1. Measuring copepod naupliar abundance in a subtropical bay using quantitative PCR
- Author
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Jungbluth, Michelle J., Goetze, Erica, and Lenz, Petra H.
- Subjects
Copepoda -- Genetic aspects ,Polymerase chain reaction -- Research ,Copepods -- Genetic aspects ,Biological sciences - Abstract
Copepod nauplii are important in plankton food web dynamics, but limited information is available about their ecology due to methodological challenges. reported here is a new molecular method that was developed, optimized, and tested in laboratory and field samples that uses quantitative PCR (qPCR) to identify and estimate the abundance of nauplii of the planktonic copepod, Parvocalanus crassirostris. The overall approach included collection of bulk zooplankton samples in the field, size fractionation to create artificial cohorts of relatively few developmental stages, obtaining DNA copy number for each size fraction by qPCR amplification of a target gene region, and estimation of the number of animals in each fraction through application of known DNA copy number across developmental stage. Method validation studies found that our qPCR-based approach has comparable accuracy to microscope-based counts of early developmental stages. Naupliar abundance estimates obtained using the two methods on cultured populations were similar; the regression of qPCR estimates on microscope-based counts resulted in a nearly 1:1 ratio (slope = 1.09). The qPCR-based method is superior to traditional identification and quantification methods for nauplii due to its higher taxonomic resolution, sensitive detection over a range of DNA quantities, and relatively high throughput sample processing., Introduction Copepod nauplii are important members of the marine planktonic community and are often the most abundant component of the microzooplankton (Calbet et al. 2001; Lucic et al. 2003; Turner [...]
- Published
- 2013
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