47 results on '"Cordonnier, T."'
Search Results
2. 3D environment on human mesenchymal stem cells differentiation for bone tissue engineering
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Cordonnier, T., Layrolle, P., Gaillard, Julien, Langonné, Alain, Sensebé, L., Rosset, P., and Sohier, J.
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- 2010
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3. Atomistic study of the effect of B addition in the FeAl compound
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Raulot, J. M., Fraczkiewicz, A., Cordonnier, T., Aourag, H., and Grosdidier, T.
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- 2008
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4. Managing mixed stands can mitigate severe climate change impacts on ecosystem functioning
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Jourdan, M., primary, Cordonnier, T., additional, Dreyfus, P., additional, Riond, C., additional, de Coligny, F., additional, and Morin, X., additional
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- 2020
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5. Des pratiques de gestion aux services écosystémiques. Le cas des futaies irrégulières de montagne, p. 81-92
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Cordonnier, T., Lafond, V., Courbaud, B., Cécillon, L., Loucougaray, G., and Rey, F.
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- 2020
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6. Forêts de montagne et changement climatique : impacts et adaptations
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Labonne, S., Cordonnier, T., Kunstler, Georges, Fuhr, M., Laboratoire des EcoSystèmes et des Sociétés en Montagne (UR LESSEM), and Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
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forests ,climatic change ,FORET ,AMENAGEMENT DU TERRITOIRE ,land use planning ,mountains ,adaptation ,mountain forest ,FORET DE MONTAGNE ,environmental impact ,CHANGEMENT CLIMATIQUE ,[SDE]Environmental Sciences ,MONTAGNE ,IMPACT SUR L'ENVIRONNEMENT - Abstract
This review identifies the main impacts of climate change on mountain forests, mainly in Europe, and the management practices proposed for forest adaption. The rise in temperatures, more frequent droughts and the multiplication of extreme events should lead, especially below 1000m in altitude, to the disappearance of highly drought-intolerant tree species (spruce, Scots pine) and their replacement by deciduous trees. In addition, recruitment of some species (fir, beech) is observed at higher altitudes and the duration of the growing season is increasing. Management recommendations for forest adaptation to climate change focus on reducing tree species' vulnerability to water stress and pests, as well as increasing their resilience and ability to respond to extreme weather events. They require genetic improvements and practices that encourage the establishment of suitable species, reduce water consumption and reduce the exposure of stands to risk.; Cette étude bibliographique recense les principaux impacts du changement climatique sur les forêts de montagne, principalement européennes, ainsi que les pratiques de gestion proposées pour adapter les forêts à ces changements. La hausse des températures, les sécheresses plus fréquentes et la multiplication des évènements extrêmes devraient entrainer, surtout en-deçà de 1000m d'altitude, une réduction des essences les moins tolérantes à la sécheresse (épicéa, pin sylvestre) et leur remplacement par des feuillus. D'ores et déjà, le recrutement de certaines essences (sapin, hêtre) est observé à des altitudes plus élevées et la durée de la saison de végétation augmente. Les préconisations de gestion pour l'adaptation des forêts au changement climatique s'attachent à réduire la vulnérabilité des essences au stress hydrique et aux parasites, ainsi qu'à renforcer leur résilience et leur capacité de réponse aux évènements climatiques extrêmes. Elles passent par des améliorations génétiques et des pratiques qui favorisent l'installation d'espèces adaptées, réduisent la consommation d'eau et l'exposition des peuplements aux risques.
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- 2018
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7. L'inégalité des tailles des arbres diminue la productivité : une analyse combinant des données d'inventaire pour 10 espèces européennes et un modèle de compétition pour la lumière
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Bourdier, T., Cordonnier, T., Kunstler, G., Piedallu, C., Lagarrigues, G., Courbaud, B., Ecosystèmes montagnards (UR EMGR), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Laboratoire d'Etudes des Ressources Forêt-Bois (LERFoB), and AgroParisTech-Institut National de la Recherche Agronomique (INRA)
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INVENTAIRE FORESTIER ,forestry production ,vegetation dynamics ,BIODIVERSITE ,forest inventories ,PRODUCTION FORESTIERE ,DISPONIBILITE EN LUMIERE ,[SDE]Environmental Sciences ,ACCROISSEMENT DES ARBRES ,biological competition ,light availability ,COMPETITION BIOLOGIQUE ,DYNAMIQUE DE VEGETATION ,biodiversity - Abstract
International audience; Plant structural diversity is usually considered as beneficial for ecosystem functioning. For instance, numerous studies have reported positive species diversity-productivity relationships in plant communities. However, other aspects of structural diversity such as individual size inequality have been far less investigated. In forests, tree size inequality impacts directly tree growth and asymmetric competition, but consequences on forest productivity are still indeterminate. In addition, the effect of tree size inequality on productivity is likely to vary with species shade-tolerance, a key ecological characteristic controlling asymmetric competition and light resource acquisition. Using plot data from the French National Geographic Agency, we studied the response of stand productivity to size inequality for ten forest species differing in shade tolerance. We fitted a basal area stand production model that included abiotic factors, stand density, stand development stage and a tree size inequality index. Then, using a forest dynamics model we explored whether mechanisms of light interception and light use efficiency could explain the tree size inequality effect observed for three of the ten species studied. Size inequality negatively affected basal area increment for seven out of the ten species investigated. However, this effect was not related to the shade tolerance of these species. According to the model simulations, the negative tree size inequality effect could result both from reduced total stand light interception and reduced light use efficiency. Our results demonstrate that negative relationships between size inequality and productivity may be the rule in tree populations. The lack of effect of shade tolerance indicates compensatory mechanisms between effect on light availability and response to light availability. Such a pattern deserves further investigations for mixed forestswhere complementarity effects between species are involved. When studying the effect of structural diversity on ecosystem productivity, tree size inequality is a major facet that should be taken into account.
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- 2016
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8. Modéliser et quantifier les services écosystémiques forestiers à l'échelle des petits territoires
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Cordonnier, T., Berger, F., Chauvin, C., Courbaud, B., Fuhr, M., Tenerelli, P., Lafond, V., Luque, S., Mao, Z., Ecosystèmes montagnards (UR EMGR), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Institute of Terrestrial Ecosystems (ITES), Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut National de la Recherche Agronomique (INRA)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD [France-Sud]), Department of Environmental Sciences, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology in Zürich [Zürich] (ETH Zürich), and Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])
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forests ,modelling ,FORET ,[SDE]Environmental Sciences ,SERVICE ECOSYSTEMIQUE ,territory ,cartography ,MODELISATION ,CARTOGRAPHIE ,TERRITOIRE ,ecosystem service - Abstract
[Departement_IRSTEA]Territoires [TR1_IRSTEA]SEDYVIN; With 16.5 million hectares, the forest plays a major role in France, providing many provisioning, regulating and cultural ecosystem services. The evaluation of these ecosystem services and their evolution under various socio-economic scenarios represents a major challenge for scientists and decision makers, especially at small region scales for which national data or indicators cannot be used. In recent years significant progress has been made towards a better evaluation of ecosystem services. These advances are usually based on the joint use of databases, remote sensing tools and forest dynamics models applied at different scales. In this article, we discuss the advantages and limitations of these approaches using three examples dealing with the Isère French department. These examples highlight some technical and scientific issues to be overcome in the future. A possible way of progress in the short term seems to lie in the construction of a processing chain that explicitly couples the acquisition of remote sensing data, the initialization of simulations using forest dynamics models and the evaluation ecosystem services by adapted linker functions.; La forêt occupe près de 30 % du territoire français et fournit de nombreux services de production, de régulation et culturels. L'évaluation de ces services écosystémiques et de leurs évolutions sous différents scénarios socio-économiques pose des défis majeurs pour les scientifiques et les décideurs, qui plus est à l'échelle des petits territoires pour lesquels les données ou indicateurs élaborés à l'échelle nationale ne sont guère transposables. Des progrès importants ont été réalisés ces dernières années pour favoriser une meilleure évaluation de certains services. Ces progrès reposent le plus souvent sur l'utilisation conjointe de bases de données, d'outils de télédétection et de modèles démographiques appliqués à différentes échelles. Dans cet article, nous discutons des intérêts et limites de quelque unes de ces approches en prenant des exemples concernant des territoires de l'Isère. Ces exemples permettent de mettre en exergue certains verrous techniques et scientifiques. Une voie de progrès possible à court terme nous semble résider dans la construction d'une chaine de traitement qui articule l'acquisition de données de télédétection, l'initialisation de modèles de dynamique forestière et l'évaluation de la production de services par des fonctions de lien pertinentes.
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- 2016
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9. Future ecosystem services from European mountain forests under climate change
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Mina, M., Bugmann, H., Cordonnier, T., Irauschek, F., Klopcic, Matija, Pardos, Marta, Cailleret, Maxime, Mina, M., Bugmann, H., Cordonnier, T., Irauschek, F., Klopcic, Matija, Pardos, Marta, and Cailleret, Maxime
- Abstract
Ecosystem services (ES) from mountain forests are highly relevant for human societies. ES with a direct economic support function (e.g. timber production), regulatory services (e.g. protection from natural hazards) and cultural services (e.g. recreation) are likely to be affected strongly by a rapidly changing climate. To evaluate whether adverse climate change effects on ES can be counteracted by adapting management, dynamic models and indicator-based assessments are needed. We applied a forest dynamic model in case study areas of four European mountain regions and evaluated the future supply of four ES – timber production, carbon sequestration, biodiversity and protection against natural hazards – using state-of-the-art ES indicators. Forest dynamics were simulated under three management scenarios (no management, business-as-usual and alternative management) and five climate change projections for selected representative stand types in each region. We analysed potential trade-offs and synergies between ES and evaluated future changes among regions, forest stands, climate and management scenarios. Impacts of climate change on the provision of multiple ES were found to be highly heterogeneous and to depend on the region, site and future climate. In the absence of large-scale natural disturbance (not considered), protection services, carbon stock and deadwood abundance (proxy for biodiversity) benefitted from no management in all regions. Negative impacts of climate change were evident for the provision of multiple ES but limited to the most severe climate scenarios and low-elevation stands. Synergies and trade-offs between the majority of ES were found to be sensitive to the choice of management strategy and – in some regions – to climate change. Synthesis and applications. Management regimes in European mountain forests should be regionally adapted to stand and site conditions. Although in some cases alternative management regimes may be more suitable than current
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- 2017
10. Participation de chercheurs et d’acteurs à la production de connaissances pour l’action. Retour sur une expérience de jeu de territoire « Gestion intégrée de la forêt du Vercors »
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Lardon, Sylvie, Bouchaud, Monique, Caron, Armelle, Chambon, Philippe, Chauvin, C., Cordonnier, T., Johany, François, Planchat, Claire, Von Korff, Y., Mutations des activités des espaces et des formes d'organisation dans les territoires ruraux ( METAFORT ), Institut National de la Recherche Agronomique ( INRA ) -AgroParisTech-VetAgro Sup ( VAS ) -Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture ( IRSTEA ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Mutations des activités des espaces et des formes d'organisation dans les territoires ruraux (UMR METAFORT), Institut National de la Recherche Agronomique (INRA)-AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Mutations des activités des espaces et des formes d'organisation dans les territoires ruraux (METAFORT), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech, AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique (INRA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Estel, Fanny, and Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech
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Production de connaissances ,Jeu de territoire ,[SHS.GEO] Humanities and Social Sciences/Geography ,[SHS.GEO]Humanities and Social Sciences/Geography ,ComputingMilieux_MISCELLANEOUS ,[ SHS.GEO ] Humanities and Social Sciences/Geography - Abstract
International audience
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- 2015
11. The effects of even-aged and uneven-aged management systems on biodiversity
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Cordonnier, T., Gosselin, F., Ecosystèmes montagnards (UR EMGR), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), and Ecosystèmes forestiers (UR EFNO)
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GESTION FORESTIERE ,BIODIVERSITE ,[SDE]Environmental Sciences ,MODE DE TRAITEMENT SYLVICOLE ,FUTAIE REGULIERE - Abstract
Colloque ONF "Quels Investissements pour quelles forêts publiques demain?", Velaine-en-Haye, FRA, 11-/06/2014 - 12/06/2014; L’objet de cet exposé est de comparer les traitements réguliers/irréguliers de futaie sur le plan de leurs incidences sur la biodiversité ordinaire.
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- 2014
12. Comment accroitre les prélèvements de bois tout en préservant la biodiversité ? Le « jeu de territoire » un dispositif participatif au service de l’apprentissage collectif nécessaire à la gestion des contradictions
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Caron , Armelle, Chambon , Philippe, Lardon , Sylvie, Bouchaud , Monique, Cordonnier , T., Mutations des activités des espaces et des formes d'organisation dans les territoires ruraux (METAFORT), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech, CFort, Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech, ASRDLF, Mutations des activités des espaces et des formes d'organisation dans les territoires ruraux (UMR METAFORT), AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique (INRA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique (INRA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique (INRA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech, Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroParisTech, Institut National de la Recherche Agronomique (INRA)-AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Institut National de la Recherche Agronomique (INRA)-AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut National de la Recherche Agronomique (INRA)-AgroParisTech-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Estel, Fanny, Mutations des activités des espaces et des formes d'organisation dans les territoires ruraux ( METAFORT ), Institut National de la Recherche Agronomique ( INRA ) -AgroParisTech-VetAgro Sup ( VAS ) -Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture ( IRSTEA ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, and Institut National de la Recherche Agronomique ( INRA ) -AgroParisTech-VetAgro Sup ( VAS ) -Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture ( IRSTEA ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique ( INRA ) -AgroParisTech-VetAgro Sup ( VAS ) -Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture ( IRSTEA ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement
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Jeu de territoire ,[SHS.GEO] Humanities and Social Sciences/Geography ,Biodiversité ,[SHS.GEO]Humanities and Social Sciences/Geography ,ComputingMilieux_MISCELLANEOUS ,[ SHS.GEO ] Humanities and Social Sciences/Geography - Abstract
International audience
- Published
- 2012
13. From metaphor to action: implementing viable forest ecosystem management in landscapes. The FORGECO project
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Cordonnier, T., Caron, A., Chauvin, C., Dreyfus, Philippe, Dupouey, Jean-Luc, Ginisty, C., Mathias, J.D., De Morogues, F., Robert, N., Rochel, X., Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Ecole Nationale du Génie Rural, des Eaux et des Forêts (ENGREF), Ecologie des Forêts Méditerranéennes (URFM), Institut National de la Recherche Agronomique (INRA), Ecologie et Ecophysiologie Forestières [devient SILVA en 2018] (EEF), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Institut Technologique Forêt Cellulose Bois-construction Ameublement (FCBA), Inventaire Forestier National (IFN), and Université Nancy 2
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arbre forestier ,aide à la décision ,[SDV]Life Sciences [q-bio] ,rhône alpes ,pays de la loire ,gestion des ressources ,centre ,isere ,val de loire ,dynamique des populations ,drome ,ComputingMilieux_MISCELLANEOUS ,écosystème forestier ,modélisation - Abstract
International audience
- Published
- 2010
14. Du diagnostic à l’action : créer les conditions d’une gestion intégrée et viable des écosystèmes forestiers sur les territoires. Le projet FORGECO
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Cordonnier, T., De Morogues, F., Caron, A., Chauvin, C., Dreyfus, Philippe, Ginisty, C., Dupouey, Jean-Luc, Mathias, J.D., Robert, N., Rochel, X., Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Institut Technologique Forêt Cellulose Bois-construction Ameublement (FCBA), Ecole Nationale du Génie Rural, des Eaux et des Forêts (ENGREF), Ecologie des Forêts Méditerranéennes (URFM), Institut National de la Recherche Agronomique (INRA), Ecologie et Ecophysiologie Forestières [devient SILVA en 2018] (EEF), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Inventaire Forestier National (IFN), and Université Nancy 2
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arbre forestier ,aide à la décision ,[SDV]Life Sciences [q-bio] ,rhône alpes ,pays de la loire ,gestion des ressources ,centre ,isere ,val de loire ,dynamique des populations ,drome ,ComputingMilieux_MISCELLANEOUS ,écosystème forestier ,modélisation - Abstract
National audience
- Published
- 2010
15. Protection against rockfall along a maturity gradient in mountain forests
- Author
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Fuhr, M., primary, Bourrier, F., additional, and Cordonnier, T., additional
- Published
- 2015
- Full Text
- View/download PDF
16. Gestion multifonctionnelle des forêts de montagne, quels compromis entre les fonctions de protection et conservation ?
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Fuhr, M., Clouet, N., Cordonnier, T., Berger, F., Ecosystèmes montagnards (UR EMGR), and Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
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lcsh:GE1-350 ,RISQUE NATUREL ,13. Climate action ,BIODIVERSITE ,[SDE]Environmental Sciences ,General Earth and Planetary Sciences ,lcsh:Environmental technology. Sanitary engineering ,15. Life on land ,FORET DE MONTAGNE ,FORET DE PROTECTION DE MONTAGNE ,lcsh:TD1-1066 ,lcsh:Environmental sciences ,General Environmental Science - Abstract
Les forêts de montagne sont reconnues pour leur multifonctionnalité et en particulier pour leurs fonctions de conservation de la biodiversité et de protection contre les chutes de blocs. Nombre d'entre elles s'inscrivent dans un processus de succession secondaire dans lequel on peut distinguer plusieurs stades aux structures diamétriques bien différenciées. Ces structures diamétriques influencent les deux fonctions de conservation et de protection. Les stades avancés de la succession, caractéristiques de la forêt dite mature, sont les stades les plus intéressants pour la conservation : le stade vieillissement, encore dominé par la cohorte initiale, en raison des dimensions atteintes par les arbres, les stades ultérieurs, stade renouvellement et stade jardiné, en raison de l'hétérogénéité des dimensions des arbres. Les stades les plus efficaces pour protéger contre les chutes de blocs sont les stades les plus denses, c'est-à-dire le stade initial de la succession et le stade jardiné. Dans certains contextes de la forêt de montagne, le stade jardiné, qui optimise les deux fonctions, est difficile à pérenniser pour le gestionnaire. En conséquence, lorsque la fonction de protection est déterminante, il est recommandé d'anticiper le renouvellement des peuplements en créant des ouvertures suffisantes pour réinitialiser la succession (de 0,1 à 0,5 ha) et en organisant la répartition spatiale et temporelle de ces ouvertures à l'échelle d'un versant boisé, de manière à créer une mosaïque pérenne de bouquets aux stades installation, auto-éclaircie et vieillissement. Dans cette mosaïque, les stades tardifs de la succession, les plus intéressants pour la biodiversité, sont souvent sous-représentés. La mise en place d'îlots de vieux arbres, judicieusement localisés, permet de compenser cette sous-représentativité. / Mountain forests are multifunctional forests that play a key role both on biodiversity conservation and rockfall protection. Most of these forests are under a process of secondary succession, where we can distinguish several stages with well differentiated diametric structures. These diametric structures strongly influence the two functions of biodiversity conservation and rockfall protection. The advanced stages of succession, representing mature forest, are the most important stages for conservation. The first one, so-called ageing stage and still dominated by the initial cohort, contains numerous very large dominant trees. The two following ones, so-called renewal and irregular stages, are very heterogeneous in terms of tree dimensions. The most effective stages to protect from rockfalls are the densest stages, i.e. the first stage of the succession, so-called initial stage, and the irregular stage. In certain mountain forest contexts, the irregular stage which optimizes the two functions is difficult to perennialize for forest managers. Consequently, when the function of protection is a priority, it is recommended to anticipate the renewal of the stands by creating openings large enough to promote a new succession (from 0.1 to 0.5 ha). Forest management then organizes the spatial and temporal distribution of these openings on a forested slope and aims at creating a perennial mosaic of small groups of trees at initial, intermediate (self-thinning) and ageing stages. The latest stages of the succession, the most interesting in terms of biodiversity, are often under-represented within this forest mosaic. The installation of small islands of sensible located old growth stands makes it possible to compensate for this under-representativeness.
- Published
- 2010
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17. Raisonner la gestion des hêtraies mélangées
- Author
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Collet, C., Balandier, P., Cordonnier, T., Dreyer, E., Dreyfus, P., Lefevre, F., Laboratoire d'Etudes des Ressources Forêt-Bois (LERFoB), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Ecosystèmes forestiers (UR EFNO), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), ONF Nord Ouest, OFFICE NATIONAL DES FORETS, Ecologie et Ecophysiologie Forestières [devient SILVA en 2018] (EEF), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Unité de Recherches Forestières Méditerranéennes (URFM), Institut National de la Recherche Agronomique (INRA), and AgroParisTech-Institut National de la Recherche Agronomique (INRA)
- Subjects
REGENERATION NATURELLE ,GESTION FORESTIERE ,FORET ,HETRE ,DYNAMIQUE DU PEUPLEMENT ,AMENAGEMENT A BUTS MULTIPLES ,COMPETITION ,DIVERSITE GENETIQUE ,CONCURRENCE INTERSPECIFIQUE ,DIVERSITE ,MODELISATION ,DEMO GENETIQUE ,DYNAMIQUE ,DIVERSITE FONCTIONNELLE ,FAGUS SYLVATICA ,DISPONIBILITE EN LUMIERE ,PEUPLEMENT MELANGE ,ARBRE ,[SDV.SA.SF]Life Sciences [q-bio]/Agricultural sciences/Silviculture, forestry ,REGENERATION ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,LUMIERE ,FORET MELANGEE - Abstract
Les hêtraies mélangées sont un enjeu important pour la forêt française. De nouveaux outils existent ou sont en cours de développement, pour mettre en ½uvre une gestion multifonctionnelle de ces forêts, basés sur une modélisation de la dynamique du mélange et des différentes essences qui les constituent. / Mixed beech stands are important for the French forest. New tools are developed for a better multi-functional management of these forests, based on the modelling of their dynamics.
- Published
- 2009
18. 50 Silencing Notch-1 and Notch-3 promotes epithelial-to-mesenchymal transition (EMT) and self-renewal potential in human bladder cancer
- Author
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Jaeger, W., primary, Hayashi, T., additional, Awrey, S., additional, Gust, K.M., additional, Cordonnier, T., additional, Li, N., additional, Buttyan, R., additional, Van Der Kwast, T.H., additional, Van Rhijn, B.W., additional, Thüroff, J.W., additional, and Black, P.C., additional
- Published
- 2013
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19. A clinically used association of bone marrow and calcium phosphate compared with an in vitro engineered MSC calcium phosphate construct for cranial bone regeneration
- Author
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Corre⁎, P., primary, Merceron, C., additional, Durand, N., additional, Pilet, P., additional, Cordonnier, T., additional, Guicheux, J., additional, and Weiss, P., additional
- Published
- 2011
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20. 3D environment on human mesenchymal stem cells differentiation for bone tissue engineering
- Author
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Cordonnier, T., primary, Layrolle, P., additional, Gaillard, Julien, additional, Langonné, Alain, additional, Sensebé, L., additional, Rosset, P., additional, and Sohier, J., additional
- Published
- 2009
- Full Text
- View/download PDF
21. Adaptive forest management - Incorporating acouisition of knowledge into management objectives,La gestion forestière adaptative: Intégrer l'acquisition de connaissances parmi les objectifs de gestion
- Author
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Cordonnier, T. and Frédéric Gosselin
22. Determining a clinically relevant bone engineering method. An 'all in one' study in nude mice
- Author
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Corre, P., Merceron, C., Durand, N., Colombeix, C., Pilet, P., Sourice, S., Cordonnier, T., Remy, S., Mercier, J. -M, Jerome Guicheux, and Weiss, P.
23. Diameter, height and species of 42 million trees in three European landscapes generated from field data and airborne laser scanning data.
- Author
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Aussenac R, Monnet JM, Klopčič M, Hawryło P, Socha J, Mahnken M, Gutsch M, Cordonnier T, and Vallet P
- Abstract
Ecology and forestry sciences are using an increasing amount of data to address a wide variety of technical and research questions at the local, continental and global scales. However, one type of data remains rare: fine-grain descriptions of large landscapes. Yet, this type of data could help address the scaling issues in ecology and could prove useful for testing forest management strategies and accurately predicting the dynamics of ecosystem services. Here we present three datasets describing three large European landscapes in France, Poland and Slovenia down to the tree level. Tree diameter, height and species data were generated combining field data, vegetation maps and airborne laser scanning (ALS) data following an area-based approach. Together, these landscapes cover more than 100 000 ha and consist of more than 42 million trees of 51 different species. Alongside the data, we provide here a simple method to produce high-resolution descriptions of large landscapes using increasingly available data: inventory and ALS data. We carried out an in-depth evaluation of our workflow including, among other analyses, a leave-one-out cross validation. Overall, the landscapes we generated are in good agreement with the landscapes they aim to reproduce. In the most favourable conditions, the root mean square error (RMSE) of stand basal area (BA) and mean quadratic diameter (Dg) predictions were respectively 5.4 m
2 .ha-1 and 3.9 cm, and the generated main species corresponded to the observed main species in 76.2% of cases., Competing Interests: No competing interests were disclosed., (Copyright: © 2023 Aussenac R et al.)- Published
- 2023
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24. Functional traits and climate drive interspecific differences in disturbance-induced tree mortality.
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Barrere J, Reineking B, Cordonnier T, Kulha N, Honkaniemi J, Peltoniemi M, Korhonen KT, Ruiz-Benito P, Zavala MA, and Kunstler G
- Subjects
- Climate Change, Probability, Forests, Fires
- Abstract
With climate change, natural disturbances such as storm or fire are reshuffled, inducing pervasive shifts in forest dynamics. To predict how it will impact forest structure and composition, it is crucial to understand how tree species differ in their sensitivity to disturbances. In this study, we investigated how functional traits and species mean climate affect their sensitivity to disturbances while controlling for tree size and stand structure. With data on 130,594 trees located on 7617 plots that were disturbed by storm, fire, snow, biotic or other disturbances from the French, Spanish, and Finnish National Forest Inventory, we modeled annual mortality probability for 40 European tree species as a function of tree size, dominance status, disturbance type, and intensity. We tested the correlation of our estimated species probability of disturbance mortality with their traits and their mean climate niches. We found that different trait combinations controlled species sensitivity to disturbances. Storm-sensitive species had a high height-dbh ratio, low wood density and high maximum growth, while fire-sensitive species had low bark thickness and high P50. Species from warmer and drier climates, where fires are more frequent, were more resistant to fire. The ranking in disturbance sensitivity between species was overall consistent across disturbance types. Productive conifer species were the most disturbance sensitive, while Mediterranean oaks were the least disturbance sensitive. Our study identified key relations between species functional traits and disturbance sensitivity, that allows more reliable predictions of how changing climate and disturbance regimes will impact future forest structure and species composition at large spatial scales., (© 2023 John Wiley & Sons Ltd.)
- Published
- 2023
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25. Significant increase in natural disturbance impacts on European forests since 1950.
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Patacca M, Lindner M, Lucas-Borja ME, Cordonnier T, Fidej G, Gardiner B, Hauf Y, Jasinevičius G, Labonne S, Linkevičius E, Mahnken M, Milanovic S, Nabuurs GJ, Nagel TA, Nikinmaa L, Panyatov M, Bercak R, Seidl R, Ostrogović Sever MZ, Socha J, Thom D, Vuletic D, Zudin S, and Schelhaas MJ
- Subjects
- Animals, Trees, Forests, Europe, Ecosystem, Coleoptera
- Abstract
Over the last decades, the natural disturbance is increasingly putting pressure on European forests. Shifts in disturbance regimes may compromise forest functioning and the continuous provisioning of ecosystem services to society, including their climate change mitigation potential. Although forests are central to many European policies, we lack the long-term empirical data needed for thoroughly understanding disturbance dynamics, modeling them, and developing adaptive management strategies. Here, we present a unique database of >170,000 records of ground-based natural disturbance observations in European forests from 1950 to 2019. Reported data confirm a significant increase in forest disturbance in 34 European countries, causing on an average of 43.8 million m
3 of disturbed timber volume per year over the 70-year study period. This value is likely a conservative estimate due to under-reporting, especially of small-scale disturbances. We used machine learning techniques for assessing the magnitude of unreported disturbances, which are estimated to be between 8.6 and 18.3 million m3 /year. In the last 20 years, disturbances on average accounted for 16% of the mean annual harvest in Europe. Wind was the most important disturbance agent over the study period (46% of total damage), followed by fire (24%) and bark beetles (17%). Bark beetle disturbance doubled its share of the total damage in the last 20 years. Forest disturbances can profoundly impact ecosystem services (e.g., climate change mitigation), affect regional forest resource provisioning and consequently disrupt long-term management planning objectives and timber markets. We conclude that adaptation to changing disturbance regimes must be placed at the core of the European forest management and policy debate. Furthermore, a coherent and homogeneous monitoring system of natural disturbances is urgently needed in Europe, to better observe and respond to the ongoing changes in forest disturbance regimes., (© 2022 The Authors. Global Change Biology published by John Wiley & Sons Ltd.)- Published
- 2023
- Full Text
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26. Asymmetric competition, ontogenetic growth and size inequality drive the difference in productivity between two-strata and one-stratum forest stands.
- Author
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Cordonnier T, Smadi C, Kunstler G, and Courbaud B
- Subjects
- Efficiency, Ecosystem, Forests, Trees growth & development
- Abstract
Size inequality has been considered a key feature of plant population structure with impacts on ecosystem functions. In forest ecosystems, studies examining the relationship between tree size inequality and stand productivity have produced mixed outcomes. These studies found positive, neutral or negative relationships and discussed how this could be influenced by competition for light between trees (e.g. light interception efficiency), but far less attention has been paid to the role played by tree ontogenetic growth. In this article, we present a simple mathematical model that predicts the basal area growth of a two-strata stand as a function of tree basal areas and asymmetric competition. Comparing the growth of this stand to the growth of a spatially homogeneous one-stratum stand and a spatially heterogeneous one-stratum stand, we show that higher growth of the two-strata stand is achieved for concave shape, increasing functions of ontogenetic growth and for low intensities of absolute size-asymmetric competition. We also demonstrate that the difference in growth between the two-strata stand and the one-stratum stands depends on tree size inequality, mean tree basal area and total basal area in the two-strata stand. We finally found that the relationships between tree size inequality and productivity can vary from positive to negative and even non-monotonous. However, we highlight that negative relationships may be more frequent. As a conclusion, our results indicate that ontogenetic growth can have a major impact on the form and the magnitude of the size inequality-productivity relationship., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
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27. Ecological research and environmental management: We need different interfaces based on different knowledge types.
- Author
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Gosselin F, Cordonnier T, Bilger I, Jappiot M, Chauvin C, and Gosselin M
- Subjects
- Conservation of Natural Resources, Research, Ecology, Knowledge
- Abstract
The role of ecological science in environmental management has been discussed by many authors who recognize that there is a persistent gap between ecological science and environmental management. Here we develop theory through different perspectives based on knowledge types, research categories and research-management interface types, which we combine into a common framework. To draw out insights for bridging this gap, we build our case by:We point out the complementarities as well as the specificities and limitations of the different types of ecological research, ecological knowledge and research-management interfaces, which is of major importance for environmental management and research policies., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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28. Protein-polysaccharide complexes for enhanced protein delivery in hyaluronic acid templated calcium carbonate microparticles.
- Author
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Ramalapa B, Crasson O, Vandevenne M, Gibaud A, Garcion E, Cordonnier T, Galleni M, and Boury F
- Abstract
The controlled delivery of proteins within calcium carbonate (CaCO
3 ) particles is currently widely investigated. The success of these carriers is driven by ionic interactions between the encapsulated proteins and the particles. This poses a great limitation on the successful loading of proteins that have no ionic affinity to CaCO3 . In this study, we explored the use of polysaccharide-protein interactions to strongly enhance the encapsulation of proteins in CaCO3 microparticles. Previously, Vandevenne and colleagues inserted a human chitin binding domain (ChBD) that has intrinsic affinity for hyaluronic acid (HA) into a β-lactamase (BlaP). This generated chimeric protein, named BlaPChBD, was shown to be fully bifunctional. In this study we showed that this hybrid protein can associate with HA and be successfully loaded into vaterite CaCO3 microparticles using supercritical CO2 (ScCO2 ) technology aided by the templating effect of HA on CaCO3 . The presence of ChBD inserted into BlaP increased the encapsulation of the protein by 6-fold when complexed with HA. Furthermore, thrombin cleavage sites were engineered on both sides of the inserted ChBD in the chimeric BlaP to achieve release of the protein from the microparticles by protease cleavage. Our results showed that thrombin cleavage increased the release of the protein from the microparticles within 36 hours from <20% to 87%. In conclusion, the presence of ChBD successfully improved the encapsulation yield of the protein while retaining up to 82% of its activity and efficient release of the protein from the microparticles was achieved by protease cleavage.- Published
- 2017
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29. Silica nanofibers as a new drug delivery system: a study of the protein-silica interactions.
- Author
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Henry N, Clouet J, Le Visage C, Weiss P, Gautron E, Renard D, Cordonnier T, Boury F, Humbert B, Terrisse H, Guicheux J, and Le Bideau J
- Abstract
Drug delivery systems are proposed for the in situ controlled delivery of therapeutic molecules in the scope of tissue engineering. We propose herein silica nanofibers as carriers for the loading and release of bioactive proteins. The influence of pH, time and concentration on the amount of adsorbed proteins was studied. The interactions allowing loading were then studied by means of electron microscopy, zeta potential measurements, electron energy loss spectroscopy and attenuated total reflectance Fourier transform infrared analysis. Release profiles were determined and biological activities were enzymatically assessed. The first part of the work was carried out with lysozyme as a model protein, and then bioactive growth factors TGF-β1 and GDF-5 were used because their significance in human adipose stromal cell differentiation towards intervertebral disc nucleopulpocytes was previously assessed. It is demonstrated that protein-silica nanofiber interactions are mainly driven by hydrogen bonds and local electrostatic interactions. The present data thus provide a better understanding of the adsorption phenomenon involved, as well as a method to control protein adsorption and release. It is worth pointing out that the kinetic release of growth factors, up to 28 days, and their biological activity maintenance seem to be compatible with intervertebral disc regenerative medicine.
- Published
- 2017
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30. Long-term tree inventory data from mountain forest plots in France.
- Author
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Fuhr M, Cordonnier T, Courbaud B, Kunstler G, Mermin E, Riond C, and Tardif P
- Subjects
- France, Norway, Picea, Trees growth & development, Forests, Trees classification
- Abstract
We present repeated tree measurement data from 63 permanent plots in mountain forests in France. Plot elevations range from 800 (lower limit of the montane belt) to 1942 m above sea level (subalpine belt). Forests mainly consist of pure or mixed stands dominated by European beech (Fagus sylvatica), Silver fir (Abies alba), and Norway spruce (Picea abies), in association with various broadleaved species at low elevation and with Arolla pine (Pinus cembra) at high elevation. The plot network includes 23 plots in stands that have not been managed for the last 40 years (at least) and 40 plots in plots managed according to an uneven-aged system with single-tree or small-group selection cutting. Plot sizes range from 0.2 to 1.9 ha. Plots were installed from 1994 to 2004 and remeasured two to five times during the 1994-2015 period. During the first census (installation), living trees more than 7.5 cm in dbh were identified, their diameter at breast height (dbh) was measured and their social status (strata) noted. Trees were spatially located, either with x, y, and z coordinates (40 plots) or within 0.25-ha square subplots (23 plots). In addition, in a subset of plots (58 plots), tree heights and tree crown dimensions were measured on a subset of trees and dead standing trees and stumps were included in the census. Remeasurements after installation include live tree diameters (including recruited trees), tree status (living, damaged, dead, stump), and for a subset of trees, height. At the time of establishment of the plots, plot densities range from 181 to 1328 stems/ha and plot basal areas range from 13.6 to 81.3 m
2 /ha., (© 2017 by the Ecological Society of America.)- Published
- 2017
- Full Text
- View/download PDF
31. Protein encapsulation and release from PEO-b-polyphosphoester templated calcium carbonate particles.
- Author
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Ergul Yilmaz Z, Cordonnier T, Debuigne A, Calvignac B, Jerome C, and Boury F
- Subjects
- Chemical Precipitation, Chemistry, Pharmaceutical methods, Drug Delivery Systems, Drug Liberation, Microscopy, Confocal, Microscopy, Electron, Scanning, Muramidase chemistry, Particle Size, Polymers chemistry, Proteins administration & dosage, Proteins chemistry, Calcium Carbonate chemistry, Drug Carriers chemistry, Muramidase administration & dosage, Polyethylene Glycols chemistry
- Abstract
Calcium carbonate particles are promising candidates as proteins carriers for their controlled delivery in the body. The present paper aims at investigating the protein encapsulation by in situ precipitation of calcium carbonate particles prepared by a process based on supercritical CO
2 and using a new type of degradable well-defined double hydrophilic block copolymers composed of poly(ethylene oxide) and polyphosphoester blocks acting as templating agent for the calcium carbonate. For this study, lysozyme was chosen as a model for therapeutic protein for its availability and ease of detection. It was found that by this green process, loading into the CaCO3 microparticles with a diameter about 2μm can be obtained as determined by scanning electron microscopy. A protein loading up to 6.5% active lysozyme was measured by a specific bioassay (Micrococcus lysodeikticus). By encapsulating fluorescent-labelled lysozyme (lysozyme-FITC), the confocal microscopy images confirmed its encapsulation and suggested a core-shell distribution of lysozyme into CaCO3 , leading to a release profile reaching a steady state at 59% of release after 90min., (Copyright © 2016. Published by Elsevier B.V.)- Published
- 2016
- Full Text
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32. Tree Size Inequality Reduces Forest Productivity: An Analysis Combining Inventory Data for Ten European Species and a Light Competition Model.
- Author
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Bourdier T, Cordonnier T, Kunstler G, Piedallu C, Lagarrigues G, and Courbaud B
- Subjects
- Computer Simulation, Europe, Light, Species Specificity, Forests, Models, Biological, Trees anatomy & histology, Trees radiation effects
- Abstract
Plant structural diversity is usually considered as beneficial for ecosystem functioning. For instance, numerous studies have reported positive species diversity-productivity relationships in plant communities. However, other aspects of structural diversity such as individual size inequality have been far less investigated. In forests, tree size inequality impacts directly tree growth and asymmetric competition, but consequences on forest productivity are still indeterminate. In addition, the effect of tree size inequality on productivity is likely to vary with species shade-tolerance, a key ecological characteristic controlling asymmetric competition and light resource acquisition. Using plot data from the French National Geographic Agency, we studied the response of stand productivity to size inequality for ten forest species differing in shade tolerance. We fitted a basal area stand production model that included abiotic factors, stand density, stand development stage and a tree size inequality index. Then, using a forest dynamics model we explored whether mechanisms of light interception and light use efficiency could explain the tree size inequality effect observed for three of the ten species studied. Size inequality negatively affected basal area increment for seven out of the ten species investigated. However, this effect was not related to the shade tolerance of these species. According to the model simulations, the negative tree size inequality effect could result both from reduced total stand light interception and reduced light use efficiency. Our results demonstrate that negative relationships between size inequality and productivity may be the rule in tree populations. The lack of effect of shade tolerance indicates compensatory mechanisms between effect on light availability and response to light availability. Such a pattern deserves further investigations for mixed forests where complementarity effects between species are involved. When studying the effect of structural diversity on ecosystem productivity, tree size inequality is a major facet that should be taken into account.
- Published
- 2016
- Full Text
- View/download PDF
33. Reconciling Environment and Production in Managed Ecosystems: Is Ecological Intensification a Solution?
- Author
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Cordonnier T and Peyron JL
- Published
- 2015
- Full Text
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34. Reconciling Biodiversity Conservation and Timber Production in Mixed Uneven-Aged Mountain Forests: Identification of Ecological Intensification Pathways.
- Author
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Lafond V, Cordonnier T, and Courbaud B
- Subjects
- Computer Simulation, Forestry trends, Models, Theoretical, Trees, Biodiversity, Conservation of Natural Resources, Forestry methods, Forests
- Abstract
Mixed uneven-aged forests are considered favorable to the provision of multiple ecosystem services and to the conciliation of timber production and biodiversity conservation. However, some forest managers now plan to increase the intensity of thinning and harvesting operations in these forests. Retention measures or gap creation are considered to compensate potential negative impacts on biodiversity. Our objectives were to assess the effect of these management practices on timber production and biodiversity conservation and identify potential compensating effects between these practices, using the concept of ecological intensification as a framework. We performed a simulation study coupling Samsara2, a simulation model designed for spruce-fir uneven-aged mountain forests, an uneven-aged silviculture algorithm, and biodiversity models. We analyzed the effect of parameters related to uneven-aged management practices on timber production, biodiversity, and sustainability indicators. Our study confirmed that the indicators responded differently to management practices, leading to trade-offs situations. Increasing management intensity had negative impacts on several biodiversity indicators, which could be partly compensated by the positive effect of retention measures targeting large trees, non-dominant species, and deadwood. The impact of gap creation was more mitigated, with a positive effect on the diversity of tree sizes and deadwood but a negative impact on the spruce-fir mixing balance and on the diversity of the understory layer. Through the analysis of compensating effects, we finally revealed the existence of possible ecological intensification pathways, i.e., the possibility to increase management intensity while maintaining biodiversity through the promotion of nature-based management principles (gap creation and retention measures).
- Published
- 2015
- Full Text
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35. Using the Viability Theory to Assess the Flexibility of Forest Managers Under Ecological Intensification.
- Author
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Mathias JD, Bonté B, Cordonnier T, and de Morogues F
- Subjects
- Abies physiology, Biodiversity, Conservation of Natural Resources, France, Humans, Models, Theoretical, Forestry methods, Forests, Wood
- Abstract
Greater demand for wood material has converged with greater demand for biodiversity conservation to make balancing forest ecosystem services a key societal issue. Forest managers, owners, or policymakers need new approaches and methods to evaluate their ability to adapt to this dual objective. We analyze the ability of forest owners to define sustainable forest management options based on viability theory and a new flexibility index. This new indicator gauges the adaptive capacity of forest owners based on the number of sustainable actions available to them at a given time. Here we study a public forest owner who regulates harvest intensity and frequency in order to meet demand for timber wood at forest scale and to meet a biodiversity recommendation via a minimum permanently maintained volume of deadwood per hectare at stand scale. Dynamical systems theory was used to model uneven-aged forest dynamics-including deadwood dynamics-and the dynamics of timber wood demand and tree removals. Uneven-aged silver fir forest management in the "Quatre Montagnes region" (Vercors, France) is used as an illustrative example. The results explain situations where a joint increase in wood production and deadwood retention does not reduce the flexibility index more than increasing either one dimension alone, thus opening up ecological intensification options. To conclude, we discuss the value of the new flexibility index for addressing environmental management and ecological intensification issues.
- Published
- 2015
- Full Text
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36. Sustained release of TGF-β1 from biodegradable microparticles prepared by a new green process in CO2 medium.
- Author
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Swed A, Cordonnier T, Dénarnaud A, Boyer C, Guicheux J, Weiss P, and Boury F
- Subjects
- Animals, Cell Line, Cell Survival drug effects, Delayed-Action Preparations administration & dosage, Delayed-Action Preparations chemistry, Drug Compounding, Drug Liberation, Fibroblasts drug effects, Green Chemistry Technology, Humans, Mice, Knockout, Polylactic Acid-Polyglycolic Acid Copolymer, Transforming Growth Factor beta1 administration & dosage, Carbon Dioxide chemistry, Lactic Acid chemistry, Polyglycolic Acid chemistry, Transforming Growth Factor beta1 chemistry
- Abstract
The aim of this work was to encapsulate transforming growth factor β1 (TGF-β1) into PLGA microparticles for regenerative medicine applications. TGF-β1 was firstly precipitated to ensure its stability during subsequent encapsulation within microparticles. A novel emulsification/extraction process in CO2 medium under mild conditions of pressure and temperature was used to encapsulate the protein. Interestingly, non-volatile injectable solvents, isosorbide dimethyl ether (DMI) and glycofurol (GF), were employed to precipitate the protein and to dissolve the polymer. Good encapsulation efficiency was obtained with preserved bioactivity of the protein. The microparticles were characterized in terms of size and zeta potential. In addition, the morphology and surface properties were determined using scanning electron microscopy (SEM) and atomic force microscopy (AFM) respectively. In vitro release study of the protein from microparticles was presented to assess the capacity of these systems to control the protein release. Moreover, cytotoxicity study was performed and showed an excellent cytocompatibility of the obtained microparticles. Thus, we described an effective and original process for TGF-β1 encapsulation into PLGA microparticles. The obtained polymeric carriers could be used in many biomedical applications and were more specifically developed for cartilage regeneration., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
37. Modelling and predicting the spatial distribution of tree root density in heterogeneous forest ecosystems.
- Author
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Mao Z, Saint-André L, Bourrier F, Stokes A, and Cordonnier T
- Subjects
- Plant Roots anatomy & histology, Reproducibility of Results, Soil, Forests, Models, Biological, Plant Roots physiology, Trees physiology
- Abstract
Background and Aims: In mountain ecosystems, predicting root density in three dimensions (3-D) is highly challenging due to the spatial heterogeneity of forest communities. This study presents a simple and semi-mechanistic model, named ChaMRoots, that predicts root interception density (RID, number of roots m(-2)). ChaMRoots hypothesizes that RID at a given point is affected by the presence of roots from surrounding trees forming a polygon shape., Methods: The model comprises three sub-models for predicting: (1) the spatial heterogeneity - RID of the finest roots in the top soil layer as a function of tree basal area at breast height, and the distance between the tree and a given point; (2) the diameter spectrum - the distribution of RID as a function of root diameter up to 50 mm thick; and (3) the vertical profile - the distribution of RID as a function of soil depth. The RID data used for fitting in the model were measured in two uneven-aged mountain forest ecosystems in the French Alps. These sites differ in tree density and species composition., Key Results: In general, the validation of each sub-model indicated that all sub-models of ChaMRoots had good fits. The model achieved a highly satisfactory compromise between the number of aerial input parameters and the fit to the observed data., Conclusions: The semi-mechanistic ChaMRoots model focuses on the spatial distribution of root density at the tree cluster scale, in contrast to the majority of published root models, which function at the level of the individual. Based on easy-to-measure characteristics, simple forest inventory protocols and three sub-models, it achieves a good compromise between the complexity of the case study area and that of the global model structure. ChaMRoots can be easily coupled with spatially explicit individual-based forest dynamics models and thus provides a highly transferable approach for modelling 3-D root spatial distribution in complex forest ecosystems., (© The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2015
- Full Text
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38. Combination AZD5363 with Enzalutamide Significantly Delays Enzalutamide-resistant Prostate Cancer in Preclinical Models.
- Author
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Toren P, Kim S, Cordonnier T, Crafter C, Davies BR, Fazli L, Gleave ME, and Zoubeidi A
- Subjects
- Antineoplastic Combined Chemotherapy Protocols, Apoptosis drug effects, Benzamides, Cell Line, Tumor, Humans, Male, Nitriles, Phenylthiohydantoin pharmacology, Prostate cytology, Prostatic Neoplasms, Castration-Resistant metabolism, Proto-Oncogene Proteins c-akt metabolism, Receptors, Androgen metabolism, Signal Transduction drug effects, Treatment Outcome, Xenograft Model Antitumor Assays methods, Cell Proliferation drug effects, Drug Resistance, Neoplasm, Phenylthiohydantoin analogs & derivatives, Prostate drug effects, Prostatic Neoplasms, Castration-Resistant drug therapy, Pyrimidines pharmacology, Pyrroles pharmacology
- Abstract
Unlabelled: The phosphatidylinositol-4,5-bisphosphate 3-kinase/Akt (PI3K/Akt) pathway is a key pathway activated in castrate-resistant prostate cancer (CRPC). This preclinical study evaluates targeting of Akt with AZD5363 alone and in combination with enzalutamide (ENZ) to prevent and delay resistance. Our results demonstrate AZD5363 has significant proapoptotic, antiproliferative activity as monotherapy in ENZ-resistant cell lines in vitro and significantly decreased tumour growth in ENZ-resistant xenograft. The combination of AZD5363 and ENZ showed synergistic decreases in cell proliferation and induced cell-cycle arrest and apoptosis in prostate cancer cell lines LNCaP and C4-2. Notably, the combination of AZD5363 and ENZ resulted in an impressive regression of castrate-resistant LNCaP xenograft tumours without any recurrence demonstrated, whereas progression occurred with both monotherapies. Serum prostate-specific antigen (PSA) levels were also continuously suppressed, and nadir PSA levels were lower in the combination arm compared to ENZ alone. Combination AZD5363 and ENZ at time of castration similarly resulted in significant regression of tumours, with greater relative suppression of PSA compared to when administered to castrate-resistant xenografts. In summary, combination AZD5363 and ENZ significantly delays the development of ENZ resistance in preclinical models through synergistic increases in apoptosis and cell cycle arrest. Our results also suggest greater efficacy may be seen with earlier combination treatment. This study provides preclinical data to support evaluation of combination targeting of the PI3K/Akt pathway and the androgen-receptor axis in the clinic using AZD5363 and ENZ, respectively., Patient Summary: Targeting of the Akt and androgen receptor pathways with AZD5363 and enzalutamide, respectively, significantly delayed the development of enzalutamide-resistant prostate cancer through increased apoptosis and cell cycle arrest. This preclinical synergy provides a strong rationale for clinical evaluation of this combination., (Copyright © 2014 European Association of Urology. Published by Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
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39. Inhibition of the HER2-YB1-AR axis with Lapatinib synergistically enhances Enzalutamide anti-tumor efficacy in castration resistant prostate cancer.
- Author
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Shiota M, Bishop JL, Takeuchi A, Nip KM, Cordonnier T, Beraldi E, Kuruma H, Gleave ME, and Zoubeidi A
- Subjects
- Adenocarcinoma pathology, Animals, Apoptosis drug effects, Benzamides, Cell Division drug effects, Cell Line, Tumor, Drug Resistance, Neoplasm, Drug Synergism, ErbB Receptors antagonists & inhibitors, Humans, Lapatinib, Male, Mice, Mice, Nude, Nitriles, Orchiectomy, Phenylthiohydantoin pharmacology, Prostatic Neoplasms pathology, Protein Kinase Inhibitors pharmacology, Protein Processing, Post-Translational drug effects, Protein Transport drug effects, Proto-Oncogene Proteins c-akt metabolism, Receptors, Androgen drug effects, Signal Transduction drug effects, Adenocarcinoma drug therapy, Androgen Receptor Antagonists pharmacology, Neoplasm Proteins antagonists & inhibitors, Phenylthiohydantoin analogs & derivatives, Prostatic Neoplasms drug therapy, Quinazolines pharmacology, Receptor, ErbB-2 antagonists & inhibitors, Y-Box-Binding Protein 1 antagonists & inhibitors
- Abstract
Incurable castration-resistant prostate cancer (CRPC) is driven by androgen receptor (AR) activation. Potent therapies that prevent AR signaling, such as Enzalutamide (ENZ), are mainstay treatments for CRPC; however patients eventually progress with ENZ resistant (ENZR) disease. In this study, we investigated one mechanism of ENZ resistance, and tried to improve therapeutic efficiency of ENZ. We found HER2 expression is increased in ENZR tumors and cell lines, and is induced by ENZ treatment of LNCaP cells. ENZ-induced HER2 overexpression was dependent on AKT-YB1 activation and modulated AR activity. HER2 dependent AR activation in LNCaP and ENZR cells was effectively blocked by treatment with the EGFR/HER2 inhibitor Lapatinib, which reduced cell viability and increased apoptosis. Despite efficacy in vitro, in vivo monotherapy with Lapatinib did not prevent ENZR tumor growth. However, combination treatment of Lapatinib with ENZ most effectively induced cell death in LNCaP cells in vitro and was more effective than ENZ alone in preventing tumor growth in an in vivo model of CRPC. These results suggest that while HER2 overexpression and subsequent AR activation is a targetable mechanism of resistance to ENZ, therapy using Lapatinib is only a rational therapeutic approach when used in combination with ENZ in CRPC.
- Published
- 2015
- Full Text
- View/download PDF
40. Hsp27 regulates EGF/β-catenin mediated epithelial to mesenchymal transition in prostate cancer.
- Author
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Cordonnier T, Bishop JL, Shiota M, Nip KM, Thaper D, Vahid S, Heroux D, Gleave M, and Zoubeidi A
- Subjects
- Active Transport, Cell Nucleus, Cell Line, Tumor, Cell Movement, Glycogen Synthase Kinase 3 metabolism, Glycogen Synthase Kinase 3 beta, Heat-Shock Proteins, Humans, Male, Matrix Metalloproteinase 9 metabolism, Molecular Chaperones, Neoplasm Invasiveness, Proto-Oncogene Proteins c-akt metabolism, Snail Family Transcription Factors, Transcription Factors genetics, Epidermal Growth Factor physiology, Epithelial-Mesenchymal Transition, HSP27 Heat-Shock Proteins physiology, Prostatic Neoplasms pathology, beta Catenin physiology
- Abstract
Increased expression of the molecular chaperone Hsp27 is associated with the progression of prostate cancer (PCa) to castration-resistant disease, which is lethal due to metastatic spread of the prostate tumor. Metastasis requires epithelial to mesenchymal transition (EMT), which endows cancer cells with the ability to disseminate from the primary tumor and colonize new tissue sites. A wide variety of secreted factors promote EMT, and while overexpression and constitutive activation of epidermal growth factor (EGF) signaling is associated with poor prognosis of PCa, a precise role of EGF in PCa progression to metastasis remains unclear. Here, we show that Hsp27 is required for EGF-induced cell migration, invasion and MMPs activity as well as the expression of EMT markers including Fibronectin, Vimentin and Slug with concomitant decrease of E-cadherin. Mechanistically, we found that Hsp27 is required for EGF-induced AKT and GSK3β phosphorylation and β-catenin nuclear translocation. Moreover, silencing Hsp27 decreases EGF dependent phosphorylation of β-catenin on tyrosine 142 and 654, enhances β-catenin ubiquitination and degradation, prevents β-catenin nuclear translocation and binding to the Slug promoter. These data suggest that Hsp27 is required for EGF-mediated EMT via modulation of the β-catenin/Slug signaling pathway. Together, our findings underscore the importance of Hsp27 in EGF induced EMT in PCa and highlight the use of Hsp27 knockdown as a useful strategy for patients with advanced disease., (© 2014 UICC.)
- Published
- 2015
- Full Text
- View/download PDF
41. Preparation of polymeric particles in CO 2 medium using non-toxic solvents: discussions on the mechanism of particle formation.
- Author
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Tran MK, Swed A, Calvignac B, Dang KN, Hassani LN, Cordonnier T, and Boury F
- Abstract
The aim of this work was to develop a novel formulation method, termed modified-PGSS (modified-Particle from Gas Saturated Solution), for the encapsulation of protein into polymeric microparticles in CO
2 medium. In this study, isosorbide dimethyl ether (DMI), a non-toxic water-miscible solvent, was used for the formulation and lysozyme was chosen as a model protein for encapsulation into PLGA microparticles. First, the mechanism of particle formation has been extensively studied and was discussed in detail. Phase behavior was investigated by measuring the solubility of CO2 in DMI and volumetric expansion of DMI saturated in CO2 . Here, we demonstrate the consistency of the experimental values with the data obtained from the mathematical (such as the neural network) and thermodynamic (such as the Peng-Robinson equation of state) models. These models were built to develop predictive tools in the chosen experimental space for microparticle formulation. Furthermore, these microparticles were characterized in terms of size and zeta potential. The morphology and protein distribution within PLGA microparticles were determined using scanning electron microscopy and confocal microscopy, respectively. High encapsulation efficiency (65%) was obtained as confirmed by lysozyme quantification using a specific bioassay (M. lysodeikticus). Moreover, the in vitro protein release profile from loaded microparticles was presented. In this study, we report an innovative and green process for lysozyme encapsulation into PLGA microparticles. Thus, this process could be applied to the encapsulation of therapeutic proteins requiring protection and controlled release such as growth factors for regenerative medicine.- Published
- 2015
- Full Text
- View/download PDF
42. Osteoblastic differentiation and potent osteogenicity of three-dimensional hBMSC-BCP particle constructs.
- Author
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Cordonnier T, Langonné A, Corre P, Renaud A, Sensebé L, Rosset P, Layrolle P, and Sohier J
- Subjects
- Aged, Aged, 80 and over, Animals, Cell Differentiation genetics, Cell Proliferation, Female, Humans, Implants, Experimental, Male, Mesenchymal Stem Cells drug effects, Mesenchymal Stem Cells metabolism, Mice, Mice, Nude, Microspheres, Middle Aged, Osteoblasts drug effects, Osteoblasts metabolism, Osteogenesis genetics, RNA, Messenger genetics, RNA, Messenger metabolism, Real-Time Polymerase Chain Reaction, Cell Differentiation drug effects, Hydroxyapatites pharmacology, Mesenchymal Stem Cells cytology, Osteoblasts cytology, Osteogenesis drug effects, Tissue Scaffolds chemistry
- Abstract
Bone tissue engineering usually consists of associating osteoprogenitor cells and macroporous scaffolds. This study investigated the in vitro osteoblastic differentiation and resulting in vivo bone formation induced by a different approach that uses particles as substrate for human bone marrow stromal cells (hBMSCs), in order to provide cells with a higher degree of freedom and allow them to synthesize a three-dimensional (3D) environment. Biphasic calcium phosphate (BCP) particles (35 mg, ~175 µm in diameter) were therefore associated with 4 × 10(5) hBMSCs. To discriminate the roles of BCP properties and cell-synthesized 3D environments, inert glass beads (GBs) of similar size were used under the same conditions. In both cases, high cell proliferation and extensive extracellular matrix (ECM) production resulted in the rapid formation of thick cell-synthesized 3D constructs. In vitro, spontaneous osteoblastic differentiation was observed in the 3D constructs at the mRNA and protein levels by monitoring the expression of Runx2, BMP2, ColI, BSP and OCN. The hBMSC-BCP particle constructs implanted in the subcutis of nude mice induced abundant ectopic bone formation after 8 weeks (~35%, n = 5/5). In comparison, only fibrous tissue without bone was observed in the implanted hBMSC-GB constructs (n = 0/5). Furthermore, little bone formation (~3%, n = 5/5) was found in hBMSC-macroporous BCP discs (diameter 8 × 3 mm). This study underlines the lack of correspondence between bone formation and in vitro differentiation assays. Furthermore, these results highlight the importance of using BCP as well as a 3D environment for achieving high bone yield of interest for bone engineering., (Copyright © 2012 John Wiley & Sons, Ltd.)
- Published
- 2014
- Full Text
- View/download PDF
43. Determining a clinically relevant strategy for bone tissue engineering: an "all-in-one" study in nude mice.
- Author
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Corre P, Merceron C, Vignes C, Sourice S, Masson M, Durand N, Espitalier F, Pilet P, Cordonnier T, Mercier J, Remy S, Anegon I, Weiss P, and Guicheux J
- Subjects
- Animals, Bone Marrow Transplantation, Bone and Bones, Cell Tracking, Female, Gene Expression, Genes, Reporter, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Hydroxyapatites metabolism, Male, Mesenchymal Stem Cell Transplantation, Mesenchymal Stem Cells cytology, Mice, Mice, Nude, Rats, Skin, Tissue Scaffolds, Transplantation, Heterologous, Bone Marrow physiology, Bone Regeneration physiology, Mesenchymal Stem Cells physiology, Osteogenesis physiology, Tissue Engineering methods
- Abstract
Purpose: Autologous bone grafting (BG) remains the standard reconstruction strategy for large craniofacial defects. Calcium phosphate (CaP) biomaterials, such as biphasic calcium phosphate (BCP), do not yield consistent results when used alone and must then be combined with cells through bone tissue engineering (BTE). In this context, total bone marrow (TBM) and bone marrow-derived mesenchymal stem cells (MSC) are the primary sources of cellular material used with biomaterials. However, several other BTE strategies exist, including the use of growth factors, various scaffolds, and MSC isolated from different tissues. Thus, clinicians might be unsure as to which method offers patients the most benefit. For this reason, the aim of this study was to compare eight clinically relevant BTE methods in an "all-in-one" study., Methods: We used a transgenic rat strain expressing green fluorescent protein (GFP), from which BG, TBM, and MSC were harvested. Progenitor cells were then mixed with CaP materials and implanted subcutaneously into nude mice. After eight weeks, bone formation was evaluated by histology and scanning electron microscopy, and GFP-expressing cells were tracked with photon fluorescence microscopy., Results/conclusions: Bone formation was observed in only four groups. These included CaP materials mixed with BG or TBM, in which abundant de novo bone was formed, and BCP mixed with committed cells grown in two- and three-dimensions, which yielded limited bone formation. Fluorescence microscopy revealed that only the TBM and BG groups were positive for GFP expressing-cells, suggesting that these donor cells were still present in the host and contributed to the formation of bone. Since the TBM-based procedure does not require bone harvest or cell culture techniques, but provides abundant de novo bone formation, we recommend consideration of this strategy for clinical applications.
- Published
- 2013
- Full Text
- View/download PDF
44. Hsp27 regulates epithelial mesenchymal transition, metastasis, and circulating tumor cells in prostate cancer.
- Author
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Shiota M, Bishop JL, Nip KM, Zardan A, Takeuchi A, Cordonnier T, Beraldi E, Bazov J, Fazli L, Chi K, Gleave M, and Zoubeidi A
- Subjects
- Animals, Cell Line, Tumor, Humans, Interleukin-6 pharmacology, Male, Mice, Neoplasm Metastasis, Promoter Regions, Genetic, STAT3 Transcription Factor metabolism, Twist-Related Protein 1 genetics, Epithelial-Mesenchymal Transition, HSP27 Heat-Shock Proteins physiology, Neoplastic Cells, Circulating, Prostatic Neoplasms pathology
- Abstract
Defining the mechanisms underlying metastatic progression of prostate cancer may lead to insights into how to decrease morbidity and mortality in this disease. An important determinant of metastasis is epithelial-to-mesenchymal transition (EMT), and the mechanisms that control the process of EMT in cancer cells are still emerging. Here, we report that the molecular chaperone Hsp27 (HSPB1) drives EMT in prostate cancer, whereas its attenuation reverses EMT and decreases cell migration, invasion, and matrix metalloproteinase activity. Mechanistically, silencing Hsp27 decreased IL-6-dependent STAT3 phosphorylation, nuclear translocation, and STAT3 binding to the Twist promoter, suggesting that Hsp27 is required for IL-6-mediated EMT via modulation of STAT3/Twist signaling. We observed a correlation between Hsp27 and Twist in patients with prostate cancer, with Hsp27 and Twist expression each elevated in high-grade prostate cancer tumors. Hsp27 inhibition by OGX-427, an antisense therapy currently in phase II trials, reduced tumor metastasis in a murine model of prostate cancer. More importantly, OGX-427 treatment decreased the number of circulating tumor cells in patients with metastatic castration-resistant prostate cancer in a phase I clinical trial. Overall, this study defines Hsp27 as a critical regulator of IL-6-dependent and IL-6-independent EMT, validating this chaperone as a therapeutic target to treat metastatic prostate cancer., (©2013 AACR.)
- Published
- 2013
- Full Text
- View/download PDF
45. Consistent osteoblastic differentiation of human mesenchymal stem cells with bone morphogenetic protein 4 and low serum.
- Author
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Cordonnier T, Langonné A, Sohier J, Layrolle P, Rosset P, Sensébé L, and Deschaseaux F
- Subjects
- Adult, Aged, Aged, 80 and over, Alkaline Phosphatase metabolism, Animals, Cell Differentiation genetics, Cell Proliferation drug effects, Ceramics pharmacology, Flow Cytometry, Gene Expression Profiling, Gene Expression Regulation drug effects, Humans, Mesenchymal Stem Cells enzymology, Mice, Middle Aged, Osteoblasts metabolism, Osteogenesis drug effects, Osteogenesis genetics, Tissue Scaffolds chemistry, Bone Morphogenetic Protein 4 pharmacology, Cell Differentiation drug effects, Mesenchymal Stem Cells cytology, Mesenchymal Stem Cells drug effects, Osteoblasts cytology, Osteoblasts drug effects, Serum metabolism
- Abstract
Providing fully mature and functional osteoblasts is challenging for bone tissue engineering and regenerative medicine. Such cells could be obtained from multipotent bone marrow mesenchymal stem cells (MSCs) after induction by different osteogenic factors. However, there are some discrepancies in results, notably due to the use of sera and to the type of osteogenic factor. In this study, we compared the osteogenic differentiation of bone marrow MSCs induced by dexamethasone (Dex) or bone morphogenetic proteins (BMPs) by assessing phenotypes in vitro and functional osteoblasts in vivo. Reducing the content of fetal calf serum from 10% to 2% significantly increased the mineral deposition and expression of osteoblastic markers during osteogenesis. In comparison to Dex condition, the addition of BMP4 greatly improved the differentiation of MSCs into fully mature osteoblasts as seen by high expression of Osterix. These results were confirmed in different supportive matrixes, plastic flasks, or biphasic calcium phosphate biomaterials. In contrast to Dex-derived osteoblasts, BMP4-derived osteoblasts from MSCs were significantly able to produce new bone in subcutis of nude mice in accordance with in vitro results. In conclusion, we describe a convenient ex vivo method to produce consistently mature functional osteoblasts from human MSCs with use of BMP4 and low serum.
- Published
- 2011
- Full Text
- View/download PDF
46. Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis.
- Author
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Leung W, Shaffer CD, Cordonnier T, Wong J, Itano MS, Slawson Tempel EE, Kellmann E, Desruisseau DM, Cain C, Carrasquillo R, Chusak TM, Falkowska K, Grim KD, Guan R, Honeybourne J, Khan S, Lo L, McGaha R, Plunkett J, Richner JM, Richt R, Sabin L, Shah A, Sharma A, Singhal S, Song F, Swope C, Wilen CB, Buhler J, Mardis ER, and Elgin SC
- Subjects
- Animals, Chromosome Mapping, Drosophila classification, Drosophila Proteins genetics, Drosophila melanogaster genetics, Euchromatin genetics, Genes, Insect genetics, Heterochromatin genetics, INDEL Mutation genetics, Open Reading Frames genetics, Species Specificity, Synteny, Tandem Repeat Sequences genetics, Chromosomes, Insect genetics, Drosophila genetics, Evolution, Molecular, Genome, Insect genetics
- Abstract
The distal arm of the fourth ("dot") chromosome of Drosophila melanogaster is unusual in that it exhibits an amalgamation of heterochromatic properties (e.g., dense packaging, late replication) and euchromatic properties (e.g., gene density similar to euchromatic domains, replication during polytenization). To examine the evolution of this unusual domain, we undertook a comparative study by generating high-quality sequence data and manually curating gene models for the dot chromosome of D. virilis (Tucson strain 15010-1051.88). Our analysis shows that the dot chromosomes of D. melanogaster and D. virilis have higher repeat density, larger gene size, lower codon bias, and a higher rate of gene rearrangement compared to a reference euchromatic domain. Analysis of eight "wanderer" genes (present in a euchromatic chromosome arm in one species and on the dot chromosome in the other) shows that their characteristics are similar to other genes in the same domain, which suggests that these characteristics are features of the domain and are not required for these genes to function. Comparison of this strain of D. virilis with the strain sequenced by the Drosophila 12 Genomes Consortium (Tucson strain 15010-1051.87) indicates that most genes on the dot are under weak purifying selection. Collectively, despite the heterochromatin-like properties of this domain, genes on the dot evolve to maintain function while being responsive to changes in their local environment.
- Published
- 2010
- Full Text
- View/download PDF
47. The effect of colonization and competition processes on the relation between disturbance and diversity in plant communities.
- Author
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Cordonnier T, Courbaud B, and Franc A
- Subjects
- Ecosystem, Founder Effect, Population Dynamics, Species Specificity, Biodiversity, Models, Biological, Plant Development
- Abstract
Many theoretical and field studies have emphasized the impact of disturbance in the dynamics and diversity of sessile organism communities. This view is best reflected by the Intermediate Disturbance Hypothesis (IDH), which states that a maximum of diversity is found in ecosystems or communities experiencing intermediate disturbance regimes or at an intermediate stage of development since the last major disturbance event. Although theoretical models based on competitive interactions tend to validate this hypothesis, a recent meta-analysis of field experiments revealed that the mono-modal relationship between disturbance and diversity might not be a general pattern. In this article, we investigate the relationship between disturbance and diversity through the study of patch models, combining two types of competitive interactions: with or without competitive hierarchy, with two mechanisms influencing colonization: negative frequency dependence in colonization rates and immigration. These combinations led to various disturbance-diversity patterns. In the model without competitive hierarchy (founder effect model), a decreasing relationship appeared to be the rule as mentioned in previous studies. In the model with competitive hierarchy, the IDH pattern was obtained for low frequency dependence and low immigration. Nevertheless, high negative frequency dependence in colonization rates led to a decreasing relationship between disturbance and diversity. In contrast, high immigration led to an increasing relationship. The coexistence window (the range of disturbance intensity allowing coexistence) was the widest for intermediate immigration rates. For random species assemblages, patterns with multiple peaks were also possible. These results highlight the fact that the mono-modal IDH pattern should not be considered a rule. Competition and colonization mechanisms have a profound impact on the relationship between disturbance and diversity.
- Published
- 2006
- Full Text
- View/download PDF
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