240 results on '"Cowman, Peter F."'
Search Results
2. Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous
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Ghezelayagh, Ava, Harrington, Richard C., Burress, Edward D., Campbell, Matthew A., Buckner, Janet C., Chakrabarty, Prosanta, Glass, Jessica R., McCraney, W. Tyler, Unmack, Peter J., Thacker, Christine E., Alfaro, Michael E., Friedman, Sarah T., Ludt, William B., Cowman, Peter F., Friedman, Matt, Price, Samantha A., Dornburg, Alex, Faircloth, Brant C., Wainwright, Peter C., and Near, Thomas J.
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- 2022
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3. Ice ages and butterflyfishes: Phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot
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DiBattista, Joseph D, Alfaro, Michael E, Sorenson, Laurie, Choat, John H, Hobbs, Jean‐Paul A, Sinclair‐Taylor, Tane H, Rocha, Luiz A, Chang, Jonathan, Luiz, Osmar J, Cowman, Peter F, Friedman, Matt, and Berumen, Michael L
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Biological Sciences ,Ecology ,Environmental Management ,Genetics ,Evolutionary Biology ,Environmental Sciences ,Life Below Water ,biogeographic barriers ,Chaetodon ,coral reef ,glaciation events ,Pleistocene ,ultraconserved elements ,Evolutionary biology ,Ecological applications - Abstract
For tropical marine species, hotspots of endemism occur in peripheral areas furthest from the center of diversity, but the evolutionary processes that lead to their origin remain elusive. We test several hypotheses related to the evolution of peripheral endemics by sequencing ultraconserved element (UCE) loci to produce a genome-scale phylogeny of 47 butterflyfish species (family Chaetodontidae) that includes all shallow water butterflyfish from the coastal waters of the Arabian Peninsula (i.e., Red Sea to Arabian Gulf) and their close relatives. Bayesian tree building methods produced a well-resolved phylogeny that elucidated the origins of butterflyfishes in this hotspots of endemism. We show that UCEs, often used to resolve deep evolutionary relationships, represent an important tool to assess the mechanisms underlying recently diverged taxa. Our analyses indicate that unique environmental conditions in the coastal waters of the Arabian Peninsula probably contributed to the formation of endemic butterflyfishes. Older endemic species are also associated with narrow versus broad depth ranges, suggesting that adaptation to deeper coral reefs in this region occurred only recently (
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- 2018
4. Data and code used for the paper 'Global trends and biases in biodiversity conservation research'
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Caldwell, Iain R., Hobbs, Jean Paul A., Bowen, Brian W., Cowman, Peter F., DiBattista, Joseph D., Whitney, Jon L., Ahti, Pauliina A., Belderok, Roy, Canfield, Sean, Coleman, Richard R., Iacchei, Matthew, Johnston, Erika C., Knapp, Ingrid, Nalley, Eileen M., Stäudle, Timo, Láruson, Áki Jarl, Caldwell, Iain R., Hobbs, Jean Paul A., Bowen, Brian W., Cowman, Peter F., DiBattista, Joseph D., Whitney, Jon L., Ahti, Pauliina A., Belderok, Roy, Canfield, Sean, Coleman, Richard R., Iacchei, Matthew, Johnston, Erika C., Knapp, Ingrid, Nalley, Eileen M., Stäudle, Timo, and Láruson, Áki Jarl
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- 2024
5. A tenuis relationship: traditional taxonomy obscures systematics and biogeography of the 'Acropora tenuis' (Scleractinia: Acroporidae) species complex.
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Bridge, Tom C L, Cowman, Peter F, Quattrini, Andrea M, Bonito, Victor E, Sinniger, Frederic, Harii, Saki, Head, Catherine E I, Hung, Julia Y, Halafihi, Tuikolongahau, Rongo, Teina, and Baird, Andrew H
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BIOLOGICAL classification , *CORAL reef conservation , *CORAL reef management , *SINGLE nucleotide polymorphisms , *CLADISTIC analysis - Abstract
Molecular phylogenetics has fundamentally altered our understanding of the taxonomy, systematics and biogeography of corals. Recently developed phylogenomic techniques have started to resolve species-level relationships in the diverse and ecologically important genus Acropora , providing a path to resolve the taxonomy of this notoriously problematic group. We used a targeted capture dataset (2032 loci) to investigate systematic relationships within an Acropora clade containing the putatively widespread species Acropora tenuis and its relatives. Using maximum likelihood phylogenies and genetic clustering of single nucleotide polymorphisms from specimens, including topotypes, collected across the Indo-Pacific, we show ≥ 11 distinct lineages in the clade, only four of which correspond to currently accepted species. Based on molecular, morphological and geographical evidence, we describe two new species; Acropora rongoi n. sp. and Acropora tenuissima n. sp. and remove five additional nominal species from synonymy. Systematic relationships revealed by our molecular phylogeny are incongruent with traditional morphological taxonomy and demonstrate that characters traditionally used to delineate species boundaries and infer evolutionary history are homoplasies. Furthermore, we show that species within this clade have much smaller geographical ranges and, consequently, population sizes than currently thought, a finding with profound implications for conservation and management of reef corals. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Comparative mitogenomics of marine angelfishes (F: Pomacanthidae).
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Baraf, Lauriane M., Hung, Julia Y., Pratchett, Morgan S., and Cowman, Peter F.
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BIOLOGICAL classification ,GENE expression ,POPULATION genetics ,TRANSFER RNA ,MITOCHONDRIAL DNA - Abstract
The targeted capture of ultraconserved elements (UCEs) has substantially increased the amount of genetic data available for phylogenomic reconstructions. These capture datasets frequently contain mitochondrial DNA as a by‐product, often in the form of complete mitogenomes. These can be efficiently harvested to expand existing datasets without additional costs. Here, we present new mitochondrial genomes for six marine angelfish species (F: Pomacanthidae), assembled and annotated from off‐target UCE reads. We provide the first comparative analysis of all mitochondrial genomes available for the Pomacanthidae. Results showed that the average length of pomacanthid mitogenomes is 16.8 kbp. Total GC and AT content varied between 44.5% and 46.3%, and 53.7% and 55.5%, respectively. The architecture of angelfish mitogenomes was comparable to that seen in other fish species with 13 protein‐coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and the control region. All 13 PCGs evolved under purifying selection, highlighting a high level of selection pressure and gene expression to preserve genetic integrity. The ND6 and ATP8 genes had the highest ratio of non‐synonymous (dN) to synonymous (dS) substitutions, indicating a relaxation of purifying selection constraints. Finally, these newly assembled mitogenomes will allow further investigations of the population genetics, systematics and evolutionary biology of one of the most prominent reef fish family in the aquarium trade. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Analysing biological colour patterns from digital images: An introduction to the current toolbox
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Hemingson, Christopher R., primary, Cowman, Peter F., additional, and Bellwood, David R., additional
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- 2024
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8. The evolution of traits and functions in herbivorous coral reef fishes through space and time
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Siqueira, Alexandre C., Bellwood, David R., and Cowman, Peter F.
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- 2019
9. A review of the fossil record of the Labridae
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Bellwood, David R., Schultz, Ortwin, Siqueira, Alexandre C., and Cowman, Peter F.
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- 2019
10. Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time
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Quattrini, Andrea M., Rodríguez, Estefanía, Faircloth, Brant C., Cowman, Peter F., Brugler, Mercer R., Farfan, Gabriela A., Hellberg, Michael E., Kitahara, Marcelo V., Morrison, Cheryl L., Paz-García, David A., Reimer, James D., and McFadden, Catherine S.
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- 2020
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11. Biogeography: multidisciplinary approaches in space and time
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Saslis-Lagoudakis, C. Haris, Cowman, Peter F., Cardillo, Marcel, Catullo, Renee A., Rosauer, Dan F., and Warren, Dan L.
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biogeography - Published
- 2014
12. Widespread sympatry in a species-rich clade of marine fishes (Carangoidei)
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Glass, Jessica R., primary, Harrington, Richard C., additional, Cowman, Peter F., additional, Faircloth, Brant C., additional, and Near, Thomas J., additional
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- 2023
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13. Bathymetric evolution of black corals through deep time
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Horowitz, Jeremy, primary, Quattrini, Andrea M., additional, Brugler, Mercer R., additional, Miller, David J., additional, Pahang, Kristina, additional, Bridge, Tom C. L., additional, and Cowman, Peter F., additional
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- 2023
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14. A tenuis relationship: traditional taxonomy obscures systematics and biogeography of the ‘Acropora tenuis’ (Scleractinia: Acroporidae) species complex
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Bridge, Tom C L, primary, Cowman, Peter F, additional, Quattrini, Andrea M, additional, Bonito, Victor E, additional, Sinniger, Frederic, additional, Harii, Saki, additional, Head, Catherine E I, additional, Hung, Julia Y, additional, Halafihi, Tuikolongahau, additional, Rongo, Teina, additional, and Baird, Andrew H, additional
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- 2023
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15. Trophic innovations fuel reef fish diversification
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Siqueira, Alexandre C., Morais, Renato A., Bellwood, David R., and Cowman, Peter F.
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- 2020
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16. An inverse latitudinal gradient in speciation rate for marine fishes
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Rabosky, Daniel L., Chang, Jonathan, Title, Pascal O., Cowman, Peter F., Sallan, Lauren, Friedman, Matt, and Kaschner, Kristin
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Fishes -- Genetic aspects ,Phylogeny -- Analysis ,Speciation -- Research ,Oceans ,Resveratrol ,Animal taxonomy ,Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Far more species of organisms are found in the tropics than in temperate and polar regions, but the evolutionary and ecological causes of this pattern remain controversial.sup.1,2. Tropical marine fish communities are much more diverse than cold-water fish communities found at higher latitudes.sup.3,4, and several explanations for this latitudinal diversity gradient propose that warm reef environments serve as evolutionary 'hotspots' for species formation.sup.5-8. Here we test the relationship between latitude, species richness and speciation rate across marine fishes. We assembled a time-calibrated phylogeny of all ray-finned fishes (31,526 tips, of which 11,638 had genetic data) and used this framework to describe the spatial dynamics of speciation in the marine realm. We show that the fastest rates of speciation occur in species-poor regions outside the tropics, and that high-latitude fish lineages form new species at much faster rates than their tropical counterparts. High rates of speciation occur in geographical regions that are characterized by low surface temperatures and high endemism. Our results reject a broad class of mechanisms under which the tropics serve as an evolutionary cradle for marine fish diversity and raise new questions about why the coldest oceans on Earth are present-day hotspots of species formation.Contrary to previous hypotheses, high-latitude fish lineages form new species at much faster rates than their tropical counterparts especially in geographical regions that are characterized by low surface temperatures and high endemism., Author(s): Daniel L. Rabosky [sup.1] , Jonathan Chang [sup.2] , Pascal O. Title [sup.1] , Peter F. Cowman [sup.3] [sup.4] , Lauren Sallan [sup.5] , Matt Friedman [sup.6] , Kristin [...]
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- 2018
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17. Evolutionary processes underlying latitudinal differences in reef fish biodiversity
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Siqueira, Alexandre C., Oliveira-Santos, Luiz Gustavo R., Cowman, Peter F., and Floeter, Sergio R.
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- 2016
18. Exploring the Relationships between Mutation Rates, Life History, Genome Size, Environment, and Species Richness in Flowering Plants
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Bromham, Lindell, Hua, Xia, Lanfear, Robert, and Cowman, Peter F.
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- 2015
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19. Rhipidipathes Milne-Edwards & Haime 1857
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C. L.
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Cnidaria ,Aphanipathidae ,Animalia ,Biodiversity ,Rhipidipathes ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Genus Rhipidipathes Milne-Edwards & Haime, 1857 Diagnosis. Corallum flabellate; anastomosing among some branches; polypar spines acute or blunt, smooth or tuberculate; circumpolypar spines slightly larger than interpolypar spines; hypostomal spines often equal to the circumpolypar spines but may be reduced in size or absent on some portions of the corallum. Remarks. Although Rhipidipathes is currently in the Aphanipathidae, previous (Brugler et al. 2013; Bo et al. 2018; Terrana et al. 2021) and the present study indicate that the genus is more closely related to species in the Antipathidae. The present study suggests that Rhipidipathes shares a lineage with the genus Blastopathes Horowitz, 2020 (Fig 2). Both genera have distinct morphological differences. For example, Rhipidipathes consists of thin branches that can fuse to create flabellate “fan-like” colonies (Opresko 2004) and Blastopathes consists of thick, stem-like branches that do not fuse and possess branches that sprout from clusters to create “tree-like” colonies (Horowitz et al. 2020). Due to the differences between these “sister” genera, their family-level relationships need to be verified. Type Species: Rhipidipathes reticulata (Esper 1795) Type Locality: East Indian Ocean, Published as part of Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F. & Bridge, Tom C. L., 2022, Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia, pp. 1-35 in Zootaxa 5213 (1) on page 10, DOI: 10.11646/zootaxa.5213.1.1, http://zenodo.org/record/7350036, {"references":["Haime, J. & Milne-Edwards, H. (1857) Histoire naturelle des coralliaires, ou polypes proprement dits; par H. Milne-Edwards ... Histoire naturelle des coralliaires, ou polypes proprement dits. Roret, Paris, 326 pp.","Brugler, M. R., Opresko, D. M. & France, S. C. (2013) The evolutionary history of the order Antipatharia (Cnidaria: Anthozoa: Hexacorallia) as inferred from mitochondrial and nuclear DNA: implications for black coral taxonomy and systematics. Zoological Journal of the Linnean Society, 169, 312 - 361. https: // doi. org / 10.1111 / zoj. 12060","Bo, M., Barucca, M., Biscotti, M. A., Brugler, M. R., Canapa, A., Canese, S., lo Iacono, C. & Bavestrello, G. (2018) Phylogenetic relationships of Mediterranean black corals (Cnidaria: Anthozoa: Hexacorallia) and implications for classification within the order Antipatharia. Invertebrate Systematics, 32, 1102. https: // doi. org / 10.1071 / is 17043","Terrana, L., Flot, J. - F. & Eeckhaut, I. (2021) ITS 1 variation among Stichopathes cf. maldivensis (Hexacorallia: Antipatharia) whip black corals unveils conspecificity and population connectivity at local and global scales across the Indo-Pacific. Coral Reefs, 40, 521 - 533. https: // doi. org / 10.1007 / s 00338 - 020 - 02049 - 8","Horowitz, J., Brugler, M. R., Bridge, T. C. L. & Cowman, P. F. (2020) Morphological and molecular description of a new genus and species of black coral (Cnidaria: Anthozoa: Hexacorallia: Antipatharia: Antipathidae: Blastopathes) from Papua New Guinea. Zootaxa, 4821 (3), 553 - 569. https: // doi. org / 10.11646 / zootaxa. 4821.3.7","Opresko, D. M. (2004) Revision of the Antipatharia (Cnidaria: Anthozoa). Part IV. Establishment of a new family, Aphanipathidae. Zoologische Mededelingen, Leiden, 78, 1 - 15.","Esper, E. J. C. (1795) Die Pflanzenthiere in Abbildungen nach der Natur mit Farben erleuchtet nebst Beschreibungen. in der Raspischen Buchhandlung, Nurnberg, 303 pp."]}
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- 2022
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20. Antipathes morrisi Horowitz & Opresko & Molodtsova & Beaman & Cowman & Bridge 2022, sp. nov
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C. L.
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Cnidaria ,Antipathes morrisi ,Antipathes ,Antipathidae ,Animalia ,Biodiversity ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Antipathes morrisi Horowitz sp. nov. (Figs. 1–3; Supplementary Tables 1–2) Material examined. Holotype, MTQ G80140, Australia, Great Barrier Reef, Orpheus Island, Pioneer Bay North, expedition Voyage of the Kalinda, collected on October 22, 2019, - 18.5998° S, 146.4888° E, 14 m depth, collector Jeremy Horowitz. Diagnosis. Flabellate corallum, up to ~ 1 cm thick; branches and terminal branchlets arranged bilaterally, or anterolaterally; overlapping, and branches anastomose. Terminal branchlets 4 to 10 mm in length, slightly curved distally, distal angles ~45 to almost 90°, 0.11 to 0.25 mm in basal diameter, spaced 2 to 5 mm apart: with a density of ~4 per cm including all rows. Spines smooth, conical, and laterally compressed, 0.085 to 0.19 mm tall. Some spines on branches possess up to four small, cone-shaped apical knobs. Four to five axial rows of spines counted in one view and four to seven spines counted in one cm in one row. Polyps 0.8 to 1 mm in transverse diameter, spaced ~ 0.2 mm apart, with eight to nine polyps per cm. Description of holotype. The entire colony was 60 cm tall by 60 cm wide and 1 cm thick (Fig. 3A), but only a 28 cm tall and 20 cm wide section (MTQ G80140) was collected. The colony is branched to the fourth and rarely fifth order and has branches and terminal branchlets that are mostly distally directed and form one distinct, ~ 1 cm thick flabellate plane with highly anastomosing branches (Fig. 3B). Branches bilaterally arranged projecting in one plane with the smaller branchlets occurring unilaterally or bilaterally in two lateral or rarely anterolateral rows. Branches range from ~0.3 to ~ 1 mm in diameter excluding spine heights. Terminal branchlets are mostly 4 to 10 mm in length, have basal diameters ranging from 0.11 to 0.25 mm, and are spaced 2 to 5 mm apart on one side of a branch resulting in about 8 to 10 terminal branchlets per cm, counting terminal branches on both sides of the branch. Branches and terminal branchlets form ~45 to almost 90° distal angles and can be almost straight or slightly curved upwards. Spines on terminal branchlets are smooth, conical, and laterally compressed. Spines are slightly distally inclined or perpendicular to the axis with convex proximal sides, and tips curved slightly upwards (Fig. 3C). On terminal branchlets with diameters from 0.11 to 0.25 mm, polypar spine heights range from 0.12 to 0.19 mm and abpolypar spine heights range from 0.085 to 0.11 mm (Fig. 3C). On lower order branches, spines are more conical and can possess two to four small conical knobs 0.01 to 0.03 mm tall, concentrated near their apexes that are directed in the same general direction as the spine. On a section of a branch 0.22 mm in diameter, polypar spines are 0.13 mm and abpolypar spines are 0.1 mm (Fig. 3D). Four to five axial rows of spines can be counted in one view of branches and terminal branchlets and four to seven spines can be counted in one cm, in one row. Polyps are yellow to brown in color, oblong in shape, and occur on one side of the colony, in one row. Polyps are 0.8 to 1 mm in transverse diameter and spaced ~ 0.2 mm apart resulting in about nine polyps per cm (Fig. 3E). Comparative diagnosis. Twenty-one out of 67 nominal species possess flabellate planar corallums with anastomoses. Of this number, Antipathes clathrata Pallas, 1766 and Antipathes tristis (Duchassaing, 1870) have very vague original descriptions that lack sufficient taxonomic information to clearly separate these two species. All other species can be distinguished from the new species. Antipathes delicatula Schultze, 1896 and Antipathes ceylonensis (Thomson & Simpson, 1905) are more loosely branched than the new species. Antipathes atlantica Gray, 1857, A. ceylonensis, Antipathes gracilis Gray, 1860, Antipathes indistincta (van Pesch, 1914) and Antipathes rhipidion Pax, 1916 form only rare occasional anastomoses, whereas the new species form a densely anastomosing fan. Antipathes craticulata Opresko, 2015, Antipathes dubia (Brook, 1889) and Antipathes plana Cooper, 1909 have uniserial arrangement of terminal branchlets throughout the corallum in contrast to new species, that demonstrate characteristic biserial arrangement (Fig. 3B). The new species is also different than A. craticulata by having less distinctly curved branches and terminal branchlets. Antipathes hypnoides (Brook, 1889), Antipathes minor (Brook, 1889), Antipathes sibogae (van Pesch, 1914), and Antipathes elegans (Thomson & Simpson, 1905) have polyps less than 0.5 mm in transverse diameter compared with 0.8 to 1.0 mm in the new species. The new species is also different than A. hypnoides by having much more regularly spaced terminal branchlets and a lower density of terminal branchlets (4 per cm vs> 9 per cm). Antipathes assimilis (Brook, 1889), Antipathes flabellum Pallas, 1776 (sensu Terrano et al., 2021), Antipathes irregularis (Thomson and Simpson, 1905), Antipathes ternatensis Schultze, 1896, Antipathes zoothallus Pax, 1932 and Antipathes speciosa (Brook, 1889) have rather small spine heights 0.09 mm and less, whereas the new species has polypar spines 0.12-0.19 mm and abpolypar spines 0.008 5 to 0.11 mm. The new species is also different than A. flabellum by having branches projecting perpendicular to the colony plane, narrower distal angles (45° vs 79°), and spines that are more perpendicular. The new species has some similarities with Antipathes aculeata (Brook, 1889) including fused branches and short spines with sharp and sometimes forked tips. However, the new species differs from A. aculeata regarding the colony thickness where the new species is only 1 cm thick because branches and terminal branchlets are arranged bilaterally forming a distinct fan-shape while A. aculeata forms a dense mass of branches resembling a bush. Also, the new species has a smaller terminal branchlet basal diameter compared to A. aculeata (0.11 to 0.25 mm vs 0.3 mm). The new species also has some features similar with Arachnopathes ericoides (Pallas, 1776) like fused branches and short branchlets slightly curved upwards; however, as with A. aculeata, the new species forms a fan while Ar. ericoides forms a thick and dense mass, like A. aculeata. Additionally, Ar. ericoides has spines that can be forked and inclined in different directions, including downwards, and can lack longitudinal rows (Terrana et al. 2020) while the new species has spines that are not forked but can be slightly multi-knobbed, not proximally directed, and form distinct longitudinal rows along branches and terminal branchlets. This new species is phylogenetically similar to A. falkorae sp. nov. and Ar. ericoides; however, A. morrisi sp. nov. and Ar. ericoides have fused branches while A. falkorae sp. nov. does not contain any fused branches (see description below). A. falkorae sp. nov. also contains longer and straighter branches that form fronds rather than the single fan characteristic of A. morrisi sp. nov. The morphological differences are sufficient to separate the species and the phylogenetic comparison does not include holotype or topotype specimens for most species being compared with the new species in the Antipathidae, which should be done in future studies that are devoted to species delimitations. Etymology. In recognition of the Morris Family Foundation that funds research at the Orpheus Island Research Station where the new species was first found and collected. Distribution. Known only from the Great Barrier Reef at 14 m depth., Published as part of Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F. & Bridge, Tom C. L., 2022, Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia, pp. 1-35 in Zootaxa 5213 (1) on pages 4-5, DOI: 10.11646/zootaxa.5213.1.1, http://zenodo.org/record/7350036, {"references":["Pallas, P. (1766) s. n. In: Elenchus zoophytorum sistens generum adumbrationes generaliores et specierum cognitarum succintas descriptiones, cum selectis auctorum synonymis. Apud Petrum van Cleef, IIagae-Comitum the Hagae, pp. 451 - 451.","Duchassaing, de F. (1870) s. n. In: Revue des zoophytes des spongiaires des Antilles. V. Masson, Paris, pp. 23 - 24.","Schultze, L. (1896) Beitrag Zur Systematik Der Antipatharien. Abhandlungen der Senckenbergischen Naturforschenden Gesellschaft, 23, 1 - 40.","Thomson, J. & Simpson, J. J. (1905) Report on the Antipatharia collected by Prof. Herdman at Ceylon in 1902. Supplemental Report No. XXV to the Report to the Government of Ceylon on the Pearl Oyster Fisheries of the Gulf of Manaar, Part 4, 93 - 106.","Gray, J. E. (1857) Synopsis of the families and genera of axiferous zoophytes or barked corals. Proceedings of the Zoological Society of London, 25, 278 - 294. https: // doi. org / 10.1111 / j. 1096 - 3642.1857. tb 01242. x","Gray, J. E. (1860) Notice of some new corals from Madeira discovered by JY Johnson, Esq. The Annals and magazine of natural history; zoology, botany, and geology being a continuation of the Annals combined with Loudon and Charlesworth's Magazine of Natural History, 6, 311.","Pesch, A. J. van (1914) The Antipatharia of the Siboga Expedition. Siboga-Expeditie, 17, 1 - 258.","Pax, F. (1916) Eine neue Antipathes-Art aus Westindien. Zoologische Jahrbucher, Supplement 11, 433 - 436.","Opresko, D. M. (2015) New species of black corals (Cnidaria: Anthozoa: Antipatharia) from New Zealand and adjacent regions. New Zealand Journal of Zoology, 42, 145 - 164. https: // doi. org / 10.1080 / 03014223.2015.1051550","Brook, G. (1889) Report on the Antipatharia. Report on the scientific results of the voyage of H. M. S. Challenger, 32, 1 - 222.","Cooper, C. F. (1909) Antipatharia. Reports of the Percy Sladen Trust Expedition to the Indian Ocean. In: Transactions of the Linnean Society of London, Zoology Series 2, 12, 301 - 323.","Pax, F. (1932) Beitrag zur Kenntnis der japanischen Dornchenkorallen. Zoologische Jahrbucher, 63, 407 - 450.","Terrana, L., Bo, M., Opresko, D. M. & Eeckhaut, I. (2020) Shallow-water black corals (Cnidaria: Anthozoa: Hexacorallia: Antipatharia) from SW Madagascar. Zootaxa, 4826, 1 - 62. https: // doi. org / 10.11646 / zootaxa. 4826.1.1"]}
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- 2022
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21. Rhipidipathes helae Horowitz & Opresko & Molodtsova & Beaman & Cowman & Bridge 2022, sp. nov
- Author
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C. L.
- Subjects
Cnidaria ,Rhipidipathes helae ,Aphanipathidae ,Animalia ,Biodiversity ,Rhipidipathes ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Rhipidipathes helae Horowitz sp. nov. (Figs. 1–2 and 5; Tables 1 and Supplementary Table 1) Material examined: MTQ G80117, Australia, Great Barrier Reef, Bowl Slide, Schmidt Ocean Institute R / V Falkor Northern Depths of the Great Barrier Reef expedition FK200930, ROV SuBastian dive S0394, collected on October 5, 2020, 18.3865° S, 147.6705° E, 119 m depth, collector Jeremy Horowitz. Diagnosis: Corallum flabellate, branched; branches and branchlets extensively anastomosing. Terminal branchlets 0.5 to 1 cm in length and 0.08 mm in diameter, arranged bilaterally, are irregularly alternate, opposite, or subopposite, and slightly protrude from the colony plane. Spines on branches perpendicular or distally inclined. Circumpolypar spines 0.23 to 0.29 mm tall and hypostomal and interpolypar spines maximum of 0.11 mm tall. Spines on terminal branchlets are distinctly curved apically and rarely basally. Five to six axial rows of spines can be counted in one view. Surface of spines extensively tuberculated, especially from about the midpoint to the apex. Polyps roundish, 0.8 mm in transverse diameter. Interpolypar space 0.1 to 0.2 mm, with 10 polyps per cm. Description of holotype: Colony flabellate and about 20 cm wide and 20 cm high based on estimations from in situ images (Figs. 5A–B). Collected sample about 7 cm wide and 9 cm tall. Longest branches are ~ 8 cm in length and have 0.1 cm basal diameter. Terminal branchlets are 0.5 to 1 cm in length, arranged bilaterally, and are either irregularly alternate, opposite, or subopposite. Branchlets often not strictly bilateral but slightly protrude from the general plane of the colony forming ~120° interior angles. Most terminal branchlets form ~80° distal angles and are slightly curved distally (Fig. 5B). There is extensive fusing among branches and terminal branchlets (Fig. 5C). Four anastomosing branches/branchlets can be counted in a 5 cm 2 fragment of a colony. Terminal branchlet basal diameter is 0.08 mm, distance between neighboring terminal branchlets ranges from 1 to 3 mm, and about 10 branchlets can be counted per cm of a branch, counting branches in both rows. On a branch 0.2 mm thick, polypar spines are anisomorphic with circumpolypar spines ranging from 0.23 to 0.29 mm tall and hypostomal and interpolypar spines reduced to 0.11 mm. Abpolypar spines are uniform in height, ranging from 0.13 to 0.15 mm (Fig. 5D). Polypar spines on branches are positioned mostly perpendicular to the axis or slightly distally inclined and abpolypar spines are more distally directed than polypar spines, creating ~45° distal angles (Figs. 5D–E). Six to 10 conical and apically directed tubercles can be counted in lateral view of the polypar spines, including those on the edges (Fig. 5E) and three to six tubercles can be counted in lateral view of abpolypar spines, with the proximal surface of all spines being mostly smooth (Figs. 5C–D). Tubercles become elongated and strongly appressed to the surface of the spine as they increase in size, reaching a maximum size of 0.03 mm (measuring the distance from the base of the tubercle to the apex of the tubercle). Tip of largest tubercles up to 0.004 mm above the spine surface (Fig. 5E). On thin branchlets (0.08 to 0.095 mm in diameter), circumpolypar spines are 0.13 mm tall, oriented perpendicular to the axis, and are distinctly curved upward (Fig. 5D, right image). On thin branchlets abpolypar spines are 0.11 mm tall, distally directed and are curved upward. On thin branchlets, a maximum of three tubercles can be counted in one lateral view of the surface of polypar and abpolypar spines, with the proximal surface of all spines being mostly smooth. On branches and terminal branchlets, five to six uneven axial rows of spines can be counted in one view. Polyps are pink, roundish with equally developed tentacles, and sagittal tentacles positioned slightly lower than lateral tentacles (Fig. 5B). On terminal branchlets and branches, polyps occur in one row; however, polyps can be arranged in several rows along thicker branches near the base of the colony. Polyps are ~ 0.8 mm in the transverse diameter and spaced 0.1 to 0.2 mm apart, resulting in 10 polyps per cm. Tentacles are approximated from in situ images to be 0.15 mm in length, when extended. Comparative diagnosis. This is the third nominal species in the genus Rhipidipathes. Rhipidipathes reticulata (Esper 1795) and Rhipidipathes colombiana (Opresko & Sánchez 1997) are similar in most features (See Table 1 for comparison of three species); however, R. colombiana has limited anastomosing branchlets, hypostomal spines that are only minimally reduced in size, and spines with almost no tubercles while R. reticulata has greater anastomosing branchlets, reduced hypostomal spines, and possesses tubercles on polypar spines. The new species is morphologically and phylogenetically most similar to R. reticulata by having highly anastomosing branchlets and terminal branches, reduced hypostomal spines and clear presence of tubercles on spines. The new species is different from R. reticulata by having thinner terminal branchlets (0.08 vs 0.22 mm in the type) and has spines on terminal branchlets that are distinctly curved, mostly upward but sometimes downward, not found in R. reticulata. See comparison of spines on a terminal branchlet between R. helae sp. nov. (Fig. 5D, right image) that possesses upward curved spines and R. reticulata holotype (Fig. 5F) that possesses straight spines. Additionally, the new species has a greater number of tubercules on polypar and abpolypar spines than R. reticulata (six to 10 vs three to seven tubercles in one view of a polypar spine, and three to six vs zero to three tubercles in one view of an abpolypar spine). Etymology: From the Norse, “hel”, goddess of death, who is depicted wearing a headdress of curved deer antlers that resemble the distinctively curved spines of the new species. Distribution. Known only from the Great Barrier Reef at 119 m depth., Published as part of Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F. & Bridge, Tom C. L., 2022, Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia, pp. 1-35 in Zootaxa 5213 (1) on pages 10-13, DOI: 10.11646/zootaxa.5213.1.1, http://zenodo.org/record/7350036, {"references":["Opresko, D. M. & Sanchez, J. A. (1997) A new species of antipatharian coral (Cnidaria: Anthozoa) from the Caribbean Coast of Colombia. Caribbean Journal of Science, 33, 75 - 81.","Esper, E. J. C. (1795) Die Pflanzenthiere in Abbildungen nach der Natur mit Farben erleuchtet nebst Beschreibungen. in der Raspischen Buchhandlung, Nurnberg, 303 pp.","Opresko, D. M. & Baron-Szabo, R. C. (2001) Re-descriptions of the antipatharian corals described by E. J. C. Esper with selected English translations of the original German text. Senckenbergiana biologica, 81, 1 - 21."]}
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22. Hexapathes bikofskii Horowitz & Opresko & Molodtsova & Beaman & Cowman & Bridge 2022, sp. nov
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C. L.
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Cnidaria ,Cladopathidae ,Animalia ,Hexapathes bikofskii ,Biodiversity ,Hexapathes ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Hexapathes bikofskii Horowitz sp. nov. (Figs. 1–2 and 7; Supplementary Table 1 and Table 2) Material examined: Holotype. MTQ G80122, Australia, Great Barrier Reef, Noddy Reef, expedition Schmidt Ocean Institute R / V Falkor Seamounts, Canyons, and Reefs of the Coral Sea expedition 200802, ROV Subastian dive S0398, collected on October 15, 2020, 13.5174° S, 144.1012° E, 789 m depth, collector Jeremy Horowitz. Paratype. MTQ G80024, Australia, Coral Sea, Herald Cays, expedition Schmidt Ocean Institute R / V Falkor Seamounts, Canyons, and Reefs of the Coral Sea expedition 200802, ROV SuBastian dive S0376, collected on August 08, 2020, - 16.9095° S, 149.1601° E, 638 m depth, collector Jeremy Horowitz. Diagnosis: Colony monopodial, unbranched, and pinnulate. Pinnules arranged in two lateral rows and one anterior row. Basal-most pair of lateral pinnules subopposite, other lateral pinnules alternating. Striatum present from 1 cm above basal plate to first anterior pinnules. Lateral pinnules simple, up to 12 cm long, densities of six to 10 per 3 cm counting both rows. Anterior pinnules simple, 0.8 to 1.2 cm in length, densities of 11 to 15 per 3 cm. Polyps 4 to 6 mm in transverse diameter. Description of holotype (G80122): Colony is monopodial and pinnulate with a slight sickle shape curvature of the stem (Fig. 7A). Grooves and ridges on the stem are present from 1 cm from the basal plate to the first anterior pinnule. Colony is 23 cm tall and 17 cm wide. Unpinnulated section of the stem is 4 cm and the pinnulated section of the stem is 19 cm (Fig. 7A). The specimen has two rows of lateral pinnules where the bottom pair of pinnules are subopposite and positioned perpendicular to the stem. Above the bottom pair of pinnules, pinnules are arranged alternately with distal angles ranging from ~80° at the bottom of the pinnulated section to ~20° at the top; with most pinnules having 45° distal angles. Lateral pinnules are curved forward and then backward so that the pinnule tips face in the opposite direction from the anterior pinnules. Lateral pinnules increase in length from the lowest pair of pinnules, which are ~ 8.5 cm, to midway up the pinnulated section where the longest pinnules are 12 cm, and then decrease towards the apex where the most distal pinnules are ~ 3 cm. Lateral pinnules are ~ 0.5 mm in diameter near the attachment point, and distances between pinnules in each row range from 5 to 10 mm (increasing in distance distally), resulting in 10 lateral pinnules counted near the bottom of the pinnulated section of the stem and six pinnules counted near the top of the pinnulated section, per 3 cm counting lateral pinnules in both rows. Anterior pinnules are simple, in one row and range from 0.8 to 1.5 cm in height, with most up to 1 cm in height. Distance between anterior pinnules range from 2 to 3 mm, resulting in 11 to 13 anterior pinnules counted per 3 cm. Spines on lateral pinnules are 0.025 to 0.1 mm in height, smooth, triangular, and distally directed (Fig. 7B). Lateral pinnule spines are spaced 0.45 to 0.7 mm apart in each row, and two spines can be counted per mm in one row. Four axial rows of spines can be counted in lateral view (Fig. 7B). Spines on anterior pinnules are smooth, triangular to conical, and distally directed. Spine heights are variable, ranging from 0.04 to 0.08 mm, and the distance between spines in one row is about 0.25 mm. Three to four axial rows of spines can be counted in one view of anterior pinnules. Polyps are ~ 4 to 6 mm in the transverse diameter and 6 to 8 polyps counted per three cm. Description of paratype (G80024): The colony is monopodial and pinnulate with a slight sickle shape curvature of the stem (Fig. 7C) and has two rows of distally directed lateral pinnules. Grooves and ridges are present along the stem from 1 cm above basal plate to the first anterior pinnule. Colony is 13 cm tall and 13 cm wide. The unpinnulated section of the stem is 4 cm and the pinnulated section is 9 cm in height. The lowest pair of pinnules are suboppositely arranged and are positioned almost perpendicular to the axis. All other pinnules are alternating and have distal angles ranging from ~20 degrees proximally to ~80 degrees distally. Lateral pinnules increase in length from the lowest pair of pinnules, which are 4 cm, to midway up the pinnulated section where the longest pinnules range from 6. 5 to 8 cm, and then decreasing towards the apex where the highest pair of pinnules are ~ 3 cm (Fig. 7C). Distances between pinnules range from 5 to 9 mm (increasing in distance distally), resulting in eight pinnules (near the top of the pinnulated section of stem) to 10 pinnules (near the bottom of the pinnulated section of stem) per 3 cm, counting lateral pinnules in both rows. Lateral pinnules are 0.3 mm in diameter near the attachment point. Anterior pinnules are simple, in one row with lengths ranging from 0.5 to 1 cm, with most pinnules being close to 1 cm (Fig. 7D). Anterior pinnules begin from the same height on the stem as the second lowest lateral pinnules, and extend to 5 mm above the most distal lateral pinnule. Anterior pinnules are 0.18 mm in diameter near the attachment point, and distances between pinnules range from 2 to 4 mm, resulting in 13 to 15 pinnules per 3 cm. Spines on lateral pinnules 0.05 mm in height and are smooth and triangular (Fig. 7E). Lateral pinnule spines have distances between spines in one row from 0.48 to 0.7 mm and two to three spines can be counted in one mm in one row. Five axial rows of spines can be counted in one view. Spines on anterior pinnules are smooth, triangular to conical, and distally directed (Fig. 7F). Spine heights are variable, and range from 0.02 to 0.07 mm and distances between spines in one row range from 0.32 to 0.45 mm. Three to four axial rows of spines can be counted in one view of anterior pinnules. Polyps are in a poor state of preservation and estimated based on in-situ images to be reddish in color and 6 mm in the transverse diameter. Comparative diagnosis. H. bikofskii sp. nov. is different than other species in Hexapathes by having only one row of simple (unpinnulated) and short (maximum of 1 cm in the new species vs maximum of 6 to 11 cm in currently described Hexapathes spp.) and straight anterior pinnules. See Table 2 for comparison of species in the genus. The new species is like H. australiensis Opresko, 2003 and H. alis Molodtsova, 2006 by having just one row of anterior pinnules; however, the anterior pinnules of both species are subpinnulated while the new species has simple anterior pinnules. The new species is like H. hivaensis Molodtsova, 2006 and H. heterosticha Kinoshita, 1910 by lacking anterior subpinnules; however, both species have two or more rows of anterior pinnules while the new species only has one row of anterior pinnules. Another difference between the new species and currently described species in the genus is the length of the unpinnulated section of the stem (ranging from 2 to 2.5 cm in described species vs 4 cm in the new species). The new species shares other features with H. australiensis for the following morphometrics: 1) distance between lateral pinnules on one side of the stem (0.5 to 1 cm vs 0.4 to 1.1 cm in H. australiensis), both of which have spaces greater than the other three described species, and 2) the basal diameter of lateral pinnules is 0.3 to 0.5 mm in the new species and 0.5 mm in H. australiensis), both of which are smaller than the other three described species. The two specimens representing the new species form a clade sister to H. heterosticha; however, the other species in the genus have yet to be sequenced. Specimens representing species in the genus Hexapathes should be sequenced to further investigate morphological boundaries between species. Etymology: In recognition of lead author’s grandfather, Morton Isaiah Bikofsky, a high school teacher whose passion for science fuelled JH’s interest in research. Distribution. Known only from the Great Barrier Reef and Coral Sea from 638 to 789 m depth.
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23. Antipathes falkorae Horowitz & Opresko & Molodtsova & Beaman & Cowman & Bridge 2022, sp. nov
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C. L.
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Cnidaria ,Antipathes ,Antipathidae ,Animalia ,Biodiversity ,Anthozoa ,Antipatharia ,Antipathes falkorae ,Taxonomy - Abstract
Antipathes falkorae Horowitz sp. nov. (Figs. 1–2 and 4; Supplementary Table 1) Material examined. Holotype, MTQ G80067, Australia, Great Barrier Reef, Ribbon Reef Canyons, Schmidt Ocean Institute R / V Falkor, Seamounts, Canyons, and Reefs of the Coral Sea expedition FK200802, ROV SuBastian dive S0385, collected on August 18, 2020, - 15.3968° S, 145.7934° E, 111 m depth, collector Jeremy Horowitz. Diagnosis. Colony fan-like, with unilateral and sparse branching mostly to the second and third order; terminal branchlets 3 to 5 cm long and curved proximally forming 45° distal branch angles. Spines conical, mostly smooth with distinct apical knobs, secondary knobs, and some papillae on the apical section of spines 0.15 to 0.17 mm tall. Four to five axial rows of spines counted in one view. Polyps 0.8 to 1 cm in transverse diameter and eight polyps per cm. Description of holotype. Specimen is fan-like and 21 cm in height (lowermost 5 cm or more of the stem and the holdfast not collected); branched mostly to the second and rarely to the third or fourth order, with stiff and straight or slightly curved vertically directed branches (Figs. 4A–B). Distal branch angles are mostly 45°. Branching is sparse and in one plane, with mostly one and sometimes two or three branches occurring on a given lower order branch. Branching is unilateral with successive orders of branches often arising on the same side as the lower order branches. The five most basal branches are disposed on one side of the stem with subsequent branches disposed on the same side as lower order branches, while the four most apical branches occur on the opposite side of the stem and have higher order branches disposed on the same side as their direct lower order branches (Fig. 4B). The one branch between the five most basal and four most apical branches is disposed on the same side as the basal branches but has secondary branches occurring on both sides of the branch. Terminal branchlets are 3 to 5 cm in length and 0.19 to 0.2 mm in diameter near the base (Fig. 4B). The lowest portion of the stem is 0.9 mm in diameter. Spines on a branch 0.2 mm thick or greater have polypar spines 0.15 to 0.17 mm tall and abpolypar spines 0.1 to 0.15 mm tall (Fig. 4C). On branches 0.20 mm in diameter, spines are about 0.14 mm tall (Fig. 4D), and on terminal branchlets 0.2 mm or less in diameter, spines are at most 0.13 mm tall (Fig. 4E). Spines on large (about 0.2 mm or thicker) branches have extensive apical knobbing with knobs reaching maximum heights of 0.04 mm (Fig. 4F). Where knobbing is most pronounced, spine tips flare outward (at right angles to the direction of the branch axis) and become vertically compressed with small secondary knobs occurring on primary knobs (Fig. 4G). Faint papillae can be seen on and in between well-developed knobs (Fig. 4G). Spines on terminal branchlets less than 0.2 mm in diameter have few or no apical knobs, and are smooth, triangular, slightly distally directed, laterally compressed. Four to five axial rows of spines can be counted in one view; 3.5 to 4 spines can be counted in one mm; and distances between axial rows range from ~0.3 to 0.4 mm. Polyps are yellow to white in color, 0.8 to 1 mm in the transverse diameter with about 0.5 mm space between polyps resulting in about eight polyps in one cm (Fig. 4H). Comparative diagnosis. A. falkorae sp. nov. is most like Antipathes coronata Opresko, 2019 by having straight and vertically directed branches, unilateral branching, slightly larger polypar than abpolypar spines, and apical knobs on the spines. However, the new species has more extensive apical knobbing where on a spine ~ 0.14 mm tall, the new species has five to six primary knobs compared to A. coronata, which has three knobs. The new species also has small protrusions that could be considered secondary knobs on top of primary knobs that are absent on A. coronata. The new species has on average a smaller terminal branchlet diameter than A. coronata (0.2 vs 0.3 mm); however, both species have ~5 axial spine rows visible in a lateral view. The new species also has slightly wider distal branch angles that create more of a fan shape compared to A. coronata. Lastly, the new species has very faint papillae on and in between primary and secondary knobs, which differs from A. coronata that has smooth knobs. Antipathes elegans Thomson & Simpson 1905 and A. gallensis Thomson & Simpson 1905 are also morphologically like A. falkorae sp. nov. where both have apical knobbing on the spines and faint papillae on the surface of the spines; however, the new species is different from both species by having more extensive knobbing (about six knobs per spine vs three to four in A. elegans and A. gallensis) and a presence of secondary knobs that are lacking in these other species. This new species is phylogenetically similar to Ar. ericoides and A. aculeata (Supplementary Table 3); however, the new species does not possess fused branches while Ar. ericoides and A. aculeata have high levels of fused branches. Additionally, the specimens representing A. aculeata are not holotype or topotype specimens, which explains why they do not form a monophyletic relationship. The new species also has a low phylogenetic distance with A. morrisi sp. nov. and a feature that unites the two new species is a presence of apical knobs on the spines. However, A. morrisi sp. nov. has fused branches, unlike A. falkorae sp. nov. Etymology. In recognition of the Schmidt Ocean Institute R/V Falkor, onboard which this and many other black coral species were collected from the Great Barrier Reef and Coral Sea. Distribution. Known only from the Great Barrier Reef at 111 m depth.
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24. Aphanipathes Brook 1889
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C. L.
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Cnidaria ,Aphanipathes ,Aphanipathidae ,Animalia ,Biodiversity ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Genus Aphanipathes Brook, 1889 Diagnosis. Colony sparsely to densely, irregularly branched, bushy, sometimes broom-like, with short to long, straight or curved, often ascending branches. Spines with tall and pronounced tubercles. Type Species. Aphanipathes sarothamnoides Brook, 1889 Type Locality. Vanuatu, Published as part of Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F. & Bridge, Tom C. L., 2022, Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia, pp. 1-35 in Zootaxa 5213 (1) on page 13, DOI: 10.11646/zootaxa.5213.1.1, http://zenodo.org/record/7350036, {"references":["Brook, G. (1889) Report on the Antipatharia. Report on the scientific results of the voyage of H. M. S. Challenger, 32, 1 - 222."]}
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25. Antipathes Pallas 1766
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C. L.
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Cnidaria ,Antipathes ,Antipathidae ,Animalia ,Biodiversity ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Genus Antipathes Pallas, 1766 Diagnosis (after Opresko 2019). Corallum sparsely to densely branched. Branching bushy, bramble-like, broomlike, or fan-shaped. Terminal branchlets of varying length; arranged irregularly, or bilaterally. Spines triangular or cone-shaped in lateral view; smooth or papillose; apex of spines simple or with one or more lobes or bifurcations. Polyps less than 1 mm in transverse diameter. Type Species. Antipathes dichotoma Pallas, 1766 Type Locality. Mediterranean Sea Remarks. Antipathes dichotoma is the type species of the Antipathidae; however, molecular studies (Bo et al. 2018; Brugler et al. 2013), including this study (Fig. 2), have found that the species is more closely related to species in the Aphanipathidae than the Antipathidae. A formal review with integrated morphological and molecular data of all species in each family is required to resolve this taxonomic issue., Published as part of Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F. & Bridge, Tom C. L., 2022, Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia, pp. 1-35 in Zootaxa 5213 (1) on page 4, DOI: 10.11646/zootaxa.5213.1.1, http://zenodo.org/record/7350036, {"references":["Pallas, P. (1766) s. n. In: Elenchus zoophytorum sistens generum adumbrationes generaliores et specierum cognitarum succintas descriptiones, cum selectis auctorum synonymis. Apud Petrum van Cleef, IIagae-Comitum the Hagae, pp. 451 - 451.","Opresko, D. M. (2019) New species of black corals (Cnidaria: Anthozoa: Antipatharia) from the New Zealand region, part 2. New Zealand Journal of Zoology, 47, 149 - 186. https: // doi. org / 10.1080 / 03014223.2019.1650783","Bo, M., Barucca, M., Biscotti, M. A., Brugler, M. R., Canapa, A., Canese, S., lo Iacono, C. & Bavestrello, G. (2018) Phylogenetic relationships of Mediterranean black corals (Cnidaria: Anthozoa: Hexacorallia) and implications for classification within the order Antipatharia. Invertebrate Systematics, 32, 1102. https: // doi. org / 10.1071 / is 17043","Brugler, M. R., Opresko, D. M. & France, S. C. (2013) The evolutionary history of the order Antipatharia (Cnidaria: Anthozoa: Hexacorallia) as inferred from mitochondrial and nuclear DNA: implications for black coral taxonomy and systematics. Zoological Journal of the Linnean Society, 169, 312 - 361. https: // doi. org / 10.1111 / zoj. 12060"]}
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26. Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia
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Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C.L.
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Cnidaria ,Cladopathidae ,Aphanipathidae ,Antipathidae ,Animalia ,Biodiversity ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., Bridge, Tom C.L. (2022): Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia. Zootaxa 5213 (1): 1-35, DOI: https://doi.org/10.11646/zootaxa.5213.1.1
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27. Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia
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HOROWITZ, JEREMY, primary, OPRESKO, DENNIS, additional, MOLODTSOVA, TINA N., additional, BEAMAN, ROBIN J., additional, COWMAN, PETER F., additional, and BRIDGE, TOM C.L., additional
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- 2022
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28. Phylogenetic perspectives on reef fish functional traits
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Floeter, Sergio R., Bender, Mariana G., Siqueira, Alexandre C., and Cowman, Peter F.
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- 2018
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29. Quaternary coral reef refugia preserved fish diversity
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Pellissier, Loïc, Leprieur, Fabien, Parravicini, Valeriano, Cowman, Peter F., Kulbicki, Michel, Litsios, Glenn, Olsen, Steffen M., Wisz, Mary S., Bellwood, David R., and Mouillot, David
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- 2014
30. Widespread sympatry in a species-rich clade of marine fishes (Carangoidei)
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Glass, Jessica R., primary, Harrington, Richard C., additional, Cowman, Peter F., additional, Faircloth, Brant C., additional, and Near, Thomas J., additional
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- 2022
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31. Vicariance across major marine biogeographic barriers: temporal concordance and the relative intensity of hard versus soft barriers
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Cowman, Peter F. and Bellwood, David R.
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- 2013
32. The historical biogeography of coral reef fishes: global patterns of origination and dispersal
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Cowman, Peter F. and Bellwood, David R.
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- 2013
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33. The biogeography of tropical reef fishes: endemism and provinciality through time
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Cowman, Peter F., Parravicini, Valeriano, Kulbicki, Michel, and Floeter, Sergio R.
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- 2017
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34. The evolution of fishes on coral reefs: fossils, phylogenies, and functions
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Bellwood, David R., primary, Goatley, Christopher H.R., additional, Cowman, Peter F., additional, and Bellwood, Orpha, additional
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- 2015
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35. Biogeography, reproductive biology and phylogenetic divergence within the Fungiidae (mushroom corals)
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Grinblat, Mila, primary, Cooke, Ira, additional, Shlesinger, Tom, additional, Ben-Zvi, Or, additional, Loya, Yossi, additional, Miller, David J., additional, and Cowman, Peter F., additional
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- 2021
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36. Solving the Coral Species Delimitation Conundrum
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Ramírez-Portilla, Catalina, primary, Baird, Andrew H, additional, Cowman, Peter F, additional, Quattrini, Andrea M, additional, Harii, Saki, additional, Sinniger, Frederic, additional, and Flot, Jean-François, additional
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- 2021
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37. Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous
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Ghezelayagh, Ava, primary, Harrington, Richard C., additional, Burress, Edward D., additional, Campbell, Matthew A., additional, Buckner, Janet C., additional, Chakrabarty, Prosanta, additional, Glass, Jessica R., additional, Tyler McCraney, W., additional, Unmack, Peter J., additional, Thacker, Christine E., additional, Alfaro, Michael E., additional, Friedman, Sarah T., additional, Ludt, William B., additional, Cowman, Peter F., additional, Friedman, Matt, additional, Price, Samantha A., additional, Dornburg, Alex, additional, Faircloth, Brant C., additional, Wainwright, Peter C., additional, and Near, Thomas J., additional
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- 2021
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38. Predation drives recurrent convergence of an interspecies mutualism
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Feeney, William E, Brooker, Rohan M, Johnston, Lane N, Gilbert, James DJ, Besson, Marc, Lecchini, David, Dixson, Danielle L, Cowman, Peter F, Manica, Andrea, Feeney, William E [0000-0002-7475-4724], Brooker, Rohan M [0000-0001-8739-6914], Gilbert, James DJ [0000-0001-7014-2803], Dixson, Danielle L [0000-0003-1493-1482], Cowman, Peter F [0000-0001-5977-5327], and Apollo - University of Cambridge Repository
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predator-prey interactions ,Coral Reefs ,mutualism ,Predatory Behavior ,Fishes ,cooperation ,Animals ,Biodiversity ,convergent evolution ,Symbiosis - Abstract
Mutualisms are important ecological interactions that underpin much of the world's biodiversity. Predation risk has been shown to regulate mutualism dynamics in species-specific case studies; however, we lack studies which investigate whether predation can also explain broader patterns of mutualism evolution. We report that fish-anemone mutualisms have evolved on at least 55 occasions across 16 fish families over the past 60 million years and that adult body size is associated with the ontogenetic stage of anemone mutualisms: larger-bodied species partner with anemones as juveniles, while smaller-bodied species partner with anemones throughout their lives. Field and laboratory studies show that predators target smaller prey, that smaller fishes associate more with anemones, and that these relationships confer protection to small fishes. Our results indicate that predation is likely driving the recurrent convergent evolution of fish-anemone mutualisms and suggest that similar ecological processes may have selected convergence in interspecies interactions in other animal clades.
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- 2019
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39. The influence of habitat association on swimming performance in marine teleost fish larvae
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Downie, Adam T., primary, Leis, Jeffrey M., additional, Cowman, Peter F., additional, McCormick, Mark I., additional, and Rummer, Jodie L., additional
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- 2021
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40. Types, topotypes and vouchers are the key to progress in coral taxonomy: Comment on Wepfer et al. (2020)
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Bonito, Victor E., primary, Baird, Andrew H., additional, Bridge, Tom, additional, Cowman, Peter F., additional, and Fenner, Douglas, additional
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- 2021
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41. Morphological and molecular description of a new genus and species of black coral (Cnidaria: Anthozoa: Hexacorallia: Antipatharia: Antipathidae: Blastopathes) from Papua New Guinea
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Horowitz, Jeremy, Brugler, Mercer R., Bridge, Tom C.L., and Cowman, Peter F.
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Cnidaria ,Hexacorallia ,Systematics ,biology ,Phylogenetic tree ,Antipathidae ,Color ,Biodiversity ,biology.organism_classification ,Anthozoa ,Black coral ,DNA, Mitochondrial ,Papua New Guinea ,Evolutionary biology ,Phylogenetics ,Animalia ,Animals ,Animal Science and Zoology ,Taxonomy (biology) ,Antipatharia ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Taxonomy - Abstract
Blastopathes medusa gen. nov., sp. nov., is described from Kimbe Bay, Papua New Guinea, based on morphological and molecular data. Blastopathes, assigned to the Antipathidae, is a large, mythology-inspiring black coral characterized by clusters of elongate stem-like branches that extend out at their base and then curve upward. Colonies are not pinnulate and contain single branches, which could represent new branch cluster formations. Morphological and molecular (mitochondrial DNA and targeted capture of nuclear loci) evidence supporting the establishment of a new genus is discussed. This is the first study to utilize the target capture of ultraconserved elements (UCEs) and exonic loci to elucidate phylogenetic relationships among black corals and to identify and place a new genus and species.
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- 2020
42. Blastopathes Horowitz & Brugler & Bridge & Cowman 2020, gen. nov
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Horowitz, Jeremy, Brugler, Mercer R., Bridge, Tom C. L., and Cowman, Peter F.
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Cnidaria ,Antipathidae ,Blastopathes ,Animalia ,Biodiversity ,Anthozoa ,Antipatharia ,Taxonomy - Abstract
Blastopathes Horowitz gen. nov. (Figures 2–8; Tables 1–2) Diagnosis. Corallum sparsely branched to the third and sometimes fourth order, not pinnulate. Branches long (up to 1.3 m) and spaced far apart (distances between first order branches and second order branches range from 210 cm to 560 cm) and occurring singly or in verticil-like clusters of varying numbers (as many as 10). Stem and branches thick (up to 6 mm diameter) and rigid. Each branch extending out at their base perpendicular to the stem and lower order branches from which they arise, and then curving upward with distal ends being straight or curved. One branch can extend directly upwards from the center of the cluster. Spines triangular or conical, laterally compressed, smooth, up to 0.34 mm tall. Polyps, ~ 1.25 mm in transverse diameter, ~6 polyps per cm in one row. Sagittal tentacles (~ 8 mm in length, extended) are more than twice the length of lateral tentacles (~ 3 mm in length, extended). Remarks. Blastopathes morphologically resembles Allopathes Opresko & Cairns, 1994, which also has stemlike branches coming from a singular location on the corallum (Opresko & Cairns 1994). However; Blastopathes differs from Allopathes by having branch clusters that do not necessarily occur near the base of the stem and in having more than one branch cluster (Figures 2 A–2B). Additionally, the abpolypar spines of Blastopathes are triangular, smooth, and distally slanted while all spines of Allopathes are conical with conical tubercles near the apex (Figures 2 C–2D). Other genera that contain sparse and elongate branches are Pteropathes Brook, 1889, Hillopathes van Pesch, 1910, and in the genus Antipathes, Antipathes dichotoma Palla, 1766; however, none contain branch clusters. Lastly, Blastopathes contains a stiff and non-pinnulate stem and branches that resemble unbranched genera Pseudocirrhipathes Bo et al., 2009, Cirrhipathes de Blainville, 1830, and Stichopathes Brook, 1889, all of which differ from Blastopathes by lacking branches. Molecular results. The mitochondrial igrN sequences for specimens NMAG 1893 and NMAG 1895 consisted of 482 base pairs. The two specimens shared identical sequences across 465 comparable bases. The complete igrN alignment consisted of 47 sequences, 682 bp, and included species from all seven black coral families. In the 682 bp alignment there were 274 parismony informative site (40%). Targeted capture data for 33 specimens that spanned six of the seven families in the Antipatharia, resulted in a total number of raw reads ranging from 44,898 to 3,603,888. One sample (10 raw reads, C705) was removed due to sequencing failure. Quality control and adapter trimming resulting in a mean of 1,606,997 ± 1,640,018 SD trimmed reads per sample. Trimmed reads were assembled into a mean of 927 ± 154 SD contigs per sample. The total number of matched UCE/exon loci was 2,309 with an average base pair length of 752 (ranging from 83 to 18,423 base pairs). The 75% taxon occupancy matrix included 286 loci that were concatenated into an alignment with a total length of 111,929 base pairs. A total of 36,052 parismony informative (PI) sites were identified (32% of total sites), with an average of 126.06 PI sites per locus.Alignment were also constructed for the for the holotype specimen (MTQ G74904) and the two paratype specimens (NMAG 1893 and NMAG 1895). The total number of matched loci across the three samples was 1,290 with an average base pair length of 623 (ranging from 189 to 4,068 bp). A complete (all three samples present in each loci) concatenated matrix included 792 loci, with a total alignment length of 499,264 base pairs. There were 3,855 variable sites (~0.7% of total sites) among the three samples. Despite the difference in species-level sampling, the maximum likelihood phylogenies displayed similar topologies for both alignment types (igrN, UCE/exon). In both cases, the new genus formed a distinct clade within the family Antipathidae and members of the genera Cirrhipathes and Antipathes formed separate monophyletic groups (Figures 3 A–3B). Differences between the two trees include the UCE/exon tree suggesting that Arachnopathes Milne Edwards H., 1857, and Stichopathes also share a common ancestor with Blastopathes, while in the igrN tree Stichopathes is more closely related to another lineage containing members of the Aphanipathidae Opresko, 2004, than to Blastopathes. Etymology. From the Greek “blastos”, germ, sprout, or shoot, in reference to the branch cluster features, and the commonly used suffix “pathes”. From the Latin “Medusa” in reference to thick and upward curving branches, like the snakes on the mythical gorgon’s head. Type material. Holotype, MTQ G74904, Papua New Guinea, Bismarck Sea, West New Britain Province, Kimbe Bay, Vanessa’s Reef, 35m depth, 13 March 2019 (SEM stubs MTQ G74906 to MTQ G74910, schizo- holotype NMAG 1892). Paratypes, NMAG 1893, Papua New Guinea, Bismarck Sea, West New Britain Province, Kimbe Bay, Christine’s Reef, 30m depth, 13 March 2019; MTQ G74911, Papua New Guinea, N Bismarck Sea, West New Britain Province, Kimbe Bay, Lady Di, 37m depth, 15 March 2019 (SEM stub MTQ G74912); MTQ G74913, Papua New Guinea, Bismarck Sea, West New Britain Province, Kimbe Bay Restrf Island, 30m depth, 16 March 2019 (SEM stub MTQ G74915); NMAG 1895, Papua New Guinea, Bismarck Sea, West New Britain Province, Kimbe Bay, Christine Reef, 30m depth, 16 March 2019. Type locality. Kimbe Bay, Papua New Guinea. Latitude: -5.305; Longitude: 150.124 Description. The holotype is a 1.2 m tall specimen that branches to the third order (Figure 4). The stem is 0.6 m in length, 6.3 mm in diameter near the base, and 4 mm in diameter just below the first branch cluster. First branch cluster occurs at the apex of the stem and consists of 10 elongate branches extending in different directions (Figure 5A) of varying lengths (maximum length 1.3 m) and diameters (none thicker than the stem). One first order branch is 0.6 m in length, 4 mm in diameter near the base, and 2 mm in diameter just below a second order branch cluster consisting of ~10 branches (Figure 5B), with a maximum branch length of 50 cm. Another first order branch is 1.3 m in length, 3 mm in diameter near the base, and 0.5 mm at the branch tip and does not produce a branch cluster. Another first order branch extends from the center of the branch cluster and extends 0.9 m directly upwards with a branch thickness of 4 mm near the base and 2 mm just below a second order branch cluster consisting of four branches with a maximum branch length of 65 cm. Another first order branch extends 5 cm, is 2 mm in diameter near the base and increases to 2.5 mm just below what resembles a new branch cluster consisting of three branches of different lengths and thicknesses. The longest of the three branches coming from the 5 cm branch is 0.6 m in length, 1.5 mm in diameter near the base, and 0.5 mm diameter near the tip. The second longest branch is 0.42 m in length, 0.2 mm in diameter near the base, and 0.1 mm near the tip. The shortest of the three branches is 5 cm in length, 0.8 mm in diameter near the base, and The spines (Figures 6 A–6C) on the branches and stem are smooth and laterally compressed. Polypar spines are 0.2 mm– 0.34 mm tall, are conical at right angles to branch axes with rounded apexes, and spines are spaced ~ 0.45 mm in one row (Figure 6A). Abpolypar spines are 0.12 mm– 0.24 mm tall and are triangular with distally slanted proximal edges and perpendicular or proximally slanted distal edges, and spines are spaced ~ 0.38 mm in one row (Figure 6B). Seven to eight, sometimes offset rows of spines can be counted in one view of a branch and stem, and approximately three spines can be counted in 1 mm of a spine row on a branch (Figure 6C) and stem. The polyps (Figures 7 A–7B), olive in color when alive, are arranged in a single row on thin branches (Figure 7A), and in multiple rows on the stem and thick branches (Figure 5A). In-situ measurements reveal that lateral tentacles (~ 3 mm in length, extended) are less than half the length of sagittal tentacles (~ 8 mm in length, extended) (Figure 7A). Polyps range 0.5 mm– 1.38 mm in transverse diameter and are spaced ~ 1 mm apart, resulting in approximately five polyps per 1 cm in one row (Figure 7B). The sizes of contracted and extended polyps are quite variable. ......continued on the next page MTQ—Museum of Tropical Queensland; TMAG—Tasmanian Museum of Art and Gallery; NMNH—Smithsonian National Museum of Natural History; RBINS—Royal Belgian Institute of Natural Sciences; CAS—California Academy of Sciences; ND—Not Deposited; DNA—Data Not Available. The paratypes (Figures 8 A–8E) range from 0.4 m to 0.5 m in height. The stem lengths range from 3 to 10 cm in length from basal plate to the first branch cluster. All paratypes have branch clusters (Figures 8 A–8C), 7 to 8 rows of compressed spines, tall and conical polypar spines, and triangular distally slanted abpolypar spines (Figure 8D), with polypar spine heights ranging from 0.14 mm to 0.3 mm and abpolypar spines ranging from 0.1 mm to 0.2 mm. About five polyps per 1 cm with lateral tentacles less than half the length of sagittal tentacles, with varying polyp sizes like the holotype (Figure 8E).
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- 2020
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43. Drivers of eyespot evolution in coral reef fishes
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Hemingson, Christopher R., primary, Siqueira, Alexandre C., additional, Cowman, Peter F., additional, and Bellwood, David R., additional
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- 2021
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44. Phylogenomic Analysis of Concatenated Ultraconserved Elements Reveals the Recent Evolutionary Radiation of the Fairy Wrasses (Teleostei: Labridae: Cirrhilabrus)
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Tea, Yi-Kai, primary, Xu, Xin, additional, DiBattista, Joseph D, additional, Lo, Nathan, additional, Cowman, Peter F, additional, and Ho, Simon Y W, additional
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- 2021
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45. Planktivores as trophic drivers of global coral reef fish diversity patterns
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Siqueira, Alexandre C., primary, Morais, Renato A., additional, Bellwood, David R., additional, and Cowman, Peter F., additional
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- 2021
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46. Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)
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McFadden, Catherine S, primary, Quattrini, Andrea M, additional, Brugler, Mercer R, additional, Cowman, Peter F, additional, Dueñas, Luisa F, additional, Kitahara, Marcelo V, additional, Paz-García, David A, additional, Reimer, James D, additional, and Rodríguez, Estefanía, additional
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- 2021
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47. An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives
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Cowman, Peter F., primary, Quattrini, Andrea M., additional, Bridge, Tom C.L., additional, Watkins-Colwell, Gregory J., additional, Fadli, Nur, additional, Grinblat, Mila, additional, Roberts, T. Edward, additional, McFadden, Catherine S., additional, Miller, David J., additional, and Baird, Andrew H., additional
- Published
- 2020
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48. Body size determines eyespot size and presence in coral reef fishes
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Hemingson, Christopher R., primary, Cowman, Peter F., additional, and Bellwood, David R., additional
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- 2020
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49. Solving the Coral Species Delimitation Conundrum.
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Ramírez-Portilla, Catalina, Baird, Andrew H, Cowman, Peter F, Quattrini, Andrea M, Harii, Saki, Sinniger, Frederic, and Flot, Jean-François
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CORALS ,SPECIES ,ACROPORA ,ENDANGERED ecosystems ,CORAL reef conservation ,CORAL reefs & islands ,SPECIES hybridization - Abstract
Distinguishing coral species is not only crucial for physiological, ecological, and evolutionary studies but also to enable effective management of threatened reef ecosystems. However, traditional hypotheses that delineate coral species based on morphological traits from the coral skeleton are frequently at odds with tree-based molecular approaches. Additionally, a dearth of species-level molecular markers has made species delimitation particularly challenging in species-rich coral genera, leading to the widespread assumption that interspecific hybridization might be responsible for this apparent conundrum. Here, we used three lines of evidence—morphology, breeding trials, and molecular approaches—to identify species boundaries in a group of ecologically important tabular Acropora corals. In contrast to previous studies, our morphological analysis yielded groups that were congruent with experimental crosses as well as with coalescent-based and allele sharing-based multilocus approaches to species delimitation. Our results suggest that species of the genus Acropora are reproductively isolated and independently evolving units that can be distinguished morphologically. These findings not only pave the way for a taxonomic revision of coral species but also outline an approach that can provide a solid basis to address species delimitation and provide conservation support to a wide variety of keystone organisms. [ Acropora ; coral reefs; hybridization; reproductive isolation; taxonomy.] [ABSTRACT FROM AUTHOR]
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- 2022
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50. Phylogenomic Analysis of Concatenated Ultraconserved Elements Reveals the Recent Evolutionary Radiation of the Fairy Wrasses (Teleostei: Labridae: Cirrhilabrus).
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Tea, Yi-Kai, Xu, Xin, DiBattista, Joseph D, Lo, Nathan, Cowman, Peter F, and Ho, Simon Y W
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WRASSES ,MOLECULAR phylogeny ,OSTEICHTHYES ,FAIRIES ,SEA level ,ADAPTIVE radiation - Abstract
The fairy wrasses (genus Cirrhilabrus) are among the most successful of the extant wrasse lineages (Teleostei: Labridae), with their 61 species accounting for nearly 10 |$\%$| of the family. Although species complexes within the genus have been diagnosed on the basis of coloration patterns and synapomorphies, attempts to resolve evolutionary relationships among these groups using molecular and morphological data have largely been unsuccessful. Here, we use a phylogenomic approach with a data set comprising 991 ultraconserved elements (UCEs) and mitochondrial COI to uncover the evolutionary history and patterns of temporal and spatial diversification of the fairy wrasses. Our analyses of phylogenetic signal suggest that most gene-tree incongruence is caused by estimation error, leading to poor resolution in a summary-coalescent analysis of the data. In contrast, analyses of concatenated sequences are able to resolve the major relationships of Cirrhilabrus. We determine the placements of species that were previously regarded as incertae sedis and find evidence for the nesting of Conniella , an unusual, monotypic genus, within Cirrhilabrus. Our relaxed-clock dating analysis indicates that the major divergences within the genus occurred around the Miocene–Pliocene boundary, followed by extensive cladogenesis of species complexes in the Pliocene–Pleistocene. Biogeographic reconstruction suggests that the fairy wrasses emerged within the Coral Triangle, with episodic fluctuations of sea levels during glacial cycles coinciding with shallow divergence events but providing few opportunities for more widespread dispersal. Our study demonstrates both the resolving power and limitations of UCEs across shallow timescales where there is substantial estimation error in individual gene trees.[Biogeography; concatenation; gene genealogy interrogation; gene trees; molecular dating; summary coalescent; UCEs.] [ABSTRACT FROM AUTHOR]
- Published
- 2022
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