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Your search keyword '"Corilo, Yuri E."' showing total 160 results
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160 results on '"Corilo, Yuri E."'

2. The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource

Author

Eloe-Fadrosh, Emiley A, Ahmed, Faiza, Anubhav, Babinski, Michal, Baumes, Jeffrey, Borkum, Mark, Bramer, Lisa, Canon, Shane, Christianson, Danielle S, Corilo, Yuri E, Davenport, Karen W, Davis, Brandon, Drake, Meghan, Duncan, William D, Flynn, Mark C, Hays, David, Hu, Bin, Huntemann, Marcel, Kelliher, Julia, Lebedeva, Sofya, Li, Po-E, Lipton, Mary, Lo, Chien-Chi, Martin, Stanton, Millard, David, Miller, Kayd, Miller, Mark A, Piehowski, Paul, Jackson, Elais Player, Purvine, Samuel, Reddy, TBK, Richardson, Rachel, Rudolph, Marisa, Sarrafan, Setareh, Shakya, Migun, Smith, Montana, Stratton, Kelly, Sundaramurthi, Jagadish Chandrabose, Vangay, Pajau, Winston, Donald, Wood-Charlson, Elisha M, Xu, Yan, Chain, Patrick SG, McCue, Lee Ann, Mans, Douglas, Mungall, Christopher J, Mouncey, Nigel J, and Fagnan, Kjiersten

Subjects
Microbiology, Biological Sciences, Microbiome, Data Science, Genetics, Human Genome, Good Health and Well Being, Environmental Sciences, Information and Computing Sciences, Developmental Biology, Biological sciences, Chemical sciences, Environmental sciences
Abstract

The National Microbiome Data Collaborative (NMDC) Data Portal (https://data.microbiomedata.org) supports microbiome multi-omics data exploration and access through an integrated, distributed data framework aligned with the FAIR (Findable, Accessible, Interoperable and Reusable) data principles (1). The NMDC Data Portal currently hosts 10.2 terabytes of multi-omics microbiome data, spanning five data types (metagenomes, metatranscriptomes, metaproteomes, metabolomes, and natural organic matter characterizations), generated at two Department of Energy User Facilities, the Joint Genome Institute (JGI) at Lawrence Berkeley National Laboratory (LBNL) and the Environmental Molecular Systems Laboratory (EMSL) at Pacific Northwest National Laboratory (PNNL). A flexible data schema (https://github.com/microbiomedata/nmdc-schema) leveraging community-driven standards underpins how data is managed and integrated. Annotated multi-omic data products are produced by the NMDC workflows and linked through common biosamples to enable search capabilities based on environmental context, instrumentation, and functional attributes. As a pilot system, the NMDC Data Portal offers download capabilities and several search components, including interactive geographic visualization of samples; environmental classification distribution visualized through an interactive Sankey diagram; time-series slider to select longitudinal samples of interest; and an upset plot displaying the number of multi-omics data generated from the same biosample within a study.

Published
2022

3. The National Microbiome Data Collaborative: enabling microbiome science

Author

Wood-Charlson, Elisha M, Anubhav, Auberry, Deanna, Blanco, Hannah, Borkum, Mark I, Corilo, Yuri E, Davenport, Karen W, Deshpande, Shweta, Devarakonda, Ranjeet, Drake, Meghan, Duncan, William D, Flynn, Mark C, Hays, David, Hu, Bin, Huntemann, Marcel, Li, Po-E, Lipton, Mary, Lo, Chien-Chi, Millard, David, Miller, Kayd, Piehowski, Paul D, Purvine, Samuel, Reddy, TBK, Shakya, Migun, Sundaramurthi, Jagadish Chandrabose, Vangay, Pajau, Wei, Yaxing, Wilson, Bruce E, Canon, Shane, Chain, Patrick SG, Fagnan, Kjiersten, Martin, Stanton, McCue, Lee Ann, Mungall, Christopher J, Mouncey, Nigel J, Maxon, Mary E, and Eloe-Fadrosh, Emiley A

Subjects
Microbiology, Biological Sciences, Data Science, Microbiome, Humans, Intersectoral Collaboration, Microbiota, Medical Microbiology
Published
2020

9. Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource

Author

Kelliher, Julia M., Xu, Yan, Flynn, Mark C., Babinski, Michal, Canon, Shane, Cavanna, Eric, Clum, Alicia, Corilo, Yuri E., Fujimoto, Grant, Giberson, Cameron, Johnson, Leah Y.D., Li, Kaitlyn J., Li, Po-E, Li, Valerie, Lo, Chien-Chi, Lynch, Wendi, Piehowski, Paul, Prime, Kaelan, Purvine, Samuel, Rodriguez, Francisca, Roux, Simon, Shakya, Migun, Smith, Montana, Sarrafan, Setareh, Cholia, Shreyas, McCue, Lee Ann, Mungall, Chris, Hu, Bin, Eloe-Fadrosh, Emiley A., and Chain, Patrick S.G.

Published
2024
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10. MetaboDirect: An Analytical Pipeline for the processing of FTICR-MS-based Metabolomics Data

Author

Ayala-Ortiz, Christian, primary, Graf-Grachet, Nathalia, additional, Freire-Zapata, Viviana, additional, Fudyma, Jane, additional, Hildebrand, Gina, additional, AminiTabrizi, Roya, additional, Howard-Varona, Cristina, additional, Corilo, Yuri E., additional, Hess, Nancy, additional, Duhaime, Melissa, additional, Sullivan, Matthew, additional, and Tfaily, Malak, additional

Published
2022
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17. Petroleomics by EASI([+ or -]) FT-ICR MS

Author

Corilo, Yuri E., Vaz, Boniek G., Simas, Rosineide C., Nascimento, Heliara D. Lopes, Klitzke, Clecio F., Pereira, Rosana C.L., Bastos, Wagner L., Neto, Eugenio V. Santos, Rodgers, Ryan P., and Eberlin, Marcos N.

Subjects
Mass spectrometry -- Methods, Mass spectrometry -- Technology application, Ionization -- Methods, Fourier transformations -- Research, Petroleum -- Chemical properties, Technology application, Chemistry
Abstract

An ambient ionization/desorption technique, namely, easy ambient sonic-spray ionization mass spectrometry (EASI), has been applied to crude oil samples. From a single droplet of the sample placed on an inert surface, EASI([+ or -]) is shown to promote efficient desorption and ionization of a myriad of polar components via the action of its cloud of very minute supersonic bipolar charged droplets. The gaseous [[M + H].sup.+] and [[M - H].sup.-] ions concurrently formed by EASI([+ or -]) were analyzed by Fourier transform mass spectrometry (FT-ICR MS), and a total of ~6000 acidic and basic components have been attributed. EASI(+ or -]) FT-ICR MS of crude oils is show to be almost as fast as ESI(+)/ESI(-) FT-ICR MS, providing similar compositional information of polar components and spectral quality comparable to that of a commercial nonochip-based robotic ESI device. EASI([+ or -]) requires no sample workup thus eliminating risks of contamination during sample manipulation and memory effects because of carry over in pumping ESI lines. More importantly, EASI([+ or -]) is a voltoge-free ionization technique therefore eliminating risks of redox processes or duality of ionization mechanisms that can be observed in voltage-assisted processes. Data visualization via typical petroleomic plots confirms the similarity of the compositional information provided by EASI(+ or -]) compared to ESI(+)/ESI(-). The ambient EASI([+ or -]) FTICR MS method requires no voltage switching in changing the ion polarity mode, offering a workup, heating and voltage-free protocol for petroleomic studies performed at open atmosphere directly on the undisturbed crude oil sample. 10.1021/ac100673v

Published
2010

18. Probing Aggregation Tendencies in Asphaltenes by Gel Permeation Chromatography. Part 2: Online Detection by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry and Inductively Coupled Plasma Mass Spectrometry

Author

Putman, Jonathan C., primary, Moulian, Rémi, additional, Smith, Donald F., additional, Weisbrod, Chad R., additional, Chacón-Patiño, Martha L., additional, Corilo, Yuri E., additional, Blakney, Greg T., additional, Rumancik, Leah E., additional, Barrère-Mangote, Caroline, additional, Rodgers, Ryan P., additional, Giusti, Pierre, additional, Marshall, Alan G., additional, and Bouyssière, Brice, additional

Published
2020
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24. Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Characterization of Athabasca Oil Sand Process-Affected Waters Incubated in the Presence of Wetland Plants

Author

Ajaero, Chukwuemeka, primary, McMartin, Dena W., additional, Peru, Kerry M., additional, Bailey, Jon, additional, Haakensen, Monique, additional, Friesen, Vanessa, additional, Martz, Rachel, additional, Hughes, Sarah A., additional, Brown, Christine, additional, Chen, Huan, additional, McKenna, Amy M., additional, Corilo, Yuri E., additional, and Headley, John V., additional

Published
2017
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30. MSn of the six isomers of (GlcN)(2)(GlcNAc)(2) aminoglucan tetrasaccharides (diacetylchitotetraoses) rules of fragmentation for the sodiated molecules and application to sequence analysis of hetero-chitooligosaccharides

Author

Vijayakrishnan, Balakumar, Issaree, Arisara, Corilo, Yuri E., Ferreira, Christina Ramires, Eberlin, Marcos N., and Peter, Martin G.

Subjects
Institut für Chemie
Abstract

The six possible isomers of di-N-acetylchitotetraoses [AADD, ADDA, ADAD, DADA, DAAD, and DDAA, where D stands for 2-amino-2-deoxy-3-D-glucose (GlcN) and A for 2-acetamido-2-deoxy-beta-D-glucose (GlcNAc)] were analyzed by ESI(+)-MSn. Collision induced dissociation via MSn experiments were performed for the sodiated molecules of m/z 769 [M+Na](+) for each isomer, and fragments were generated mainly by glycosidic bond and cross-ring cleavages. Rules of fragmentation were then established. A reducing end D residue yields the (O.2)A(4) cross-ring [M-59+Na](+) fragment of m/z 710 as the most abundant, whereas isomers containing a reducing end A prefer to lose water to form the [M-18+Na](+) ion of m/z 751, as well as abundant (O.2)A(4) cross-ring [M-101+Na](+) fragments of m/z 668 and B-3 [M-221+Na](+) ions of m/z 548. MS3 of C- and Y-type ions shows analogous fragmentation behaviour that allows identification of the reducing end next-neighbour residue. Due to gas-phase anchimeric assistance, B-type cleavage between the glycosidic oxygen and the anomeric carbon atom is favoured when the glycon is an A residue. Relative ion abundances are generally in the order B >> C > Y, but may vary depending on the next neighbour towards the non-reducing end. These fragmentation rules were used for partial sequence analysis of hetero-chitooligosaccharides of the composition D(2)A(3), D(3)A(3), D(2)A(4), D(4)A(3), and D(3)A(4).

Published
2011

38. Precision in Petroleomics via Ultrahigh Resolution Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Author

Pereira, Rosana C. L., primary, Simas, Rosineide C., additional, Corilo, Yuri E., additional, Vaz, Boniek G., additional, Klitzke, Clecio F., additional, Schmidt, Eduardo M., additional, Pudenzi, Marcos A., additional, Silva, Raissa M. C. F., additional, Moraes, Erica T., additional, Bastos, Wagner L., additional, Eberlin, Marcos N., additional, and Nascimento, Heliara D. Lopes, additional

Published
2013
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41. Baseline resolution of isomers by traveling wave ion mobility mass spectrometry: investigating the eff ects of polarizable drift gases and ionic charge distribution

Author

Lalli, Priscila M., primary, Corilo, Yuri E., additional, Fasciotti, Maíra, additional, Riccio, Maria Francesca, additional, de Sá, Gilberto Fernandes, additional, Daroda, Romeu J., additional, Souza, Gustavo H. M. F., additional, McCullagh, Michael, additional, Bartberger, Michael D., additional, Eberlin, Marcos N., additional, and Campuzano, Iain, additional

Published
2013
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42. Baseline resolution of isomers by traveling wave ion mobility mass spectrometry: investigating the effects of polarizable drift gases and ionic charge distribution

Author

Lalli, Priscila M., primary, Corilo, Yuri E., additional, Fasciotti, Maíra, additional, Riccio, Maria Francesca, additional, de Sa, Gilberto F., additional, Daroda, Romeu J., additional, Souza, Gustavo H. M. F., additional, McCullagh, Michael, additional, Bartberger, Michael D., additional, Eberlin, Marcos N., additional, and Campuzano, Iain D. G., additional

Published
2013
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43. Whisky analysis by electrospray ionization-Fourier transform mass spectrometry

Author

Garcia, Jerusa S., primary, Vaz, Boniek G., additional, Corilo, Yuri E., additional, Ramires, Christina F., additional, Saraiva, Sérgio A., additional, Sanvido, Gustavo B., additional, Schmidt, Eduardo M., additional, Maia, Denison R.J., additional, Cosso, Ricardo G., additional, Zacca, Jorge J., additional, and Eberlin, Marcos Nogueira, additional

Published
2013
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48. Comprehensive Chemical Composition of Gas Oil Cuts Using Two-Dimensional Gas Chromatography with Time-of-Flight Mass Spectrometry and Electrospray Ionization Coupled to Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Author

Ávila, Bárbara M. F., primary, Vaz, Boniek G., additional, Pereira, Ricardo, additional, Gomes, Alexandre O., additional, Pereira, Rosana C. L., additional, Corilo, Yuri E., additional, Simas, Rosineide C., additional, Nascimento, Heliara D. Lopes, additional, Eberlin, Marcos N., additional, and Azevedo, Débora A., additional

Published
2012
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49. Gasoline, Kerosene, and Diesel Fingerprinting via Polar Markers

Author

Haddad, Renato, primary, Regiani, Thaís, additional, Klitzke, Clécio F., additional, Sanvido, Gustavo B., additional, Corilo, Yuri E., additional, Augusti, Daniella V., additional, Pasa, Vânya M. D., additional, Pereira, Rita C. C., additional, Romão, Wanderson, additional, Vaz, Boniek G., additional, Augusti, Rodinei, additional, and Eberlin, Marcos N., additional

Published
2012
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