and Croes, L., additional
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- 1991
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18. A Nursing Minimum Data Set in Production
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Delesie, L., primary, Croes, L., additional, Sermeus, W., additional, Tanghe, A., additional, Vanden Boer, G., additional, and Vanlanduyt, J., additional
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- 1991
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19. The Feedback Programme for Nursing Minimal Data Set Registration
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Delesie, L., Vanlanduyt, J., Tanghe, A., Sermeus, W., Vanden Boer, G., Croes, L., Rienhoff, O., editor, Lindberg, D. A. B., editor, Adlassnig, Klaus-Peter, editor, Grabner, Georg, editor, Bengtsson, Stellan, editor, and Hansen, Rolf, editor
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- 1991
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20. Operations research and knowledge discovery: a data mining method applied to health care management
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Delesie, L. and Croes, L.
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- 2000
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21. PO-367 DFNA5 methylation: a potential biomarker for breast cancer, on the basis of a large scale analysis in TCGA
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Croes, L., primary, Beyens, M., additional, Fransen, E., additional, Ibrahim, J., additional, Berghe, W. Vanden, additional, Suls, A., additional, Peeters, M., additional, Pauwels, P., additional, Camp, G. Van, additional, and Op de Beeck, K., additional
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- 2018
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22. Role of DFNA5 in hearing loss and cancer – a comment on Rakusic et al
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Croes L, Op de Beeck K, and Van Camp G
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otorhinolaryngologic diseases ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 - Abstract
Lieselot Croes,1,2 Ken Op de Beeck,1,2 Guy Van Camp1 1Center of Medical Genetics (CMG), Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium; 2Center for Oncological Research (CORE), Department of Medicine, University of Antwerp, Antwerp, BelgiumWe would like to comment on the paper published by Rakusic et al about sudden bilateral hearing loss in gastric cancer as the only symptom of disease.1 The authors state that “Inactivated DFNA5, otherwise described in hereditary bilateral deafness, perhaps favors the development of deafness in patients with gastric cancer”.1 We believe this conclusion is erroneous. Although DFNA5 has been implicated in both hearing loss and cancer, the underlying molecular mechanisms are different and completely opposite (Figure 1).View original article by Rakusic et al 
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- 2015
23. Large scale DFNA5 methylation and expression analysis in primary breast adenocarcinoma using data from the Cancer Genome Atlas
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Croes, L., primary, Beyens, M., additional, Franssen, E., additional, Goepfert, A., additional, Peeters, M., additional, Pauwels, P., additional, Van Camp, G., additional, and Op De Beeck, K., additional
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- 2016
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24. Regulation of methylamine and formaldehyde metabolism in Arthrobacter P1: Formaldehyde is the inducing signal for the synthesis of the RuMP cycle enzyme hexulose phosphate synthase
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Levering, P. R., Croes, L. M., and Dijkhuizen, L.
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- 1986
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25. Regulation of methylamine and formaldehyde metabolism in Arthrobacter P1: Effect of pulse-wise addition of “heterotrophic” substrates to C1 substrate-limited continuous cultures
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Levering, P. R., Croes, L. M., Tiesma, L., and Dijkhuizen, L.
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- 1986
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26. DFNA5 Methylation: A Potential Biomarker for Breast Cancer?
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Croes, L., primary, Op De Beeck, K., additional, Lardon, F., additional, Pauwels, P., additional, Peeters, M., additional, and Van Camp, G., additional
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- 2014
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27. 46P - DFNA5 Methylation: A Potential Biomarker for Breast Cancer?
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Croes, L., Op De Beeck, K., Lardon, F., Pauwels, P., Peeters, M., and Van Camp, G.
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- 2014
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28. Regulation of methanol oxidation and carbon dioxide fixation in Xanthobacterstrain 25a grown in continuous culture
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Croes, L., Meijer, W., and Dijkhuizen, L.
- Abstract
The regulation of C1-metabolism in Xanthobacterstrain 25a was studied during growth of the organism on acetate, formate and methanol in chemostat cultures. No activity of methanol dehydrogenase (MDH), formate dehydrogenase (FDS) or ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisC/O) could be detected in cells grown on acetate alone over a range of dilution rates tested. Addition of methanol or formate to the feed resulted in the immediate induction of MDH and FDH and complete utilization (D=0.10 h-1) of acetate and the C1-substrates. The activities of these enzymes rapidly dropped at the higher growth rates, which suggests that their synthesis is further controlled via repression by “heterotrophic” substrates such as acetate. Synthesis of RuBisC/O already occurred at low methanol concentrations in the feed, resulting in additive growth yields on acetate/methanol mixtures. The energy generated in the oxidation of formate initially allowed an increased assimilation of acetate (and a decreased dissimilation), resulting in enhanced growth yields on the mixture. RuBisC/O activity could only be detected at the higher formate/acetate ratios in the feed. The data suggest that synthesis of RuBisC/O and CO2fixation via the Calvin cycle in Xanthobacterstrain 25 a is controlled via a (de)repression mechanism, as is the case in other facultatively autotrophic bacteria. Autotrophic CO2fixation only occurs under conditions with a diminished supply of “heterotrophic” carbon sources and a sufficiently high availability of suitable energy sources. The latter point is further supported by the clearly more pronounced derepressing effect exerted by methanol compared to formate.
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- 1991
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29. Discussion of “Outland on Open Flumes”
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Outland, Gilbert W., primary, Silberman, Edward, additional, Anderson, Alvin G., additional, and Croes, L. O., additional
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- 1950
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30. Close Cardiovascular Monitoring during the Early Stages of Treatment for Patients Receiving Immune Checkpoint Inhibitors.
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Delombaerde D, Vulsteke C, Van de Veire N, Vervloet D, Moerman V, Van Calster L, Willems AM, Croes L, Gremonprez F, De Meulenaere A, Elzo Kraemer X, Wouters K, Peeters M, Prenen H, and De Sutter J
- Abstract
Background: There is an unmet medical need for the early detection of immune checkpoint inhibitor (ICI)-induced cardiovascular (CV) adverse events due to a lack of adequate biomarkers. This study aimed to provide insights on the incidence of troponin elevations and echocardiographic dynamics during ICI treatment in cancer patients and their role as potential biomarkers for submyocardial damage. In addition, it is the first study to compare hs-TnT and hs-TnI in ICI-treated patients and to evaluate their interchangeability in the context of screening. Results: Among 59 patients, the mean patient age was 68 years, and 76% were men. Overall, 25% of patients received combination therapy. Although 10.6% [95% CI: 5.0-22.5] of the patients developed troponin elevations, none experienced a CV event. No significant changes were found in 3D left ventricular (LV) ejection fraction nor in global longitudinal strain f (56 ± 6% vs. 56 ± 6%, p = 0.903 and -17.8% [-18.5; -14.2] vs. -17.0% [-18.8; -15.1], p = 0.663) at 3 months. There were also no significant changes in diastolic function and right ventricular function. In addition, there was poor agreement between hs-TnT and hs-TnI. Methods: Here, we present a preliminary analysis of the first 59 patients included in our ongoing prospective clinical trial (NCT05699915) during the first three months of treatment. All patients underwent electrocardiography and echocardiography along with blood sampling at standardized time intervals. This study aimed to investigate the incidence of elevated hs-TnT levels within the first three months of ICI treatment. Elevations were defined as hs-TnT above the upper limit of normal (ULN) if the baseline value was normal, or 1.5 ≥ times baseline if the baseline value was above the ULN. Conclusions: Hs-TnT elevations occurred in 10.6% of the patients. However, no significant changes were found on 3D echocardiography, nor did any of the patients develop a CV event. There were also no changes found in NT-proBNP. The study is still ongoing, but these preliminary findings do not show a promising role for cardiac troponins nor for echocardiographic dynamics in the prediction of CV events during the early stages of ICI treatment.
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- 2024
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31. Intermediate Molecular Phenotypes to Identify Genetic Markers of Anthracycline-Induced Cardiotoxicity Risk.
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Gómez-Vecino A, Corchado-Cobos R, Blanco-Gómez A, García-Sancha N, Castillo-Lluva S, Martín-García A, Mendiburu-Eliçabe M, Prieto C, Ruiz-Pinto S, Pita G, Velasco-Ruiz A, Patino-Alonso C, Galindo-Villardón P, Vera-Pedrosa ML, Jalife J, Mao JH, Macías de Plasencia G, Castellanos-Martín A, Sáez-Freire MDM, Fraile-Martín S, Rodrigues-Teixeira T, García-Macías C, Galvis-Jiménez JM, García-Sánchez A, Isidoro-García M, Fuentes M, García-Cenador MB, García-Criado FJ, García-Hernández JL, Hernández-García MÁ, Cruz-Hernández JJ, Rodríguez-Sánchez CA, García-Sancho AM, Pérez-López E, Pérez-Martínez A, Gutiérrez-Larraya F, Cartón AJ, García-Sáenz JÁ, Patiño-García A, Martín M, Alonso-Gordoa T, Vulsteke C, Croes L, Hatse S, Van Brussel T, Lambrechts D, Wildiers H, Chang H, Holgado-Madruga M, González-Neira A, Sánchez PL, and Pérez Losada J
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- Female, Animals, Mice, Anthracyclines adverse effects, Genetic Markers, Antibiotics, Antineoplastic therapeutic use, Phenotype, Cardiotoxicity etiology, Neoplasms drug therapy
- Abstract
Cardiotoxicity due to anthracyclines (CDA) affects cancer patients, but we cannot predict who may suffer from this complication. CDA is a complex trait with a polygenic component that is mainly unidentified. We propose that levels of intermediate molecular phenotypes (IMPs) in the myocardium associated with histopathological damage could explain CDA susceptibility, so variants of genes encoding these IMPs could identify patients susceptible to this complication. Thus, a genetically heterogeneous cohort of mice ( n = 165) generated by backcrossing were treated with doxorubicin and docetaxel. We quantified heart fibrosis using an Ariol slide scanner and intramyocardial levels of IMPs using multiplex bead arrays and QPCR. We identified quantitative trait loci linked to IMPs (ipQTLs) and cdaQTLs via linkage analysis. In three cancer patient cohorts, CDA was quantified using echocardiography or Cardiac Magnetic Resonance. CDA behaves as a complex trait in the mouse cohort. IMP levels in the myocardium were associated with CDA. ipQTLs integrated into genetic models with cdaQTLs account for more CDA phenotypic variation than that explained by cda-QTLs alone. Allelic forms of genes encoding IMPs associated with CDA in mice, including AKT1, MAPK14, MAPK8, STAT3, CAS3, and TP53, are genetic determinants of CDA in patients. Two genetic risk scores for pediatric patients ( n = 71) and women with breast cancer ( n = 420) were generated using machine-learning Least Absolute Shrinkage and Selection Operator (LASSO) regression. Thus, IMPs associated with heart damage identify genetic markers of CDA risk, thereby allowing more personalized patient management.
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- 2023
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32. Extensive CArdioVAscular Characterization and Follow-Up of Patients Receiving Immune Checkpoint Inhibitors: A Prospective Multicenter Study.
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Delombaerde D, De Sutter J, Croes L, Vervloet D, Moerman V, Van de Veire N, Willems AM, Wouters K, Peeters M, Prenen H, and Vulsteke C
- Abstract
Background: The increasing use of immune checkpoint inhibitors (ICIs) in the treatment of both advanced and early stages of various malignancies has resulted in a substantial increase in the incidence of cardiovascular (CV) immune-related adverse events (irAEs). The current follow-up guidelines are based on anecdotal evidence and expert opinions, due to a lack of solid data and prospective studies. As many questions remain unanswered, cardiac monitoring, in patients receiving ICIs, is not always implemented by oncologists. Hence, an urgent need to investigate the possible short- and long-term CV effects of ICIs, as ICI approval is continuing to expand to the (neo)adjuvant setting., Methods: We have initiated a prospective, multicenter study, i.e., the CAVACI trial, in which a minimum of 276 patients with a solid tumor, eligible for ICI treatment, will be enrolled. The study consists of routine investigations of blood parameters (troponin and N-terminal pro-B-type natriuretic peptide (NT-proBNP) levels, in particular) and a thorough CV follow-up (electrocardiograms, transthoracic echocardiograms, and coronary calcium scoring) at fixed time points for a total period of two years. The primary endpoint is the cumulative incidence of troponin elevation in the first three months of ICI treatment, compared to baseline levels. Furthermore, secondary endpoints include incidence above the upper limit of normal of both troponin and NT-proBNP levels, evolution in troponin and NT-proBNP levels, the incidence of CV abnormalities/major adverse cardiac events, evaluation of associations between patient characteristics/biochemical parameters and CV events, transthoracic echocardiography parameters, electrocardiography parameters, and progression of coronary atherosclerosis. Recruitment of patients started in January 2022. Enrolment is ongoing in AZ Maria Middelares, Antwerp University Hospital, AZ Sint-Vincentius Deinze, and AZ Sint-Elisabeth Zottegem., Trial Registration: ClinicalTrials.gov Identifier: NCT05699915, registered 26 January 2023.
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- 2023
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33. First Evidence of Activity of Enfortumab Vedotin on Brain Metastases in Urothelial Cancer Patients.
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Vulsteke C, De Cocker L, Gómez de Liaño A, Montesdeoca C, De Meulenaere A, Croes L, Delombaerde D, Szabados B, and Powles T
- Abstract
Enfortumab vedotin (EV), an antibody-drug conjugate directed against Nectin-4, significantly prolonged survival compared to standard chemotherapy in patients with locally advanced or metastatic urothelial carcinoma who previously received platinum-based chemotherapy and a PD-1 or PD-L1 inhibitor. The overall response rate in the phase 3 EV301 trial leading to approval was 40.6%. However, no data have been published yet regarding the effect of EV on brain metastases. Here, we present three patients from different centers with brain metastases receiving EV. A 58-year-old white male patient, who had been heavily pretreated for urothelial carcinoma with visceral metastases and a solitary clinically active brain metastasis, started on EV 1.25 mg/kg on days 1, 8, and 15 of a 28-day cycle. After three cycles, the first evaluation showed a partial remission by RECIST v1.1, with a near complete response on the brain metastasis and disappearance of neurological symptoms. The patient is currently still receiving EV. A second, 74-year-old male patient started on the same regimen, after previous progression on platinum-based chemotherapy and avelumab in maintenance. The patient achieved a complete response and received therapy for five months. Nevertheless, therapy was discontinued at the patient's request. Shortly after, he developed new leptomeningeal metastases. Upon rechallenge with EV, there was a significant reduction in the diffuse meningeal infiltration. A third, 50-year-old white male patient also received EV after previous progression on cisplatin-gemcitabine and atezolizumab maintenance, followed by palliative whole-brain radiotherapy and two cycles of vinflunine. After three cycles of EV, there was a significant reduction in the brain metastases. The patient is currently still receiving EV. These are the first reports on the efficacy of EV in patients with urothelial carcinoma and active brain metastases.
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- 2023
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34. Humoral and Cellular Immune Responses against SARS-CoV-2 after Third Dose BNT162b2 following Double-Dose Vaccination with BNT162b2 versus ChAdOx1 in Patients with Cancer.
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Debie Y, Van Audenaerde JRM, Vandamme T, Croes L, Teuwen LA, Verbruggen L, Vanhoutte G, Marcq E, Verheggen L, Le Blon D, Peeters B, Goossens ME, Pannus P, Ariën KK, Anguille S, Janssens A, Prenen H, Smits ELJ, Vulsteke C, Lion E, Peeters M, and van Dam PA
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- Humans, Antibodies, Viral, BNT162 Vaccine, COVID-19 Vaccines, Immunity, Cellular, Immunoglobulin G, Prospective Studies, SARS-CoV-2, Vaccination, COVID-19 prevention & control, Neoplasms therapy
- Abstract
Purpose: Patients with cancer display reduced humoral responses after double-dose COVID-19 vaccination, whereas their cellular response is more comparable with that in healthy individuals. Recent studies demonstrated that a third vaccination dose boosts these immune responses, both in healthy people and patients with cancer. Because of the availability of many different COVID-19 vaccines, many people have been boosted with a different vaccine from the one used for double-dose vaccination. Data on such alternative vaccination schedules are scarce. This prospective study compares a third dose of BNT162b2 after double-dose BNT162b2 (homologous) versus ChAdOx1 (heterologous) vaccination in patients with cancer., Experimental Design: A total of 442 subjects (315 patients and 127 healthy) received a third dose of BNT162b2 (230 homologous vs. 212 heterologous). Vaccine-induced adverse events (AE) were captured up to 7 days after vaccination. Humoral immunity was assessed by SARS-CoV-2 anti-S1 IgG antibody levels and SARS-CoV-2 50% neutralization titers (NT50) against Wuhan and BA.1 Omicron strains. Cellular immunity was examined by analyzing CD4+ and CD8+ T-cell responses against SARS-CoV-2-specific S1 and S2 peptides., Results: Local AEs were more common after heterologous boosting. SARS-CoV-2 anti-S1 IgG antibody levels did not differ significantly between homologous and heterologous boosted subjects [GMT 1,755.90 BAU/mL (95% CI, 1,276.95-2,414.48) vs. 1,495.82 BAU/mL (95% CI, 1,131.48-1,977.46)]. However, homologous-boosted subjects show significantly higher NT50 values against BA.1 Omicron. Subjects receiving heterologous boosting demonstrated increased spike-specific CD8+ T cells, including higher IFNγ and TNFα levels., Conclusions: In patients with cancer who received double-dose ChAdOx1, a third heterologous dose of BNT162b2 was able to close the gap in antibody response., (©2022 American Association for Cancer Research.)
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- 2023
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35. DNA Methylation Signature for JARID2 -Neurodevelopmental Syndrome.
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Verberne EA, van der Laan L, Haghshenas S, Rooney K, Levy MA, Alders M, Maas SM, Jansen S, Lieden A, Anderlid BM, Rafael-Croes L, Campeau PM, Chaudhry A, Koolen DA, Pfundt R, Hurst ACE, Tran-Mau-Them F, Bruel AL, Lambert L, Isidor B, Mannens MMAM, Sadikovic B, Henneman P, and van Haelst MM
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- Humans, Nucleotide Motifs, Phenotype, Protein Processing, Post-Translational, Syndrome, DNA Methylation, Polycomb Repressive Complex 2 genetics
- Abstract
JARID2 (Jumonji, AT Rich Interactive Domain 2) pathogenic variants cause a neurodevelopmental syndrome, that is characterized by developmental delay, cognitive impairment, hypotonia, autistic features, behavior abnormalities and dysmorphic facial features. JARID2 encodes a transcriptional repressor protein that regulates the activity of various histone methyltransferase complexes. However, the molecular etiology is not fully understood, and JARID2 -neurodevelopmental syndrome may vary in its typical clinical phenotype. In addition, the detection of variants of uncertain significance (VUSs) often results in a delay of final diagnosis which could hamper the appropriate care. In this study we aim to detect a specific and sensitive DNA methylation signature for JARID2 -neurodevelopmental syndrome. Peripheral blood DNA methylation profiles from 56 control subjects, 8 patients with (likely) pathogenic JARID2 variants and 3 patients with JARID2 VUSs were analyzed. DNA methylation analysis indicated a clear and robust separation between patients with (likely) pathogenic variants and controls. A binary model capable of classifying patients with the JARID2 -neurodevelopmental syndrome was constructed on the basis of the identified episignature. Patients carrying VUSs clustered with the control group. We identified a distinct DNA methylation signature associated with JARID2 -neurodevelopmental syndrome, establishing its utility as a biomarker for this syndrome and expanding the EpiSign diagnostic test.
- Published
- 2022
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36. Ipilimumab- and nivolumab-induced myocarditis in a patient with metastatic cholangiocarcinoma: a case report.
- Author
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Delombaerde D, Vervloet D, Berwouts D, Beckers R, Prenen H, Peeters M, Gremonprez F, Croes L, and Vulsteke C
- Subjects
- Aged, Bile Ducts, Intrahepatic pathology, Body Weight, Humans, Immune Checkpoint Inhibitors, Ipilimumab adverse effects, Male, Nivolumab adverse effects, Troponin, Antineoplastic Agents, Immunological adverse effects, Bile Duct Neoplasms complications, Cholangiocarcinoma complications, Myocarditis chemically induced, Myocarditis diagnosis
- Abstract
Background: Myocarditis in patients treated with immune checkpoint inhibitors has previously been reported to be rare, though it has most likely been underreported owing to misdiagnosis in the absence of overt clinical presentation. Early detection and characterization of this potentially life-threatening immune-related adverse event is of major importance. Herein we report a case of early-onset myocarditis in an asymptomatic patient treated with dual checkpoint inhibition for metastatic cholangiocarcinoma., Case Presentation: A 69-year-old male Caucasian patient with metastatic cholangiocarcinoma presented with mild epigastric pain and troponinemia prior to the third dose of dual checkpoint inhibition (ipilimumab 1 mg/kg body weight and nivolumab 3 mg/kg body weight). Initial workup showed no significant abnormalities (physical/neurological examination, electrocardiogram, 72-hour Holter monitoring, and a transthoracic echocardiogram). However, cardiac magnetic resonance imaging revealed a zone of contrast enhancement in the inferior segment of the left ventricular wall indicating a recent episode of myocarditis. Despite steroid initiation (0.5 mg/kg oral prednisolone per day), troponin levels kept increasing, in the absence of coronary disease, for which steroids were increased to 1.5 mg/kg/day. Fluorodeoxyglucose positron emission tomography/computed tomography, 28 days after detecting elevated troponin levels, depicted multiple zones of active myocardial inflammation (basal septal, mid-anterior, and apical inferior). The patient is currently stable, and troponinemia is slowly decreasing while steroids are steadily being tapered., Conclusion: As the number of cancers treated with immune checkpoint inhibitors is expanding, the incidence of immune checkpoint inhibitor-induced myocarditis is likely to increase. Moreover, the emerging combination of immune checkpoint inhibitors with non-immune checkpoint inhibitor therapies with potential synergistic cardiotoxic side effects (for example, tyrosine kinase inhibitors) will further complicate the diagnosis of immune-related cardiotoxicity. This case highlights the urgent need for predictive biomarkers to stratify patients at risk and to develop a standardized and multidisciplinary management approach for early diagnosis and treatment of this severe immune-related adverse event., (© 2022. The Author(s).)
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- 2022
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37. Genetic care in geographically isolated small island communities: 8 years of experience in the Dutch Caribbean.
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Verberne EA, Westermann JM, de Vries TI, Ecury-Goossen GM, Lo-A-Njoe SM, Manshande ME, Faries S, Veenhuis HD, Philippi P, Falix FA, Rosina-Angelista I, Ponson-Wever M, Rafael-Croes L, Thorsen P, Arends E, de Vroomen M, Nagelkerke SQ, Tilanus M, van der Veken LT, Huijsdens-van Amsterdam K, van der Kevie-Kersemaekers AM, Alders M, Mannens MMAM, and van Haelst MM
- Subjects
- Caribbean Region epidemiology, Child, Genetic Testing methods, Humans, Retrospective Studies, DNA Copy Number Variations, Intellectual Disability genetics
- Abstract
Worldwide, there are large inequalities in genetic service delivery. In 2011, we established a bi-annual joint pediatric-genetics clinic with a visiting clinical geneticist in the Dutch Caribbean. This retrospective study evaluates the yield of diagnostic testing and the clinical utility of a diagnosis for patients with rare diseases on these relatively isolated, resource-limited islands. A total of 331 patients that were referred to the clinical geneticist between November 2011 and November 2019 and had genetic testing were included in this study. A total of 508 genetic tests were performed on these patients. Microarray, next-generation sequencing gene panels, and single-gene analyses were the most frequently performed genetic tests. A molecularly confirmed diagnosis was established in 33% of patients (n = 108). Most diagnosed patients had single nucleotide variants or small insertions and/or deletions (48%) or copy number variants (34%). Molecular diagnostic yield was highest in patients referred for seizures and developmental delay/intellectual disability. The genetic diagnosis had an impact on clinical management in 52% of patients. Referrals to other health professionals and changes in therapy were the most frequently reported clinical consequences. In conclusion, despite limited financial resources, our genetics service resulted in a reasonably high molecular diagnostic yield. Even in this resource-limited setting, a genetic diagnosis had an impact on clinical management for the majority of patients. Our approach with a visiting clinical geneticist may be an example for others who are developing genetic services in similar settings., (© 2022 The Authors. American Journal of Medical Genetics Part A published by Wiley Periodicals LLC.)
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- 2022
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38. Blood Cytokine Analysis Suggests That SARS-CoV-2 Infection Results in a Sustained Tumour Promoting Environment in Cancer Patients.
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De Winter FHR, Hotterbeekx A, Huizing MT, Konnova A, Fransen E, Jongers B, Jairam RK, Van Averbeke V, Moons P, Roelant E, Le Blon D, Vanden Berghe W, Janssens A, Lybaert W, Croes L, Vulsteke C, Malhotra-Kumar S, Goossens H, Berneman Z, Peeters M, van Dam PA, and Kumar-Singh S
- Abstract
Cytokines, chemokines, and (angiogenic) growth factors (CCGs) have been shown to play an intricate role in the progression of both solid and haematological malignancies. Recent studies have shown that SARS-CoV-2 infection leads to a worse outcome in cancer patients, especially in haematological malignancy patients. Here, we investigated how SARS-CoV-2 infection impacts the already altered CCG levels in solid or haematological malignancies, specifically, whether there is a protective effect or rather a potentially higher risk for major COVID-19 complications in cancer patients due to elevated CCGs linked to cancer progression. Serially analysing immune responses with 55 CCGs in cancer patients under active treatment with or without SARS-CoV-2 infection, we first showed that cancer patients without SARS-CoV-2 infection ( n = 54) demonstrate elevated levels of 35 CCGs compared to the non-cancer, non-infected control group of health care workers ( n = 42). Of the 35 CCGs, 19 were common to both the solid and haematological malignancy groups and comprised previously described cytokines such as IL-6, TNF-α, IL-1Ra, IL-17A, and VEGF, but also several less well described cytokines/chemokines such as Fractalkine, Tie-2, and T cell chemokine CTACK. Importantly, we show here that 7 CCGs are significantly altered in SARS-CoV-2 exposed cancer patients ( n = 52). Of these, TNF-α, IFN-β, TSLP, and sVCAM-1, identified to be elevated in haematological cancers, are also known tumour-promoting factors. Longitudinal analysis conducted over 3 months showed persistence of several tumour-promoting CCGs in SARS-CoV-2 exposed cancer patients. These data demonstrate a need for increased vigilance for haematological malignancy patients as a part of long COVID follow-up.
- Published
- 2021
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39. GSDME and its role in cancer: From behind the scenes to the front of the stage.
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De Schutter E, Croes L, Ibrahim J, Pauwels P, Op de Beeck K, Vandenabeele P, and Van Camp G
- Subjects
- Biomarkers, Tumor genetics, Epigenesis, Genetic, Gene Expression Regulation, Neoplastic, Humans, Prognosis, DNA Methylation, Neoplasms genetics, Receptors, Estrogen genetics, Receptors, Estrogen metabolism
- Abstract
Gasdermin E (GSDME), a gene originally involved in hereditary hearing loss, has been associated with several types of cancer in the last two decades. Recently, GSDME was identified as a pore-forming molecule, which is activated following caspase-3-mediated cleavage resulting in so-called secondary necrosis following apoptotic cell death, or in primary necrotic cell death without an apoptotic phase, so-called pyroptosis-like. This implication in cell death execution suggests its potential role as a tumor suppressor. GSDME also exhibited a cancer type-specific differential methylation pattern between tumor tissues and normal cells, implying GSDME gene methylation as both a pan-cancer and cancer type-specific detection biomarker. A bit paradoxically, GSDME protein expression is considered to be less suited as biomarker, and although its ablation does not protect the cell against eventual cell death, its protein expression might still operate in tumor immunogenicity due to its capacity to induce (secondary) necrotic cell death, which has enhanced immunogenic properties. Additionally, GSDME gene expression has been shown to be associated with favorable prognosis following chemotherapy, and it could therefore be a potential predictive biomarker. We provide an overview of the different associations between GSDME gene methylation, gene expression and tumorigenesis, and explore their potential use in the clinic. Our review only focuses on GSDME and summarizes the current knowledge and most recent advances on GSDME's role in cancer formation, its potential as a biomarker in cancer and on its promising role in immunotherapies and antitumor immune response., (© 2020 UICC.)
- Published
- 2021
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40. Immunoglobin G/total antibody testing for SARS-CoV-2: A prospective cohort study of ambulatory patients and health care workers in two Belgian oncology units comparing three commercial tests.
- Author
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van Dam P, Huizing M, Roelant E, Hotterbeekx A, De Winter FHR, Kumar-Singh S, Moons P, Amajoud Z, Vulsteke C, Croes L, Janssens A, Berneman Z, Prenen H, Meuris L, Vanden Berghe W, Smits E, and Peeters M
- Subjects
- Adolescent, Aged, Ambulatory Care, Belgium epidemiology, COVID-19 epidemiology, COVID-19 immunology, COVID-19 Nucleic Acid Testing, COVID-19 Serological Testing, Case-Control Studies, Child, Child, Preschool, Cohort Studies, Female, Humans, Male, Middle Aged, Neoplasms immunology, Oncology Service, Hospital, Prospective Studies, Reagent Kits, Diagnostic, Reproducibility of Results, SARS-CoV-2, Seroconversion, Seroepidemiologic Studies, Antibodies, Viral immunology, COVID-19 diagnosis, Health Personnel statistics & numerical data, Immunoglobulin G immunology, Neoplasms epidemiology
- Abstract
Background: Coronavirus disease (COVID-19) is interfering heavily with the screening, diagnosis and treatment of cancer patients. Better knowledge of the seroprevalence and immune response after Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection in this population is important to manage them safely during the pandemic., Methods: 922 cancer patients, 100 non-cancer patients and 94 health care workers (HCW) attending the Multidisciplinary Oncology Unit of Antwerp University Hospital from 24th of March 2020 till 31st of May 2020, and the Oncology Unit of AZ Maria Middelares Hospital, Ghent, from 13th of April 2020 till 31st of May 2020 participated in the study. The Alinity® (A; Abbott) and Liaison® (D; DiaSorin) commercially available assays were used to measure SARS-CoV-2 IgG, while total SARS-CoV-2 Ig was measured by Elecsys® (R; Roche)., Results: In the overall study population IgG/total SARS-CoV-2 antibodies were found in respectively 32/998 (3.2%), 68/1020 (6.7%), 37/1010 (3.7%) and of individuals using the A, D or R test. Forty-six out of 618 (7.4%) persons had a positive SARS-CoV-2 polymerase chain reaction (RT-PCR) test. Seroprevalence in cancer patients (A:2.2%, D:6.2%, R:3.0%), did not significantly differ from that in non-cancer patients (A:1.1%, D:5.6%, R:0.0%), but was lower than the HCW (A:13%, D:12%, R:12%; respectively Fisher's exact test p = 0.00001, p = 0.046, p = 0.0004). A positive SARS-CoV-2 RT-PCR was found in 6.8% of the cancer patients, 2.3% of the non-cancer patients and 28.1% of the HCW (Fisher's exact test p = 0.0004). Correlation between absolute values of the different Ig tests was poor in the cancer population. Dichotomising a positive versus negative test result, the A and R test correlated well (kappa 0.82 p McNemar test = 0.344), while A and D and R and D did not (respectively kappa 0.49 and 0.57; result significantly different p McNemar test = <0.0001 for both). The rate of seroconversion (>75%) and median absolute antibody levels (A: 7.0 versus 4.7; D 74.0 versus 26.6, R: 16.34 versus 7.32; all >P Mann Whitney U test = 0.28) in cancer patients and HCW with a positive RT-PCR at least 7 days earlier did not show any differences. However, none (N = 0/4) of the patients with hematological tumours had seroconversion and absolute antibody levels remained much lower compared to patients with solid tumours (R: 0.1 versus 37.6, p 0.003; D 4.1 versus 158, p 0.008) or HCW (all p < 0.0001)., Conclusion: HCW were at high risk of being infected by SARS-CoV-2 during the first wave of the pandemic. Seroprevalence in cancer patients was low in the study period. Although Ig immune response in cancer patients with solid tumours does not differ from healthy volunteers, patients with hematological tumours have a very poor humoral immune response. This has to be taken into account in future vaccination programmes in this population. SARS-CoV-2 antibody tests have divergent results and seem to have little added value in the management of cancer patients., Competing Interests: Conflict of interest statement MP is an advisor of Remedus; none of the other authors has a conflict of interest related to this paper., (Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2021
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41. JARID2 haploinsufficiency is associated with a clinically distinct neurodevelopmental syndrome.
- Author
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Verberne EA, Goh S, England J, van Ginkel M, Rafael-Croes L, Maas S, Polstra A, Zarate YA, Bosanko KA, Pechter KB, Bedoukian E, Izumi K, Chaudhry A, Robin NH, Boothe M, Lippa NC, Aggarwal V, De Vivo DC, Lehman A, Study C, Stockler S, Bruel AL, Isidor B, Lemons J, Rodriguez-Buritica DF, Richmond CM, Stark Z, Agrawal PB, Kooy RF, Meuwissen MEC, Koolen DA, Pfundt R, Lieden A, Anderlid BM, Glatz D, Mannens MMAM, Bakshi M, Mallette FA, van Haelst MM, and Campeau PM
- Subjects
- Haploinsufficiency genetics, Heterozygote, Humans, Phenotype, Polycomb Repressive Complex 2 genetics, Syndrome, Exome Sequencing, Intellectual Disability diagnosis, Intellectual Disability genetics, Neurodevelopmental Disorders diagnosis, Neurodevelopmental Disorders genetics
- Abstract
Purpose: JARID2, located on chromosome 6p22.3, is a regulator of histone methyltransferase complexes that is expressed in human neurons. So far, 13 individuals sharing clinical features including intellectual disability (ID) were reported with de novo heterozygous deletions in 6p22-p24 encompassing the full length JARID2 gene (OMIM 601594). However, all published individuals to date have a deletion of at least one other adjoining gene, making it difficult to determine if JARID2 is the critical gene responsible for the shared features. We aim to confirm JARID2 as a human disease gene and further elucidate the associated clinical phenotype., Methods: Chromosome microarray analysis, exome sequencing, and an online matching platform (GeneMatcher) were used to identify individuals with single-nucleotide variants or deletions involving JARID2., Results: We report 16 individuals in 15 families with a deletion or single-nucleotide variant in JARID2. Several of these variants are likely to result in haploinsufficiency due to nonsense-mediated messenger RNA (mRNA) decay. All individuals have developmental delay and/or ID and share some overlapping clinical characteristics such as facial features with those who have larger deletions involving JARID2., Conclusion: We report that JARID2 haploinsufficiency leads to a clinically distinct neurodevelopmental syndrome, thus establishing gene-disease validity for the purpose of diagnostic reporting.
- Published
- 2021
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42. Prescreening for COVID-19 in patients receiving cancer treatment using a patient-reported outcome platform.
- Author
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Peeters M, van Dam P, Rasschaert MA, Vulsteke C, De Keersmaecker S, Croes L, Van Brussel I, Ravelingien J, Janssens A, and Prenen H
- Subjects
- Aged, COVID-19, COVID-19 Testing, Coronavirus Infections epidemiology, Coronavirus Infections therapy, Coronavirus Infections virology, Early Diagnosis, Health Status, Host-Pathogen Interactions, Humans, Male, Middle Aged, Neoplasms diagnosis, Neoplasms epidemiology, Pandemics, Patient Acceptance of Health Care, Pneumonia, Viral epidemiology, Pneumonia, Viral therapy, Pneumonia, Viral virology, Predictive Value of Tests, SARS-CoV-2, Severity of Illness Index, Time Factors, Betacoronavirus isolation & purification, Clinical Laboratory Techniques, Coronavirus Infections diagnosis, Diagnosis, Computer-Assisted, Home Care Services, Neoplasms therapy, Patient Reported Outcome Measures, Pneumonia, Viral diagnosis
- Abstract
Competing Interests: Competing interests: None declared.
- Published
- 2020
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43. Determination of the Potential Tumor-Suppressive Effects of Gsdme in a Chemically Induced and in a Genetically Modified Intestinal Cancer Mouse Model.
- Author
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Croes L, Fransen E, Hylebos M, Buys K, Hermans C, Broeckx G, Peeters M, Pauwels P, Op de Beeck K, and Van Camp G
- Abstract
Gasdermin E ( GSDME ), also known as deafness autosomal dominant 5 ( DFNA5 ) and previously identified to be an inducer of regulated cell death, is frequently epigenetically inactivated in different cancer types, suggesting that GSDME is a tumor suppressor gene. In this study, we aimed to evaluate the tumor-suppressive effects of GSDME in two intestinal cancer mouse models. To mimic the silencing of GSDME by methylation as observed in human cancers, a Gsdme knockout (KO) mouse was developed. The effect of GSDME on tumorigenesis was studied both in a chemically induced and in a genetic intestinal cancer mouse model, as strong evidence shows that GSDME plays a role in human colorectal cancer and representative mouse models for intestinal cancer are available. Azoxymethane (AOM) was used to induce colorectal tumors in the chemically induced intestinal cancer model ( n = 100). For the genetic intestinal cancer model, Apc
1638N/+ mice were used ( n = 37). In both experiments, the number of mice bearing microscopic proliferative lesions, the number and type of lesions per mouse and the histopathological features of the adenocarcinomas were compared between Gsdme KO and wild type (WT) mice. Unfortunately, we found no major differences between Gsdme KO and WT mice, neither for the number of affected mice nor for the multiplicity of proliferative lesions in the mice. However, recent breakthroughs on gasdermin function indicate that GSDME is an executioner of necrotic cell death. Therefore, it is possible that GSDME may be important for creating an inflammatory microenvironment around the tumor. This is in line with the trend towards more severe inflammation in WT compared to Gsdme KO mice, that we observed in our study. We conclude that the effect of GSDME in tumor biology is probably more subtle than previously thought.- Published
- 2019
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44. Methylation analysis of Gasdermin E shows great promise as a biomarker for colorectal cancer.
- Author
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Ibrahim J, Op de Beeck K, Fransen E, Croes L, Beyens M, Suls A, Vanden Berghe W, Peeters M, and Van Camp G
- Subjects
- Colorectal Neoplasms genetics, CpG Islands, Epigenesis, Genetic, Female, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Humans, Logistic Models, Male, Neoplasm Staging, Promoter Regions, Genetic, Sequence Analysis, RNA, Survival Analysis, Biomarkers, Tumor genetics, Colorectal Neoplasms pathology, DNA Methylation, Down-Regulation, Receptors, Estrogen genetics
- Abstract
In addition to its implication in hereditary hearing loss, the Gasdermin E (GSDME) gene is also a tumor suppressor involved in cancer progression through programmed cell death. GSDME epigenetic silencing through methylation has been shown in some cancer types, but studies are yet to fully explore its diagnostic/prognostic potential in colorectal cancer on a large-scale. We used public data from The Cancer Genome Atlas (TCGA) to investigate differences in GSDME methylation and expression between colorectal cancer and normal colorectal tissue, and between left- and right-sided colorectal cancers in 432 samples. We also explored GSDME's diagnostic capacity as a biomarker for colorectal cancer. We observed differential methylation in all 22 GSDME CpGs between tumor and normal tissues, and in 18 CpGs between the left- and right-sided groups. In the cancer tissue, putative promoter probes were hypermethylated and gene body probes were hypomethylated, while this pattern was inversed in normal tissues. Both putative promoter and gene body CpGs correlated well together but formed distinct methylation patterns with the putative promoter exhibiting the most pronounced methylation differences between tumor and normal tissues. Clinicopathological parameters, excluding age, did not show any effect on CpG methylation. Although the methylation of 5 distinct probes was a good predictor of gene expression, we could not identify an association between GSDME methylation and expression in general. Survival analysis showed no association between GSDME methylation and expression on 5-year patient survival. Through logistic regression, we identified a combination of 2 CpGs, that can discriminate between cancer and normal tissue with high accuracy (AUC = 0.95) irrespective of age and tumor stage. We also validated our model in 3 external methylation datasets, from the Gene Expression Omnibus database, and similar results were reached. Our results suggest that GSDME is a promising biomarker for the detection of colorectal cancer., (© 2019 The Authors. Cancer Medicine published by John Wiley & Sons Ltd.)
- Published
- 2019
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45. Large-scale analysis of DFNA5 methylation reveals its potential as biomarker for breast cancer.
- Author
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Croes L, Beyens M, Fransen E, Ibrahim J, Vanden Berghe W, Suls A, Peeters M, Pauwels P, Van Camp G, and Op de Beeck K
- Subjects
- Adult, Aged, Aged, 80 and over, Breast Neoplasms metabolism, Carcinoma, Ductal, Breast metabolism, Carcinoma, Lobular metabolism, Cell Line, Tumor, CpG Islands, Epigenesis, Genetic, Female, Gene Expression Regulation, Neoplastic, Humans, Middle Aged, Prognosis, Promoter Regions, Genetic, Receptors, Estrogen metabolism, Sequence Analysis, DNA, Sequence Analysis, RNA, Survival Analysis, Up-Regulation, Biomarkers, Tumor genetics, Breast Neoplasms genetics, Carcinoma, Ductal, Breast genetics, Carcinoma, Lobular genetics, DNA Methylation, Receptors, Estrogen genetics
- Abstract
Background: Breast cancer is the most frequent cancer among women worldwide. Biomarkers for early detection and prognosis of these patients are needed. We hypothesized that deafness , autosomal dominant 5 ( DFNA5 ) may be a valuable biomarker, based upon strong indications for its role as tumor suppressor gene and its function in regulated cell death. In this study, we aimed to analyze DFNA5 methylation and expression in the largest breast cancer cohort to date using publicly available data from TCGA, in order to further unravel the role of DFNA5 as detection and/or prognostic marker in breast cancer. We analyzed Infinium HumanMethylation450k data, covering 22 different CpGs in the DFNA5 gene (668 breast adenocarcinomas and 85 normal breast samples) and DFNA5 expression (Agilent 244K Custom Gene Expression: 476 breast adenocarcinomas and 56 normal breast samples; RNA-sequencing: 666 breast adenocarcinomas and 71 normal breast samples)., Results: DFNA5 methylation and expression were significantly different between breast cancer and normal breast samples. Overall, breast cancer samples showed higher DFNA5 methylation in the putative gene promoter compared to normal breast samples, whereas in the gene body and upstream of the putative gene promoter, the opposite is true. Furthermore, DFNA5 methylation, in 10 out of 22 CpGs, and expression were significantly higher in lobular compared to ductal breast cancers. An important result of this study was the identification of a combination of one CpG in the gene promoter (CpG07504598) and one CpG in the gene body (CpG12922093) of DFNA5 , which was able to discriminate between breast cancer and normal breast samples (AUC = 0.93). This model was externally validated in three independent datasets. Moreover, we showed that estrogen receptor state is associated with DFNA5 methylation and expression. Finally, we were able to find a significant effect of DFNA5 gene body methylation on a 5-year overall survival time., Conclusions: We conclude that DFNA5 methylation shows strong potential as detection and prognostic biomarker for breast cancer., Competing Interests: Ethical approval has been obtained by The Cancer Genome Atlas (TCGA).Not applicable.The authors declare that they have no competing interests.Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
- Published
- 2018
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46. DFNA5 promoter methylation a marker for breast tumorigenesis.
- Author
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Croes L, de Beeck KO, Pauwels P, Vanden Berghe W, Peeters M, Fransen E, and Van Camp G
- Subjects
- Adenocarcinoma diagnosis, Adenocarcinoma genetics, Adenocarcinoma metabolism, Adenocarcinoma mortality, Adult, Aged, Aged, 80 and over, Breast Neoplasms diagnosis, Breast Neoplasms metabolism, Breast Neoplasms mortality, Case-Control Studies, Cell Line, Tumor, CpG Islands, Epigenesis, Genetic, Female, Gene Expression Regulation, Neoplastic, Humans, Kaplan-Meier Estimate, Middle Aged, Neoplasm Grading, Neoplasm Metastasis, Neoplasm Staging, Prognosis, ROC Curve, Biomarkers, Tumor, Breast Neoplasms genetics, Cell Transformation, Neoplastic genetics, DNA Methylation, Hearing Loss, Sensorineural genetics, Promoter Regions, Genetic
- Abstract
Background: Identification of methylation markers that are sensitive and specific for breast cancer may improve early detection. We hypothesize that DFNA5 promoter methylation can be a valuable epigenetic biomarker, based upon strong indications for its role as tumor suppressor gene and its function in regulated cell death., Results: Statistically different levels of methylation were seen, with always very low levels in healthy breast reduction samples, very high levels in part of the adenocarcinoma samples and slightly increased levels in part of the normal tissue samples adjacent the tumor. One of the CpGs (CpG4) showed the best differentiation. A ROC curve for DFNA5 CpG4 methylation showed a sensitivity of 61.8% for the detection of breast cancer with a specificity of 100%., Materials and Methods: We performed methylation analysis on four CpGs in the DFNA5 promoter region by bisulfite pyrosequencing on 123 primary breast adenocarcinomas and 24 healthy breast reductions. For 16 primary tumors, corresponding histological normal tissue adjacent to the tumor was available., Conclusions: We conclude that DFNA5 methylation shows strong potential as a biomarker for detection of breast cancer. Slightly increased methylation in histologically normal breast tissue surrounding the tumor suggests that it may be a good early detection marker.
- Published
- 2017
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47. De Novo Trisomy 1q10q23.3 Mosaicism Causes Microcephaly, Severe Developmental Delay, and Facial Dysmorphic Features but No Cardiac Anomalies.
- Author
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Lo-A-Njoe S, van der Veken LT, Vermont C, Rafael-Croes L, Keizer V, Hochstenbach R, Knoers N, and van Haelst MM
- Abstract
Proximal duplications of chromosome 1q are rare chromosomal abnormalities. Most patients with this condition present with neurological, urogenital, and congenital heart disease and short life expectancy. Mosaicism for trisomy 1q10q23.3 has only been reported once in the literature. Here we discuss a second case: a girl with a postnatal diagnosis of a de novo pure mosaic trisomy 1q1023.3 who has no urogenital or cardiac anomalies.
- Published
- 2016
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48. Expression profiling of migrated and invaded breast cancer cells predicts early metastatic relapse and reveals Krüppel-like factor 9 as a potential suppressor of invasive growth in breast cancer.
- Author
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Limame R, de Beeck KO, Van Laere S, Croes L, De Wilde A, Dirix L, Van Camp G, Peeters M, De Wever O, Lardon F, and Pauwels P
- Abstract
Cell motility and invasion initiate metastasis. However, only a subpopulation of cancer cells within a tumor will ultimately become invasive. Due to this stochastic and transient nature, in an experimental setting, migrating and invading cells need to be isolated from the general population in order to study the gene expression profiles linked to these processes. This report describes microarray analysis on RNA derived from migrated or invaded subpopulations of triple negative breast cancer cells in a Transwell set-up, at two different time points during motility and invasion, pre-determined as "early" and "late" in real-time kinetic assessments. Invasion- and migration-related gene expression signatures were generated through comparison with non-invasive cells, remaining at the upper side of the Transwell membranes. Late-phase signatures of both invasion and migration indicated poor prognosis in a series of breast cancer data sets. Furthermore, evaluation of the genes constituting the prognostic invasion-related gene signature revealed Krüppel-like factor 9 (KLF9) as a putative suppressor of invasive growth in breast cancer. Next to loss in invasive vs non-invasive cell lines, KLF9 also showed significantly lower expression levels in the "early" invasive cell population, in several public expression data sets and in clinical breast cancer samples when compared to normal tissue. Overexpression of EGFP-KLF9 fusion protein significantly altered morphology and blocked invasion and growth of MDA-MB-231 cells in vitro. In addition, KLF9 expression correlated inversely with mitotic activity in clinical samples, indicating anti-proliferative effects.
- Published
- 2013
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49. Monitoring the variability in drug-prescribing patterns: benchmarking and feedback in Belgium.
- Author
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Delesie L and Croes L
- Subjects
- Belgium, Humans, Pharmacoepidemiology statistics & numerical data, Benchmarking, Pharmacoepidemiology methods, Practice Patterns, Physicians'
- Abstract
Health-care providers, insurance agencies, ministries, clinicians etc. are installing Information and Communication Technology to monitor patients, patient care and pharmaceutical drug-prescribing patterns. The ever-growing databases create opportunities for better knowledge about the health-care system and, eventually, more effective management. Yet, these databases run the risk of under-utilisation or simplistic interpretation through lack of appropriate knowledge methodology. On the one hand, managers and policy makers oversimplify the available information. Numerous individual patients and pharmaceutical drugs are classified into a small number of categories and measured using Great British pounds or Euros. Sums, averages and two-way tables cover up all the fine shades in patient problems and therapies that are recorded in great detail. On the other hand, investigations discover a wide diversity of patients and a great variability of care patterns among clinicians, hospitals and regions. When so-called unexplained regional, institutional and clinician differences are published, confusion and distrust arise. Examples exist in France, the USA, the UK and Belgium. This document investigates how to discover management knowledge with respect to drug prescribing patterns. The example presented covers the cases of the 18,000 Belgian home practitioners.
- Published
- 2002
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50. [Primary inguinal hernia: Lichtenstein's ambulatory hernioplasty: early clinical results and economic implications. Study of the initial 130 surgical cases].
- Author
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Rutten P, Ledecq M, Hoebeke Y, Roeland A, Van den Oever R, and Croes L
- Subjects
- Anesthesia, Local, Belgium, Cost-Benefit Analysis, Humans, Ambulatory Surgical Procedures economics, Hernia, Inguinal surgery
- Abstract
The authors report their preliminary experience of 130 ambulatory treatment under local anesthesia of primary inguinal hernia. This method of treatment is very well accepted by the patients. There are few early recurrences. This method of treatment is very cost-effective.
- Published
- 1992
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