305 results on '"Costello MJ"'
Search Results
2. Effect of Non-uniform Fibre Packing on Membrane Heat and Mass Transfer
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Chemeca 92 (20th : 1992 : Canberra, A.C.T.), Costello, MJ, Hogan, PA, Schofield, RW, and Fane, AG
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- 1992
3. Towards a global list of accepted species V. The devil is in the detail
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Pyle, RL, Barik, SK, Christidis, L, Conix, S, Costello, MJ, van Dijk, PP, Garnett, ST, Hobern, D, Kirk, PM, Lien, AM, Orrell, TM, Remsen, D, Thomson, SA, Wambiji, N, Zachos, FE, Zhang, Z-Q, Thiele, KR, Pyle, RL, Barik, SK, Christidis, L, Conix, S, Costello, MJ, van Dijk, PP, Garnett, ST, Hobern, D, Kirk, PM, Lien, AM, Orrell, TM, Remsen, D, Thomson, SA, Wambiji, N, Zachos, FE, Zhang, Z-Q, and Thiele, KR
- Published
- 2021
4. Computers and the orthodontist
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Costello, MJ
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- 1995
5. Principles for creating a single authoritative list of the world's species
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Garnett, ST, Christidis, L, Conix, S, Costello, MJ, Zachos, FE, Banki, OS, Bao, Y, Barik, SK, Buckeridge, JS, Hobern, D, Lien, A, Montgomery, N, Nikolaeva, S, Pyle, RL, Thomson, SA, van Dijk, PP, Whalen, A, Zhang, Z-Q, Thiele, KR, Garnett, ST, Christidis, L, Conix, S, Costello, MJ, Zachos, FE, Banki, OS, Bao, Y, Barik, SK, Buckeridge, JS, Hobern, D, Lien, A, Montgomery, N, Nikolaeva, S, Pyle, RL, Thomson, SA, van Dijk, PP, Whalen, A, Zhang, Z-Q, and Thiele, KR
- Abstract
Lists of species underpin many fields of human endeavour, but there are currently no universally accepted principles for deciding which biological species should be accepted when there are alternative taxonomic treatments (and, by extension, which scientific names should be applied to those species). As improvements in information technology make it easier to communicate, access, and aggregate biodiversity information, there is a need for a framework that helps taxonomists and the users of taxonomy decide which taxa and names should be used by society whilst continuing to encourage taxonomic research that leads to new species discoveries, new knowledge of species relationships, and the refinement of existing species concepts. Here, we present 10 principles that can underpin such a governance framework, namely (i) the species list must be based on science and free from nontaxonomic considerations and interference, (ii) governance of the species list must aim for community support and use, (iii) all decisions about list composition must be transparent, (iv) the governance of validated lists of species is separate from the governance of the names of taxa, (v) governance of lists of accepted species must not constrain academic freedom, (vi) the set of criteria considered sufficient to recognise species boundaries may appropriately vary between different taxonomic groups but should be consistent when possible, (vii) a global list must balance conflicting needs for currency and stability by having archived versions, (viii) contributors need appropriate recognition, (ix) list content should be traceable, and (x) a global listing process needs both to encompass global diversity and to accommodate local knowledge of that diversity. We conclude by outlining issues that must be resolved if such a system of taxonomic list governance and a unified list of accepted scientific names generated are to be universally adopted.
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- 2020
6. Biogeography of polychaete worms (Annelida) of the world
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Pamungkas, J, primary, Glasby, CJ, additional, and Costello, MJ, additional
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- 2021
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7. Global biogeography of marine amphipod crustaceans: latitude, regionalization, and beta diversity
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Arfianti, T, primary and Costello, MJ, additional
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- 2020
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8. Progress in the discovery of extant and fossil bryozoans
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Pagès-Escolà, M, primary, Bock, PE, additional, Gordon, DP, additional, Wilson, S, additional, Linares, C, additional, Hereu, B, additional, and Costello, MJ, additional
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- 2020
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9. INVASIVESNET towards an international association for open knowledge on invasive alien species
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Lucy, FE, Roy, H, Simpson, A, Carlton, JT, Hanson, JM, Magellan, K, Campbell, M, Costello, MJ, Pagad, S, Hewitt, CL, McDonald, J, Cassey, P, Thomaz, SM, Katsanevakis, S, Zenetos, A, Tricarico, E, Boggero, A, Groom, QJ, Adriaens, T, Vanderhoeven, S, Torchin, M, Hufbauer, R, Fuller, P, Carman, MR, Conn, DB, Vitule, JRS, Canning-Clode, J, Galil, BS, Ojaveer, H, Bailey, SA, Therriault, TW, Claudi, R, Gazda, A, Dick, JTA, Caffrey, J, Witt, A, Kenis, M, Lehtiniemi, M, Helmisaari, H, Panov, VE, Lucy, FE, Roy, H, Simpson, A, Carlton, JT, Hanson, JM, Magellan, K, Campbell, M, Costello, MJ, Pagad, S, Hewitt, CL, McDonald, J, Cassey, P, Thomaz, SM, Katsanevakis, S, Zenetos, A, Tricarico, E, Boggero, A, Groom, QJ, Adriaens, T, Vanderhoeven, S, Torchin, M, Hufbauer, R, Fuller, P, Carman, MR, Conn, DB, Vitule, JRS, Canning-Clode, J, Galil, BS, Ojaveer, H, Bailey, SA, Therriault, TW, Claudi, R, Gazda, A, Dick, JTA, Caffrey, J, Witt, A, Kenis, M, Lehtiniemi, M, Helmisaari, H, and Panov, VE
- Abstract
In a world where invasive alien species (IAS) are recognised as one of the major threats to biodiversity, leading scientists from five continents have come together to propose the concept of developing an international association for open knowledge and open data on IAS—termed “INVASIVESNET”. This new association will facilitate greater understanding and improved management of invasive alien species (IAS) and biological invasions globally, by developing a sustainable network of networks for effective knowledge exchange. In addition to their inclusion in the CBD Strategic Plan for Biodiversity, the increasing ecological, social, cultural and economic impacts associated with IAS have driven the development of multiple legal instruments and policies. This increases the need for greater co-ordination, co-operation, and information exchange among scientists, management, the community of practice and the public. INVASIVESNET will be formed by linking new and existing networks of interested stakeholders including international and national expert working groups and initiatives, individual scientists, database managers, thematic open access journals, environmental agencies, practitioners, managers, industry, non-government organisations, citizens and educational bodies. The association will develop technical tools and cyberinfrastructure for the collection, management and dissemination of data and information on IAS create an effective communication platform for global stakeholders and promote coordination and collaboration through international meetings, workshops, education, training and outreach. To date, the sustainability of many strategic national and international initiatives on IAS have unfortunately been hampered by time-limited grants or funding cycles. Recognising that IAS initiatives need to be globally coordinated and ongoing, we aim to develop a sustainable knowledge sharing association to connect the outputs of IAS research and to inform the
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- 2016
10. PESI - a taxonomic backbone for Europe
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de Jong, Y, Kouwenberg, J, Boumans, L, Hussey, C, Hyam, R, Nicolson, N, Kirk, P, Paton, A, Michel, E, Guiry, MD, Boegh, PS, Glöckler, F, Korb, G, Ring, C, Hagedorn, G, Häuser, C, Aktaç, N, Asan, A, Ardelean, A, Borges, PA, Dhora, D, De Wever, A, Khachatryan, H, Malicky, M, Ibrahimov, S, Tuzikov, A, Moncheva, S, Spassov, N, Chobot, K, Popov, A, Boršić, I, Sfenthourakis, S, Kõljalg, U, Uotila, P, Olivier, G, Legakis, A, Dauvin, JC, Tarkhnishvili, D, Chaladze, G, Tuerkay, M, Peregovits, L, Gudmundsson, G, Ólafsson, E, Lysaght, L, Galil, BS, Raimondo, FM, Domina, G, Stoch, F, Minelli, A, Walisch, T, Spungis, V, Budrys, E, Olenin, S, Turpel, A, Krpach, V, Gambin, MT, Ungureanu, L, Karaman, G, Kleukers, RM, Stur, E, Aagaard, K, Valland, N, Moen, TL, M de Frias Martins, A, Bogdanowicz, W, Tykarski, P, Węsławski, JM, Kędra, M, Abreu, AD, Silva, R, Medvedev, S, Ryss, A, Šimić, S, Marhold, K, Stloukal, E, Tome, D, Ramos, MA, Gonseth, Y, Valdés, B, Pina, F, Kullander, S, Telenius, A, Tschudin, P, Sergeyeva, O, Vladymyrov, V, Rizun, VB, Raper, C, Lear, D, Stoev, P, Penev, L, Rubio, AC, Pedersen, HÆ, Backeljau, T, Saarenmaa, H, Ulenberg, S, Ouvrard, DNM, Enghoff, H, von Raab-Straube, E, Güntsch, A, Geoffroy, M, Müller, A, Kohlbecker, A, Berendsohn, W, Appeltans, W, Arvanitidis, C, Vanhoorne, B, Declerck, J, Vandepitte, L, Hernandez, F, Nash, R, Costello, MJ, Bezard-Falgas, P, Bourgoin, T, Wetzel, FT, de Jong, Y, Kouwenberg, J, Boumans, L, Hussey, C, Hyam, R, Nicolson, N, Kirk, P, Paton, A, Michel, E, Guiry, MD, Boegh, PS, Glöckler, F, Korb, G, Ring, C, Hagedorn, G, Häuser, C, Aktaç, N, Asan, A, Ardelean, A, Borges, PA, Dhora, D, De Wever, A, Khachatryan, H, Malicky, M, Ibrahimov, S, Tuzikov, A, Moncheva, S, Spassov, N, Chobot, K, Popov, A, Boršić, I, Sfenthourakis, S, Kõljalg, U, Uotila, P, Olivier, G, Legakis, A, Dauvin, JC, Tarkhnishvili, D, Chaladze, G, Tuerkay, M, Peregovits, L, Gudmundsson, G, Ólafsson, E, Lysaght, L, Galil, BS, Raimondo, FM, Domina, G, Stoch, F, Minelli, A, Walisch, T, Spungis, V, Budrys, E, Olenin, S, Turpel, A, Krpach, V, Gambin, MT, Ungureanu, L, Karaman, G, Kleukers, RM, Stur, E, Aagaard, K, Valland, N, Moen, TL, M de Frias Martins, A, Bogdanowicz, W, Tykarski, P, Węsławski, JM, Kędra, M, Abreu, AD, Silva, R, Medvedev, S, Ryss, A, Šimić, S, Marhold, K, Stloukal, E, Tome, D, Ramos, MA, Gonseth, Y, Valdés, B, Pina, F, Kullander, S, Telenius, A, Tschudin, P, Sergeyeva, O, Vladymyrov, V, Rizun, VB, Raper, C, Lear, D, Stoev, P, Penev, L, Rubio, AC, Pedersen, HÆ, Backeljau, T, Saarenmaa, H, Ulenberg, S, Ouvrard, DNM, Enghoff, H, von Raab-Straube, E, Güntsch, A, Geoffroy, M, Müller, A, Kohlbecker, A, Berendsohn, W, Appeltans, W, Arvanitidis, C, Vanhoorne, B, Declerck, J, Vandepitte, L, Hernandez, F, Nash, R, Costello, MJ, Bezard-Falgas, P, Bourgoin, T, and Wetzel, FT
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- 2015
11. Peer Review #2 of "The influence of finfish aquaculture on benthic fish and crustacean assemblages in Fitzgerald Bay, South Australia (v0.2)"
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Costello, MJ, additional
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- 2015
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12. Development of sustainable authoritative online species databases
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Costello, MJ, Boxshall, GA, Boyko, CB, Høeg, Jens Thorvald, Markham, J, Appletans, W, Costello, MJ, Boxshall, GA, Boyko, CB, Høeg, Jens Thorvald, Markham, J, and Appletans, W
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- 2010
13. How can we best make authoritative biological information available online?
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Costello, MJ, Boxshall, GA, Boyko, CB, Høeg, Jens Thorvald, Markham, J, Appletans, W, Costello, MJ, Boxshall, GA, Boyko, CB, Høeg, Jens Thorvald, Markham, J, and Appletans, W
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- 2009
14. Distinguishing marine habitat classification concepts for ecological data management
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Costello, MJ, primary
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- 2009
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15. MacroBen integrated database on benthic invertebrates of European continental shelves: a tool for large-scale analysis across Europe
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Vanden Berghe, E, primary, Claus, S, additional, Appeltans, W, additional, Faulwetter, S, additional, Arvanitidis, C, additional, Somerfield, PJ, additional, Aleffi, IF, additional, Amouroux, JM, additional, Anisimova, N, additional, Bachelet, G, additional, Cochrane, SJ, additional, Costello, MJ, additional, Craeymeersch, J, additional, Dahle, S, additional, Degraer, S, additional, Denisenko, S, additional, Dounas, C, additional, Duineveld, G, additional, Emblow, C, additional, Escaravage, V, additional, Fabri, MC, additional, Fleischer, D, additional, Grémare, A, additional, Herrmann, M, additional, Hummel, H, additional, Karakassis, I, additional, Kedra, M, additional, Kendall, M, additional, Kingston, P, additional, Kotwicki, L, additional, Labrune, C, additional, Laudien, J, additional, Nevrova, EL, additional, Occhipinti-Ambrogi, A, additional, Olsgard, F, additional, Palerud, R, additional, Petrov, A, additional, Rachor, E, additional, Revkov, N, additional, Rumohr, H, additional, Sardá, R, additional, Sistermans, WCH, additional, Speybroeck, J, additional, Janas, U, additional, Van Hoey, G, additional, Vincx, M, additional, Whomersley, P, additional, Willems, W, additional, Wlodarska-Kowalczuk , M, additional, Zenetos, A, additional, Zettler, ML, additional, and Heip, CHR, additional
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- 2009
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16. Biological geography of the European seas: results from the MacroBen database
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Arvanitidis, C, primary, Somerfield, PJ, additional, Rumohr, H, additional, Faulwetter, S, additional, Valavanis, V, additional, Vasileiadou, A, additional, Chatzigeorgiou, G, additional, Vanden Berghe, E, additional, Vanaverbeke, J, additional, Labrune, C, additional, Grémare, A, additional, Zettler, ML, additional, Kedra, M, additional, Wlodarska-Kowalczuk, M, additional, Aleffi, IF, additional, Amouroux, JM, additional, Anisimova, N, additional, Bachelet, G, additional, Büntzow, M, additional, Cochrane, SJ, additional, Costello, MJ, additional, Craeymeersch, J, additional, Dahle, S, additional, Degraer, S, additional, Denisenko, S, additional, Dounas, C, additional, Duineveld, G, additional, Emblow, C, additional, Escavarage, V, additional, Fabri, MC, additional, Fleischer, D, additional, Gray, JS, additional, Heip, CHR, additional, Herrmann, M, additional, Hummel, H, additional, Janas, U, additional, Karakassis, I, additional, Kendall, MA, additional, Kingston, P, additional, Kotwicki, L, additional, Laudien, J, additional, Mackie, ASY, additional, Nevrova, EL, additional, Occhipinti-Ambrogi, A, additional, Oliver, PG, additional, Olsgard, F, additional, Palerud, R, additional, Petrov, A, additional, Rachor, E, additional, Revkov, NK, additional, Rose, A, additional, Sardá, R, additional, Sistermans, WCH, additional, Speybroeck, J, additional, Van Hoey, G, additional, Vincx, M, additional, Whomersley, P, additional, Willems, W, additional, and Zenetos, A, additional
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- 2009
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17. Temporal variability and intensity of grazing: a mesocosm experiment
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Atalah, J, primary, Anderson, MJ, additional, and Costello, MJ, additional
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- 2007
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18. MedOBIS: biogeographic information system for the eastern Mediterranean and Black Sea
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Arvanitidis, C, primary, Valavanis, VD, additional, Eleftheriou, A, additional, Costello, MJ, additional, Faulwetter, S, additional, Gotsis, P, additional, Kitsos, MS, additional, Kirmtzoglou, I, additional, Zenetos, A, additional, Petrov, A, additional, Galil, B, additional, and Papageorgiou, N, additional
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- 2006
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19. Ocean biodiversity informatics: a new era in marine biology research and management
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Costello, MJ, primary and Vanden Berghe, E, additional
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- 2006
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20. European marine biodiversity inventory and taxonomic resources: state of the art and gaps in knowledge
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Costello, MJ, primary, Bouchet, P, additional, Emblow, CS, additional, and Legakis, A, additional
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- 2006
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21. REGIONAL NEUROTRANSMITTER RESPONSES AFTER ACUTE AND CHRONIC ELECTROCONVULSIVE SHOCK
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Andrea Mele, Costello Mj, Agu Pert, Paul Glue, and David J. Nutt
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Male ,medicine.medical_specialty ,Microdialysis ,dopamine ,electroconvulsive shock ,microdialysis ,noradrenaline ,rat ,regional responses ,Striatum ,Nucleus accumbens ,chemistry.chemical_compound ,Norepinephrine ,Dopamine ,Internal medicine ,Basal ganglia ,medicine ,Animals ,Neurotransmitter ,Pharmacology ,Brain Chemistry ,Electroshock ,Neurotransmitter Agents ,Chemistry ,Homovanillic acid ,Homovanillic Acid ,Rats, Inbred Strains ,Hydroxyindoleacetic Acid ,Rats ,Endocrinology ,Monoamine neurotransmitter ,3,4-Dihydroxyphenylacetic Acid ,Neuroscience ,Dialysis ,medicine.drug - Abstract
Regional neurotransmitter changes after acute and chronic electroconvulsive shock (ECS) were studied using the technique of repeated microdialysis. Microdialysis was carried out on alternate sides of the brains of anaesthetised rats before and during the first and the eighth ECS or sham (control) treatments. Extracellular fluid release of monoamines and their metabolites was measured in the frontal cortex, striatum and nucleus accumbens using HPLC with electrochemical detection. The first ECS produced selective regional responses, shown by increased concentrations of noradrenaline (NA) and dopamine (DA) in frontal cortex, by unchanged DA content in striatum, and by a small rise in NA and a fall in DA concentrations in nucleus accumbens. Concentrations of metabolites increased after ECS in all regions studied, and for homovanillic acid and dihydroxyphenylacetic acid, the temporal pattern of these changes did not resemble that of DA. Comparison of neurotransmitter responses as per cent of baseline release after the first and eighth ECS treatments showed they were identical. Basal release of monoamines and metabolites before the first ECS or sham treatment was similar in all regions studied. Prior to the eighth treatment, basal release of NA in the frontal cortex and DA in the striatum was elevated in the ECS-treated animals, while basal release of NA in the nucleus accumbens was reduced in both ECS-and sham-treated animals. These data suggest that acute and chronic ECS have different and region-specific effects on neurotransmitter release, although the overall pattern of these responses is not changed by chronic treatment. The catecholamine-releasing actions of ECS, and the changes in basal release of neurotransmitters seen after chronic treatment may contribute to its therapeutic effects.
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- 1990
22. Morphology of the normal human lens
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Taylor, VL, primary, Al-Ghoul, KJ, additional, Lane, CW, additional, Davis, VA, additional, Kuszak, JR, additional, and Costello, MJ, additional
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- 1996
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23. Exposure to tobacco marketing and support for tobacco control policies.
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Hammond D, Costello MJ, Fong GT, and Topham J
- Abstract
OBJECTIVES: To examine the salience of tobacco marketing on postsecondary campuses and student support for tobacco control policies. METHODS: Face-to-face surveys were conducted with 1690 students at 3 universities in southwestern Ontario. RESULTS: Virtually all (97%) students reported noticing tobacco marketing in the past year, and 35% reported noticing marketing on campus. There was strong support for smoke-free restrictions on campus, including restaurants and bars (82%), and for prohibitions on campus marketing. The presence of campus policies was associated with reduced exposure to marketing and increased policy support. CONCLUSIONS: There is strong support among students to remove tobacco marketing from campus and to introduce comprehensive smoke-free restrictions. [ABSTRACT FROM AUTHOR]
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- 2006
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24. Amphipod fauna of the sponges Halichondria panicea and Hymeniaci-don perleve in Lough Hyne, Ireland
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Costello, MJ, primary and Myers, AA, additional
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- 1987
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25. Climate change adaptation through an integrative lens in Aotearoa New Zealand
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Lawrence, J, Wreford, Anita, Blackett, P, Hall, D, Woodward, A, Awatere, S, Livingston, ME, Macinnis-Ng, C, Walker, S, Fountain, Joanna, Costello, MJ, Ausseil, A-GE, Watt, MS, Dean, SM, Cradock-Henry, NA, Zammit, C, and Milfont, TL
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- 2023
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26. Australasia
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Lawrence, J, Mackey, B, Chiew, F, Costello, MJ, Hennessey, K, Lansbury, N, Nidumolu, UB, Pecl, G, Rickards, L, Tapper, N, Woodward, A, Wreford, Anita, Alexandra, J, Ausseil, A-G, Awatere, S, Bardsley, D, Bell, R, Blackett, P, Boulter, S, Collins, D, Cradock-Henry, N, Creamer, S, Darbyshire, R, Dean, S, Di Luca, A, Dowdy, A, Fountain, Joanna, Grose, M, Hajkowicz, S, Hall, D, Harris, S, Hayman, P, Hodgkinson, J, Hussey, K, Jones, R, King, D, Linnenluecke, M, Livengood, E, Livingston, M, Macinnis-Ng, C, McFadgen, B, McMichael, C, Milfont, T, Moggridge, B, Monks, A, Morrison, S, Mosby, V, Onyango, E, Paddam, S, Pearce, G, Pearce, P, Ranasinghe, R, Schoeman, D, Tomlinson, R, Walker, S, Watt, M, Westra, S, Wise, R, Zammit, C, Pörtner, H-O, Roberts, DC, Tignor, M, Poloczanska, ES, Mintenbeck, K, Alegría, A, Craig, M, Langsdorf, S, Löschke, S, Möller, V, Okem, A, Rama, B, Hoegh-Guldberg, O, and Wratt, D
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- 2023
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27. The Ocean Sampling Day Consortium
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Oleksandra Bobrova, Petra ten Hoopen, Rodrigo Costa, Rania Siam, Rehab Z. Abdallah, Jorge A. Herrera Silveira, Catarina Magalhães, Nedime Serakinci, Marie E. DeLorenzo, Riccardo Rosselli, Paul Malthouse, Lise Øvreås, Eyjólfur Reynisson, Susan Gebbels, Francesca Malfatti, Frank Oliver Glöckner, Federico M. Lauro, Hans Erik Karlsen, David Wallom, Christian Jeanthon, Mark J. Costello, Fergal O'Gara, Nadezhda Todorova, Ana C. Costa, Monia El Bour, Paul D. van Ruth, Ivaylo Kostadinov, Martin Ostrowski, Jed A. Fuhrman, Viggo Marteinsson, Thierry Cariou, Hiroyuki Ogata, Maria Luiza Pedrotti, Emilie Villar, Federico Baltar, Sandi Orlić, Valentina Turk, Katja Lehmann, Dawn Field, Renzo Kottmann, Florence Jude-Lemeilleur, Daniel Vaulot, Alessandro Vezzi, Neil M Davies, Mahrous M. Kandil, Véronique Berteaux-Lecellier, Christopher D. Sinigalliano, Timothy W. Davis, Peter N. Golyshin, Stéphane L'Haridon, Jonathan A. Martinez, Sandra Ramos, Pascal Conan, Ma. Leopoldina Aguirre-Macedo, Antonio Fernandez-Guerra, Soumya Essayeh, Clara Loureiro, Edvardsen Bente, Noureddine Boukhatem, Rachelle M. Jensen, Sophie Pitois, Bouchra Chaouni, Kate Munnik, Anke Kremp, Stephane Pesant, Roberto Danovaro, Cecilia Alonso, Said Barrijal, Jodie van de Kamp, Michail M. Yakimov, Nicole J. Poulton, Zackary I. Johnson, Adriana Zingone, Bernardo Duarte, Ilkay Salihoglu, Paraskevi N. Polymenakou, Jack A. Gilbert, Melody S. Clark, Ian Salter, Hassan Ghazal, Julie LaRoche, J. Mortelmans, Ranjith Edirisinghe, Grazia Marina Quero, Dion Matthew Frederick Frampton, Isabel Caçador, Georgios Tsiamis, Declan C. Schroeder, Jamie Hinks, Ana Martins, Noga Stambler, Rachel Collin, João Canning-Clode, Tinkara Tinta, Mesude Bicak, Scott Jones, Valentina Amaral, Matthias S. Ullrich, Gunnar Gerdts, Klaas Deneudt, Michael Steinke, Mohamed Bennani, Rafael Santana, Fabio De Pascale, Jennifer Tolman, Juan Iriberri, Levente Bodrossy, Abderrahim Bouali, Antonella Penna, Bruno Cataletto, Josep M. Gasol, Florencia Biancalana, Maribeth L. Gidley, Stephen A. Jackson, Mahmut Cerkez Ergoren, Carolin R. Löscher, Antje Wichels, Ventzislav Karamfilov, R. Eric Collins, Sara Ettamimi, Riccardo Schiavon, Mohammed Timinouni, Christina Bienhold, Julia Schnetzer, Marc E. Frischer, Wayne J. Fuller, Simon Claus, Ibon Cancio, Guy Cochrane, Patrick Martin, Gian Marco Luna, Snejana Moncheva, Linda A. Amaral-Zettler, Eva C. Sonnenschein, Paul Anders Fronth Nyhus, Shiao Y. Wang, Antonina Dos Santos, Eyal Rahav, Eileen Bresnan, Anna Kopf, Barker Katherine, Michèle Barbier, Naiara Rodríguez-Ezpeleta, Kemal Can Bizsel, Tim Ingleton, Patricia Wecker, Julia A. Busch, Kelly D. Goodwin, El Houcine Zaid, Rajaa Chahboune, Takashi Yoshida, Fatima El Otmani, Marianna Mea, Nina Dzhembekova, Anne-Lise Ducluzeau, Christopher P. Meyer, Georgios Kotoulas, Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, Jacobs University [Bremen], University of Oxford, Centre for Ecology & Hydrology, Oxfordshire UK, Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Israel Oceanographic and Limnological Research (IOLR), Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung (AWI), Hellenic Centre for Marine Research (HCMR), American University in Cairo, Danmarks Tekniske Universitet = Technical University of Denmark (DTU), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), University College Cork (UCC), Curtin University [Perth], Planning and Transport Research Centre (PATREC), Institut Ruder Boskovic, Institut Ruđer Bošković (IRB), University of Essex, Carl Von Ossietzky Universität Oldenburg = Carl von Ossietzky University of Oldenburg (OFFIS), Universidade de Lisboa = University of Lisbon (ULISBOA), Smithonian Environmental Research Center, Research Center, Odessa National I.I.Mechnikov University, Matis Ltd, Universidade dos Açores, Istituto di Science Marine (ISMAR ), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), Helmholtz Centre for Ocean Research [Kiel] (GEOMAR), Finnish Environment Institute (SYKE), National Oceanic and Atmospheric Administration (NOAA), University of Bergen (UiB), Dalhousie University [Halifax], Università di Urbino, Skidaway Institute of Oceanography, Smithsonian Institution, Interdisciplinary Centre of Marine and Environmental Research [Matosinhos, Portugal] (CIIMAR), Universidade do Porto = University of Porto, Environnements et Paléoenvironnements OCéaniques (EPOC), Observatoire aquitain des sciences de l'univers (OASU), Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Centro de Investigacion y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Mississippi State University [Mississippi], Bigelow Laboratory for Ocean Sciences, Smithsonian Marine Station, Smithsonian Tropical Research Institute, University of Southern California (USC), Laboratoire d'Océanographie Microbienne (LOMIC), Observatoire océanologique de Banyuls (OOB), Universidad de la República [Montevideo] (UDELAR), Bar-Ilan University [Israël], The Interuniversity Institute for marine Science in Eilat, IAMC-CNR, Istituto per l'Ambiente Marino Costiero &ndash, University of Otago [Dunedin, Nouvelle-Zélande], Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), Macquarie University, South Australian Research and Development Institute (SARDI), South Australian Research and Development Institute, Flanders Marine Institute, VLIZ, Centre for Environment, Fisheries and Aquaculture Science [Weymouth] (CEFAS), University of Algarve [Portugal], Marine Biological Association of the UK, Department of Chemistry, Alexandria University [Alexandrie], Argentine Institute of Oceanography, Laboratoire d'océanographie de Villefranche (LOV), Observatoire océanologique de Villefranche-sur-mer (OOVM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Kyoto University, University of Tasmania [Hobart, Australia] (UTAS), Waters, wetlands & coasts Sydney, Lwande technologies Cape Town, AZTI (AZTI), AZTI, Centre de recherches insulaires et observatoire de l'environnement (CRIOBE), Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE), University of the Basque Country/Euskal Herriko Unibertsitatea (UPV/EHU), Université Mohammed Premier [Oujda], Université Mohammed V de Rabat [Agdal] (UM5), Université Sidi Mohamed Ben Abdellah (USMBA), Université Abdelmalek Essaâdi (UAE), Institut Pasteur du Maroc, Réseau International des Instituts Pasteur (RIIP), Faculty of Sciences, Rabat, Morocco., Bulgarian Academy of Sciences (BAS), European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Université de Brest (UBO), Dokuz Eylül Üniversitesi = Dokuz Eylül University [Izmir] (DEÜ), Università degli Studi di Padova = University of Padua (Unipd), Singapore centre for environmental life sciences engineering, Nanyang Technological University [Singapour], Indigo V Expeditions, Newcastle University [Newcastle], Instituto Português de Investigação do Mar e da Atmosfera (IPMA), Information génomique et structurale (IGS), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Universität Bremen, Istituto Nazionale di Geofisica e di Oceanografia Sperimentale (OGS), Rajarata University of Sri-Lanka (RUSL), University of Southern Mississippi (USM), Mediterranean Science Commission, National institute of biology Fornace, Near East University, Marine Scotland Marine Laboratory, Kind of Blue Project ABS, University of Oslo (UiO), Marine biology research station, Bangor University, Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona] (ICM), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Fridtjof Nansen Institute of oceanology, Duke University [Durham], Miami University, Miami University [Ohio] (MU), Stazione Zoologica Anton Dohrn (SZN), Polytechnic University of Marche, University of Patras, British Antarctic Survey (BAS), Natural Environment Research Council (NERC), INSTIM, University of Alaska [Fairbanks] (UAF), University of Hawaii, University of Auckland [Auckland], Marine Biological Laboratory (MBL), University of Chicago, Brown University, Zhejiang University, Argonne National Laboratory [Lemont] (ANL), Department of Mathematics [Berkeley], University of California [Berkeley] (UC Berkeley), University of California (UC)-University of California (UC), Repositório da Universidade de Lisboa, Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, Rz, Sonnenschein, Ec, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Cacador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, Cm, Luna, Gm, Quero, Gm, Loscher, Cr, Kremp, A, Delorenzo, Me, Ovreas, L, Tolman, J, Laroche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, Cp, Ramos, S, Magalhaes, C, Jude-Lemeilleur, F, Aguirre-Macedo, Ml, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, Ja, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, Mm, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, Dmf, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, Dc, Kandil, Mm, Amaral, V, Biancalana, F, Santana, R, Pedrotti, Ml, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, E, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, Mea, M, Todorova, N, Karamfilov, V, ten Hoopen, P, Cochrane, G, L'Haridon, S, Bizsel, Kc, Vezzi, A, Lauro, Fm, Martin, P, Jensen, Rm, Hinks, J, Gebbels, S, Rosselli, R, De Pascale, F, Schiavon, R, dos Santos, A, Villar, E, Pesant, S, Cataletto, B, Malfatti, F, Edirisinghe, R, Silveira, Jah, Barbier, M, Turk, V, Tinta, T, Fuller, Wj, Salihoglu, I, Serakinci, N, Ergoren, Mc, Bresnan, E, Iriberri, J, Nyhus, Paf, Bente, E, Karlsen, He, Golyshin, Pn, Gasol, Jm, Moncheva, S, Dzhembekova, N, Johnson, Z, Sinigalliano, Cd, Gidley, Ml, Zingone, A, Danovaro, R, Tsiamis, G, Clark, M, Costa, Ac, El Bour, M, Martins, Am, Collins, Re, Ducluzeau, Al, Martinez, J, Costello, Mj, Amaral-Zettler, La, Gilbert, Ja, Davies, N, Field, D, Glockner, Fo, European Commission, University of Oxford [Oxford], Israel Oceanographic and Limnological Research - IOLR (ISRAEL), Danmarks Tekniske Universitet (DTU), Carl Von Ossietzky Universität Oldenburg, Universidade de Lisboa (ULISBOA), Consiglio Nazionale delle Ricerche (CNR), Universidade do Porto, UMR 5805 Environnements et Paléoenvironnements Océaniques et Continentaux (EPOC), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE), Universidad de la República [Montevideo] (UCUR), Kyoto University [Kyoto], Université de Perpignan Via Domitia (UPVD)-École pratique des hautes études (EPHE), University of Mohammed V, Sidi Mohammed Ben Abdellah University, Universita degli Studi di Padova, Rajarata University of Sri-Lanka, University of Patras [Patras], University of California [Berkeley], and University of California-University of California
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0106 biological sciences ,Biodiversity ,Marine life ,01 natural sciences ,Bacteria ,Genomics ,Health Index ,Marine ,Metagenomics ,Micro B3 ,Microorganism ,OSD ,Ocean sampling day ,Standards ,11. Sustainability ,Data and Information ,Ocean Sampling Day ,biodiversity ,genomics ,health index ,bacteria ,microorganism ,metagenomics ,marine ,standards ,[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere ,0303 health sciences ,Ecology ,Environmental resource management ,Geology ,Computer Science Applications ,Interdisciplinary Natural Sciences ,Microbial biodiversity ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,Ocean sampling day, OSD, Biodiversity, Genomics, Health Index, Bacteria, Microorganism, Metagenomics,Marine, Micro B3, Standards ,Oceans and Seas ,Microorganisms ,Marine Biology ,Health Informatics ,[SDV.BID]Life Sciences [q-bio]/Biodiversity ,Biology ,Ecology and Environment ,Metagenomic ,03 medical and health sciences ,Health index ,Medisinske Fag: 700 [VDP] ,SDG 14 - Life Below Water ,14. Life underwater ,030304 developmental biology ,business.industry ,010604 marine biology & hydrobiology ,Ocean sampling ,13. Climate action ,Commentary ,Genomic ,Database Management Systems ,Global Ocean ,business - Abstract
Kopf, Anna ... et. al.-- 5 pages, 1 figure.-- This manuscript is NOAA-GLERL contribution number 1763, Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits, This work was supported by the Micro B3 project, which is funded from the European Union’s Seventh Framework Programme (FP7; Joint Call OCEAN.2011‐2: Marine microbial diversity – new insights into marine ecosystems functioning and its biotechnological potential) under the grant agreement no 287589
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- 2015
28. PESI - a taxonomic backbone for Europe
- Author
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Güntsch, A., de Jong, Y., Kouwenberg, J., Boumans, L., Hussey, C., Hyam, R., Nicolson, N., Kirk, P., Paton, A., Michel, E., Guiry, M. D., Boegh, P. S., Pedersen, H., Enghoff, H., von Raab-Straube, E., Geoffroy, M., Müller, A., Kohlbecker, A., Berendsohn, W., Appeltans, W., Arvanitidis, C., Vanhoorne, B., Declerck, J., Vandepitte, L., Hernandez, F., Nash, R., Costello, M. J., Ouvrard, D., Bezard-Falgas, P., Bourgoin, T., Wetzel, F. T., Glöckler, F., Korb, G., Ring, C., Hagedorn, G., Häuser, C., Aktaç, N., Asan, A., Ardelean, A., Borges, P. A. V., Dhora, D., Khachatryan, H., Malicky, M., Ibrahimov, S., Tuzikov, A., De Wever, A., Moncheva, S., Spassov, N., Chobot, K., Popov, A., Boršic, I., Sfenthourakis, Spyros, Kõljalg, U., Uotila, P., Olivier, G., Dauvin, J. -C, Tarkhnishvili, D., Chaladze, G., Tuerkay, M., Legakis, A., Peregovits, L., Gudmundsson, G., ólafsson, E., Lysaght, L., Galil, B. S., Raimondo, F. M., Domina, G., Stoch, F., Minelli, A., Spungis, V., Budrys, E., Olenin, S., Turpel, A., Walisch, T., Krpach, V., Gambin, M. T., Ungureanu, L., Karaman, G., Kleukers, R. M. J. C., Stur, E., Aagaard, K., Valland, N., Moen, T. L., Bogdanowicz, W., Tykarski, P., Weslawski, J. M., Kedra, M., Martins, A. M. F., Abreu, A. D., Silva, R., Medvedev, S., Ryss, A., Šimic, S., Marhold, K., Stloukal, E., Tome, D., Ramos, M. A., Valdés, B., Pina, F., Kullander, S., Telenius, A., Gonseth, Y., Tschudin, P., Sergeyeva, O., Vladymyrov, V., Rizun, V. B., Raper, C., Lear, D., Stoev, P., Penev, L., Rubio, A. C., Backeljau, T., Saarenmaa, H., Ulenberg, S., University of Amsterdam [Amsterdam] (UvA), University of Oslo (UiO), The Natural History Museum [London] (NHM), Royal Botanical Garden Edinburgh, Royal Botanical Garden, Royal Botanic Gardens, Herbarium, National University of Ireland [Galway] (NUI Galway), Danish Meteorological Institute (DMI), International Oceanographic Data and Information Exchange (IODE) of the Intergovernmental Oceanographic Commission of UNESCO, Oostende, Hellenic Center for Marine Research (HCMR), Aquatic and Terrestrial Ecology, Operational Directorate Natural Environment, Royal Belgian Institute of Natural Sciences (RBINS), Institute of Oceanology of Bulgarian Academy of Sciences (IO-BAS), Bulgarian Academy of Sciences (BAS), National Museum of Natural History, University of Tartu, Morphodynamique Continentale et Côtière (M2C), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS), Icelandic Institute of Natural History, Israel Oceanographic and Limnological Research - IOLR (ISRAEL), Dipartimento di Scienze Ambientali, Università degli Studi dell'Aquila (UNIVAQ), Department of Biology, Universita degli Studi di Padova, Klaipėda University [Lituanie] (KU), Department of Natural History, NTNU University Museum [Trondheim], Norwegian University of Science and Technology [Trondheim] (NTNU), Norwegian University of Science and Technology (NTNU)-Norwegian University of Science and Technology (NTNU)-Norwegian University of Science and Technology [Trondheim] (NTNU), Norwegian University of Science and Technology (NTNU)-Norwegian University of Science and Technology (NTNU), Muzeum i Instytut Zoologii Polskiej Akademii Nauk, Institute of Oceanology, Polish Academy of Sciences (IO-PAN), Polska Akademia Nauk = Polish Academy of Sciences (PAN), Instituto Superior de Engenharia de Lisboa (ISEL), Centre for Earth Evolution and Dynamics [Oslo] (CEED), Department of Geosciences [Oslo], Faculty of Mathematics and Natural Sciences [Oslo], University of Oslo (UiO)-University of Oslo (UiO)-Faculty of Mathematics and Natural Sciences [Oslo], University of Oslo (UiO)-University of Oslo (UiO), Institute of Botany, Universität für Bodenkultur Wien [Vienne, Autriche] (BOKU), Tachinidae Recording Scheme, Sfenthourakis, Spyros [0000-0003-3213-2502], European Commission, Experimental Plant Systematics (IBED, FNWI), de Jong, Y, Kouwenberg, J, Boumans, L, Hussey, C, Hyam, R, Nicolson, N, Kirk, P, Paton, A, Michel, E, Guiry, MD, Boegh, PS, Pedersen, HA, Enghoff, H, von Raab-Straube, E, Guntsch, A, Geoffroy, M, Muller, A, Kohlbecker, A, Berendsohn, W, Appeltans, W, Arvanitidis, C, Vanhoorne, B, Declerck, J, Vandepitte, L, Hernandez, F, Nash, R, Costello, MJ, Ouvrard, D, Bezard-Falgas, P, Bourgoin, T, Wetzel, FT, Glockler, F, Korb, G, Ring, C, Hagedorn, G, Hauser, C, Aktac, N, Asan, A, Ardelean, A, Borges, PAV, Dhora, D, Khachatryan, H, Malicky, M, Ibrahimov, S, Tuzikov, A, De Wever, A, Moncheva, S, Spassov, N, Chobot, K, Popov, A, Borsic, I, Sfenthourakis, S, Koljalg, U, Uotila, P, Olivier, G, Dauvin, JC, Tarkhnishvili, D, Chaladze, G, Tuerkay, M, Legakis, A, Peregovits, L, Gudmundsson, G, Olafsson, E, Lysaght, L, Galil, BS, Raimondo, FM, Domina, G, Stoch, F, Minelli, A, Spungis, V, Budrys, E, Olenin, S, Turpel, A, Walisch, T, Krpach, V, Gambin, MT, Ungureanu, L, Karaman, G, Kleukers, RMJC, Stur, E, Aagaard, K, Valland, N, Moen, TL, Bogdanowicz, W, Tykarski, P, Weslawski, JM, Kedra, M, M de Frias Martins, A, Abreu, AD, Silva, R, Medvedev, S, Ryss, A, Simic, S, Marhold, K, Stloukal, E, Tome, D, Ramos, MA, Valdes, B, Pina, F, Kullander, S, Telenius, A, Gonseth, Y, Tschudin, P, Sergeyeva, O, Vladymyrov, V, Rizun, VB, Raper, C, Lear, D, Stoev, P, Penev, L, Rubio, AC, Backeljau, T, Saarenmaa, H, and Ulenberg, S
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Fauna Europaea ,EU-nomen ,ZooBank ,computer.software_genre ,Index Fungorum ,ComputingMethodologies_ARTIFICIALINTELLIGENCE ,Floristics & Distribution ,PESI, Euro+Med PlantBase, Fauna Europaea, European Register of Marine Species, Index Fungorum, International Plant Names Index (IPNI), AlgaeBase, ZooBank, European taxonomic backbone, EU-nomen, Taxonomic indexing, Authority File, Taxonomy, Nomenclature, Global Names Architecture, INSPIRE, LifeWatch, EUBON ,Arctic Ocean ,European register of marine species ,European taxonomic backbone ,Plantae ,Faunistics & Distribution ,Atlantic Ocean ,Global Names Architecture ,Biodiversity assessment ,PESI ,Euro+Med PlantBase ,European Register of Marine Species ,International Plant Names Index (IPNI) ,AlgaeBase ,Taxonomic indexing ,Authority File ,Taxonomy ,Nomenclature ,INSPIRE ,LifeWatch ,EUBON ,Ecology ,Settore BIO/02 - Botanica Sistematica ,Global names architecture ,Europe ,Nature Conservation ,General Research Article ,Taxonomy (biology) ,Data mining ,Neogene ,European register of marine specie ,InformationSystems_INFORMATIONSTORAGEANDRETRIEVAL ,Index fungorum ,Biodiversity informatics ,Biology ,Animalia ,Ecology, Evolution, Behavior and Systematics ,Fungi ,15. Life on land ,Data science ,Settore BIO/03 - Botanica Ambientale E Applicata ,Sustainability ,Authority file ,Catalogues and Checklists ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,computer - Abstract
Reliable taxonomy underpins communication in all of biology, not least nature conservation and sustainable use of ecosystem resources. The flexibility of taxonomic interpretations, however, presents a serious challenge for end-users of taxonomic concepts. Users need standardised and continuously harmonised taxonomic reference systems, as well as highquality and complete taxonomic data sets, but these are generally lacking for nonspecialists. The solution is in dynamic, expertly curated web-based taxonomic tools. The Pan-European Species-directories Infrastructure (PESI) worked to solve this key issue by providing a taxonomic e-infrastructure for Europe. It strengthened the relevant social (expertise) and information (standards, data and technical) capacities of five major community networks on taxonomic indexing in Europe, which is essential for proper biodiversity assessment and monitoring activities. The key objectives of PESI were: 1) standardisation in taxonomic reference systems, 2) enhancement of the quality and completeness of taxonomic data sets and 3) creation of integrated access to taxonomic information. New information This paper describes the results of PESI and its future prospects, including the involvement in major European biodiversity informatics initiatives and programs., PESI was funded by the European Commission under the Seventh Framework Program (project reference: RI-223806), contributing to the FP7-INFRASTRUCTURES 'Capacities' sub-program under the Coordination and Support Actions (CSA) funding scheme (call: FP7-INFRASTRUCTURES-2007-2).
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- 2015
29. Psychometric Evaluation of an Adapted Short-Form Spirituality Scale in a Sample of Predominantly White Adults in an Inpatient Substance Use Disorder Treatment Program.
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Britton EM, Taisir R, Cooper A, Remers S, Chorny Y, LaBelle O, Rush B, MacKillop J, and Costello MJ
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- Humans, Male, Female, Adult, Middle Aged, Reproducibility of Results, White People psychology, Factor Analysis, Statistical, Surveys and Questionnaires, Substance Abuse Treatment Centers, Spirituality, Psychometrics, Substance-Related Disorders therapy, Substance-Related Disorders psychology, Inpatients psychology
- Abstract
Spirituality is an important aspect of treatment and recovery for substance use disorders (SUDs), but ambiguities in measurement can make it difficult to incorporate as part of routine care. We evaluated the psychometric properties of an adapted short-form version of the Spirituality Scale (the Spirituality Scale-Short-Form; SS-SF) for use in SUD treatment settings. Participants were adult patients ( N = 1,388; M
age = 41.23 years, SDage = 11.55; 68% male; 86% White) who entered a large, clinically mixed inpatient SUD treatment program. Factor analysis supported the two-dimensional structure, with factors representing Self-Discovery and Transcendent Connection. Tests of measurement invariance demonstrated that the scale was invariant across age and gender subgroups. The SS-SF exhibited convergent and concurrent validity via associations with participation in spiritual activities, hopefulness, life satisfaction, 12-step participation, and depressive symptoms. Finally, scores on the SS-SF were significantly higher at discharge compared to admission, demonstrating short-term sensitivity to change. These findings support use of the SS-SF as a concise, psychometrically sound measure of spirituality in the context of substance use treatment., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared the following potential conflicts of interest with respect to the research, authorship, and/or publication of this article: Homewood Health provides unrestricted charitable donations to Homewood Research Institute. J.M. is a principal in BEAM Diagnostics, Inc. No other potential conflicts of interest to report.- Published
- 2024
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30. Fully protected Marine Protected Areas do not displace fisheries.
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Costello MJ
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- Animals, Fishes, Ecosystem, Fisheries, Conservation of Natural Resources
- Abstract
Competing Interests: Competing interests statement:The author declares no competing interest.
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- 2024
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31. Future trends of marine fish biomass distributions from the North Sea to the Barents Sea.
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Gordó-Vilaseca C, Costello MJ, Coll M, Jüterbock A, Reiss H, and Stephenson F
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- Animals, Arctic Regions, Atlantic Ocean, North Sea, Biodiversity, Ecosystem, Oceans and Seas, Global Warming, Population Dynamics, Biomass, Fishes, Climate Change
- Abstract
Climate warming is one of the facets of anthropogenic global change predicted to increase in the future, its magnitude depending on present-day decisions. The north Atlantic and Arctic Oceans are already undergoing community changes, with warmer-water species expanding northwards, and colder-water species retracting. However, the future extent and implications of these shifts remain unclear. Here, we fitted a joint species distribution model to occurrence data of 107, and biomass data of 61 marine fish species from 16,345 fishery independent trawls sampled between 2004 and 2022 in the northeast Atlantic Ocean, including the Barents Sea. We project overall increases in richness and declines in relative dominance in the community, and generalised increases in species' ranges and biomass across three different future scenarios in 2050 and 2100. The projected decline of capelin and the practical extirpation of polar cod from the system, the two most abundant species in the Barents Sea, drove an overall reduction in fish biomass at Arctic latitudes that is not replaced by expanding species. Furthermore, our projections suggest that Arctic demersal fish will be at high risk of extinction by the end of the century if no climate refugia is available at eastern latitudes., (© 2024. The Author(s).)
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- 2024
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32. Author Correction: A global biodiversity observing system to unite monitoring and guide action.
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Gonzalez A, Vihervaara P, Balvanera P, Bates AE, Bayraktarov E, Bellingham PJ, Bruder A, Campbell J, Catchen MD, Cavender-Bares J, Chase J, Coops N, Costello MJ, Czúcz B, Delavaud A, Dornelas M, Dubois G, Duffy EJ, Eggermont H, Fernandez M, Fernandez N, Ferrier S, Geller GN, Gill M, Gravel D, Guerra CA, Guralnick R, Harfoot M, Hirsch T, Hoban S, Hughes AC, Hugo W, Hunter ME, Isbell F, Jetz W, Juergens N, Kissling WD, Krug CB, Kullberg P, Le Bras Y, Leung B, Londoño-Murcia MC, Lord JM, Loreau M, Luers A, Ma K, MacDonald AJ, Maes J, McGeoch M, Mihoub JB, Millette KL, Molnar Z, Montes E, Mori AS, Muller-Karger FE, Muraoka H, Nakaoka M, Navarro L, Newbold T, Niamir A, Obura D, O'Connor M, Paganini M, Pelletier D, Pereira H, Poisot T, Pollock LJ, Purvis A, Radulovici A, Rocchini D, Roeoesli C, Schaepman M, Schaepman-Strub G, Schmeller DS, Schmiedel U, Schneider FD, Shakya MM, Skidmore A, Skowno AL, Takeuchi Y, Tuanmu MN, Turak E, Turner W, Urban MC, Urbina-Cardona N, Valbuena R, Van de Putte A, van Havre B, Wingate VR, Wright E, and Torrelio CZ
- Published
- 2023
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33. A global biodiversity observing system to unite monitoring and guide action.
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Gonzalez A, Vihervaara P, Balvanera P, Bates AE, Bayraktarov E, Bellingham PJ, Bruder A, Campbell J, Catchen MD, Cavender-Bares J, Chase J, Coops N, Costello MJ, Czúcz B, Delavaud A, Dornelas M, Dubois G, Duffy EJ, Eggermont H, Fernandez M, Fernandez N, Ferrier S, Geller GN, Gill M, Gravel D, Guerra CA, Guralnick R, Harfoot M, Hirsch T, Hoban S, Hughes AC, Hugo W, Hunter ME, Isbell F, Jetz W, Juergens N, Kissling WD, Krug CB, Kullberg P, Le Bras Y, Leung B, Londoño-Murcia MC, Lord JM, Loreau M, Luers A, Ma K, MacDonald AJ, Maes J, McGeoch M, Mihoub JB, Millette KL, Molnar Z, Montes E, Mori AS, Muller-Karger FE, Muraoka H, Nakaoka M, Navarro L, Newbold T, Niamir A, Obura D, O'Connor M, Paganini M, Pelletier D, Pereira H, Poisot T, Pollock LJ, Purvis A, Radulovici A, Rocchini D, Roeoesli C, Schaepman M, Schaepman-Strub G, Schmeller DS, Schmiedel U, Schneider FD, Shakya MM, Skidmore A, Skowno AL, Takeuchi Y, Tuanmu MN, Turak E, Turner W, Urban MC, Urbina-Cardona N, Valbuena R, Van de Putte A, van Havre B, Wingate VR, Wright E, and Torrelio CZ
- Subjects
- Biodiversity, Ecosystem
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- 2023
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34. Widespread support for a global species list with a formal governance system.
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Lien AM, Banki O, Barik SK, Buckeridge JS, Christidis L, Cigliano MM, Conix S, Costello MJ, Hobern D, Kirk PM, Kroh A, Montgomery N, Nikolaeva S, Orrell TM, Pyle RL, Raz L, Thiele K, Thomson SA, van Dijk PP, Wambiji N, Whalen A, Zachos FE, Zhang ZQ, and Garnett ST
- Subjects
- Humans, Internationality, Commerce, Physicians
- Abstract
Taxonomic data are a scientific common. Unlike nomenclature, which has strong governance institutions, there are currently no generally accepted governance institutions for the compilation of taxonomic data into an accepted global list. This gap results in challenges for conservation, ecological research, policymaking, international trade, and other areas of scientific and societal importance. Consensus on a global list and its management requires effective governance and standards, including agreed mechanisms for choosing among competing taxonomies and partial lists. However, governance frameworks are currently lacking, and a call for governance in 2017 generated critical responses. Any governance system to which compliance is voluntary requires a high level of legitimacy and credibility among those by and for whom it is created. Legitimacy and credibility, in turn, require adequate and credible consultation. Here, we report on the results of a global survey of taxonomists, scientists from other disciplines, and users of taxonomy designed to assess views and test ideas for a new system of taxonomic list governance. We found a surprisingly high degree of agreement on the need for a global list of accepted species and their names, and consistent views on what such a list should provide to users and how it should be governed. The survey suggests that consensus on a mechanism to create, manage, and govern a single widely accepted list of all the world's species is achievable. This finding was unexpected given past controversies about the merits of list governance.
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- 2023
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35. Numbers of fish species, higher taxa, and phylogenetic similarity decrease with latitude and depth, and deep-sea assemblages are unique.
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Lin HY, Wright S, and Costello MJ
- Subjects
- Animals, Phylogeny, Water, Fishes, Biodiversity
- Abstract
Species richness has been found to increase from the poles to the tropics but with a small dip near the equator over all marine fishes. Phylogenetic diversity measures offer an alternative perspective on biodiversity linked to evolutionary history. If phylogenetic diversity is standardized for species richness, then it may indicate places with relatively high genetic diversity. Latitudes and depths with both high species and phylogenetic diversity would be a priority for conservation. We compared latitudinal and depth gradients of species richness, and three measures of phylogenetic diversity, namely average phylogenetic diversity (AvPD), the sum of the higher taxonomic levels (STL) and the sum of the higher taxonomic levels divided by the number of species (STL/spp) for modelled ranges of 5,619 marine fish species. We distinguished all, bony and cartilaginous fish groups and four depth zones namely: whole water column; 0 -200 m; 201-1,000 m; and 1,001-6,000 m; at 5° latitudinal intervals from 75°S to 75°N, and at 100 m depth intervals from 0 m to 3,500 m. Species richness and higher taxonomic richness (STL) were higher in the tropics and subtropics with a small dip at the equator, and were significantly correlated among fish groups and depth zones. Species assemblages had closer phylogenetic relationships (lower AvPD and STL/spp) in warmer (low latitudes and shallow water) than colder environments (high latitudes and deep sea). This supports the hypothesis that warmer shallow latitudes and depths have had higher rates of evolution across a range of higher taxa. We also found distinct assemblages of species in different depth zones such that deeper sea species are not simply a subset of shallow assemblages. Thus, conservation needs to be representative of all latitudes and depth zones to encompass global biodiversity., Competing Interests: Mark John Costello is an Academic Editor for PeerJ., (©2023 Lin et al.)
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- 2023
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36. Fishery catch is affected by geographic expansion, fishing down food webs and climate change in Aotearoa, New Zealand.
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Lavin CP, Pauly D, Dimarchopoulou D, Liang C, and Costello MJ
- Subjects
- Animals, Fisheries, Hunting, New Zealand, Food Chain, Climate Change
- Abstract
Historical fishing effort has resulted, in many parts of the ocean, in increasing catches of smaller, lower trophic level species once larger higher trophic level species have been depleted. Concurrently, changes in the geographic distribution of marine species have been observed as species track their thermal affinity in line with ocean warming. However, geographic shifts in fisheries, including to deeper waters, may conceal the phenomenon of fishing down the food web and effects of climate warming on fish stocks. Fisheries-catch weighted metrics such as the Mean Trophic Level (MTL) and Mean Temperature of the Catch (MTC) are used to investigate these phenomena, although apparent trends of these metrics can be masked by the aforementioned geographic expansion and deepening of fisheries catch across large areas and time periods. We investigated instances of both fishing down trophic levels and climate-driven changes in the geographic distribution of fished species in New Zealand waters from 1950-2019, using the MTL and MTC. Thereafter, we corrected for the masking effect of the geographic expansion of fisheries within these indices by using the Fishing-in-Balance (FiB) index and the adapted Mean Trophic Level (aMTL) index. Our results document the offshore expansion of fisheries across the New Zealand Exclusive Economic Zone (EEZ) from 1950-2019, as well as the pervasiveness of fishing down within nearshore fishing stock assemblages. We also revealed the warming of the MTC for pelagic-associated fisheries, trends that were otherwise masked by the depth- and geographic expansion of New Zealand fisheries across the study period., Competing Interests: Mark John Costello is an Academic Editor for PeerJ., (© 2023 Lavin et al.)
- Published
- 2023
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37. Body size and trophic level increase with latitude, and decrease in the deep-sea and Antarctica, for marine fish species.
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Lin HY and Costello MJ
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- Animals, Antarctic Regions, Body Size, Oxygen, Biological Evolution, Fishes
- Abstract
The functional traits of species depend both on species' evolutionary characteristics and their local environmental conditions and opportunities. The temperature-size rule (TSR), gill-oxygen limitation theory (GOLT), and temperature constraint hypothesis (TCH) have been proposed to explain the gradients of body size and trophic level of marine species. However, how functional traits vary both with latitude and depth have not been quantified at a global scale for any marine taxon. We compared the latitudinal gradients of trophic level and maximum body size of 5,619 marine fish from modelled species ranges, based on (1) three body size ranges, <30, 30-100, and >100 cm, and (2) four trophic levels, <2.20, 2.20-2.80, 2.81-3.70, >3.70. These were parsed into 5° latitudinal intervals in four depth zones: whole water column, 0-200, 201-1,000, and 1,001-6,000 m. We described the relationship between latitudinal gradients of functional traits and salinity, sea surface and near seabed temperatures, and dissolved oxygen. We found mean body sizes and mean trophic levels of marine fish were smaller and lower in the warmer latitudes, and larger and higher respectively in the high latitudes except for the Southern Ocean (Antarctica). Fish species with trophic levels ≤2.80 were dominant in warmer and absent in colder environments. We attribute these differences in body size and trophic level between polar regions to the greater environmental heterogeneity of the Arctic compared to Antarctica. We suggest that fish species' mean maximum body size declined with depth because of decreased dissolved oxygen. These results support the TSR, GOLT and TCH hypotheses respectively. Thus, at the global scale, temperature and oxygen are primary factors affecting marine fishes' biogeography and biological traits., Competing Interests: Mark J. Costello is an Academic Editor for PeerJ., (© 2023 Lin and Costello.)
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- 2023
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38. Progress in the discovery of isopods (Crustacea: Peracarida)-is the description rate slowing down?
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Hartebrodt L, Wilson S, and Costello MJ
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- Animals, Biodiversity, Isopoda
- Abstract
Taxonomic species are the best standardised metric of biodiversity. Therefore, there is broad scientific and public interest in how many species have already been named and how many more may exist. Crustaceans comprise about 6% of all named animal species and isopods about 15% of all crustaceans. Here, we review progress in the naming of isopods in relation to the number of people describing new species and estimate how many more species may yet be named by 2050 and 2100, respectively. In over two and a half centuries of discovery, 10,687 isopod species in 1,557 genera and 141 families have been described by 755 first authors. The number of authors has increased over time, especially since the 1950s, indicating increasing effort in the description of new species. Despite that the average number of species described per first author has declined since the 1910s, and the description rate has slowed down over the recent decades. Authors' publication lifetimes did not change considerably over time, and there was a distinct shift towards multi-authored publications in recent decades. Estimates from a non-homogeneous renewal process model predict that an additional 660 isopod species will be described by 2100, assuming that the rate of description continues at its current pace., Competing Interests: Mark J. Costello is an Academic Editor for PeerJ., (©2023 Hartebrodt et al.)
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- 2023
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39. Over 20% of marine fishes shifting in the North and Barents Seas, but not in the Norwegian Sea.
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Gordó-Vilaseca C, Pecuchet L, Coll M, Reiss H, Jüterbock A, and Costello MJ
- Subjects
- Animals, Biomass, North Sea, Phenotype, Climate, Fishes
- Abstract
Climate warming generally induces poleward range expansions and equatorward range contractions of species' environmental niches on a global scale. Here, we examined the direction and magnitude of species biomass centroid geographic shifts in relation to temperature and depth for 83 fish species in 9,522 standardised research trawls from the North Sea (1998-2020) to the Norwegian (2000-2020) and Barents Sea (2004-2020). We detected an overall significant northward shift of the marine fish community biomass in the North Sea, and individual species northward shifts in the Barents and North Seas, in 20% and 25% of the species' biomass centroids in each respective region. We did not detect overall community shifts in the Norwegian Sea, where two species (8%) shifted in each direction (northwards and southwards). Among 9 biological traits, species biogeographic assignation, preferred temperature, age at maturity and maximum depth were significant explanatory variables for species latitudinal shifts in some of the study areas, and Arctic species shifted significantly faster than boreal species in the Barents Sea. Overall, our results suggest a strong influence of other factors, such as biological interactions, in determining several species' recent geographic shifts., Competing Interests: Mark John Costello is an Academic Editor at PeerJ., (© 2023 Gordó-Vilaseca et al.)
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- 2023
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40. Climate change adaptation through an integrative lens in Aotearoa New Zealand.
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Lawrence J, Wreford A, Blackett P, Hall D, Woodward A, Awatere S, Livingston ME, Macinnis-Ng C, Walker S, Fountain J, Costello MJ, Ausseil AE, Watt MS, Dean SM, Cradock-Henry NA, Zammit C, and Milfont TL
- Abstract
Climate change is being felt across all human and natural systems in Aotearoa New Zealand and is projected to worsen this decade as impacts compound and cascade through natural system and sectoral dependencies. The effectiveness of adaptation is constrained by how fast greenhouse gas emissions are reduced globally, the pace of change, the frequency and progression of impacts, and the capacity of our natural, societal and political systems to respond. We explore how these systems and sectors interact with existing and projected climate change stressors by categorising climate change impacts (Trends and Events) and consequential thresholds (Thresholds), and by grouping systems and sectors by types (Typologies). This approach has identified commonalities and differences between the typologies which are illustrated with examples. Critical constraints and opportunities for adaptation have been identified to guide sector adaptation decision-making and for ongoing adaptation progress and effectiveness monitoring. Constraints are found across all sectors, and opportunities exist to address them through modelling and projections, monitoring frameworks, decision tools and measures, governance coordination and integration of the Māori worldview of the relationship between humans and nature. However, limits to adaptation exist and will increase over time unless all sectors and all nations urgently reduce their emissions., Competing Interests: No potential conflict of interest was reported by the author(s)., (© 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.)
- Published
- 2023
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41. Hurdles and opportunities in implementing marine biosecurity systems in data-poor regions.
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Carvalho S, Shchepanik H, Aylagas E, Berumen ML, Costa FO, Costello MJ, Duarte S, Ferrario J, Floerl O, Heinle M, Katsanevakis S, Marchini A, Olenin S, Pearman JK, Peixoto RS, Rabaoui LJ, Ruiz G, Srėbalienė G, Therriault TW, Vieira PE, and Zaiko A
- Abstract
Managing marine nonindigenous species (mNIS) is challenging, because marine environments are highly connected, allowing the dispersal of species across large spatial scales, including geopolitical borders. Cross-border inconsistencies in biosecurity management can promote the spread of mNIS across geopolitical borders, and incursions often go unnoticed or unreported. Collaborative surveillance programs can enhance the early detection of mNIS, when response may still be possible, and can foster capacity building around a common threat. Regional or international databases curated for mNIS can inform local monitoring programs and can foster real-time information exchange on mNIS of concern. When combined, local species reference libraries, publicly available mNIS databases, and predictive modeling can facilitate the development of biosecurity programs in regions lacking baseline data. Biosecurity programs should be practical, feasible, cost-effective, mainly focused on prevention and early detection, and be built on the collaboration and coordination of government, nongovernment organizations, stakeholders, and local citizens for a rapid response., (© The Author(s) 2023. Published by Oxford University Press on behalf of the American Institute of Biological Sciences.)
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- 2023
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42. The Clinical Relevance of Impulsivity in Substance Use Disorder Treatment: Examining Within-Treatment Changes and Relationship to Psychiatric Symptoms and Cravings in a Large Inpatient Sample.
- Author
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Levitt EE, Sousa S, Costello MJ, LaBelle OP, Rush B, and MacKillop J
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- Humans, Male, Female, Inpatients, Clinical Relevance, Impulsive Behavior, Craving, Substance-Related Disorders therapy, Substance-Related Disorders psychology
- Abstract
Objective: Impulsivity is a multidimensional construct consistently associated with problematic substance use, but less is known about its relevance to clinical outcomes. The current study examined whether impulsivity changed over the course of addiction treatment and whether the changes were associated with changes in other clinical outcomes., Method: Participants were patients in a large inpatient addiction medicine program ( N = 817; 71.40% male). Impulsivity was assessed using a self-report measure of delay discounting (i.e., overvaluation of smaller immediate rewards) and the UPPS-P Impulsive Behavior Scale, a self-report measure of impulsive personality traits. Outcomes were psychiatric symptoms including depression, anxiety, posttraumatic stress disorder, and drug cravings., Results: Within-subjects analyses of variance revealed significant within-treatment changes in all UPPS-P subscales, all psychiatric indicators, and craving ( ps < .005), but not delay discounting. Changes in all UPPS-P traits, except for sensation seeking, were significantly positively associated with changes in psychiatric symptoms and cravings over the course of treatment ( ps < .01)., Conclusions: These findings reveal that facets of impulsive personality change across addiction treatment and are generally related to positive changes in other clinically relevant outcomes. Evidence of change despite no explicit intervention targeting suggests that impulsive personality traits may be viable treatment targets in substance use disorder treatment.
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- 2023
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43. Exceptional endemicity of Aotearoa New Zealand biota shows how taxa dispersal traits, but not phylogeny, correlate with global species richness.
- Author
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Costello MJ
- Abstract
Species' with more limited dispersal and consequently less gene flow are more likely to form new spatially segregated species and thus contribute disproportionally to endemic biota and global species richness. Aotearoa New Zealand has exceptional endemicity, with 52% of its 54,000 named species endemic, including 32%, 39% and 68% for freshwater, marine and terrestrial environments respectively. The lower endemicity of freshwater biota (excluding insects) is attributed to their need to disperse between habitats that are temporary on evolutionary timescales. The percent endemicity of higher taxa (Order to Kingdom), a measure of phylogenetic relationships, was not correlated with regional and global species richness. However, there was a positive correlation between endemicity and species richness across dispersal trait groups based on their environment, typical body size, mobility (including flight), and if marine, whether pelagic or benthic. Typically flighted taxa had high endemicity contrary to the dispersal-endemicity hypothesis, but reflecting exceptional isolation by distance and time, and reduced flight ability as occurs on islands. It is proposed that the high richness and endemicity of mobile macrofauna is caused by a combination of niche specialisation opportunities and predation limiting dispersal respectively. Thus, dispersal traits better predicted endemicity and global species richness than phylogeny., Competing Interests: No potential conflict of interest was reported by the author., (© 2023 Nord University. Published by Informa UK Limited, trading as Taylor & Francis Group.)
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- 2023
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44. Oceanographic connectivity explains the intra-specific diversity of mangrove forests at global scales.
- Author
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Gouvêa LP, Fragkopoulou E, Cavanaugh K, Serrão EA, Araújo MB, Costello MJ, Westergerling EHT, and Assis J
- Subjects
- Humans, Biodiversity, Population Density, Genetic Drift, Genetic Variation, Wetlands, Forests
- Abstract
The distribution of mangrove intra-specific biodiversity can be structured by historical demographic processes that enhance or limit effective population sizes. Oceanographic connectivity (OC) may further structure intra-specific biodiversity by preserving or diluting the genetic signatures of historical changes. Despite its relevance for biogeography and evolution, the role of oceanographic connectivity in structuring the distribution of mangrove's genetic diversity has not been addressed at global scale. Here we ask whether connectivity mediated by ocean currents explains the intra-specific diversity of mangroves. A comprehensive dataset of population genetic differentiation was compiled from the literature. Multigenerational connectivity and population centrality indices were estimated with biophysical modeling coupled with network analyses. The variability explained in genetic differentiation was tested with competitive regression models built upon classical isolation-by-distance (IBD) models considering geographic distance. We show that oceanographic connectivity can explain the genetic differentiation of mangrove populations regardless of the species, region, and genetic marker (significant regression models in 95% of cases, with an average R-square of 0.44 ± 0.23 and Person's correlation of 0.65 ± 0.17), systematically improving IBD models. Centrality indices, providing information on important stepping-stone sites between biogeographic regions, were also important in explaining differentiation (R-square improvement of 0.06 ± 0.07, up to 0.42). We further show that ocean currents produce skewed dispersal kernels for mangroves, highlighting the role of rare long-distance dispersal events responsible for historical settlements. Overall, we demonstrate the role of oceanographic connectivity in structuring mangrove intra-specific diversity. Our findings are critical for mangroves' biogeography and evolution, but also for management strategies considering climate change and genetic biodiversity conservation.
- Published
- 2023
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45. Climate change projections show shrinking deep-water ecosystems with implications for biodiversity and aquaculture in the Northwest Pacific.
- Author
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Zhao Q, Huang H, Costello MJ, and Chu J
- Subjects
- Animals, Climate Change, Biodiversity, Oceans and Seas, Aquaculture, Salmon, Ecosystem, Water
- Abstract
The increased availability of environmental data with depth deriving from remote-sensing-based datasets permits more comprehensive modelling of the distribution of marine ecosystems in space and time. This research tests the potential of such objective modelling of marine ecosystems in four dimensions, spatial and temporal, to provide projections of how climate change may affect biodiversity, including aquaculture. This approach could be replicated for any regional seas. The Bohai Sea, Yellow Sea, and East China Sea (BYECS) are marginal seas in the Northwest Pacific bounded by China, Korea, and Japan. Despite providing important ecological and economic services, their ecological conditions and ecosystems distribution have not yet been systematically mapped. This analysis used 13 marine environmental variables, measured on a three-dimensional and monthly basis during 1993-2019, to classify and map the BYECS region by k-means clustering using cosine similarity as distance function. There were 13 distinct areas identified that fit the definition of "ecosystems" that is, enduring regions demarcated by environmental characteristics. Of these 13 ecosystems, the Yellow Sea Cold Water (YSCW) Ecosystem is significant in relation to seasonal species composition and the newly developing deep-sea salmon caging aquaculture in the region. Projections of the potential size of this water mass under various climate-change scenarios based on analysis using the Non-Parametric Probabilistic Ecological Niche (NPPEN) model show that its volume may decrease 31 %-66 % in the future. Such a decrease would have impacts on the seasonal species' abundances in the BYECS marginal sea region and threaten the deep-sea cold-water salmon farming., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2023
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46. Autophagy Requirements for Eye Lens Differentiation and Transparency.
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Brennan L, Costello MJ, Hejtmancik JF, Menko AS, Riazuddin SA, Shiels A, and Kantorow M
- Subjects
- Mice, Humans, Animals, Autophagy, Cell Nucleus metabolism, Cell Differentiation, Lens, Crystalline metabolism, Cataract metabolism
- Abstract
Recent evidence points to autophagy as an essential cellular requirement for achieving the mature structure, homeostasis, and transparency of the lens. Collective evidence from multiple laboratories using chick, mouse, primate, and human model systems provides evidence that classic autophagy structures, ranging from double-membrane autophagosomes to single-membrane autolysosomes, are found throughout the lens in both undifferentiated lens epithelial cells and maturing lens fiber cells. Recently, key autophagy signaling pathways have been identified to initiate critical steps in the lens differentiation program, including the elimination of organelles to form the core lens organelle-free zone. Other recent studies using ex vivo lens culture demonstrate that the low oxygen environment of the lens drives HIF1a-induced autophagy via upregulation of essential mitophagy components to direct the specific elimination of the mitochondria, endoplasmic reticulum, and Golgi apparatus during lens fiber cell differentiation. Pioneering studies on the structural requirements for the elimination of nuclei during lens differentiation reveal the presence of an entirely novel structure associated with degrading lens nuclei termed the nuclear excisosome. Considerable evidence also indicates that autophagy is a requirement for lens homeostasis, differentiation, and transparency, since the mutation of key autophagy proteins results in human cataract formation.
- Published
- 2023
- Full Text
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47. Three decades of increasing fish biodiversity across the northeast Atlantic and the Arctic Ocean.
- Author
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Gordó-Vilaseca C, Stephenson F, Coll M, Lavin C, and Costello MJ
- Subjects
- Animals, Arctic Regions, Oceans and Seas, Temperature, Climate Change, Ecosystem, Atlantic Ocean, Biodiversity, Fishes
- Abstract
Observed range shifts of numerous species support predictions of climate change models that species will shift their distribution northward into the Arctic and sub-Arctic seas due to ocean warming. However, how this is affecting overall species richness is unclear. Here we analyze 20,670 scientific research trawls from the North Sea to the Arctic Ocean collected from 1994 to 2020, including 193 fish species. We found that demersal fish species richness at the local scale has doubled in some Arctic regions, including the Barents Sea, and increased at a lower rate at adjacent regions in the last three decades, followed by an increase in species richness and turnover at a regional scale. These changes in biodiversity correlated with an increase in sea bottom temperature. Within the study area, Arctic species' probability of occurrence generally declined over time. However, the increase in species from southern latitudes, together with an increase in some Arctic species, ultimately led to an enrichment of the Arctic and sub-Arctic marine fauna due to increasing water temperature consistent with climate change.
- Published
- 2023
- Full Text
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48. Six steps for building a technological knowledge base for future taxonomic work.
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Orr MC, Feijó A, Chesters D, Vogler AP, Bossert S, Ferrari RR, Costello MJ, Hughes AC, Krogmann L, Ascher JS, Zhou X, Li DZ, Bai M, Chen J, Ge D, Luo A, Qiao G, Williams PH, Zhang AB, Ma K, Zhang F, and Zhu CD
- Published
- 2022
- Full Text
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49. Characterizing Clinical Heterogeneity in a Large Inpatient Addiction Treatment Sample: Confirmatory Latent Profile Analysis and Differential Levels of Craving and Impulsivity.
- Author
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Minhas M, Cooper A, Sousa S, Costello MJ, and MacKillop J
- Abstract
Background: Individuals with substance use disorders (SUDs) have highly heterogeneous presentations and identifying more homogeneous subgroups may foster more personalized treatment. This study used SUD and other psychiatric indicators to characterize latent subgroups of patients in a large inpatient addiction treatment program. The resulting subgroups were then analyzed with respect to differences on clinically informative motivational mechanisms., Methods: Patients (n = 803) were assessed for severity of SUD (ie, alcohol use disorder, drug use disorder), post-traumatic stress disorder, anxiety disorders, and major depressive disorder. Confirmatory latent profile analysis (CLPA) was used to identify latent subgroups, hypothesizing 4 subgroups. Subgroups were then characterized with respect to multiple indicators of impulsivity (ie, delay discounting and impulsive personality traits via the UPPS-P) and craving., Results: The CLPA confirmed the hypothesized 4-profile solution according to all indicators (eg, entropy = 0.90, all posterior probabilities ⩾.92). Profile 1 (n = 229 [32.2%], 24.9% female, median age in range of 45-49) reflected individuals with high alcohol severity and low psychiatric severity (HAlc/LPsy). Profile 2 (n = 193 [27.1%], 29.3% female, median age in range of 35-39) reflected individuals with high drug and psychiatric severity (HDrug/HPsy). Profile 3 (n = 160 [22.5%], 37.6% female, median age in range of 45-49) reflected individuals with high alcohol severity and psychiatric severity (HAlc/HPsy). Profile 4 (n = 130 [18.3%], 19.4% female, median age in range of 35-39) reflected individuals with high drug severity and low psychiatric severity (HDrug/LPsy). Both high comorbid psychiatric severity subgroups exhibited significantly higher craving and facets of impulsivity., Conclusions: The results provide further evidence of 4 latent subgroups among inpatients receiving addiction treatment, varying by alcohol versus other drugs and low versus high psychiatric comorbidity. Furthermore, they reveal the highest craving and impulsivity in the high psychiatric comorbidity groups, suggesting targets for more intensive clinical intervention in these patients., Competing Interests: The author(s) declared the following potential conflicts of interest with respect to the research, authorship, and/or publication of this article: JM is a principal in Beam Diagnostics, Inc. and a consultant to Clairvoyant Therapeutics, Inc., although no related products or services were involved in this research., (© The Author(s) 2022.)
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- 2022
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50. The role of FYCO1-dependent autophagy in lens fiber cell differentiation.
- Author
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Khan SY, Ali M, Kabir F, Na CH, Delannoy M, Ma Y, Qiu C, Costello MJ, Hejtmancik JF, and Riazuddin SA
- Subjects
- Animals, Autophagy, Cell Differentiation, Endoplasmic Reticulum metabolism, Humans, Mice, Microtubule-Associated Proteins genetics, Transcription Factors metabolism, Cataract genetics, Cataract metabolism, Lens, Crystalline metabolism, Microtubule-Associated Proteins metabolism
- Abstract
FYCO1 (FYVE and coiled-coil domain containing 1) is an adaptor protein, expressed ubiquitously and required for microtubule-dependent, plus-end-directed transport of macroautophagic/autophagic vesicles. We have previously shown that loss-of-function mutations in FYCO1 cause cataracts with no other ocular and/or extra-ocular phenotype. Here, we show fyco1 homozygous knockout ( fyco1
-/- ) mice recapitulate the cataract phenotype consistent with a critical role of FYCO1 and autophagy in lens morphogenesis. Transcriptome coupled with proteome and metabolome profiling identified many autophagy-associated genes, proteins, and lipids respectively perturbed in fyco1-/- mice lenses. Flow cytometry of FYCO1 (c.2206C>T) knock-in (KI) human lens epithelial cells revealed a decrease in autophagic flux and autophagic vesicles resulting from the loss of FYCO1. Transmission electron microscopy showed cellular organelles accumulated in FYCO1 (c.2206C>T) KI lens-like organoid structures and in fyco1-/- mice lenses. In summary, our data confirm the loss of FYCO1 function results in a diminished autophagic flux, impaired organelle removal, and cataractogenesis. Abbreviations: CC: congenital cataracts; DE: differentially expressed; ER: endoplasmic reticulum; FYCO1: FYVE and coiled-coil domain containing 1; hESC: human embryonic stem cell; KI: knock-in; OFZ: organelle-free zone; qRT-PCR: quantitative real-time PCR; PE: phosphatidylethanolamine; RNA-Seq: RNA sequencing; SD: standard deviation; sgRNA: single guide RNA; shRNA: shorthairpin RNA; TEM: transmission electron microscopy; WT: wild type.- Published
- 2022
- Full Text
- View/download PDF
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