Search

Your search keyword '"Coman, F."' showing total 85 results
Start Over Author "Coman, F."
85 results on '"Coman, F."'

11. Data Descriptor: Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Author

Brown, MV, Van De Kamp, J, Ostrowski, M, Seymour, JR, Ingleton, T, Messer, LF, Jeffries, T, Siboni, N, Laverock, B, Bibiloni-Isaksson, J, Nelson, TM, Coman, F, Davies, CH, Frampton, D, Rayner, M, Goossen, K, Robert, S, Holmes, B, Abell, GCJ, Craw, P, Kahlke, T, Sow, SLS, McAllister, K, Windsor, J, Skuza, M, Crossing, R, Patten, N, Malthouse, P, Van Ruth, PD, Paulsen, I, Fuhrman, JA, Richardson, A, Koval, J, Bissett, A, Fitzgerald, A, Moltmann, T, and Bodrossy, L

Subjects
Bacteria, Sequence Analysis, RNA, Oceans and Seas, Microbiota, Australia, Biodiversity, Water Microbiology, Archaea
Abstract

© 2018 Author(s). Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

Published
2018

13. Corrigendum:A database of marine phytoplankton abundance, biomass and species composition in Australian waters (Scientific Data (2016) 3 (160043) DOI: 10.1038/sdata.2016.43)

Author

Davies, CH, Coughlan, A, Hallegraeff, G, Ajani, P, Armbrecht, L, Atkins, N, Bonham, P, Brett, S, Brinkman, R, Burford, M, Clementson, L, Coad, P, Coman, F, Davies, D, Dela-Cruz, J, Devlin, M, Edgar, S, Eriksen, R, Furnas, M, Hassler, C, Hill, D, Holmes, M, Ingleton, T, Jameson, I, Leterme, SC, Lønborg, C, McLaughlin, J, McEnnulty, F, McKinnon, AD, Miller, M, Murray, S, Nayar, S, Patten, R, Pausina, SA, Pritchard, T, Proctor, R, Purcell-Meyerink, D, Raes, E, Rissik, D, Ruszczyk, J, Slotwinski, A, Swadling, KM, Tattersall, K, Thompson, P, Thomson, P, Tonks, M, Trull, TW, Uribe-Palomino, J, Waite, AM, Yauwenas, R, Zammit, A, and Richardson, AJ

Subjects
TheoryofComputation_COMPUTATIONBYABSTRACTDEVICES, GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries)
Abstract

© The Author(s) 2016. A series of errors in our database were brought to our attention by readers, and have been corrected in an updated version of this database, which is accessible via the AODN at the following link: https://portal.aodn.org.au/search?uuid =75f4f1fc-bee3-4498-ab71-aa1ab29ab2c0 The custodian details of several datasets were incorrect. These fields in the metadata table have been updated to correctly assign P744, P746, P748, and P778 to the Australian Antarctic Division, and P752 to the Royal Belgian Institute of Natural Sciences. Species names and functional group assignments have been changed for a small number of records to fix identified errors. Tripos brevis and Tripos arietinus were spelt incorrectly, and have been duly corrected. Pedinellaceae was wrongly assigned to dinoflagellate as a functional group, and has now been re-assigned to flagellate. The 'Naked flagellate' group has been renamed 'Flagellate' as there is some inconsistency in the use of the term 'Naked flagellate' and what precisely would be included. The functional group 'Other', has also been excluded as this contained data that was not necessarily phytoplankton but had been found in phytoplankton counts. The macroalgae Murrayella australica, Cladophora spp., Chlorohormidium sp., Eudorina spp., Tribonema spp., Chlorohormidium spp. were also removed. In addition to these corrections, three datasets have been extended to include more recently acquired data: P 597 IMOS Australian Continuous Plankton Recorder survey (ongoing dataset, 59089 new records as of 2016-08-31); P599 IMOS National Reference Stations (ongoing dataset, 14669 new records as of 2016-08-31); and P1068 Great Barrier Reef Expedition 1928-29 (new dataset, 1340 new records). Table 1 provides a summary of the overall change in database contents. (Table Presented). This dataset will continue to grow and will be regularly updated with new data and any further corrections to the data. Users can email imos-planktonatcsiro.au with any comments, which will be reviewed and included in future updates if applicable. The AODN portal will always direct the user to the most recent version, the original version will remain available at http://dx.doi.org/10.4225/69/ 56454b2ba2f79, and interim versions will be available on request.

Published
2017

14. Impact of Safety-Related Dose Reductions or Discontinuations on Sustained Virologic Response in HCV-Infected Patients: Results from the GUARD-C Cohort

Author

GUARD C, Study Group, Hassanein, T, Bakalos, G, Ahlers, S, Shiffman, Ml, Tallarico, L, Reddy, Kr, Orlandini, A, Ferenci, P, Derbala, M, Coppola, C, Foster, Gr, Basho, J, Shabanaj, G, Harxhi, A, Debzi, N, Afredj, N, Guessab, N, Mahindad, N, Mahiou, H, Aissaoui, M, Al Qameesh, J, Al Ghandoor, Z, Assene, C, Bastens, B, Brixko, C, Cool, M, De Galocsy, C, Delwaide, J, George, C, Laukens, P, Lefebvre, V, Mulkay, Jp, Nevens, F, Servais, B, Van Vlierberghe, H, Horsmans, Y, Henrion, J, Sprengers, D, Michielsen, P, Bourgeois, S, Lasser, L, Langlet, P, Robaeys, G, Martinet, Jp, Warzee, P, Hoste, P, Reynaert, H, Juriens, I, Decaestecker, J, Van Der Meersch, F, Janssens, F, Ahmetagic, S, Verhaz, A, Bevanda, M, Calkic, L, Ibrahimpasic, N, Mesihovic, R, Mello, Ce, Ruiz, Fj, Martins Junior, E, Ferraz, Ml, Silva, G, Mendes, C, Lyra, A, Silva, Mh, Gomide, G, Fernandes, Jc, Pereira, P, Correa, Mc, Teixeira, R, Yousry, A, Hanno, A, Gabr, M, Omar, A, Esmat, G, Karatapanis, S, Nikolopoulou, V, Giannoulis, G, Manolakopoulos, S, Elefsiniotis, I, Drakoulis, C, Dimitroulopoulos, D, Kanatakis, S, Ketikoglou, I, Mimidis, K, Evgenidis, N, Akriviades, E, Vafiadi Zoubouli, I, Tsianos, E, Mela, M, Orfanou, E, Mousoulis, G, Karagiannis, I, Manesis, E, Varga, M, Nemesánszky, E, Fried, K, Schuller, J, Szalay, F, Lengyel, G, Tornai, I, Banyai, T, Lesch, M, Nagy, I, Gervain, J, Tusnadi, A, Schneider, F, Szentgyörgyi, L, Hunyady, B, Vincze, A, Tolvaj, G, Varkonyi, I, Makkai, E, Enyedi, J, Racz, I, Hausinger, P, Váczi, Z, Patai, Á, Ozsvár, Z, Lakner, L, Ribiczey, P, Bhalla, A, Somani, S, Luaia, R, Rao, P, Philip, M, Lawate, P, Nagral, A, Sood, A, Parikh, S, Merat, S, Nassiri Toosi, M, Alavian, Sm, Zali, Mr, Daryani, Ne, Drenaggi, D, Attili, Af, Bandiera, F, Bassi, P, Bellati, G, Bellantani, S, Brunetto, MAURIZIA ROSSANA, Bruno, S, Castelli, F, Castellacci, R, Cattelan, Am, Colombo, M, Craxi, A, D'Angelo, S, Colombo, S, Demelia, L, Di Perri, G, Di Giacomo, A, Ferrari, C, Francisci, D, Casinelli, K, Ganga, R, Costa, C, Mangia, A, Russo, Fp, Matarazzo, F, Mazzella, G, Mazzeo, M, Memoli, M, Montalbano, M, Montalto, G, Pieri, A, Passariello, N, Picciotto, A, Pietrangelo, A, Pirisi, M, Quirino, T, Raimondo, G, Rapaccini, Gl, Rizzardini, G, Rizzetto, M, Russello, M, Sabusco, G, Santantonio, T, Soardo, G, Amedea, A, Verucchi, G, Vinelli, F, Zignego, Al, Zuin, M, Ascione, A, Vinci, M, Pigozzi, Mg, Tundo, P, Saracco, Gm, Amoroso, P, Andreoni, M, Colletta, C, Erne, E, Megna, As, Biglino, A, Chiriaco, P, Foti, G, Spinzi, G, D'Amico, E, Paik, Sw, Ahn, Sh, Lee, Yn, Kim, Y, Yang, J, Han, Sy, Varghese, R, Al Gharabally, A, Askar, H, Sharara, A, Yaghi, C, Rached, Aa, Houmani, Z, Zaarour, F, Dohaibi, A, Ivanovski, L, Joksimovic, N, Abbas, Z, Memon, S, Mohsin, A, Masood, S, Hashmi, Z, Halota, W, Deron, Z, Mazur, W, Flisiak, R, Lipczynski, A, Musialik, J, Piekarska, A, Augustyniak, K, Baka Cwierz, B, Simon, K, Gietka, A, Berak, H, Sieklucki, J, Radowska, D, Szlauer, B, Piekos, T, Olszok, I, Jablkowski, M, Orszulak, G, Warakomska, I, Aleixo, Mj, Valente, C, Macedo, G, Sarmento Castro, R, Roxo, F, Faria, T, Mansinho, K, Velez, J, Ramos, Jp, Guerreiro, H, Alberto, S, Monteverde, C, Serejo, F, Peixe, P, Malhado, J, Curescu, M, Streinu Cercel, A, Caruntu, F, Livia, H, Preotescu, L, Arama, V, Ancuta, I, Gheorghe, L, Stanciu, C, Trifan, A, Acalovschi, M, Andreica, V, Pascu, O, Lencu, M, Sporea, I, Olteanu, D, Ionita Radu, F, Fierbinteanu Braticevici, C, Motoc, A, Silaghi, R, Musat, M, Coman, F, Stan, M, Cijevschi, C, Miftode, E, Delic, D, Jesic, R, Nozic, D, Svorcan, P, Fabri, M, Konstantinovic, L, Pelemis, M, Jankovic, G, Todorovic, Z, Nagorni, A, Kupcova, V, Skladany, L, Szantova, M, Krkoska, D, Jarcuska, P, Schreter, I, Oltman, M, Bocakova, J, Bunganic, I, Holoman, J, Giguere, A, Abdou, A. M., Basic (bio-) Medical Sciences, Gastroenterology, Laboratory of Molecullar and Cellular Therapy, Liver Cell Biology, Michielsen, Peter, GUARD-C Study Group, Graham R. Foster, Carmine Coppola, Moutaz Derbala, Peter Ferenci, Alessandra Orlandini, K. Rajender Reddy, Ludovico Tallarico, Mitchell L. Shiffman, Silke Ahler, Georgios Bakalo, Tarek Hassanein, GUARD-C Study Group: [.., Davide Drenaggi, Adolfo Francesco Attili, Franco Bandiera, Paolo Bassi, Giorgio Bellati, Stefano Bellantani, Maurizia Brunetto, Savino Bruno, Francesco Castelli, Roberto Castellacci, Anna Maria Cattelan, Massimo Colombo, Antonio Craxi, Salvatore D'angelo, Silvia Colombo, Luigi Demelia, Giovanni Di Perri, Antonio Di Giacomo, Carlo Ferrari, Daniela Francisci, Katia Casinelli, Roberto Ganga, Chiara Costa, Alessandra Mangia, Francesco Paolo Russo, Filippo Matarazzo, Giuseppe Mazzella, Maurizio Mazzeo, Massimo Memoli, Marzia Montalbano, Giuseppe Montalto, Alessandro Pieri, Nicola Passariello, Antonio Picciotto, Antonello Pietrangelo, Mario Pirisi, Tiziana Quirino, Giovanni Raimondo, Gian Ludovico Rapaccini, Giuliano Rizzardini, Mario Rizzetto, Maurizio Russello, Giuseppe Sabusco, Teresa Santantonio, Giorgio Soardo, Alessandri Amedea, Gabriella Verucchi, Francesco Vinelli, Anna Linda Zignego, Massimo Zuin, Antonio Ascione, Maria Vinci, Maria Graziella Pigozzi, Paolo Tundo, Giorgio Maria Saracco, Pietro Amoroso, Massimo Andreoni, Cosimo Colletta, Elke Erne, Angelo Salomone Megna, Alberto Biglino, Piergiorgio Chiriaco, Giuseppe Foti, Giancarlo Spinzi, Emilio D'amico, …], Foster G.R., Coppola C., Derbala M., Ferenci P., Orlandini A., Reddy K.R., Tallarico L., Shiffman M.L., Ahlers S., Bakalos G., Hassanein T., Basho J., Shabanaj G., Harxhi A., Debzi N., Afredj N., Guessab N., Mahindad N., Mahiou H., Aissaoui M., Al Qameesh J., Al Ghandoor Z., Assene C., Bastens B., Brixko C., Cool M., De Galocsy C., Delwaide J., George C., Laukens P., Lefebvre V., Mulkay J.-P., Nevens F., Servais B., Van Vlierberghe H., Horsmans Y., Henrion J., Sprengers D., Michielsen P., Bourgeois S., Lasser L., Langlet P., Robaeys G., Martinet J.-P., Warzee P., Hoste P., Reynaert H., Juriens I., Decaestecker J., Van Der Meersch F., Janssens F., Ahmetagic S., Verhaz A., Bevanda M., Calkic L., Ibrahimpasic N., Mesihovic R., Mello C.E., Ruiz F.J., Junior E.M., Ferraz M.L., Silva G., Mendes C., Lyra A., Silva M.H., Gomide G., Fernandes J.C., Pereira P., Correa M.C., Teixeira R., Yousry A., Hanno A., Gabr M., Omar A., Esmat G., Karatapanis S., Nikolopoulou V., Giannoulis G., Manolakopoulos S., Elefsiniotis I., Drakoulis C., Dimitroulopoulos D., Kanatakis S., Ketikoglou I., Mimidis K., Evgenidis N., Akriviades E., Vafiadi-Zoubouli I., Tsianos E., Mela M., Orfanou E., Mousoulis G., Karagiannis I., Manesis E., Varga M., Nemesanszky E., Fried K., Schuller J., Szalay F., Lengyel G., Tornai I., Banyai T., Lesch M., Nagy I., Gervain J., Tusnadi A., Schneider F., Szentgyorgyi L., Hunyady B., Vincze A., Tolvaj G., Varkonyi I., Makkai E., Enyedi J., Racz I., Hausinger P., Vaczi Z., Patai A., Ozsvar Z., Lakner L., Ribiczey P., Bhalla A., Somani S., Luaia R., Rao P., Philip M., Lawate P., Nagral A., Sood A., Parikh S., Merat S., Nassiri-Toosi M., Alavian S.-M., Zali M.R., Daryani N.E., Drenaggi D., Attili A.F., Bandiera F., Bassi P., Bellati G., Bellantani S., Brunetto M., Bruno S., Castelli F., Castellacci R., Cattelan A.M., Colombo M., Craxi A., D'angelo S., Colombo S., Demelia L., Di Perri G., Di Giacomo A., Ferrari C., Francisci D., Casinelli K., Ganga R., Costa C., Mangia A., Russo F.P., Matarazzo F., Mazzella G., Mazzeo M., Memoli M., Montalbano M., Montalto G., Pieri A., Passariello N., Picciotto A., Pietrangelo A., Pirisi M., Quirino T., Raimondo G., Rapaccini G.L., Rizzardini G., Rizzetto M., Russello M., Sabusco G., Santantonio T., Soardo G., Amedea A., Verucchi G., Vinelli F., Zignego A.L., Zuin M., Ascione A., Vinci M., Pigozzi M.G., Tundo P., Saracco G.M., Amoroso P., Andreoni M., Colletta C., Erne E., Megna A.S., Biglino A., Chiriaco P., Foti G., Spinzi G., D'amico E., Paik S.W., Ahn S.-H., Lee Y.N., Kim Y., Yang J., Han S.Y., Varghese R., Al Gharabally A., Askar H., Sharara A., Yaghi C., Abou Rached A., Houmani Z., Zaarour F., Dohaibi A., Ivanovski L., Joksimovic N., Abbas Z., Memon S., Mohsin A., Masood S., Hashmi Z., Halota W., Deron Z., Mazur W., Flisiak R., Lipczynski A., Musialik J., Piekarska A., Augustyniak K., Baka-Cwierz B., Simon K., Gietka A., Berak H., Sieklucki J., Radowska D., Szlauer B., Piekos T., Olszok I., Jablkowski M., Orszulak G., Warakomska I., Aleixo M.J., Valente C., Macedo G., Sarmento-Castro R., Roxo F., Faria T., Mansinho K., Velez J., Ramos J.P., Guerreiro H., Alberto S., Monteverde C., Serejo F., Peixe P., Malhado J., Curescu M., Streinu-Cercel A., Caruntu F., Livia H., Preotescu L., Arama V., Ancuta I., Gheorghe L., Stanciu C., Trifan A., Acalovschi M., Andreica V., Pascu O., Lencu M., Sporea I., Olteanu D., Ionita-Radu F., Fierbinteanu-Braticevici C., Motoc A., Silaghi R., Musat M., Coman F., Stan M., Cijevschi C., Miftode E., Delic D., Jesic R., Nozic D., Svorcan P., Fabri M., Konstantinovic L., Pelemis M., Jankovic G., Todorovic Z., Nagorni A., Kupcova V., Skladany L., Szantova M., Krkoska D., Jarcuska P., Schreter I., Oltman M., Bocakova J., Bunganic I., Holoman J., Giguere A., Abdou A.M.S., UCL - SSS/IREC-Institut de recherche expérimentale et clinique, UCL - SSS/IREC/GAEN-Pôle d'Hépato-gastro-entérologie, and UCL - (SLuc) Service de gastro-entérologie

Subjects
Genetics and Molecular Biology (all), Male, Chronic Hepatitis, Hepacivirus, Ribavirin/adverse effects, Asthenia/chemically induced, Polyethylene Glycol, Biochemistry, Polyethylene Glycols, Body Mass Index, Chronic Liver Disease, 0302 clinical medicine, Neutropenia/chemically induced, Interferon-alpha/adverse effects, Medicine, Chronic, lcsh:Science, Liver Diseases, virus diseases, Antiviral Agents/adverse effects, Cohort, Science & Technology - Other Topics, 030211 gastroenterology & hepatology, Drug Therapy, Combination, Cohort study, Human, medicine.medical_specialty, Alpha interferon, Gastroenterology and Hepatology, Antiviral Agents, Microbiology, Dose-Response Relationship, 03 medical and health sciences, Pharmacotherapy, Hepatitis C, Chronic/drug therapy, Dose Prediction Methods, Drug Therapy, Anemia/chemically induced, Humans, Hemoglobin, Aged, Medicine and health sciences, Biochemistry, Genetics and Molecular Biology (all), Hepaciviru, Science & Technology, Dose-Response Relationship, Drug, Flaviviruses, lcsh:R, Organisms, Biology and Life Sciences, Proteins, medicine.disease, digestive system diseases, chemistry, Agricultural and Biological Sciences (all), Withholding Treatment, Asthenia, Immunology, Proportional Hazards Model, lcsh:Q, Human medicine, RNA viruses, Physiology, lcsh:Medicine, Peginterferon-alfa, Polyethylene Glycols/adverse effects, Adult, Anemia, Cohort Studies, Female, Hepatitis C, Chronic, Host-Pathogen Interactions, Interferon-alpha, Middle Aged, Neutropenia, Outcome Assessment (Health Care), Proportional Hazards Models, RNA, Viral, Recombinant Proteins, Ribavirin, Medicine (all), chemistry.chemical_compound, Outcome Assessment, Health Care, Medicine and Health Sciences, 030212 general & internal medicine, Viral, Pathology and laboratory medicine, Multidisciplinary, biology, Hepatitis C virus, Pharmaceutics, Hepatitis C, Hematology, Recombinant Protein, Outcome Assessment (Health Care)/methods, Medical microbiology, Host-Pathogen Interaction, Multidisciplinary Sciences, Physiological Parameters, Research Design, Combination, Viruses, Drug, Pathogens, Host-Pathogen Interactions/drug effects, Research Article, Clinical Research Design, Research and Analysis Methods, Internal medicine, Recombinant Proteins/adverse effects, RNA, Viral/blood, Antiviral Agent, business.industry, Body Weight, Hepacivirus/drug effects, Viral pathogens, biology.organism_classification, Hepatitis viruses, Microbial pathogens, RNA, Adverse Events, Cohort Studie, business
Abstract

Background: Despite the introduction of direct-acting antiviral agents for chronic hepatitis C virus (HCV) infection, peginterferon alfa/ribavirin remains relevant in many resource-constrained settings. The non-randomized GUARD-C cohort investigated baseline predictors of safety-related dose reductions or discontinuations (sr-RD) and their impact on sustained virologic response (SVR) in patients receiving peginterferon alfa/ribavirin in routine practice. Methods: A total of 3181 HCV-mono-infected treatment-naive patients were assigned to 24 or 48 weeks of peginterferon alfa/ribavirin by their physician. Patients were categorized by time-to-first sr-RD (Week 4/12). Detailed analyses of the impact of sr-RD on SVR24 (HCV RNA

Published
2015

15. Corrigendum: A database of marine phytoplankton abundance, biomass and species composition in Australian waters (Scientific Data (2016) 3 (160043) DOI: 10.1038/sdata.2016.43)

Author

Davies, CH, Coughlan, A, Hallegraeff, G, Ajani, P, Armbrecht, L, Atkins, N, Bonham, P, Brett, S, Brinkman, R, Burford, M, Clementson, L, Coad, P, Coman, F, Davies, D, Dela-Cruz, J, Devlin, M, Edgar, S, Eriksen, R, Furnas, M, Hassler, C, Hill, D, Holmes, M, Ingleton, T, Jameson, I, Leterme, SC, Lønborg, C, McLaughlin, J, McEnnulty, F, McKinnon, AD, Miller, M, Murray, S, Nayar, S, Patten, R, Pausina, SA, Pritchard, T, Proctor, R, Purcell-Meyerink, D, Raes, E, Rissik, D, Ruszczyk, J, Slotwinski, A, Swadling, KM, Tattersall, K, Thompson, P, Thomson, P, Tonks, M, Trull, TW, Uribe-Palomino, J, Waite, AM, Yauwenas, R, Zammit, A, Richardson, AJ, Davies, CH, Coughlan, A, Hallegraeff, G, Ajani, P, Armbrecht, L, Atkins, N, Bonham, P, Brett, S, Brinkman, R, Burford, M, Clementson, L, Coad, P, Coman, F, Davies, D, Dela-Cruz, J, Devlin, M, Edgar, S, Eriksen, R, Furnas, M, Hassler, C, Hill, D, Holmes, M, Ingleton, T, Jameson, I, Leterme, SC, Lønborg, C, McLaughlin, J, McEnnulty, F, McKinnon, AD, Miller, M, Murray, S, Nayar, S, Patten, R, Pausina, SA, Pritchard, T, Proctor, R, Purcell-Meyerink, D, Raes, E, Rissik, D, Ruszczyk, J, Slotwinski, A, Swadling, KM, Tattersall, K, Thompson, P, Thomson, P, Tonks, M, Trull, TW, Uribe-Palomino, J, Waite, AM, Yauwenas, R, Zammit, A, and Richardson, AJ

Abstract

© 2017 The Author(s). The authors regret that Sarah A. Pausina was omitted in error from the author list of the original version of this Data Descriptor. This omission has now been corrected in the HTML and PDF versions of this Data Descriptor, as well as the accompanying Corrigendum.

Published
2017

17. A database of marine phytoplankton abundance, biomass and species composition in Australian waters

Author

Davies, CH, Coughlan, A, Hallegraeff, G, Ajani, P, Armbrecht, L, Atkins, N, Bonham, P, Brett, S, Brinkman, R, Burford, M, Clementson, L, Coad, P, Coman, F, Davies, D, Dela-Cruz, J, Devlin, M, Edgar, S, Eriksen, R, Furnas, M, Hassler, C, Hill, D, Holmes, M, Ingleton, T, Jameson, I, Leterme, SC, Lønborg, C, McLaughlin, J, McEnnulty, F, McKinnon, AD, Miller, M, Murray, S, Nayar, S, Patten, R, Pritchard, T, Proctor, R, Purcell-Meyerink, D, Raes, E, Rissik, D, Ruszczyk, J, Slotwinski, A, Swadling, KM, Tattersall, K, Thompson, P, Thomson, P, Tonks, M, Trull, TW, Uribe-Palomino, J, Waite, AM, Yauwenas, R, Zammit, A, Richardson, AJ, Davies, CH, Coughlan, A, Hallegraeff, G, Ajani, P, Armbrecht, L, Atkins, N, Bonham, P, Brett, S, Brinkman, R, Burford, M, Clementson, L, Coad, P, Coman, F, Davies, D, Dela-Cruz, J, Devlin, M, Edgar, S, Eriksen, R, Furnas, M, Hassler, C, Hill, D, Holmes, M, Ingleton, T, Jameson, I, Leterme, SC, Lønborg, C, McLaughlin, J, McEnnulty, F, McKinnon, AD, Miller, M, Murray, S, Nayar, S, Patten, R, Pritchard, T, Proctor, R, Purcell-Meyerink, D, Raes, E, Rissik, D, Ruszczyk, J, Slotwinski, A, Swadling, KM, Tattersall, K, Thompson, P, Thomson, P, Tonks, M, Trull, TW, Uribe-Palomino, J, Waite, AM, Yauwenas, R, Zammit, A, and Richardson, AJ

Abstract

There have been many individual phytoplankton datasets collected across Australia since the mid 1900s, but most are unavailable to the research community. We have searched archives, contacted researchers, and scanned the primary and grey literature to collate 3,621,847 records of marine phytoplankton species from Australian waters from 1844 to the present. Many of these are small datasets collected for local questions, but combined they provide over 170 years of data on phytoplankton communities in Australian waters. Units and taxonomy have been standardised, obviously erroneous data removed, and all metadata included. We have lodged this dataset with the Australian Ocean Data Network (http://portal.aodn.org.au/) allowing public access. The Australian Phytoplankton Database will be invaluable for global change studies, as it allows analysis of ecological indicators of climate change and eutrophication (e.g., changes in distribution; diatom:dinoflagellate ratios). In addition, the standardised conversion of abundance records to biomass provides modellers with quantifiable data to initialise and validate ecosystem models of lower marine trophic levels.

Published
2016

18. Corrigendum: A database of marine phytoplankton abundance, biomass and species composition in Australian waters (Scientific Data (2016) 3 (160043) DOI: 10.1038/sdata201643))

Author

Davies, CH, Coughlan, A, Hallegraeff, G, Ajani, P, Armbrecht, L, Atkins, N, Bonham, P, Brett, S, Brinkman, R, Burford, M, Clementson, L, Coad, P, Coman, F, Davies, D, Dela-Cruz, J, Devlin, M, Edgar, S, Eriksen, R, Furnas, M, Hassler, C, Hill, D, Holmes, M, Ingleton, T, Jameson, I, Leterme, SC, Lønborg, C, McLaughlin, J, McEnnulty, F, McKinnon, AD, Miller, M, Murray, S, Nayar, S, Patten, R, Pausina, SA, Pritchard, T, Proctor, R, Purcell-Meyerink, D, Raes, E, Rissik, D, Ruszczyk, J, Slotwinski, A, Swadling, KM, Tattersall, K, Thompson, P, Thomson, P, Tonks, M, Trull, TW, Uribe-Palomino, J, Waite, AM, Yauwenas, R, Zammit, A, Richardson, AJ, Davies, CH, Coughlan, A, Hallegraeff, G, Ajani, P, Armbrecht, L, Atkins, N, Bonham, P, Brett, S, Brinkman, R, Burford, M, Clementson, L, Coad, P, Coman, F, Davies, D, Dela-Cruz, J, Devlin, M, Edgar, S, Eriksen, R, Furnas, M, Hassler, C, Hill, D, Holmes, M, Ingleton, T, Jameson, I, Leterme, SC, Lønborg, C, McLaughlin, J, McEnnulty, F, McKinnon, AD, Miller, M, Murray, S, Nayar, S, Patten, R, Pausina, SA, Pritchard, T, Proctor, R, Purcell-Meyerink, D, Raes, E, Rissik, D, Ruszczyk, J, Slotwinski, A, Swadling, KM, Tattersall, K, Thompson, P, Thomson, P, Tonks, M, Trull, TW, Uribe-Palomino, J, Waite, AM, Yauwenas, R, Zammit, A, and Richardson, AJ

Abstract

© The Author(s) 2016. A series of errors in our database were brought to our attention by readers, and have been corrected in an updated version of this database, which is accessible via the AODN at the following link: https://portal.aodn.org.au/search?uuid =75f4f1fc-bee3-4498-ab71-aa1ab29ab2c0 The custodian details of several datasets were incorrect. These fields in the metadata table have been updated to correctly assign P744, P746, P748, and P778 to the Australian Antarctic Division, and P752 to the Royal Belgian Institute of Natural Sciences. Species names and functional group assignments have been changed for a small number of records to fix identified errors. Tripos brevis and Tripos arietinus were spelt incorrectly, and have been duly corrected. Pedinellaceae was wrongly assigned to dinoflagellate as a functional group, and has now been re-assigned to flagellate. The 'Naked flagellate' group has been renamed 'Flagellate' as there is some inconsistency in the use of the term 'Naked flagellate' and what precisely would be included. The functional group 'Other', has also been excluded as this contained data that was not necessarily phytoplankton but had been found in phytoplankton counts. The macroalgae Murrayella australica, Cladophora spp., Chlorohormidium sp., Eudorina spp., Tribonema spp., Chlorohormidium spp. were also removed. In addition to these corrections, three datasets have been extended to include more recently acquired data: P 597 IMOS Australian Continuous Plankton Recorder survey (ongoing dataset, 59089 new records as of 2016-08-31); P599 IMOS National Reference Stations (ongoing dataset, 14669 new records as of 2016-08-31); and P1068 Great Barrier Reef Expedition 1928-29 (new dataset, 1340 new records). Table 1 provides a summary of the overall change in database contents. (Table Presented). This dataset will continue to grow and will be regularly updated with new data and any further corrections to the data. Users can email imos-planktonatcsiro

Published
2016

19. Cost of detecting malignant lesions by endoscopy in 2741 primary care dyspeptic patients without alarm symptoms

Author

VAKIL N, TALLEY N, VAN ZANTEN SV, FLOOK N, PERSSON T, BJÖRCK E, LIND T, BOLLING STERNEVALD E, STARS I. STUDY GROUP: BAI JC, SEGAL E, DI RISIO C, PEDRANA R, RAINOLDI J, MILUTIN M, PALAZZO F, MACKEN E, BAETENS P, D'HAENS G, CABOOTER M, MARTINET JP, DELWAIDE J, PIESSEVAUX H, BUSET M, JANSSENS J, VERGAUWE P, POLLET S, QUILICI F, RODRIGUEZ TN, DA SILVA EP, NADER F, LUIZ JORGE J, ACHILLES P, CORRÊA BL, GUEDES J, CLARK D, PLOURDE, DESAI M, MORGAN EP, GRAY J, COHEN A, REDDY S, JOBIN G, SADOWSKI D, KELLY A, MORGAN D, ING G, LIANG W, TYTUS R, TEITELBAUM I, LASKO B, KASSNER R, CARLSON B, O'KEEFE D, SOMANI R, GREENSPOON A, FAIERS A, BANKS M, JARDINE F, WOODLAND R, LUCES K, COX R, ROLFE A, FAY D, AKHRAS D, MAZZA G, KIILERICH S, BYTZER P, HENDEL L, ERIKSEN J, THORDAL C, VADSTRUP S, FLY G, GOLDFAIN D, COULANJON G, LEOTHAUD G, DELETTE O, MATHONIERE O, ZRIHEN D, LEMAITRE JP, PEIGNOT JF, BARBERIS A, TORDJMAN G, GOMPEL M, GRANDGUILLAUME J, MARCIANO P, LE TEXIER A, BOYE A, TONDUT A, SCHEER J, SCHMIDT W, KÖLLING W, REGLING S, ALASMAR D, BECKER TESCH A, LEHMANN R, SCHIRRMEISTER G, SPEETZEN G, STAHL HD, ROITENBERG A, KITIS GE, KARAMANOLIS D, TRIANTAFILLOU G, TZIVRAS M, AVGERINOS A, BJÖRNSSON ORVAR K, KRISTJÁNSDÓTTIR, BIRGISSON, VALDIMARSSON, BJÖRNSSON S, SPISNI R, SCARPULLA G, MINOLI G, DELLA BIANCA G, BIANCO MA, PISTOIA MA, VAIRA D, LONGHINI A, CESTARI R, JOMAAS H, JOHANSEN Y, LIER J, LØLAND O, SKJEGSTAD E, JØRUM IM, FONNELØP H, WANGESTAD M, TOMASSEN ST, NORDSTRAND A, HERTZENBERG AB, SAEBØ L, MANSILLA TINOCO R, NORHEIM PD, SOLNØR L, LUNDBY B, TOMALA T, SANAKER H, FAUSKE J, OSHAUG M, LINDSTRØM M, RUDNEVA E, HANSEN AN, SKAG A, WERNER EL, AHLQVIST JO, BØ PE, KJØRLAUG K, EIKELAND T, HATLEBREKKE T, OLSEN K, TUDOR N, DOBRU D, REDIS R, COMAN F, BALADAS H, FOCK KW, HO LK, LIM CC, GROBLER S, ALLY R, ABOO N, VAN RENSBURG C, MOHAME H, SCHNEIDER H, PRINS M, MOOLA S, BEKKER J, ABAD A, MEARIN MANRIQUE F, DOMINGUEZ E, HERRERIAS GUTIÉRREZ JM, DIAZ RUBIO M, WEDÉN M, EDIN R, UNG KA, TOTH E, JOHNSSON F, STUBBERÖD A, TOUR R, FALK A, HULTBER C, LARNEFELDT H, LÖNNEBORG L, ERICSSON M, KNUTSSON AC, FRÖBERG L, LARSSON A, TRACZ S, HOLLENBERG S, WIDE S, POLHEM B, PAULSSON L, GRIMFORS S, ROOS H, SKALENU JO, WEBER KB, STANGHELLINI, VINCENZO, VAKIL N, TALLEY N, VAN ZANTEN SV, FLOOK N, PERSSON T, BJÖRCK E, LIND T, BOLLING-STERNEVALD E, STARS I STUDY GROUP: BAI JC, SEGAL E, DI RISIO C, PEDRANA R, RAINOLDI J, MILUTIN M, PALAZZO F, MACKEN E, BAETENS P, D'HAENS G, CABOOTER M, MARTINET JP, DELWAIDE J, PIESSEVAUX H, BUSET M, JANSSENS J, VERGAUWE P, POLLET S, QUILICI F, RODRIGUEZ TN, DA SILVA EP, NADER F, LUIZ JORGE J, ACHILLES P, CORRÊA BL, GUEDES J, CLARK D, PLOURDE, DESAI M, MORGAN EP, GRAY J, COHEN A, REDDY S, JOBIN G, SADOWSKI D, KELLY A, MORGAN D, ING G, LIANG W, TYTUS R, TEITELBAUM I, LASKO B, KASSNER R, CARLSON B, O'KEEFE D, SOMANI R, GREENSPOON A, FAIERS A, BANKS M, JARDINE F, WOODLAND R, LUCES K, COX R, ROLFE A, FAY D, AKHRAS D, MAZZA G, KIILERICH S, BYTZER P, HENDEL L, ERIKSEN J, THORDAL C, VADSTRUP S, FLY G, GOLDFAIN D, COULANJON G, LEOTHAUD G, DELETTE O, MATHONIERE O, ZRIHEN D, LEMAITRE JP, PEIGNOT JF, BARBERIS A, TORDJMAN G, GOMPEL M, GRANDGUILLAUME J, MARCIANO P, LE TEXIER A, BOYE A, TONDUT A, SCHEER J, SCHMIDT W, KÖLLING W, REGLING S, ALASMAR D, BECKER-TESCH A, LEHMANN R, SCHIRRMEISTER G, SPEETZEN G, STAHL HD, ROITENBERG A, KITIS GE, KARAMANOLIS D, TRIANTAFILLOU G, TZIVRAS M, AVGERINOS A, BJÖRNSSON ORVAR K, KRISTJÁNSDÓTTIR, BIRGISSON, VALDIMARSSON, BJÖRNSSON S, STANGHELLINI V, SPISNI R, SCARPULLA G, MINOLI G, DELLA BIANCA G, BIANCO MA, PISTOIA MA, VAIRA D, LONGHINI A, CESTARI R, JOMAAS H, JOHANSEN Y, LIER J, LØLAND O, SKJEGSTAD E, JØRUM IM, FONNELØP H, WANGESTAD M, TOMASSEN ST, NORDSTRAND A, HERTZENBERG AB, SAEBØ L, MANSILLA-TINOCO R, NORHEIM PD, SOLNØR L, LUNDBY B, TOMALA T, SANAKER H, FAUSKE J, OSHAUG M, LINDSTRØM M, RUDNEVA E, HANSEN AN, SKAG A, WERNER EL, AHLQVIST JO, BØ PE, KJØRLAUG K, EIKELAND T, HATLEBREKKE T, OLSEN K, TUDOR N, DOBRU D, REDIS R, COMAN F, BALADAS H, FOCK KW, HO LK, LIM CC, GROBLER S, ALLY R, ABOO N, VAN RENSBURG C, MOHAME H, SCHNEIDER H, PRINS M, MOOLA S, BEKKER J, ABAD A, MEARIN MANRIQUE F, DOMINGUEZ E, HERRERIAS GUTIÉRREZ JM, DIAZ RUBIO M, WEDÉN M, EDIN R, UNG KA, TOTH E, JOHNSSON F, STUBBERÖD A, TOUR R, FALK A, HULTBER C, LARNEFELDT H, LÖNNEBORG L, ERICSSON M, KNUTSSON AC, FRÖBERG L, LARSSON A, TRACZ S, HOLLENBERG S, WIDE S, POLHEM B, PAULSSON L, GRIMFORS S, ROOS H, SKALENU JO, and WEBER KB

Subjects
Adult, Male, medicine.medical_specialty, Adolescent, Esophageal Neoplasms, MEDLINE, Primary care, ALARM, Young Adult, Stomach Neoplasms, Occult malignancy, Medicine, Humans, Stomach Ulcer, Young adult, Dyspepsia, Aged, Gastrointestinal Neoplasms, Hepatology, medicine.diagnostic_test, Primary Health Care, business.industry, General surgery, Gastroenterology, Age Factors, Endoscopy, Middle Aged, Surgery, Duodenal Ulcer, Gastroesophageal Reflux, Female, business
Abstract

BACKGROUND & AIMS: Current guidelines recommend empirical, noninvasive approaches to manage dyspeptic patients without alarm symptoms, but concerns about missed lesions persist; the cost savings afforded by noninvasive approaches must be weighed against treatment delays. We investigated the prevalence of malignancies and other serious abnormalities in patients with dyspepsia and the cost of detecting these by endoscopy. METHODS: We studied 2741 primary-care outpatients, 18-70 years in age, who met Rome II criteria for dyspepsia. Patients with alarm features (dysphagia, bleeding, weight loss, etc) were excluded. All patients underwent endoscopy. The cost and diagnostic yield of an early endoscopy strategy in all patients were compared with those of endoscopy limited to age-defined cohorts. Costs were calculated for a low, intermediate, and high cost environment. RESULTS: Endoscopies detected abnormalities in 635 patients (23%). The most common findings were reflux esophagitis with erosions (15%), gastric ulcers (2.7%), and duodenal ulcers (2.3%). The prevalence of upper gastrointestinal malignancy was 0.22%. If all dyspeptic patients 50 years or older underwent endoscopy, 1 esophageal cancer and no gastric cancers would have been missed. If the age threshold for endoscopy were set at 50 years, at a cost of $500/endoscopy, it would cost $82,900 (95% CI, $35,714-$250,000) to detect each case of cancer. CONCLUSIONS: Primary care dyspeptic patients without alarm symptoms rarely have serious underlying conditions at endoscopy. The costs associated with diagnosing an occult malignancy are large, but an age cut-off of 50 years for early endoscopy provides the best assurance that an occult malignancy will not be missed.

Published
2009

21. Impacts of gold mine waste disposal on a tropical pelagic ecosystem

Author

Brewer, D.T., primary, Morello, E.B., additional, Griffiths, S., additional, Fry, G., additional, Heales, D., additional, Apte, S.C., additional, Venables, W.N., additional, Rothlisberg, P.C., additional, Moeseneder, C., additional, Lansdell, M., additional, Pendrey, R., additional, Coman, F., additional, Strzelecki, J., additional, Jarolimek, C.V., additional, Jung, R.F., additional, and Richardson, A.J., additional

Published
2012
Full Text
View/download PDF

23. A National Reference Station infrastructure for Australia - Using telemetry and central processing to report multi-disciplinary data streams for monitoring marine ecosystem response to climate change

Author

Lynch, T.P., primary, Roughan, M., additional, Mclaughlan, D., additional, Hughes, D., additional, Cherry, D., additional, Critchley, G., additional, Allen, S., additional, Pender, L., additional, Thompson, P., additional, Richardson, A.J., additional, Coman, F., additional, Steinberg, C., additional, Terhell, D., additional, Seuront, L., additional, Mclean, C., additional, Brinkman, G., additional, and Meyers, G., additional

Published
2008
Full Text
View/download PDF

30. THE EFFECTIVENESS OF HEAT, COLD AND 6-DIMETHYLAMINOPURINE SHOCKS FOR INDUCING TETRAPLOIDY IN THE KURUMA SHRIMP, MARS UPENAEUS JAPONICUS (BATE).

Author

Sellars, M. J., Coman, F. E., Degnan, B. M., and Preston, N. P.

Abstract

In this study tetraploid Marsupenaeus japonicus (Bate) embryos were produced by preventing the first division in mitosis. The effectiveness of temperature and chemical shocks for producing tetraploid M. japonicus were assessed when applied at different times postspawning and for different durations. Tetraploid M. japonicus embryos (spawned at 27°C) were produced by heat shocks at 35°C and 36°C in three and eight spawning samples respectively, and a cold shock at 5°C in a single spawning sample. All temperature shocks inducing tetraploidy were applied 18–23 min postspawning for a 5–10 min duration. The percentage of spawnings successfully inducing tetraploid embryos (i.e., frequency of induction) ranged from 33.33% to 66.67% for the 21, 22 and 23 min postspawning heat shock treatment regimes. The percentage of tetraploid embryos within an induction (i.e., induction rate), as determined by flow cytometry, ranged from 8.82% to 98.12% (ave. ± S.E.) (34.4 ± 21.4%) for the 35°C shock treatments, from 13.12% to 61.02% (35.0 ± 5.0%) for the 36°C shock treatments and was 15% for the 5°C cold shock treatment. No tetraploids were produced for spawnings that received heat shocks above 36°C or below 35°C, or for cold shocks above 5°C for any of the tested postspawning treatment and duration times. Chemical shock with 150 μM 6-dimethylaminopurine did not result in tetraploid M. japonicus embryos at any of the tested postspawning treatment times and durations. Tetraploid M. japonicus embryos were nonviable, with no tetraploid larvae being detected by flow cytometry. Based on our results heat shocking of M. japonicus embryos at 36°C, 23 min postspawning for a 5–10 min duration is the most effective means to produce tetraploids through inhibition of the first mitotic division (taking into consideration the importance of frequency and induction rate equally). [ABSTRACT FROM AUTHOR]

Published
2006
Full Text
View/download PDF

33. Effect of tropical climate on performance during repeated jump-and-reach tests

Author

Olivier Hue, Coman F, Blonc S, and Hertogh C

Subjects
Adult, Male, Tropical Climate, Heart Rate, Humans, Sweating, Basketball, Lactic Acid, Exercise, Guadeloupe, Body Temperature
Abstract

The aim of the present study was to determine the effect of tropical climate (i.e., hot and humid) on performance during multiple jump-and-reach tests.Fourteen male basketball players volunteered to perform 2 randomized series of jump-and-reach tests, which consisted of a jump-and-reach test every 15 sec for 5 min (21 jump-and-reach tests) in two thermal conditions: tropical (TR, 30.4 degrees C, 70% rh) and thermoneutral (TN, 23.1 degrees C, 53% rh). During each test, lactate concentration [La(-)], tympanic temperature (Tty), sweat rate (SR), heart rate (HR), and performance (height: H) were noted at rest, during exercise and recovery. Two hours of recovery separated the TN and TR tests.There were no significant differences in mean height, maximal height or the kinetics between TN and TR. Both conditions induced an increase in height over time (time effect: p0.002). There were no significant differences in [La(-)] at rest or during exercise or recovery in the 2 conditions. Both conditions induced an increase in [La(-)] (time effect: p0.002). There was a tendency toward a higher mean [La(-)] during TR than TN (situation effect, p0.07). However, compared to resting values, [La(-)] values were significantly increased only in TR and not in TN. Tty, was significantly greater (p0.001) at rest and during exercise and recovery in TR than in TN. SR and HR were also significantly greater at rest and during exercise and recovery in TR (p0.001 for SR and HR).We conclude that tropical climate affects physiological responses without improving or decreasing performance during successive jump tests.

40. Large-scale impact of the 2016 Marine Heatwave on the plankton-associated microbial communities of the Great Barrier Reef (Australia).

Author

Doni L, Oliveri C, Lasa A, Di Cesare A, Petrin S, Martinez-Urtaza J, Coman F, Richardson A, and Vezzulli L

Subjects
Animals, Ecosystem, Coral Reefs, Plankton, RNA, Ribosomal, 16S, Australia, Bacteria genetics, Anthozoa, Microbiota
Abstract

The Great Barrier Reef (GBR) is the world's largest coral ecosystem and is threatened by climate change. This study investigated the impact of the 2016 Marine Heatwave (MHW) on plankton associated microbial communities along a ∼800 km transect in the GBR. 16S rRNA gene metabarcoding of archived plankton samples collected from November 2014 to August 2016 in this region showed a significant increase in Planctomycetes and bacteria belonging to the genus Vibrio and Synechococcus during and after the heatwave. Notably, Droplet Digital PCR and targeted metagenomic analysis applied on samples collected four months after the MHW event revealed the presence of several potential pathogenic Vibrio species previously associated with diseases in aquatic animals. Overall, the 2016 MHW significantly impacted the surface picoplankton community and fostered the spread of potentially pathogenic bacteria across the GBR providing an additional threat for marine biodiversity in this area., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Luigi Vezzulli reports financial support was provided by Italian Ministry of University and Research (MUR)., (Copyright © 2023. Published by Elsevier Ltd.)

Published
2023
Full Text
View/download PDF

41. A database of zooplankton biomass in Australian marine waters.

Author

McEnnulty FR, Davies CH, Armstrong AO, Atkins N, Coman F, Clementson L, Edgar S, Eriksen RS, Everett JD, Anthony Koslow J, Lønborg C, McKinnon AD, Miller M, O'Brien TD, Pausina SA, Uribe-Palomino J, Rochester W, Rothlisberg PC, Slotwinski A, Strzelecki J, Suthers IM, Swadling KM, Tonks ML, van Ruth PD, Young JW, and Richardson AJ

Subjects
Animals, Australia, Indian Ocean, Pacific Ocean, Biomass, Zooplankton
Abstract

Zooplankton biomass data have been collected in Australian waters since the 1930s, yet most datasets have been unavailable to the research community. We have searched archives, scanned the primary and grey literature, and contacted researchers, to collate 49187 records of marine zooplankton biomass from waters around Australia (0-60°S, 110-160°E). Many of these datasets are relatively small, but when combined, they provide >85 years of zooplankton biomass data for Australian waters from 1932 to the present. Data have been standardised and all available metadata included. We have lodged this dataset with the Australian Ocean Data Network, allowing full public access. The Australian Zooplankton Biomass Database will be valuable for global change studies, research assessing trophic linkages, and for initialising and assessing biogeochemical and ecosystem models of lower trophic levels.

Published
2020
Full Text
View/download PDF

42. Interferon-Free Regimen: Equally Effective in Treatment Naive and Experienced HCV Patients.

Author

Fofiu C, Boeriu A, Coman F, Fofiu A, Panic N, Bulajic M, and Dobru D

Subjects
2-Naphthylamine, Anilides therapeutic use, Carbamates therapeutic use, Cyclopropanes, Drug Therapy, Combination, Female, Follow-Up Studies, Genotype, Hepatitis C, Chronic virology, Humans, Interferons, Lactams, Macrocyclic, Liver Cirrhosis, Macrocyclic Compounds therapeutic use, Male, Middle Aged, Proline analogs & derivatives, Prospective Studies, Ribavirin therapeutic use, Ritonavir therapeutic use, Sulfonamides therapeutic use, Treatment Outcome, Uracil analogs & derivatives, Uracil therapeutic use, Valine, Viral Load drug effects, Antiviral Agents therapeutic use, Cytochrome P-450 CYP3A Inhibitors therapeutic use, DNA, Viral genetics, Hepacivirus genetics, Hepatitis C, Chronic drug therapy
Abstract

Introduction and Aim: Interferon-free regimen has been reported to be highly efficient in treatment of HCV infection, including patients with compensated cirrhosis. We compared the efficacy of Ombitasvir, Paritaprevir, Ritonavir, Dasabuvir and Ribavirin (OBT/PTV/r, with DSV and RBV) therapy in patients with chronic HCV genotype 1b infection and compensated cirrhosis with and without prior treatment experience with pegylated interferon and ribavirin (IFN/RBV)., Material and Methods: A prospective two-center study was conducted in Mures County Hospital and Brasov County Hospital, Romania in period November 2015-July 2016. Both treatment naïve and PegIFN/RBV experienced patients with chronic HCV genotype 1b infection received 12 weeks of OBT/PTV/r, with DSV and RBV. Sustained virologic response 12 weeks after the treatment and eventual discontinuation of therapy due to adverse events were assessed in order to estimate safety and efficiency of therapeutic regimen., Results: Fifty nine patients were included in study, 35 (59.3%) of them were previously treated with IFN/RBV. Forty four (74.5%) patients were previously diag-nosed with cirrhosis Child Pugh score 5, while 15 (25.4%) with Child Pugh score 6. All 59 patients achieved a SVR12 of 100% and one patient from treatment naïve cohort discontinued the therapy due to hyperbilirubinemia and encephalopathy. However viral load assessed at 12 weeks after discontinuation of therapy in this patient was undetectable. Conclusion An all-oral regimen of co-for-mulated OBT/PTV/r with DSV and RBV results in high rate of sustained virologic response at post-treatment week 12 among HCV GT1b infected patients associated with compensated cirrhosis, regardless of previous treatment experience with PegIFN/RBV., (Copyright © 2019 Fundación Clínica Médica Sur, A.C. Published by Elsevier España, S.L.U. All rights reserved.)

Published
2019
Full Text
View/download PDF

43. Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative.

Author

Brown MV, van de Kamp J, Ostrowski M, Seymour JR, Ingleton T, Messer LF, Jeffries T, Siboni N, Laverock B, Bibiloni-Isaksson J, Nelson TM, Coman F, Davies CH, Frampton D, Rayner M, Goossen K, Robert S, Holmes B, Abell GCJ, Craw P, Kahlke T, Sow SLS, McAllister K, Windsor J, Skuza M, Crossing R, Patten N, Malthouse P, van Ruth PD, Paulsen I, Fuhrman JA, Richardson A, Koval J, Bissett A, Fitzgerald A, Moltmann T, and Bodrossy L

Subjects
Australia, Biodiversity, Oceans and Seas, Sequence Analysis, RNA, Water Microbiology, Archaea genetics, Bacteria genetics, Microbiota
Abstract

Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

Published
2018
Full Text
View/download PDF

44. A database of marine phytoplankton abundance, biomass and species composition in Australian waters.

Author

Davies CH, Coughlan A, Hallegraeff G, Ajani P, Armbrecht L, Atkins N, Bonham P, Brett S, Brinkman R, Burford M, Clementson L, Coad P, Coman F, Davies D, Dela-Cruz J, Devlin M, Edgar S, Eriksen R, Furnas M, Hassler C, Hill D, Holmes M, Ingleton T, Jameson I, Leterme SC, Lønborg C, McLaughlin J, McEnnulty F, McKinnon AD, Miller M, Murray S, Nayar S, Patten R, Pausina SA, Pritchard T, Proctor R, Purcell-Meyerink D, Raes E, Rissik D, Ruszczyk J, Slotwinski A, Swadling KM, Tattersall K, Thompson P, Thomson P, Tonks M, Trull TW, Uribe-Palomino J, Waite AM, Yauwenas R, Zammit A, and Richardson AJ

Published
2017
Full Text
View/download PDF

45. Corrigendum: A database of marine phytoplankton abundance, biomass and species composition in Australian waters.

Author

Davies CH, Coughlan A, Hallegraeff G, Ajani P, Armbrecht L, Atkins N, Bonham P, Brett S, Brinkman R, Burford M, Clementson L, Coad P, Coman F, Davies D, Dela-Cruz J, Devlin M, Edgar S, Eriksen R, Furnas M, Hassler C, Hill D, Holmes M, Ingleton T, Jameson I, Leterme SC, Lønborg C, McLaughlin J, McEnnulty F, McKinnon AD, Miller M, Murray S, Nayar S, Patten R, Pritchard T, Proctor R, Purcell-Meyerink D, Raes E, Rissik D, Ruszczyk J, Slotwinski A, Swadling KM, Tattersall K, Thompson P, Thomson P, Tonks M, Trull TW, Uribe-Palomino J, Waite AM, Yauwenas R, Zammit A, and Richardson AJ

Published
2016
Full Text
View/download PDF

46. A database of marine phytoplankton abundance, biomass and species composition in Australian waters.

Author

Davies CH, Coughlan A, Hallegraeff G, Ajani P, Armbrecht L, Atkins N, Bonham P, Brett S, Brinkman R, Burford M, Clementson L, Coad P, Coman F, Davies D, Dela-Cruz J, Devlin M, Edgar S, Eriksen R, Furnas M, Hassler C, Hill D, Holmes M, Ingleton T, Jameson I, Leterme SC, Lønborg C, McLaughlin J, McEnnulty F, McKinnon AD, Miller M, Murray S, Nayar S, Patten R, Pausina SA, Pritchard T, Proctor R, Purcell-Meyerink D, Raes E, Rissik D, Ruszczyk J, Slotwinski A, Swadling KM, Tattersall K, Thompson P, Thomson P, Tonks M, Trull TW, Uribe-Palomino J, Waite AM, Yauwenas R, Zammit A, and Richardson AJ

Subjects
Australia, Biomass, Climate Change, Ecosystem, Eutrophication, Databases, Factual, Phytoplankton
Abstract

There have been many individual phytoplankton datasets collected across Australia since the mid 1900s, but most are unavailable to the research community. We have searched archives, contacted researchers, and scanned the primary and grey literature to collate 3,621,847 records of marine phytoplankton species from Australian waters from 1844 to the present. Many of these are small datasets collected for local questions, but combined they provide over 170 years of data on phytoplankton communities in Australian waters. Units and taxonomy have been standardised, obviously erroneous data removed, and all metadata included. We have lodged this dataset with the Australian Ocean Data Network (http://portal.aodn.org.au/) allowing public access. The Australian Phytoplankton Database will be invaluable for global change studies, as it allows analysis of ecological indicators of climate change and eutrophication (e.g., changes in distribution; diatom:dinoflagellate ratios). In addition, the standardised conversion of abundance records to biomass provides modellers with quantifiable data to initialise and validate ecosystem models of lower marine trophic levels.

Published
2016
Full Text
View/download PDF

47. Australian dust storm associated with extensive Aspergillus sydowii fungal "bloom" in coastal waters.

Author

Hallegraeff G, Coman F, Davies C, Hayashi A, McLeod D, Slotwinski A, Whittock L, and Richardson AJ

Subjects
Aspergillus genetics, DNA, Ribosomal Spacer genetics, Dust, Molecular Sequence Data, RNA, Ribosomal, 28S genetics, Sequence Analysis, DNA, Spores, Fungal isolation & purification, Tubulin genetics, Weather, Aspergillus classification, Aspergillus isolation & purification, Seawater microbiology
Abstract

A massive central Australian dust storm in September 2009 was associated with abundant fungal spores (150,000/m(3)) and hyphae in coastal waters between Brisbane (27°S) and Sydney (34°S). These spores were successfully germinated from formalin-preserved samples, and using molecular sequencing of three different genes (the large subunit rRNA gene [LSU], internal transcribed spacer [ITS[, and beta-tubulin gene), they were conclusively identified as Aspergillus sydowii, an organism circumstantially associated with gorgonian coral fan disease in the Caribbean. Surprisingly, no human health or marine ecosystem impacts were associated with this Australian dust storm event. Australian fungal cultures were nontoxic to fish gills and caused a minor reduction in the motility of Alexandrium or Chattonella algal cultures but had their greatest impacts on Symbiodinium dinoflagellate coral symbiont motility, with hyphae being more detrimental than spores. While we have not yet seen any soft coral disease outbreaks on the Australian Great Barrier Reef similar to those observed in the Caribbean and while this particular fungal population was non- or weakly pathogenic, our observations raise the possibility of future marine ecosystem pathogen impacts from similar dust storms harboring more pathogenic strains.

Published
2014
Full Text
View/download PDF

48. An epidemiological study of gastric cancer in the adult population referred to gastroenterology medical services in Romania -- a multicentric study.

Author

Dobru D, Pascu O, Tantau M, Gheorghe C, Goldis A, Balan G, Coman F, Fraticiu A, Dumitru E, Mutescu E, Saftoiu A, and Bacarea V

Subjects
Adult, Age Distribution, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Prevalence, Residence Characteristics, Romania epidemiology, Stomach Neoplasms pathology, Stomach Neoplasms epidemiology
Abstract

Aim: The Romanian Society of Digestive Endoscopy proposed a multicentric study to evaluate the prevalence of gastric cancer in the adult population referred to gastroenterology medical services, and also the demographic features of this pathology., Methods: . The study was carried out over the period 1 January 2003 - 31 December 2003 in 11 academic centers in Romania, specialized in gastroenterology, with a uniform national distribution (all areas in the country were represented) and with adequate diagnostic and therapeutic facilities. All centers used identical definition criteria and reported the data using the same protocol and a Microsoft Excel database., Results: During the study period, 640 cases of gastric cancer were reported. In the first stage, the prevalence in each geographical region was calculated. The national prevalence of gastric cancer in the population referred to gastro-intestinal endoscopy services was 2.9 per 100,000 inhabitants over 18 years of age. The demographic data of the studied group were the following: 66.4% men, 33.6% women, 51.7% urban population, 48.3% rural population, mean age 63.07 +/- 12.10 years. The most frequent indications for upper digestive endoscopy were: dyspepsia, weight loss and appetite. 88% of patients had no history of disease with a high risk of gastric cancer. The majority of patients (95.5 %) had advanced gastric cancer at the time of diagnosis, located in the gastric body (40.1 %) and in the antrum (33.8 %). According to Borrmann's classification, 31.4% had type I fungating gastric cancer and 32.1% had type III ulcero-infiltrative gastric cancer. According to the Lauren classification, the most frequent histological type was intestinal adenocarcinoma (63.8 %). Early gastric cancer was found in 4.4% of patients., Conclusions: The prevalence of gastric cancer in the population referred to digestive endoscopy services in Romania is 2.9%, with relatively wide variations at a national level. The study confirms the fact that Romania is a country with a low prevalence of gastric cancer, in accordance with the literature data published for the south of Europe.

Published
2004

49. Effect of tropical climate on performance during repeated jump-and-reach tests.

Author

Hue O, Coman F, Blonc S, and Hertogh C

Subjects
Adult, Body Temperature physiology, Guadeloupe, Heart Rate physiology, Humans, Lactic Acid blood, Male, Sweating physiology, Basketball physiology, Exercise physiology, Tropical Climate
Abstract

Aim: The aim of the present study was to determine the effect of tropical climate (i.e., hot and humid) on performance during multiple jump-and-reach tests., Methods: Fourteen male basketball players volunteered to perform 2 randomized series of jump-and-reach tests, which consisted of a jump-and-reach test every 15 sec for 5 min (21 jump-and-reach tests) in two thermal conditions: tropical (TR, 30.4 degrees C, 70% rh) and thermoneutral (TN, 23.1 degrees C, 53% rh). During each test, lactate concentration [La(-)], tympanic temperature (Tty), sweat rate (SR), heart rate (HR), and performance (height: H) were noted at rest, during exercise and recovery. Two hours of recovery separated the TN and TR tests., Results: There were no significant differences in mean height, maximal height or the kinetics between TN and TR. Both conditions induced an increase in height over time (time effect: p<0.002). There were no significant differences in [La(-)] at rest or during exercise or recovery in the 2 conditions. Both conditions induced an increase in [La(-)] (time effect: p<0.002). There was a tendency toward a higher mean [La(-)] during TR than TN (situation effect, p<0.07). However, compared to resting values, [La(-)] values were significantly increased only in TR and not in TN. Tty, was significantly greater (p<0.001) at rest and during exercise and recovery in TR than in TN. SR and HR were also significantly greater at rest and during exercise and recovery in TR (p<0.001 for SR and HR)., Conclusion: We conclude that tropical climate affects physiological responses without improving or decreasing performance during successive jump tests.

Published
2003

Catalog

Books, media, physical & digital resources
See catalog results