1. Whole-genome analysis of influenza A(H1N1)pdm09 viruses isolated in Uganda from 2009 to 2011
- Author
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Monica Millard, Robert G. Webster, Jocelyn Kiconco, Luswa Lkwago, Titus Tugume, Mariette F. Ducatez, Scott Krauss, Edison Mworozi, Pamela McKenzie, Derrick Mimbe, Rodney L. Coldren, Denis K. Byarugaba, Fred Wabwire-Mangen, Richard J. Webby, Hannah Kibuuka, Bernard Erima, Jasmine Turner, Charlotte Foret, Josephine Bwogi, Walter Reed Project, Makerere University [Kampala, Ouganda] (MAK), College of Veterinary Medecine, University of Minnesota [Twin Cities] (UMN), University of Minnesota System-University of Minnesota System, Minist Hlth, Entebbe, Uganda Virus Research Institute, College of Health Sciences, Muhimbili University of Health and Allied Sciences, Department of Infectious Diseases, St Jude Children's Research Hospital, Interactions hôtes-agents pathogènes [Toulouse] (IHAP), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, U.S Army Medical Research Directorate, US Embassy, US Department of Defense's Global Emerging Infections Surveillance and Response System [W81XWH-06-C-0414], National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services [HHSN266200700005C], Makerere University (MAK), and University of Minnesota [Twin Cities]
- Subjects
0301 basic medicine ,Pulmonary and Respiratory Medicine ,Epidemiology ,[SDV]Life Sciences [q-bio] ,030106 microbiology ,Hemagglutinin (influenza) ,Neuraminidase ,influenza A(H1N1)pdm09 ,Uganda ,whole-genome sequencing ,Hemagglutinin Glycoproteins, Influenza Virus ,Genome, Viral ,Genome ,Evolution, Molecular ,03 medical and health sciences ,Short Article ,Influenza A Virus, H1N1 Subtype ,Phylogenetics ,Influenza, Human ,Humans ,Gene ,Antigens, Viral ,Phylogeny ,Whole genome sequencing ,Genetics ,chemistry.chemical_classification ,biology ,Phylogenetic tree ,Sequence Analysis, RNA ,Public Health, Environmental and Occupational Health ,Virology ,3. Good health ,Amino acid ,030104 developmental biology ,Infectious Diseases ,chemistry ,Amino Acid Substitution ,biology.protein ,RNA, Viral ,Seasons ,whole‐genome sequencing - Abstract
We report a whole-genome analysis of 19 influenza A(H1N1)pdm09 isolates from four Ugandan hospitals between 2009 and 2011. The isolates differed from the vaccine strain A/California/07/2009 by three amino acid substitutions P100S, S220T, and I338V in the hemagglutinin and by two amino acid substitutions V106I and N248D in the neuraminidase proteins with consistent mutations in all gene segments distinguishing isolates from the 2009/2010 to 2010/2011 seasons. Phylogenetic analysis showed low genetic evolution, with genetic distances of 0%-1.3% and 0.1%-1.6% for HA and NA genes, respectively. The amino acid substitutions did not lead to antigenic differences from the reference strains.
- Published
- 2016
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