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Nearshore habitats are essential for many marine fish species but are subject to anthropogenic stressors. Assessing the consequences of essential fish habitat degradation on population dynamics and productivity is challenging. We address this by focusing on a metapopulation of the common sole Solea solea, a high-value, exploited flatfish in the Eastern English Channel (EEC). Multidisciplinary data and expert knowledge were compiled to build feasible restoration scenarios for the availability of suitable habitat (measured in habitat surface extent) and chemical quality of juvenile habitats in the highly anthropized Seine estuary, the largest estuary and potentially a sole nursery area of primary interest in the EEC. Scenarios were simulated with a spatially structured life-cycle model to investigate the consequences of local restoration on restricted nursery habitats in the estuary. Restoring surface extent and habitat quality in the Seine estuary dramatically enhances spawning stock biomass (+18%) and fishery catches (+13%) in the EEC. Restoring habitat quality has a greater effect than restoring habitat surface. Because of the low connectivity between subpopulations of sole in the EEC, most of the local restoration benefits remain regional and affect the subpopulation that directly depends on the Seine nursery, with only moderate spread to the entire EEC. Our study emphasizes the utility of spatial simulation models for integrating multidisciplinary knowledge and assessing the consequences of local anthropogenic pressures at wider metapopulation scales. We provide a means of building robust methods to assess the benefits of nearshore habitat restoration for enhancing fish populations and fisheries and integrate habitat value into the sustainable management of exploited species.

The total length-otolith length (TL-OL), total length-otolith width (TL-OWi), total length-otolith weight (TL-OW) and total weight-otolith weight (TW-OW) relationships of seven fishes in the Marmara Sea, Turkey were calculated. Measurements of sagittal otoliths (length, width and weight) and individuals (total length and total weight) from these species (Gaidropsarus biscayensis, Mediterranean bigeye rockling; Arnoglossus kessleri, Scaldback; Solea solea, Common sole; Uranoscopus scaber, Stargazer; Lophius budegassa, Blackbellied angler, Lepidorhombus boscii, The four-spot megrim and Lesueurigobius friesii, Fries's goby) were given. Linear regression analysis (y = bx + a) was used to determine the relationship between each morphometric character and the coefficient of determination (r2) were calculated. Highest determination coefficient were determined for L. budegassa and A. kessleri to TW-OW, for S. solea, and U. scaber to TL-OL, for G. biscayensis and L. boscii to TL-OWi, for L. friesii to TL-OW. The relatively lower determination coefficients were found for G.biscayensis, compared with others. These relationships provide vital information on species identification and size estimation of fish in predator-prey studies, we believe these results will be useful in future studies of stomach contents., Marmara Denizi’nde ki 7 balık türünde balık boyu-otolit boyu (TL-OL), balık boyu-otolit genişliği (TL-OWi), balık boyu-otolit ağırlığı (TL-OW) ve balık ağırlığı-otolit ağırlığı (TW-OW) ilişkileri hesaplanmıştır. Bu türlere ait (Gaidropsarus biscayensis, Uzun Gelincik; Arnoglossus kessleri, Pisi Balığı; Solea solea, Dil Balığı; Uranoscopus scaber, Tiryaki; Lophius budegassa, Fener Balığı; Lepidorhombus boscii, Kancaağız Pisi ve Lesueurigobius friesii, Kaya Balığı) balık ölçümleri (boy ve ağırlık) ve otolit ölçümleri (boy, genişlik ve ağırlık) verilmiştir. Her bir morfolojik karakteristiğin arasındaki ilişkilerin tespitinde Doğrusal regresyon analizi (y = bx + a) kullanılmış ve determinasyon katsayısı (r2) hesaplanmıştır. En yüksek determinasyon katsayısı L. budegassa ve A. kessleri için TW-OW, S. solea, ve U. scaber için TL-OL, G. biscayensis ve L. boscii için TL-OWi, L. friesii için TL-OW ilişkilerinde hesaplanmıştır. Diğer türlerle karşılaştırıldığında, G. biscayensis için oldukça düşük determinasyon katsayıları bulunmuştur. Bu ilişkiler balıkların av-avcı ilişkileri çalışmalarında tür tayini ve av boyu tahmininde önemli bilgiler sunduğundan, gelecekte gerçekleştirilecek mide içeriği çalışmaları açısından katkı sağlayacağını düşünmekteyiz.

Fish fraud is a problematic issue for the industry. For it to be properly addressed will require the use of accurate, rapid, and cost-effective tools. In this work, near infrared reflectance spectroscopy (NIRS) was used to predict nutritional values (protein, lipids, and moisture) as well as to discriminate between sources (farmed vs. wild fish) and conditions (fresh or defrosted fish). Samples of five whitefish species—Alaskan pollock (Gadus chalcogrammu), Atlantic cod (G. morhua), European plaice (Pleuronectes platessa), common sole (Solea solea), and turbot (Psetta maxima)—including farmed, wild, fresh, and frozen ones, were scanned by a low-cost handheld near infrared reflectance spectrometer with a spectral range between 900 and 1700 nm. Several machine learning algorithms were explored for both regression and classification tasks, achieving precisions and coefficients of determination higher than 88% and 0.78, respectively. Principal component analysis (PCA) was used to cluster samples according to classes where good linear discriminations were denoted. Loadings from PCA revealed bands at 1150, 1200, and 1400 nm as the most discriminative spectral regions regarding classification of both source and condition, suggesting the absorbance of OH, CH, CH2, and CH3 groups as the most important ones. This study shows the use of NIRS and both linear and non-linear learners as a suitable strategy to address fish fraud and fish QC.

Larval dispersal and juvenile survival are crucial in determining variation in recruitment, stock size and adult distribution of commercially important fish. This study investigates the dispersal of early-life stages of common sole (Solea solea L.) in the southern North Sea, both empirically and through modeling. Age at different life-history events of juvenile flatfish sampled along the coasts of Belgium, the Netherlands and the United Kingdom in 2013, 2014 and 2016, was determined through the counting of daily growth rings in the otoliths. Juveniles captured between August and October were estimated to be on average 140 days old with an average pelagic larval duration of 34 days. The hatching period was estimated between early April and mid-May followed by arrival and settlement in the nurseries between May and mid-June. Growth rates were higher off the Belgian coast than in the other nursery areas, especially in 2013, possibly due to a post-settlement differentiation. Empirical pelagic larval duration and settlement distributions were compared with the Larvae&Co larval dispersal model, which combines local hydrodynamics in the North Sea with sole larval behavior. Yearly predicted and observed settlement matched partially, but the model estimated a longer pelagic phase. The observations fitted even better with the modelled average (1995-2015) distribution curves. Aberrant results for the small juvenile sole sampled along the UK coast in March 2016, led to the hypothesis of a winter disruption in the deposition of daily growth rings, potentially related to starvation and lower food availability. The similarities between measured and modelled distribution curves cross-validated both types of estimations and accredited daily ageing of juveniles as a useful method to calibrate biophysical models and to understand early-life history of fish, both important tools in support of efficient fisheries management strategies. ispartof: PLOS ONE vol:16 issue:9 ispartof: location:United States status: published

Populations along environmental gradients have the potential to adapt to their own local environments. It is important to understand these adaptations in fisheries stocks to fully inform fisheries management strategies. With this is mind, sea temperatures are an important cue in timing for many marine species, including sole in the North-East Atlantic Ocean. We used spawning data and modelled sea surface temperature (SST) data from sole subpopulations to examine the possibility of local adaptation of their spawning times to rising temperature. Climate window analysis was used, in a linear mixed model using mean spawning week and SST, to investigate statistically significant differences between subpopulations of sole. There was no evidence of local adaptation to changing temperatures for these subpopulations. This suggests that their spawning-time reaction to changing temperatures is currently due to their subpopulation’s mean plasticity. Using climate window analysis and modelled temperature data we have demonstrated a method of examining spawning changes in marine populations along a temperature gradient. Recruitment and spawning success are key elements of fisheries population models which contribute to fisheries management. Further understanding of the influence of temperature on recruitment will help inform future modelling.

Summary The metazoan parasites were investigated of two flatfish the common sole, Solea solea (n:140) and the scaldfish, Arnoglossus laterna (n: 22) in the Sinop coast of Black Sea from June 2015 to June 2017. A total of 15 metazoan parasite species belonging to Digenea (6), Cestoda (3), Acanthocephala (1), Nematoda (4) and Isopoda (1) taxonomic groups were identified. Solea solea was found to be infected by Condylocotyla pilodora, Proctoeces maculatus, Opecoelidae gen. sp., Metadena sp., Stephanostomum sp., Progrillotia sp., Capillaria gracilis, Cucullanus campanae, Solearhynchus rhytidotes and Nerocila orbignyi. Arnoglossus laterna was found to be infected by Lecithochirium musculus and Grillotia erinaceus. Scolex pleuronectis, Hysterothylacium aduncum and Dichelyne minutus were determined in both flatfish. Infection prevalence and mean intensity values were re- corded for each parasite species. Infection values for each parasite species in relation to season and fish size were also determined and compared as comparatively. This study is the first one assessing the metazoan parasites both of S. solea and A. laterna collected from the Turkish coast of Black Sea. While Condylocotyle pilodora and Capillaria gracilis are new parasite records for S. solea, Grillotia erinecaus is new parasite record for A. laterna. Moreover, this paper is the first report on occurrence of Opecoelidae gen. sp., Metadena and Stephanostomum genera in S. solea.

Connectivity between juvenile habitats and adult stocks is important for determining the resilience of local fisheries and the relative contribution of different juvenile habitat areas to adult populations. Otolith chemistry is commonly employed to differentiate between individuals from different juvenile habitat areas; whereby different environmental exposures, mediated by intrinsic physiological processes, produce different trace element concentrations in the biologically inert otolith. This study aims to determine if otolith chemistry can differentiate between juveniles of hybridising con-familials where they are found in the same habitat and to establish if otolith chemistry can effectively re-assign individuals to contiguous coastal juvenile habitat areas of the inner Danish waters (IDW). Sympatric pairs of juvenile European plaice (Pleuronectes platessa) and flounder (Platichthys flesus) caught together in a juvenile beam trawl survey, in areas where the two species hybridise, were used to address the first aim. Juvenile plaice and common sole (Solea solea) caught during the same survey were used to determine if otolith chemistry can correctly re-assign individuals back to contiguous coastal juvenile habitat areas. Laser ablation inductively coupled plasma mass spectroscopy (LA-ICPMS) was used to analyse the trace elements in edge spots of juvenile otoliths and Canonical Analysis of Principal Coordinates was employed to test the reassignment of individuals back to correct species or area. Using a suite of eight trace elements, ∼72% of individual plaice (∼70%) and flounder (∼73%) were correctly identified. Greater than two-thirds (∼67%) of plaice were correctly re-allocated to four juvenile habitat areas and close to four out of five (∼79%) individual sole were correctly re-allocated to three juvenile habitat areas. These results indicate that the hybridising con-familial plaice and flounder of the IDW warrant further attention and could be a valuable model system to assess how intrinsic and extrinsic factors influence elemental incorporation. Furthermore, this study shows otolith chemistry is a valuable tool for tracing marine fish back to juvenile habitat areas, even where they are found along contiguous coastal areas.

The existence of a temperature gradient across latitudes is crucial to explain the patterns presented in the early life-history characteristics of marine fish species over large geographical areas. Hence, the aim of the present work was to analyse the temperature-related pattern in the early life-history events and characteristics of the common sole, Solea solea, along most of its geographical distribution area, focusing on key nursery areas for this species: Venice lagoon (Italy), Mondego estuary (Portugal), Vilaine estuary (France) and Balgzand (Netherlands). Otolith microstructure from metamorphosed age 0 juveniles was used to estimate age, the pelagic larval and metamorphosis stages duration, and the spawning period. A latitudinal cline was found for the main processes of the early life cycle: spawning started in December in the southernmost areas (Mondego estuary and Venice Lagoon) and in February in the Balgzand population. Hatching started earlier in the Venice lagoon, where warmer water temperatures in the winter led to an earlier development. The longest pelagic stage was observed in the French coast populations, which differed significantly from those of the Mediterranean, while metamorphosis lasted longer in the North Sea (Balgzand), when compared with the Portuguese Atlantic coast (Mondego). Populations further north were characterized by higher growth rates, suggesting an adaptation to local conditions. Despite that several abiotic factors play an important role in flatfish early life history, the observed temperature gradient seems to be one of the most important drivers.

Recent important developments in sole aquaculture have increased the availability of the farmed product on the market. The aim of this research was to characterize and compare for the first time in common sole (Solea solea) morphometric parameters, nutrients and sensory traits of cultured and wild specimens. Farmed sole, while maintaining the characteristics of a lean fish species (2% of lipid content), displayed a EPA+DHA fillet content more than twice as high as its wild counterpart. Sensory traits of “potato”, “boiled fish”, sweet, firmness, astringency, chewiness, were correlated to farmed origin while whiteness, briny, “octopus”, “crab”, salty, acid, bitter, umami, intensity and juiciness were linked to wild origin. Intensive farming conditions improved the nutritional value of common sole in terms of lipid content and fatty acid profile and led to sweeter sensory traits particularly associated with a terrestrial vegetable perception.

Sole fed commercial pellets develop a nutritional anaemia. This study assessed the impact of dietary B12 and taurine on the haematocrit (Hct) and haemoglobin (Hb) level and mineral absorption in anaemic sole. Anaemic sole was fed one of four diets. Diets were equal regarding mineral, amino acid and macronutrient composition and formulated, according to a two by two factorial design: two B12 (0.34 vs. 1.9 mg kg dm⁻¹) and two taurine levels (3.5 vs. 7.6 mg kg dm⁻¹). The feeding level was restricted and equal for all diets. Hct and Hb levels in anaemic sole are influenced by dietary B12. A “high” level of B12 increases the Hct and Hb level. An increasing level of taurine suppresses the stimulating effect of the “high” level of B12. The applied B12 and taurine levels were unable to completely alleviate the anaemia in sole. Nevertheless, sole needs high dietary levels of B12 to alleviate anaemia. The impact of B12 and taurine on Hb and Hct was not related to a change in the absorption of iron. A “high” level of B12 positively affected the absorption of chromium and a high level of taurine negatively affected the absorption of cobalt in sole.

Electrical pulse trawling is an alternative to conventional beam trawling for common sole (Solea solea), with the potential for higher revenues and less impact on the marine ecosystem. Concerns exist, however, that benthic invertebrates might be seriously affected by pulse fishing. Even if direct injuries and mortality were limited, changes in behaviour might compromise their survival, with potentially large impacts on food webs. Here, we investigate effects of electrical pulses on locomotion behaviour and 14-days survival of six invertebrate species from four phyla that may encounter pulse fishing gears. Electrical stimulation consisted of a Pulsed Bipolar Current at 200 V m–1, 30 Hz, 0.33 ms pulse width, and 3 s duration. We quantified species-specific behaviours before, during, and after electrical stimulation and compared these to a non-exposed control group. Responses during stimulation varied from no visible effect (echinoderms) to squirming (sea mouse) and retractions (whelk and crustaceans). Within 30 s after stimulation, all animals resumed normal behavioural patterns, without signs of lasting immobilisation. Starfish, serpent star, whelk and sea mouse showed no change in movement patterns after stimulation, whereas flying crab and hermit crab showed significant changes in activity that were indicative of increased shelter behaviour. For none of the species, survival at 14-days after stimulation was negatively affected. These findings suggest that changes in locomotion behaviour due to electrical stimulation as used in pulse trawling are unlikely to substantially compromise survival of the investigated species.

Information on stock status is available only for a few of the species forming the catch assemblage of rapido fishery of the North-central Adriatic Sea (Mediterranean Sea). Species that are caught almost exclusively by this gear, either as target (such as Pectinidae) or accessory catches (such as flatfishes apart from the common sole), remain unassessed mainly due to the lack of data and biological information. Based on cluster analysis, the catch assemblage of this fishery was identified and assessed using CMSY model. The results of this data-poor methodology showed that, among the species analyzed, no one is sustainably exploited. The single-species CMSY results were used as input to an extension of the same model, to test the effect of four different harvest control rule (HCR) scenarios on the entire catch assemblage, through 15-years forecasts. The analysis showed that the percentage of the stocks that will reach Bmsy at the end of the projections will depend on the HCR applied. Forecasts showed that a reduction of 20% of fishing effort may permit to most of the target and accessory species of the rapido trawl fishery in the Adriatic Sea to recover to Bmsy levels within 15 years, also providing a slight increase in the expected catches.

Marine organisms show population structure at a relatively fine spatial scale, even in open habitats. The tools commonly used to assess subtle patterns of connectivity have diverse levels of resolution and can complement each other to inform on population structure. We assessed and compared the discriminatory power of genetic markers and otolith shape to reveal the population structure on evolutionary and ecological time scales of the common sole (Solea solea), living in the Eastern English Channel (EEC) stock off France and the UK. First, we genotyped fish with Single Nucleotide Polymorphisms to assess population structure at an evolutionary scale. Then, we tested for spatial segregation of the subunits using otolith shape as an integrative tracer of life history. Finally, a supervised machine learning framework was applied to genotypes and otolith phenotypes to probabilistically assign adults to subunits and assess the discriminatory power of each approach. Low but significant genetic differentiation was found among subunits. Moreover, otolith shape appeared to vary spatially, suggesting spatial population structure at fine spatial scale. However, results of the supervised discriminant analyses failed to discriminate among subunits, especially for otolith shape. We suggest that the degree of population segregation may not be strong enough to allow for robust fish assignments. Finally, this study revealed a weak yet existing metapopulation structure of common sole at the fine spatial scale of the EEC based on genotypes and otolith shape, with one subunit being more isolated. Our study argues for the use of complementary tracers to investigate marine population structure. ispartof: PLOS ONE vol:15 issue:11 ispartof: location:United States status: published

International audience; Coastal and estuarine nurseries are composed of habitats with different biotic and abiotic features. Quantifying the contribution of different habitats within nurseries to juvenile fish feeding would help identify those that are essential in the completion of their life cycle, by providing food resources that maximise growth and survival. Essential habitats for four bentho-demersal fish species (whiting, sea bass, plaice and common sole) in an estuarine nursery were identified using gut contents and stable isotopes. Habitats differed in isotopic ratios and benthic communities. The estuarine gradient defined the macrofauna communities and sources of organic matter used by primary consumers. Trophic niche overlaps and trophic contribution of habitats highlighted that the species used both intertidal and subtidal habitats as feeding grounds. Flatfish were local feeders and fed on prey available mainly in the habitat in which they were caught, suggesting feeding behaviour that required little energy for movement. Sea bass were concentrated in upstream habitats, with intertidal mudflats contributing for nearly half of its diet. Whiting had an ubiquitous feeding strategy, suggesting that it may target prey with the most energetic gain in the habitats. Hence, habitats were used simultaneously during the same season or asynchronously throughout the year by the juvenile fish studied, suggesting no preference for a specific habitat at the community scale. Finally, both trophic tracers demonstrated the trophic importance of intertidal mudflats, especially for the sea bass and common sole, with contributions up to the half and two-third of their diet respectively.

The amount of potentially toxic chemicals in a fish depends on various environmental factors, such as temperature and feeding ecology, which can be affected by Global Changes (GC). The main objective of the present work was to study the relative influence of temperature, food quality and food availability on the growth and contamination of juveniles of common sole (Solea solea), a marine flatfish species known to be a relevant indicator of the nursery quality. It focuses on two Persistent Organic Pollutants (CB153 and L -PFOS) of legacy and emerging concern, respectively. To achieve this, we used a toxicokinetic (TK) model in which toxicant flows are mechanistically predicted using a bioenergetic model based on the Dynamic Energy Budget (DEB) theory. This modelling framework was applied to juvenile sole from the Gironde estuary (SW France) and allows accounting for the influence of environmental conditions on fish biological processes involved in toxicant fluxes. To compare their respective influence on model predictions of age, length, and contamination at puberty, we included in a global sensitivity analysis: (1) environmental variability gathered from literature for this particular estuary and (2) TK parameters (i.e. assimilation efficiency AE and elimination rate k ˙ e ) variability and uncertainty gathered from literature about each contaminant but for different fish species and experimental conditions. Then, model predictions were confronted to fish contamination measurements from the Gironde Estuary with different combinations of TK parameter values from literature. Results highlighted a key role of diet composition on fish contamination and growth while water temperature only affected growth. It stressed the need to focus on GC impact on benthic communities and their consequences on juvenile fish diet for future work on GC scenarios. Furthermore, for both chemical, the range of variability of TK parameters from experiments led to underestimated fish contaminations. The best model fits were obtained using TK parameter values from model applications: from Mounier et al. (n.d.) for CB153 (Solea solea, experiment, AE=0.8 and k ˙ e =0 d−1) and from de Vos et al. (2008) for PFOS (food chain of the Western Scheldt estuary, The Netherlands, AE=0.8 and k ˙ e =0.8 10−2.d−1).

Seafood is an important component of the human diet. With depleting fish stocks and increasing prices, seafood is prone to fraudulent substitution. DNA barcoding has illustrated fraudulent substitution of fishes in retail and restaurants. Whether substitution also occurs in other steps of the supply chain remains largely unknown. DNA barcoding relies on public reference databases for species identification, but these can contain incorrect identifications. The creation of a high quality genetic reference database for 42 European commercially important fishes was initiated containing 145 Cytochrome c oxidase subunit I (COI) and 152 Cytochrome b (cytB) sequences. This database was used to identify substitution rates of Atlantic cod (Gadus morhua) and common sole (Solea solea) along the fish supply chain in Belgium using DNA barcoding. Three out of 132 cod samples were substituted, in catering (6%), import (5%) and fishmongers (3%). Seven out of the 41 processed sole samples were substituted, in wholesale (100%), food services (50%), retailers (20%) and catering (8%). Results show that substitution of G. morhua and S. solea is not restricted to restaurants, but occurs in other parts of the supply chain, warranting for more stringent controls along the supply chain to increase transparency and trust among consumers. ispartof: FOOD AND CHEMICAL TOXICOLOGY vol:141 ispartof: location:England status: published

In the present study, the histological-based condition of common sole (Solea solea) larvae in the English Channel was evaluated to assess the relevance of experimentally-calibrated indices for wild collected specimens. Based on topographical observation of foregut, midgut, hindgut, liver and pancreas, each of the 202 larvae analysed was attributed one of the six grades of a condition index that was developed for sole in the nineties. In parallel, a synthetic table of 20 criteria historically used as condition indicators was created from an extensive review of the literature. These criteria were related to tissular integrity, cells height, nuclei, presence of prey and vacuolisation of the same five target organs. For each larva, each criterion was scored on a scale from one to three. Multiple correspondence analyses coupled to clustering and indicator values were used to explore the relationship between the condition index and criteria as well as to highlight which complementary information the latter could provide to the former. Results showed that some adjacent grades were related to the same set of scored criteria, suggesting that these grades are not as distinguishable in the field as they can be in controlled conditions. Some criteria like vacuoles in the enterocytes, size of the hepatocytes, amount of zymogen, stain of acini, presence of prey in the digestive tract and goblet cells in the foregut, were independent of the condition index and depicted more recent food intake than a true condition status. Conversely, criteria related to tissular integrity as well as presence of energetics reserves like vacuoles in the liver appeared more relevant to evaluate the condition status of fish larvae since their increasing scores were associated to different grades. It is concluded that the grading system obtained from experimental observations may not be adapted to reflect the different larval condition states that could be encountered in the field. A simplified grading system, based on three grades and a reduced set of relevant criteria is then proposed.

The high nutritional quality of common sole Solea solea increases its value for the fishery industry and for the aquaculture sector. To ensure the expansion of its production, it is necessary to implement farming and broodstock management technique to produce high quality eggs and larvae. This work summarizes eight years of study on reproductive performances, growth and parental contribution of a common sole broodstock from the Mediterranean-North Adriatic Sea. The broodstock (11 females and 13 males) reached the peak of fecundity after 5/6 years of captivity, with a production of 296.48 and 376.54 × 103 of total eggs kg−1 female with a fertilization rate of 31.6 ± 18.3 and 41.9 ± 23.8 %, respectively. Results shows that variations in temperature cycles are pivotal for a successful breeding season, and body condition during the first 3 years of captivity was the most important parameter positively correlated to parental contribution for both males and females. Parental contribution was assessed by eight species-specific microsatellite loci during the first 3 years of reproduction. Although the two sexes displayed different temporal trends, parentage assessment demonstrated an overall increase in the number of active breeders. However, only 13 couples out of 50 produced the 70.4 % of the larvae in year 5, confirming the same reproduction behavioural pattern in Mediterranean common sole than that observed both in Senegalese sole and in common sole of Atlantic origin. This work provides valuable data needed to understand the mechanisms behind the maturation characteristics of this species and support future strategy for the establishment and management of Mediterranean common sole aquaculture.