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Increasing soil organic carbon (SOC) in croplands by switching from conventional to conservation management may be hampered by stimulated microbial decomposition under warming. Here, we test the interactive effects of agricultural management and warming on SOC persistence and underlying microbial mechanisms in a decade-long controlled experiment on a wheat-maize cropping system. Warming increased SOC content and accelerated fungal community temporal turnover under conservation agriculture (no tillage, chopped crop residue), but not under conventional agriculture (annual tillage, crop residue removed). Microbial carbon use efficiency (CUE) and growth increased linearly over time, with stronger positive warming effects after 5 years under conservation agriculture. According to structural equation models, these increases arose from greater carbon inputs from the crops, which indirectly controlled microbial CUE via changes in fungal communities. As a result, fungal necromass increased from 28 to 53%, emerging as the strongest predictor of SOC content. Collectively, our results demonstrate how management and climatic factors can interact to alter microbial community composition, physiology and functions and, in turn, SOC formation and accrual in croplands.

Managing soil organic matter (SOM) stocks to address global change challenges requires well-substantiated knowledge of SOM behavior that can be clearly communicated between scientists, management practitioners, and policy makers. However, SOM is incredibly complex and requires separation into multiple components with contrasting behavior in order to study and predict its dynamics. Numerous diverse SOM separation schemes are currently used, making cross-study comparisons difficult and hindering broad-scale generalizations. Here, we recommend separating SOM into particulate (POM) and mineral-associated (MAOM) forms, two SOM components that are fundamentally different in terms of their formation, persistence, and functioning. We provide evidence of their highly contrasting physical and chemical properties, mean residence times in soil, and responses to land use change, plant litter inputs, warming, CO2 enrichment, and N fertilization. Conceptualizing SOM into POM versus MAOM is a feasible, well-supported, and useful framework that will allow scientists to move beyond studies of bulk SOM, but also use a consistent separation scheme across studies. Ultimately, we propose the POM versus MAOM framework as the best way forward to understand and predict broad-scale SOM dynamics in the context of global change challenges and provide necessary recommendations to managers and policy makers.

Understanding the mechanisms of plant-derived carbon (C) and nitrogen (N) transformation and stabilization in soil is fundamental for predicting soil capacity to mitigate climate change and support other soil functions. The decomposition of plant residues and particulate organic matter (POM) contributes to the formation of mineral-associated (on average more stable) organic matter (MAOM) in soil. MAOM is formed from the binding of dissolved organic matter (ex vivo pathway) or microbial necromass and bioproducts (in vivo pathway) to minerals and metal colloids. Which of these two soil organic matter (SOM) stabilization pathways is more important and under which conditions remains an open question. To address this question, we propose a novel diagnostic model to describe C and N dynamics in MAOM as a function of the dynamics of residues and POM decomposition. Focusing on relations among soil compartments (i.e., modeling in phase space) rather than time trajectories allows isolating the fundamental processes underlying stabilization. Using this diagnostic model in combination with a database of 36 studies in which residue C and N were tracked into POM and MAOM, we found that MAOM is predominantly fueled by necromass produced by microbes decomposing residues and POM. The relevance of this in vivo pathway is higher in clayey soils but lower in C-rich soils and with N-poor added residues. Overall, our novel modeling in phase space proved to be a sound diagnostic tool for the mechanistic investigation of soil C dynamics and supported the current understanding of the critical role of both microbial transformation and mineral capacity for the stabilization of C in mineral soils. [ABSTRACT FROM AUTHOR]

Croplands have been the focus of substantial investigation due to their considerable potential for sequestering carbon. Understanding the potential for soil organic carbon (SOC) sequestration and necessary management strategies will be enabled with accurate process-based models. Accurately representing crop growth and agricultural practices will be critical for realistic SOC modeling. The MEMS 2 model incorporates a current understanding of SOC formation and stabilization, measurable SOC pools, and deep SOC dynamics and is seen as a highly promising tool to inform management intervention for SOC sequestration. Thus far, MEMS 2 has been developed to represent grasslands. In this study, we further developed MEMS 2 to model annual grain crops and common agricultural practices, such as irrigation, fertilization, harvesting, and tillage. Using four Ameriflux sites, we demonstrated an accurate simulation of crop growth and development. Model performance was strong for simulating aboveground biomass (index of agreement [d] range of 0.89–0.98) and green leaf area index (d from 0.90 to 0.96) across corn, soybean, and winter wheat. Good agreement with observations was also achieved for net ecosystem CO2 exchange (d from 0.90 to 0.96), evapotranspiration (d from 0.91 to 0.94), and soil temperature (d of 0.96), while discrepancy with the available soil water content data remain (d from 0.14 to 0.81 at four depths to 100 cm). While we will continue model testing and improvement, MEMS 2 (version 2.14) has now demonstrated its ability to effectively simulate the growth of common grain crops and practices [ABSTRACT FROM AUTHOR]

Croplands have been the focus of substantial investigation due to their considerable potential for sequestering carbon. Understanding the potential for soil organic carbon (SOC) sequestration and necessary management strategies will be enabled with accurate process-based models. Accurately representing crop growth and agricultural practices will be critical for realistic SOC modeling. The MEMS 2 model incorporates a current understanding of SOC formation and stabilization, measurable SOC pools, and deep SOC dynamics and is seen as a highly promising tool to inform management intervention for SOC sequestration. Thus far, MEMS 2 has been developed to represent grasslands. In this study, we further developed MEMS 2 to model annual grain crops and common agricultural practices, such as irrigation, fertilization, harvesting, and tillage. Using four Ameriflux sites, we demonstrated an accurate simulation of crop growth and development. Model performance was strong for simulating aboveground biomass (index of agreement [d] range of 0.89–0.98) and green leaf area index (d from 0.90 to 0.96) across corn, soybean, and winter wheat. Good agreement with observations was also achieved for net ecosystem CO2 exchange (d from 0.90 to 0.96), evapotranspiration (d from 0.91 to 0.94), and soil temperature (d of 0.96), while discrepancy with the available soil water content data remain (d from 0.14 to 0.81 at four depths to 100 cm). While we will continue model testing and improvement, MEMS 2 (version 2.14) has now demonstrated its ability to effectively simulate the growth of common grain crops and practices [ABSTRACT FROM AUTHOR]

Pyrogenic carbon (PyC), the product of incomplete biomass combustion, is a key component of soil organic carbon (SOC) because it can persist in soils for centuries to millennia. Quantifying PyC across large spatial scales remains a significant challenge in constraining the global carbon cycle. We measured PyC in topsoils across Europe using molecular marker (benzene polycarboxylic acids, BPCA) and spectroscopic techniques (Diffuse Reflectance Infrared Fourier Transform Spectroscopy, DRIFTS). We developed a calibration between BPCA and DRIFTS, but the calibration was less reliable (Y-variance explained = 0.62) than previous reports due to low soil PyC content and heterogeneity of soil matrices. Thus, we performed multiple regressions to identify drivers of PyC distribution using only the measured BPCA data. PyC content varied widely among soils, contributing 0-24% of SOC. Organic carbon was the strongest predictor of soil PyC content, but mean annual temperature, clay, and cation exchange capacity also emerged as predictors. PyC contributes a smaller proportion of SOC in European soils compared to other geographic regions. Comparing soil PyC measurements to PyC production rates in high latitude and Mediterranean regions suggests that transport, degradation, and recombustion are important mechanisms regulating soil PyC accumulation. Keywords: benzene polycarboxylic acids, black carbon, carbon cycling, European soils, midinfrared spectroscopy, pyrogenic carbon, soil organic carbon, soil organic matter., Introduction Understanding and managing soil organic carbon (SOC) is key to maintaining ecosystem services provided by soils and mitigating adverse effects of climate change (Smith et al. 2015). However, SOC [...]

Fractionation of soil organic carbon (SOC) is crucial for mechanistic understanding and modeling of soil organic matter decomposition and stabilization processes. It is often aimed at separating the bulk SOC into fractions with varying turnover rates, but a comprehensive comparison of methods to achieve this is lacking. In this study, a total of 20 different SOC fractionation methods were tested by participating laboratories for their suitability to isolate fractions with varying turnover rates, using agricultural soils from three experimental sites with vegetation change from C3 to C4 22–36 years ago. Enrichment of C4-derived carbon was traced and used as a proxy for turnover rates in the fractions. Methods that apply a combination of physical (density, size) and chemical (oxidation, extraction) fractionation were identified as most effective in separating SOC into fractions with distinct turnover rates. Coarse light SOC separated by density fractionation was the most C4-carbon enriched fraction, while oxidation-resistant SOC left after extraction with NaOCl was the least C4-carbon enriched fraction. Surprisingly, even after 36 years of C4 crop cultivation in a temperate climate, no method was able to isolate a fraction with more than 76% turnover, which challenges the link to the most active plant-derived carbon pools in models. Particles with density >2.8 g cm−3 showed similar C4-carbon enrichment as oxidation-resistant SOC, highlighting the importance of sesquioxides for SOC stabilization. The importance of clay and silt-sized particles (

Soil nutrient availability has a strong influence on the fate of soil carbon (C) during microbial decomposition, contributing to Earth's C balance. While nutrient availability itself can impact microbial physiology and C partitioning between biomass and respiration during soil organic matter decomposition, the availability of labile C inputs may mediate the response of microorganisms to nutrient additions. As soil organic matter is decomposed, microorganisms retain or release C, nitrogen (N) or phosphorus (P) to maintain a stoichiometric balance. Although the concept of a microbial stoichiometric homeostasis has previously been proposed, microbial biomass CNP ratios are not static, and this may have very relevant implications for microbial physiological activities. Here, we tested the hypothesis that N, P and potassium (K) nutrient additions impact C cycling in a tropical soil due to microbial stoichiometric constraints to growth and respiration, and that the availability of energy-rich labile organic matter in the soil (i.e. leaf litter) mediates the response to nutrient addition. We incubated tropical soil from French Guiana with a 13C labeled leaf litter addition and with mineral nutrient additions of +K, +N, +NK, +PK and +NPK for 30 days. We found that litter additions led to a ten-fold increase in microbial respiration and a doubling of microbial biomass C, along with greater microbial N and P content. We found some evidence that P additions increased soil CO2 fluxes. Additionally, we found microbial biomass CP and NP ratios varied more widely than CN in response to nutrient and organic matter additions, with important implications for the role of microorganisms in C cycling. The addition of litter did not prime soil organic matter decomposition, except in combination with +NK fertilization, indicating possible P-mining of soil organic matter in this P-poor tropical soil. Together, these results point toward an ultimate labile organic substrate limitation of soil microorganisms in this tropical soil, but also indicate a complex interaction between C, N, P and K availability. This highlights the difference between microbial C cycling responses to N, P, or K additions in the tropics and explains why coupled C, N and P cycle modeling efforts cannot rely on strict microbial stoichiometric homeostasis as an underlying assumption.

Soil organic matter (SOM) supports the Earth's ability to sustain terrestrial ecosystems, provide food and fiber, and retains the largest pool of actively cycling carbon. Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have lost SOC as a result of land use practices, yet there are compensatory opportunities to enhance productivity and SOC storage in degraded lands through improved management practices. Large areas with and without intentional management are also being subjected to rapid changes in climate, making many SOC stocks vulnerable to losses by decomposition or disturbance. In order to quantify potential SOC losses or sequestration at field, regional, and global scales, measurements for detecting changes in SOC are needed. Such measurements and soil-management best practices should be based on well established and emerging scientific understanding of processes of C stabilization and destabilization over various timescales, soil types, and spatial scales. As newly engaged members of the International Soil Carbon Network, we have identified gaps in data, modeling, and communication that underscore the need for an open, shared network to frame and guide the study of SOM and SOC and their management for sustained production and climate regulation.

Terrestrial ecosystems are often burned by both managed and wildfires. During a fire, the above-ground biomass that would typically accumulate and be decomposed as litter on the soil surface is combusted. Pyrogenic organic matter (PyOM) remaining after a fire is a considerably more recalcitrant organic input to the soil than fresh litter. The activity and community composition of soil organisms responsible for decomposition of organic matter and nutrient recycling in the soil could thus be affected by altered resource availability caused by frequent fires. We examined the effect of PyOM vs. fresh litter inputs to soil biota at both an annually burned and an infrequently burned tallgrass prairie site by tracing 13C- and 15N-labelled litter and PyOM into growing plant roots, microbial phospholipid fatty acids (PLFAs) and soil nematodes for 1 year. Litter-derived C or N was incorporated into microbes, nematodes and roots, while PyOM contributed minimally to soil microbes and plant roots and was not detectable in nematodes. Soil microbial and nematode abundances in the PyOM amended plots did not significantly differ from the bare soil plots, but nematodes were more abundant and microbial PLFAs less abundant in litter-amended plots. The annually burned site had less predator and omnivore nematodes, with increased abundance of microbial feeders and greater microbial uptake of litter C. An alteration of the soil food web structure caused by burning and the removal of the litter layer, along with the accumulation of non-microbially decomposed PyOM in the soil, contributes to the limitation of N cycling in frequently burned ecosystems. A Lay Summary is available for this article.

In the past few decades, there has been an evolution in our understanding of soil organic matter (SOM) dynamics from one of inherent biochemical recalcitrance to one deriving from plant‐microbe‐mineral interactions. This shift in understanding has been driven, in part, by influential conceptual frameworks which put forth hypotheses about SOM dynamics. Here, we summarize several focal conceptual frameworks and derive from them six controls related to SOM formation, (de)stabilization, and loss. These include: (a) physical inaccessibility; (b) organo‐mineral and ‐metal stabilization; (c) biodegradability of plant inputs; (d) abiotic environmental factors; (e) biochemical reactivity and diversity; and (f) microbial physiology and morphology. We then review the empirical evidence for these controls, their model representation, and outstanding knowledge gaps. We find relatively strong empirical support and model representation of abiotic environmental factors but disparities between data and models for biochemical reactivity and diversity, organo‐mineral and ‐metal stabilization, and biodegradability of plant inputs, particularly with respect to SOM destabilization for the latter two controls. More empirical research on physical inaccessibility and microbial physiology and morphology is needed to deepen our understanding of these critical SOM controls and improve their model representation. The SOM controls are highly interactive and also present some inconsistencies which may be reconciled by considering methodological limitations or temporal and spatial variation. Future conceptual frameworks must simultaneously refine our understanding of these six SOM controls at various spatial and temporal scales and within a hierarchical structure, while incorporating emerging insights. This will advance our ability to accurately predict SOM dynamics. Plain Language Summary: Soil organic matter, the remains of plants, animals, and microbes in the soil, performs many important functions for humans and ecosystems, providing habitat for animals, nutrients for plants, climate change buffering, and structure for soil animals and human structures. Thus, it is important to understand how soil organic matter is formed, stabilized, and lost. Here, we review conceptual frameworks that have contributed to our understanding of soil organic matter over the past 20 years. We evaluate their support in experiments and also how well represented they are in computer models. We find the least support and representation for controls of soil organic matter associated with properties of microbes and physical barriers between microbes and soil organic matter. These and novel soil organic matter controls require more research for better understanding of soil organic matter functions. Key Points: Soil organic matter (SOM) research has been advanced by conceptual frameworksConceptual frameworks are associated with different SOM controls with variable empirical support and model representationMicrobial physiology and morphology and physical inaccessibility, as SOM controls, require more empirical work and model representation [ABSTRACT FROM AUTHOR]

The chemical transformations that occur during litter decomposition are key processes for soil organic matter formation and terrestrial biogeochemistry; yet we still lack complete understanding of these chemical processes. Thus, we monitored the chemical composition of Andropogon gerardii (big bluestem grass) litter residue over a 36 month decomposition experiment in a prairie ecosystem using: traditional wet chemical fractionation based upon digestibility, solid state 13C nuclear magnetic resonance (NMR) spectroscopy and Fourier transform infrared (FTIR) spectroscopy. The goals of this study were to (1) determine the chemical changes occurring during A. gerardii litter decomposition, and (2) compare the information obtained from each method to assess agreement. Overall, we observed a 97 % mass loss of the original litter, through a two-stage decomposition process. In the first stage, within 12 months, non-structural, cellulose and hemicellulose fractions not encrusted in lignin were preferentially and rapidly lost, while the acid unhydrolyzable residue (AUR) and microbial components increased. During the second stage, 12–36 months, all wet chemical fraction masses decreased equivalently and slowly with time, and the AUR and the lignin-encrusted cellulose fractions decomposition rates were comparable to each other. Method comparisons revealed that wet chemical fractionation did not accurately follow the initial litter structures, particularly lignin, likely because of chemical transformations and accumulation of microbial biomass. FTIR and NMR were able to determine bulk structural characteristics, and aid in elucidating chemical transformations but lacked the ability to measure absolute quantities of structural groups. As a result, we warn from the sole use of wet chemical methods, and strongly encourage coupling them with spectroscopic methods. Our results overall support the traditional chemical model of selective preservation of lignin, but shows that this is limited to the early stages of decomposition, while lignin is not selectively preserved at subsequent stages. Our study also provides important evidence regarding the impact of chemically different litter structures on decomposition rates and pathways.

Among options for atmospheric CO2 removal, sequestering soil organic carbon (SOC) via improved grazing management is a rare opportunity because it is scalable across millions of globally grazed acres, low cost, and has high technical potential. Decades of scientific research on grazing and SOC has failed to form a cohesive understanding of how grazing management affects SOC stocks and their distribution between particulate (POM) and mineral‐associated organic matter (MAOM)—characterized by different formation and stabilization pathways—across different climatic contexts. As we increasingly look to grazing management for SOC sequestration on grazinglands to bolster our climate change mitigation efforts, we need a clear and collective understanding of grazing management's impact on pathways of SOC change to inform on‐the‐ground management decisions. We set out to review the effects of grazing management on SOC through a unified plant ecophysiology and soil biogeochemistry conceptual framework, where elements such as productivity, input quality, soil mineral capacity, and climate variables such as aridity co‐govern SOC accumulation and distribution into POM and MAOM. To maximize applicability to grazingland managers, we discuss how common management levers that drive overall grazing pattern, including timing, intensity, duration, and frequency can be used to optimize mechanistic pathways of SOC sequestration. We discuss important research needs and measurement challenges, and highlight how our conceptual framework can inform more robust research with greater applicability for maximizing the use of grazing management to sequester SOC. [ABSTRACT FROM AUTHOR]