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Conspicuous body colours and colour polymorphism have been hypothesized to increase rates of speciation. Conspicuous colours are evolutionary labile, and often involved in intraspecific sexual signalling and thus may provide a raw material from which reproductive isolation can easily evolve, while polymorphism could favour rapid evolution of new lineages through morphic speciation. Here, we investigated the influence of the presence/absence of conspicuous colourations, and of colour polymorphism on the speciation of Lacertids. We used several state-dependent diversification models, and showed that, regardless of the methods, conspicuous colourations and colour polymorphism were not related to species speciation. While the lack of correlation between conspicuous colourations and speciation rates is in line with most of the literature testing this hypothesis, the results for colour polymorphism contradict previous studies, and question the generality of the morphic speciation hypothesis.

Aim: Discontinuity in the distribution of genetic diversity (often based on mtDNA) is usually interpreted as evidence for phylogeographic breaks, underlying vicariant units. However, a misleading signal of phylogeographic break can arise in the absence of barrier to gene flow, under mechanisms of isolation by distance (IBD). How and under which conditions phylogeographic breaks can be reliably differentiated from populations evolving under IBD remain unclear. Here, we use multi-locus sequence data from a widely distributed lizard species to address these questions in an empirical setting. Location: Morocco. Taxon: Spiny-footed lizard (Acanthodactylus erythrurus), Squamata: Lacertidae. Methods: Using 325 samples from 40 localities, we identified genetic discontinuities within A. erythrurus based on a mitochondrial fragment and nine nuclear markers independently. Using the nuclear markers, we then applied linear regression models to investigate whether genetic divergence could be explained by geographical distances alone, or barriers to gene flow (real phylogeographic breaks). Results: A. erythrurus is characterized by an important mitochondrial diversity, with 11 strongly supported phylogeographic lineages with a crown age of 6 Mya. Nuclear markers, however, yielded weak phylogenetic support for these lineages. Using clustering methods based on genotypes at nine nuclear loci, we identified phylogeographic clusters that were partly discordant with the mtDNA lineages. Tests of IBD delimited at least four groups of populations separated by barriers to gene flow, but unambiguous separation of vicariance from IBD remained challenging in several cases. Main conclusions: The genetic diversity of A. erythrurus originates from a mix of IBD and vicariance, which were difficult to distinguish, and resulted in similar levels of mitochondrial differentiation. These results highlight that phylogeographic breaks inferred from mitochondrial data should be further investigated using multi-locus data and explicit testing to rule out alternative processes generating discontinuities in mitochondrial diversity, including IBD. We identified four groups of populations within A. erythrurus, separated by barriers to gene flow, but even using nine independent nuclear makers the power of our approach was limited, and further investigation using genome-wide data will be required to resolve the phylogeographic history of this species.

Male homosexual orientation remains a Darwinian paradox, as there is no consensus on its evolutionary (ultimate) determinants. One intriguing feature of homosexual men is their higher male birth rank compared to heterosexual men. This can be explained by two non-exclusive mechanisms: an antagonistic effect (AE), implying that more fertile women have a higher chance of having a homosexual son and to produce children with a higher mean birth rank, or a fraternal birth effect (FBOE), where each additional older brother increases the chances for a male embryo to develop a homosexual orientation due to an immunoreactivity process. However, there is no consensus on whether both FBOE and AE are present in human populations, or if only one of these mechanisms is at play with its effect mimicking the signature of the other mechanism. An additional sororal birth order effect (SBOE) has also recently been proposed. To clarify this situation, we developed theoretical and statistical tools to study FBOE and AE independently or in combination, taking into account all known sampling biases. These tools were applied on new individual data, and on various available published data (two individual datasets, and all relevant aggregated data). Support for FBOE was apparent in aggregated data, with the FBOE increasing linearly with fertility. The FBOE was also supported in two individual datasets. An SBOE is generated when sampling in presence of FBOE, suggesting that controlling for FBOE is required to avoid artefactual SBOE. AE was not supported in individual datasets, including the analysis of the extended maternal family. The evolutionary implications of these findings are discussed.

When environmental conditions are unpredictable, expressing alternative phenotypes spreads the risk of failure, a mixed strategy called bet-hedging. In the southern part of its range, the Parsley Frog Pelodytes punctatus breeds both in autumn and in spring. Our aim was to study the breeding phenology and reproductive success associated with the use of those two seasonal niches to understand how this breeding strategy can be maintained. Field surveys revealed that breeding phenology was typically bimodal with a higher breeding effort in autumn. More importantly, in spring, the survival rate of offspring was severely reduced by the presence of autumn tadpoles, indicating a clear priority effect. However, the autumn cohort often failed to survive over winter, in which case spring cohorts were often successful. Based on those results, we constructed a model in which females can allocate a variable portion of eggs to each season and added a priority effect. We conclude that the existence of the two breeding seasons may indeed constitute a bet-hedging strategy.

The genetic architecture of speciation, i.e., how intrinsic genomic incompatibilities promote reproductive isolation (RI) between diverging lineages, is one of the best-kept secrets of evolution. To directly assess whether incompatibilities arise in a limited set of large-effect speciation genes, or in a multitude of loci, we examined the geographic and genomic landscapes of introgression across the hybrid zones of 41 pairs of frog and toad lineages in the Western Palearctic region. As the divergence between lineages increases, phylogeographic transitions progressively become narrower, and larger parts of the genome resist introgression. This suggests that anuran speciation proceeds through a gradual accumulation of multiple barrier loci scattered across the genome, which ultimately deplete hybrid fitness by intrinsic postzygotic isolation, with behavioral isolation being achieved only at later stages. Moreover, these loci were disproportionately sex linked in one group (Hyla) but not in others (Rana and Bufotes), implying that large X-effects are not necessarily a rule of speciation with undifferentiated sex chromosomes. The highly polygenic nature of RI and the lack of hemizygous X/Z chromosomes could explain why the speciation clock ticks slower in amphibians compared to other vertebrates. The clock-like dynamics of speciation combined with the analytical focus on hybrid zones offer perspectives for more standardized practices of species delimitation.

Recent empirical studies have demonstrated that speciation with gene flow is more common than previously thought. From a conservation perspective, the potential negative effects of hybridization raise concerns on the genetic integrity of endangered species. However, introgressive hybridization has also been growingly recognized as a source of diversity and new advantageous alleles. Carbonell's wall lizard (Podarcis carbonelli) is an endangered species whose distribution overlaps with four other congeneric species. Our goal here was to determine whether P. carbonelli is completely reproductively isolated from its congeners and to evaluate the relevance of hybridization and interspecific gene flow for developing a conservation plan. We used restriction site associated DNA (RAD) sequencing to discover SNPs in samples from four contact zones between P. carbonelli and four other species. Principal component analysis, multilocus genotype assignment and interspecific heterozygosity suggest incomplete reproductive isolation and ongoing gene flow between species. However, hybridization dynamics vary across all pairs, suggesting complex interactions between multiple intrinsic and extrinsic barriers. Despite seemingly ubiquitous interspecific gene flow, we found evidence of strong reproductive isolation across most contact zones. Instead, indirect effects of hybridization like waste of reproductive effort in small isolated populations may be more problematic. Our results highlight the need to further evaluate the consequences of introgression for P. carbonelli, both on a geographic and genomic level and included in a comprehensive and urgently needed conservation plan. Besides, those findings will add important insights on the potential effects of hybridization and introgression for endangered species.

The canonical model of sex-chromosome evolution predicts that, as recombination is suppressed along sex chromosomes, gametologs will progressively differentiate, eventually becoming heteromorphic. However, there are numerous examples of homomorphic sex chromosomes across the tree of life. This homomorphy has been suggested to result from frequent sex-chromosome turnovers, yet we know little about which forces drive them. Here, we describe an extremely fast rate of turnover among 28 species of Ranidae. Transitions are not random, but converge on several chromosomes, potentially due to genes they harbour. Transitions also preserve the ancestral pattern of male heterogamety, in line with the hot-potato model of sex-chromosome transitions, suggesting a key role for mutation-load accumulation in non-recombining genomic regions. The importance of mutation-load selection in frogs might result from the extreme heterochiasmy they exhibit, making frog sex chromosomes differentiate immediately from emergence and across their entire length.

Aim: Deserts represent dynamic ecosystems that support communities of endemic and specialised species. We analysed the role of present and past climatic conditions in shaping the distribution of the widespread Bunopus geckos in the Arabian and south‐west Asian deserts. We studied their phylogeographic and demographic history to test whether the Bunopus geckos colonised Arabia from Asia or, vice versa, Asia from Arabia and to identify migration corridors that have historically enabled the dispersal of Bunopus geckos. Location: The Middle East, especially the Arabian Peninsula. Taxon: Genus Bunopus (Squamata; Gekkonidae). Methods: We generated sequence data for four genes and performed maximum likelihood, Bayesian inference and time‐calibrated phylogenetic analyses and ancestral area reconstruction to infer the phylogenetic and biogeographic history of the genus. We modelled the species' distribution and projected it to several past time periods spanning from mid‐Pliocene to the present. We analysed contemporary landscape connectivity across the peninsula to identify dispersal corridors that enable migration and promote gene flow among Bunopus populations in Arabia. Results: Bunopus is formed by deeply divergent lineages that correspond to up to eight candidate species. The genus originated in southwest Asia and dispersed to Arabia in the late Miocene. The Arabian populations were stable through most of their history in terms of size and distribution extent. Major corridors for contemporary Bunopus dispersal stretch along the eastern Arabian coasts from where they cross through the peninsula to the northern Red Sea coasts. Main Conclusions: The evolutionary history of Bunopus was substantially influenced by paleoenvironmental conditions. The generalist habits and ground‐dwelling lifestyle enabled the geckos to colonise most of the arid regions of southwest Asia, with Arabia being colonised from the Iranian Plateau in the late Miocene. The distribution extent of Bunopus responded to the past climatic and habitat oscillations; the range was fragmented during moist climatic phases, and it expanded in times of increased aridity. The genus requires taxonomic revision to formally assess its diversity. Based on the results obtained in this study, Crossobamon orientalis is reassigned to Bunopus. [ABSTRACT FROM AUTHOR]

The Pelophylax genus comprises two main hybridogenetic systems resulting from hybridization between Pelophylax ridibundus and other species: the P. lessonae-esculentus (LE) system and the P. perezi-grafi (PG) system, whose distribution ranges lie partly (LE) or entirely (PG) outside the natural distribution of P. ridibundus. The introductions and subsequent expansions of P. ridibundus in many areas naturally inhabited by these hybridogenetic systems have led to their decrease or local extinction. One of the major impediments to efficient population surveys and conservation measures for these systems is the difficulties of reliable species identification due to their similar morphology and poorly documented vocalizations, especially for the PG system. Our aim in this work was to design a reliable method of acoustic identification to distinguish the taxa composing the hybridogenetic systems from P. ridibundus and to assess the possibility of separating the PG and LE systems by their vocalizations. Our acoustic identification methods proved highly accurate to separate the PG and LE systems from P. ridibundus but only a fraction of the PG and LE calls can be identified. [ABSTRACT FROM AUTHOR]

North Africa is the most important centre of diversification for the skinks of the genus Chalcides. Morocco alone is inhabited by 16 species of which nine are endemic, while eight species are known from Algeria, none of them endemic. We add here to this diversity a taxon that was first collected by Paul Pallary in 1925, discussed by Pellegrin in 1926, and whose status has been debated by several authors since without reaching a satisfactory consensus. In 2003 and 2008, two specimens with the same habitus as Pallary's specimen were found near Missour (Morocco) and near Djelfa (Algeria), respectively. A molecular analysis based on mitochondrial and nuclear genes shows that these two recent individuals belong to an undefined lineage that is sister to Chalcides montanus, and that we describe here as a new subspecies. It shares many morphological features with the nominate subspecies, but differs most prominently in its colour pattern of five black stripes in the first third of the dorsum, ocelli on the dorsum and on the flanks that disappear roughly in the first third or half of the body, and two broad light dorsolateral bands that disappear around midbody; its genetic divergence is estimated at 4.2% in cytochrome b sequence and 0.8% in a concatenated alignment of several nuclear loci. This new taxon is presently known from three specimens and two localities in the Hauts Plateaux of eastern Morocco and Algeria. [ABSTRACT FROM AUTHOR]