22 results on '"Colby-Germinario SP"'
Search Results
2. Evaluation of Sofosbuvir (β-D-2'-deoxy-2'-α-fluoro-2'-β-C-methyluridine) as an inhibitor of Dengue virus replication<sup/>.
- Author
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Xu HT, Colby-Germinario SP, Hassounah SA, Fogarty C, Osman N, Palanisamy N, Han Y, Oliveira M, Quan Y, and Wainberg MA
- Subjects
- Cell Line, Dengue drug therapy, Dengue virology, Dengue Virus drug effects, Dengue Virus enzymology, Drug Evaluation, Humans, Inhibitory Concentration 50, Molecular Docking Simulation, Uridine Triphosphate metabolism, Viral Nonstructural Proteins chemistry, Viral Nonstructural Proteins genetics, Viral Nonstructural Proteins metabolism, Antiviral Agents pharmacology, Dengue Virus physiology, Sofosbuvir pharmacology, Virus Replication drug effects
- Abstract
We evaluated Sofosbuvir (SOF), the anti-hepatitis C virus prodrug of β-d-2'-deoxy-2'-α-fluoro-2'-β-C-methyluridine-5'-monophosphate, for potential inhibitory activity against DENV replication. Both cell-based and biochemical assays, based on use of purified DENV full-length NS5 enzyme, were studied. Cytopathic effect protection and virus yield reduction assays confirmed that SOF possessed anti-DENV activity in cell culture with a 50% effective concentration (EC
50 ) of 4.9 µM and 1.4 µM respectively. Real-time RT-PCR verified that SOF inhibits generation of viral RNA with an EC50 of 9.9 µM. Purified DENV NS5 incorporated the active triphosphate form (SOF-TP) into nascent RNA, causing chain-termination. Relative to the natural UTP, the incorporation efficiency of SOF-TP was low (discrimination value = 327.5). In a primer extension assay, SOF-TP was active against DENV NS5 wild-type polymerase activity with an IC50 of 14.7 ± 2.5 µM. The S600T substitution in the B Motif of DENV polymerase conferred 4.3-fold resistance to SOF-TP; this was due to decreased incorporation efficiency rather than enhanced excision of the incorporated SOF nucleotide. SOF has antiviral activity against DENV replication. The high discrimination value in favor of UTP in enzyme assays may not necessarily preclude antiviral activity in cells. SOF may be worthy of evaluation against severe DENV infections in humans.- Published
- 2017
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3. Purification of Zika virus RNA-dependent RNA polymerase and its use to identify small-molecule Zika inhibitors.
- Author
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Xu HT, Hassounah SA, Colby-Germinario SP, Oliveira M, Fogarty C, Quan Y, Han Y, Golubkov O, Ibanescu I, Brenner B, Stranix BR, and Wainberg MA
- Subjects
- Drug Discovery methods, HIV Integrase metabolism, HIV Reverse Transcriptase antagonists & inhibitors, RNA, Viral metabolism, RNA-Dependent RNA Polymerase chemistry, RNA-Dependent RNA Polymerase genetics, Recombinant Proteins metabolism, Sofosbuvir pharmacology, Virus Replication drug effects, Zika Virus drug effects, Zika Virus physiology, Antiviral Agents pharmacology, Enzyme Inhibitors pharmacology, RNA-Dependent RNA Polymerase antagonists & inhibitors, RNA-Dependent RNA Polymerase metabolism, Zika Virus enzymology
- Abstract
Background: The viral RNA-dependent RNA polymerase (RdRp) enzymes of the Flaviviridae family are essential for viral replication and are logically important targets for development of antiviral therapeutic agents. Zika virus (ZIKV) is a rapidly re-emerging human pathogen for which no vaccine or antiviral agent is currently available., Methods: To facilitate development of ZIKV RdRp inhibitors, we have established an RdRp assay using purified recombinant ZIKV NS5 polymerase., Results: We have shown that both the hepatitis C virus (HCV) nucleoside inhibitor sofosbuvir triphosphate and a pyridoxine-derived non-nucleoside small-molecule inhibitor, DMB213, can act against ZIKV RdRp activity at IC 50 s of 7.3 and 5.2 μM, respectively, in RNA synthesis reactions catalysed by recombinant ZIKV NS5 polymerase. Cell-based assays confirmed the anti-ZIKV activity of sofosbuvir and DMB213 with 50% effective concentrations (EC 50 s) of 8.3 and 4.6 μM, respectively. Control studies showed that DMB213 did not inhibit recombinant HIV-1 reverse transcriptase and showed only very weak inhibition of HIV-1 integrase strand-transfer activity. The S604T substitution in motif B of the ZIKV RdRp, which corresponds to the S282T substitution in motif B of HCV RdRp, which confers resistance to nucleotide inhibitors, also conferred resistance to sofosbuvir triphosphate, but not to DMB213. Enzyme assays showed that DMB213 appears to be competitive with natural nucleoside triphosphate (NTP) substrates., Conclusions: Recombinant ZIKV RdRp assays can be useful tools for the screening of both nucleos(t)ide compounds and non-nucleotide metal ion-chelating agents that interfere with ZIKV replication., (© The Author 2016. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2017
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4. Identification of a Pyridoxine-Derived Small-Molecule Inhibitor Targeting Dengue Virus RNA-Dependent RNA Polymerase.
- Author
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Xu HT, Colby-Germinario SP, Hassounah S, Quashie PK, Han Y, Oliveira M, Stranix BR, and Wainberg MA
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- Aedes, Amino Acid Substitution, Animals, Antiviral Agents chemical synthesis, Binding Sites, Catalytic Domain, Cell Line, Chelating Agents chemical synthesis, Cricetinae, Dengue Virus enzymology, Dengue Virus genetics, Dose-Response Relationship, Drug, Drug Design, Epithelial Cells drug effects, Epithelial Cells virology, Gene Expression, Histidine genetics, Histidine metabolism, Humans, Hydroxamic Acids chemical synthesis, Kinetics, Molecular Docking Simulation, Oligopeptides genetics, Oligopeptides metabolism, Picolines chemical synthesis, Protein Binding, Protein Structure, Secondary, RNA-Dependent RNA Polymerase chemistry, RNA-Dependent RNA Polymerase genetics, RNA-Dependent RNA Polymerase metabolism, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Small Molecule Libraries chemical synthesis, Sulfones chemical synthesis, Viral Nonstructural Proteins chemistry, Viral Nonstructural Proteins genetics, Viral Nonstructural Proteins metabolism, Antiviral Agents pharmacology, Chelating Agents pharmacology, Dengue Virus drug effects, Hydroxamic Acids pharmacology, Picolines pharmacology, RNA-Dependent RNA Polymerase antagonists & inhibitors, Small Molecule Libraries pharmacology, Sulfones pharmacology, Viral Nonstructural Proteins antagonists & inhibitors
- Abstract
The viral RNA-dependent RNA polymerase (RdRp) activity of the dengue virus (DENV) NS5 protein is an attractive target for drug design. Here, we report the identification of a novel class of inhibitor (i.e., an active-site metal ion chelator) that acts against DENV RdRp activity. DENV RdRp utilizes a two-metal-ion mechanism of catalysis; therefore, we constructed a small library of compounds, through mechanism-based drug design, aimed at chelating divalent metal ions in the catalytic site of DENV RdRp. We now describe a pyridoxine-derived small-molecule inhibitor that targets DENV RdRp and show that 5-benzenesulfonylmethyl-3-hydroxy-4-hydroxymethyl-pyridine-2-carboxylic acid hydroxyamide (termed DMB220) inhibited the RdRp activity of DENV serotypes 1 to 4 at low micromolar 50% inhibitory concentrations (IC50s of 5 to 6.7 μM) in an enzymatic assay. The antiviral activity of DMB220 against DENV infection was also verified in a cell-based assay and showed a 50% effective concentration (EC50) of <3 μM. Enzyme assays proved that DMB220 was competitive with nucleotide incorporation. DMB220 did not inhibit the enzymatic activity of recombinant HIV-1 reverse transcriptase and showed only weak inhibition of HIV-1 integrase strand transfer activity, indicating high specificity for DENV RdRp. S600T substitution in the DENV RdRp, which was previously shown to confer resistance to nucleoside analogue inhibitors (NI), conferred 3-fold hypersusceptibility to DMB220, and enzymatic analyses showed that this hypersusceptibility may arise from the decreased binding/incorporation efficiency of the natural NTP substrate without significantly impacting inhibitor binding. Thus, metal ion chelation at the active site of DENV RdRp represents a viable anti-DENV strategy, and DMB220 is the first of a new class of DENV inhibitor., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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5. The dual CCR5 and CCR2 inhibitor cenicriviroc does not redistribute HIV into extracellular space: implications for plasma viral load and intracellular DNA decline.
- Author
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Kramer VG, Hassounah S, Colby-Germinario SP, Oliveira M, Lefebvre E, Mesplède T, and Wainberg MA
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- Anti-HIV Agents therapeutic use, Cell Line, Clinical Trials, Phase II as Topic, Culture Media, Enzyme-Linked Immunosorbent Assay, Extracellular Space virology, HIV Infections drug therapy, Humans, Imidazoles therapeutic use, Leukocytes, Mononuclear virology, Real-Time Polymerase Chain Reaction, Sulfoxides, Virus Cultivation, Anti-HIV Agents pharmacology, DNA, Viral analysis, HIV Infections virology, HIV-1 isolation & purification, Imidazoles pharmacology, Viral Load
- Abstract
Objectives: Cenicriviroc is a potent antagonist of the chemokine coreceptors 5 and 2 (CCR5/CCR2) and blocks HIV-1 entry. The CCR5 inhibitor maraviroc has been shown in tissue culture to be able to repel cell-free virions from the cell surface into extracellular space. We hypothesized that cenicriviroc might exhibit a similar effect, and tested this using clinical samples from the Phase IIb study 652-2-202, by measuring rates of intracellular DNA decline. We also monitored viral RNA levels in culture fluids., Methods: We infected PM-1 cells with CCR5-tropic HIV-1 BaL in the presence or absence of inhibitory concentrations of cenicriviroc (20 nM) or maraviroc (50 nM) or controls. Viral load levels and p24 were measured by ELISA, quantitative PCR and quantitative real-time reverse transcription PCR at 4 h post-infection. Frozen PBMC DNA samples from 30 patients with virological success in the Phase IIb study were studied, as were early and late reverse transcript levels. Docking studies compared binding between cenicriviroc/CCR5 and maraviroc/CCR5., Results: Unlike maraviroc, cenicriviroc did not cause an increase in the amount of virus present in culture fluids at 4 h compared with baseline. The use of cenicriviroc did, however, result in lower levels of intracellular viral DNA after 4 h. Structural modelling indicates that cenicriviroc binds more deeply than maraviroc to the hydrophobic pocket of CCR5, providing an explanation for the absence of viral rebound with cenicriviroc., Conclusions: In contrast to maraviroc, cenicriviroc does not repel virus back into extracellular space. Differences in results may be due to superior binding of cenicriviroc to CCR5 compared with maraviroc., (© The Author 2014. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2015
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6. Identification of a dibenzocyclooctadiene lignan as a HIV-1 non-nucleoside reverse transcriptase inhibitor.
- Author
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Han YS, Xiao WL, Xu H, Kramer VG, Quan Y, Mesplède T, Oliveira M, Colby-Germinario SP, Sun HD, and Wainberg MA
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- Cell Line, Dose-Response Relationship, Drug, Drug Evaluation, Preclinical, HIV-2 drug effects, HIV-2 enzymology, Humans, Species Specificity, Structure-Activity Relationship, Cyclooctanes pharmacology, HIV Reverse Transcriptase antagonists & inhibitors, HIV-1 drug effects, HIV-1 enzymology, Lignans pharmacology, Reverse Transcriptase Inhibitors pharmacology
- Abstract
Background: Due to resistance to all classes of anti-HIV drugs and drug toxicity, there is a need for the discovery and development of new anti-HIV drugs., Methods: HIV-1 inhibitors were identified and biologically characterized for mechanism of action., Results: We identified a dibenzocyclooctadiene lignan, termed HDS2 that possessed anti-HIV activity against a wide variety of viral strains with EC50 values in the 1-3 µM range. HDS2 was shown to act as an NNRTI by qPCR and in vitro enzyme assays., Conclusions: This compound provides a new scaffold for further optimization of activity through structure-guided design., (© The Author(s) 2015 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.)
- Published
- 2015
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7. Subtype-specific analysis of the K65R substitution in HIV-1 that confers hypersusceptibility to a novel nucleotide-competing reverse transcriptase inhibitor.
- Author
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Xu HT, Colby-Germinario SP, Quashie PK, Bethell R, and Wainberg MA
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- Amino Acid Substitution, Anti-HIV Agents pharmacology, Drug Resistance, Viral genetics, HIV Reverse Transcriptase genetics, HIV-1 genetics, Humans, Kinetics, HIV-1 drug effects, Reverse Transcriptase Inhibitors pharmacology
- Abstract
Compound A is a novel nucleotide-competing HIV-1 reverse transcriptase (RT) inhibitor (NcRTI) that selects for a unique W153L substitution that confers hypersusceptibility to tenofovir, while the K65R substitution in RT confers resistance against tenofovir and enhances susceptibility to NcRTIs. Although the K65R substitution is more common in subtype C viruses, the impact of subtype variability on NcRTI susceptibility has not been studied. In the present study, we performed experiments with compound A by using purified recombinant RT enzymes and viruses of subtypes B and C and circulating recombinant form CRF_A/G. We confirmed the hypersusceptibility of K65R substitution-containing RTs to compound A for subtype C, CRF_A/G, and subtype B. Steady-state kinetic analysis showed that K65R RTs enhanced the susceptibility to compound A by increasing binding of the inhibitor to the nucleotide binding site of RT in a subtype-independent manner, without significantly discriminating against the natural nucleotide substrate. These data highlight the potential utility of NcRTIs, such as compound A, for treatment of infections with K65R substitution-containing viruses, regardless of HIV-1 subtype., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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8. Exposure to entry inhibitors alters HIV infectiousness and sensitivity to broadly neutralizing monoclonal antibodies.
- Author
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Kramer VG, Varsaneux O, Oliviera M, Colby-Germinario SP, Mesplède T, and Wainberg MA
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- Cell Line, Drug Synergism, HIV Infections virology, Humans, Inhibitory Concentration 50, Maraviroc, Neutralization Tests, Regression Analysis, Virus Replication drug effects, Antibodies, Monoclonal pharmacology, Cyclohexanes pharmacology, HIV Envelope Protein gp120 antagonists & inhibitors, HIV Fusion Inhibitors pharmacology, HIV Infections drug therapy, HIV-1 physiology, Triazoles pharmacology
- Abstract
Background: The development of envelope-specific neutralizing antibodies that can interfere with viral entry into target cells is important for the development of an HIV-1 vaccine. Another means of blocking viral entry is through the use of entry inhibitors such as the CCR5 inhibitor maraviroc (MVC), which can also repel cell-free virus particles from the cell surface. For this reason, we hypothesized that exposure to entry inhibitors might alter viral infectiousness and sensitivity to antibody-mediated neutralization., Methods: The CCR5-tropic HIV-1 variants BaL, AD8, and CC 1/85 were used to infect PM-1 cells in the presence of 2 entry inhibitors, enfuvirtide and MVC. After 4 hours, culture fluids were ultrafiltered and the infectiousness and susceptibility to broadly neutralizing antibodies (2F5, 4E10, 2G12, b12, VRC01, PG9) of viruses exposed to these entry inhibitors were assessed using TZM-bl cells., Results: Viruses exposed to the entry inhibitor MVC exhibited lower infectiousness than controls. Enfuvirtide exposure increased AD8 sensitivity to 2F5, 4E10, VRC01, and b12 and increased BaL sensitivity to 4E10 while lowering BaL sensitivity to b12 and VRC01. MVC-exposed BaL became less susceptible to the gp120-specific antibodies b12, 2G12, and VRC01., Conclusions: Exposure to entry inhibitors altered HIV-1 infectiousness and sensitivity to gp120-specific neutralizing antibodies. This alteration of entry inhibitor-exposed virus has implications for the development of future entry inhibitors and for vaccine development.
- Published
- 2014
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9. Effects of the W153L substitution in HIV reverse transcriptase on viral replication and drug resistance to multiple categories of reverse transcriptase inhibitors.
- Author
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Xu HT, Colby-Germinario SP, Oliveira M, Rajotte D, Bethell R, and Wainberg MA
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- Adenine analogs & derivatives, Adenine pharmacology, Alkynes, Benzoxazines pharmacology, Cyclopropanes, HEK293 Cells, HIV Reverse Transcriptase antagonists & inhibitors, HIV Reverse Transcriptase metabolism, HIV-1 enzymology, HIV-1 genetics, Humans, Lamivudine pharmacology, Microbial Sensitivity Tests, Mutagenesis, Site-Directed, Mutation, Nevirapine pharmacology, Organophosphonates pharmacology, Pyrimidines pharmacology, Recombinant Proteins genetics, Recombinant Proteins metabolism, Tenofovir, Virus Replication, Amino Acid Substitution, Anti-HIV Agents pharmacology, Drug Resistance, Viral genetics, HIV Reverse Transcriptase genetics, HIV-1 drug effects, Reverse Transcriptase Inhibitors pharmacology
- Abstract
A W153L substitution in HIV-1 reverse transcriptase (RT) was recently identified by selection with a novel nucleotide-competing RT inhibitor (NcRTI) termed compound A that is a member of the benzo[4,5]furo[3,2,d]pyrimidin-2-one NcRTI family of drugs. To investigate the impact of W153L, alone or in combination with the clinically relevant RT resistance substitutions K65R (change of Lys to Arg at position 65), M184I, K101E, K103N, E138K, and Y181C, on HIV-1 phenotypic susceptibility, viral replication, and RT enzymatic function, we generated recombinant RT enzymes and viruses containing each of these substitutions or various combinations of them. We found that W153L-containing viruses were impaired in viral replicative capacity and were hypersusceptible to tenofovir (TFV) while retaining susceptibility to most nonnucleoside RT inhibitors. The nucleoside 3TC retained potency against W153L-containing viruses but not when the M184I substitution was also present. W153L was also able to reverse the effects of the K65R substitution on resistance to TFV, and K65R conferred hypersusceptibility to compound A. Biochemical assays demonstrated that W153L alone or in combination with K65R, M184I, K101E, K103N, E138K, and Y181C impaired enzyme processivity and polymerization efficiency but did not diminish RNase H activity, providing mechanistic insights into the low replicative fitness associated with these substitutions. We show that the mechanism of the TFV hypersusceptibility conferred by W153L is mainly due to increased efficiency of TFV-diphosphate incorporation. These results demonstrate that compound A and/or derivatives thereof have the potential to be important antiretroviral agents that may be combined with tenofovir to achieve synergistic results., (Copyright © 2014, American Society for Microbiology. All Rights Reserved.)
- Published
- 2014
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10. The connection domain mutation N348I in HIV-1 reverse transcriptase enhances resistance to etravirine and rilpivirine but restricts the emergence of the E138K resistance mutation by diminishing viral replication capacity.
- Author
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Xu HT, Colby-Germinario SP, Oliveira M, Han Y, Quan Y, Zanichelli V, and Wainberg MA
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- Amino Acid Motifs, HIV Reverse Transcriptase metabolism, HIV-1 drug effects, HIV-1 genetics, HIV-1 physiology, Humans, Nitriles pharmacology, Pyridazines pharmacology, Pyrimidines pharmacology, Rilpivirine, Drug Resistance, Viral, HIV Infections virology, HIV Reverse Transcriptase chemistry, HIV Reverse Transcriptase genetics, HIV-1 enzymology, Mutation, Missense, Reverse Transcriptase Inhibitors pharmacology, Virus Replication drug effects
- Abstract
Clinical resistance to rilpivirine (RPV), a novel nonnucleoside reverse transcriptase (RT) inhibitor (NNRTI), is associated an E-to-K mutation at position 138 (E138K) in RT together with an M184I/V mutation that confers resistance against emtricitabine (FTC), a nucleoside RT inhibitor (NRTI) that is given together with RPV in therapy. These two mutations can compensate for each other in regard to fitness deficits conferred by each mutation alone, raising the question of why E138K did not arise spontaneously in the clinic following lamivudine (3TC) use, which also selects for the M184I/V mutations. In this context, we have investigated the role of a N348I connection domain mutation that is prevalent in treatment-experienced patients. N348I confers resistance to both the NRTI zidovudine (ZDV) and the NNRTI nevirapine (NVP) and was also found to be associated with M184V and to compensate for deficits associated with the latter mutation. Now, we show that both N348I alone and N348I/M184V can prevent or delay the emergence of E138K under pressure with RPV or a related NNRTI, termed etravirine (ETR). N348I also enhanced levels of resistance conferred by E138K against RPV and ETR by 2.2- and 2.3-fold, respectively. The presence of the N348I or M184V/N348I mutation decreased the replication capacity of E138K virus, and biochemical assays confirmed that N348I, in a background of E138K, impaired RT catalytic efficiency and RNase H activity. These findings help to explain the low viral replication capacity of viruses containing the E138K/N348I mutations and how N348I delayed or prevented the emergence of E138K in patients with M184V-containing viruses.
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- 2014
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11. Role of the K101E substitution in HIV-1 reverse transcriptase in resistance to rilpivirine and other nonnucleoside reverse transcriptase inhibitors.
- Author
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Xu HT, Colby-Germinario SP, Huang W, Oliveira M, Han Y, Quan Y, Petropoulos CJ, and Wainberg MA
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- Alkynes, Benzoxazines chemistry, Benzoxazines pharmacology, Cyclopropanes, Delavirdine chemistry, Delavirdine pharmacology, Deoxycytidine analogs & derivatives, Deoxycytidine chemistry, Deoxycytidine pharmacology, Drug Resistance, Viral drug effects, Emtricitabine, HEK293 Cells, HIV Reverse Transcriptase antagonists & inhibitors, HIV Reverse Transcriptase metabolism, HIV-1 enzymology, HIV-1 genetics, Humans, Leukocytes, Mononuclear drug effects, Leukocytes, Mononuclear virology, Microbial Sensitivity Tests, Mutagenesis, Site-Directed, Nevirapine chemistry, Nevirapine pharmacology, Nitriles chemistry, Pyridazines chemistry, Pyridazines pharmacology, Pyrimidines chemistry, Reverse Transcriptase Inhibitors chemistry, Rilpivirine, Virus Replication drug effects, Amino Acid Substitution, Drug Resistance, Viral genetics, HIV Reverse Transcriptase genetics, HIV-1 drug effects, Nitriles pharmacology, Pyrimidines pharmacology, Reverse Transcriptase Inhibitors pharmacology
- Abstract
Resistance to the recently approved nonnucleoside reverse transcriptase inhibitor (NNRTI) rilpivirine (RPV) commonly involves substitutions at positions E138K and K101E in HIV-1 reverse transcriptase (RT), together with an M184I substitution that is associated with resistance to coutilized emtricitabine (FTC). Previous biochemical and virological studies have shown that compensatory interactions between substitutions E138K and M184I can restore enzyme processivity and the viral replication capacity. Structural modeling studies have also shown that disruption of the salt bridge between K101 and E138 can affect RPV binding. The current study was designed to investigate the impact of K101E, alone or in combination with E138K and/or M184I, on drug susceptibility, viral replication capacity, and enzyme function. We show here that K101E can be selected in cell culture by the NNRTIs etravirine (ETR), efavirenz (EFV), and dapivirine (DPV) as well as by RPV. Recombinant RT enzymes and viruses containing K101E, but not E138K, were highly resistant to nevirapine (NVP) and delavirdine (DLV) as well as ETR and RPV, but not EFV. The addition of K101E to E138K slightly enhanced ETR and RPV resistance compared to that obtained with E138K alone but restored susceptibility to NVP and DLV. The K101E substitution can compensate for deficits in viral replication capacity and enzyme processivity associated with M184I, while M184I can compensate for the diminished efficiency of DNA polymerization associated with K101E. The coexistence of K101E and E138K does not impair either viral replication or enzyme fitness. We conclude that K101E can play a significant role in resistance to RPV.
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- 2013
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12. Effect of mutations at position E138 in HIV-1 reverse transcriptase and their interactions with the M184I mutation on defining patterns of resistance to nonnucleoside reverse transcriptase inhibitors rilpivirine and etravirine.
- Author
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Xu HT, Colby-Germinario SP, Asahchop EL, Oliveira M, McCallum M, Schader SM, Han Y, Quan Y, Sarafianos SG, and Wainberg MA
- Subjects
- Cells, Cultured, Drug Resistance, Viral genetics, HIV Infections drug therapy, HIV Infections virology, HIV Reverse Transcriptase metabolism, HIV-1 enzymology, HIV-1 genetics, HIV-1 physiology, Humans, Microbial Sensitivity Tests, Mutation, Rilpivirine, Virus Replication drug effects, Anti-HIV Agents pharmacology, HIV Reverse Transcriptase antagonists & inhibitors, HIV Reverse Transcriptase genetics, HIV-1 drug effects, Nitriles pharmacology, Pyridazines pharmacology, Pyrimidines pharmacology, Reverse Transcriptase Inhibitors pharmacology
- Abstract
Impacts of mutations at position E138 (A/G/K/Q/R/V) alone or in combination with M184I in HIV-1 reverse transcriptase (RT) were investigated. We also determined why E138K is the most prevalent nonnucleoside reverse transcriptase inhibitor mutation in patients failing rilpivirine (RPV) therapy. Recombinant RT enzymes and viruses containing each of the above-mentioned mutations were generated, and drug susceptibility was assayed. Each of the E138A/G/K/Q/R mutations, alone or in combination with M184I, resulted in decreased susceptibility to RPV and etravirine (ETR). The maximum decrease in susceptibility to RPV was observed for E138/R/Q/G by both recombinant RT assay and cell-based assays. E138Q/R-containing enzymes and viruses also showed the most marked decrease in susceptibility to ETR by both assays. The addition of M184I to the E138 mutations did not significantly change the levels of diminution in drug susceptibility. These findings indicate that E138R caused the highest level of loss of susceptibility to both RPV and ETR, and, accordingly, E138R should be recognized as an ETR resistance-associated mutation. The E138K/Q/R mutations can compensate for M184I in regard to both enzymatic fitness and viral replication capacity. The favored emergence of E138K over other mutations at position E138, together with M184I, is not due to an advantage in either the level of drug resistance or viral replication capacity but may reflect the fact that E138R and E138Q require two distinct mutations to occur, one of which is a disfavorable G-to-C mutation, whereas E138K requires only a single favorable G-to-A hypermutation. Of course, other factors may also affect the concept of barrier to resistance.
- Published
- 2013
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13. HIV gp120 H375 is unique to HIV-1 subtype CRF01_AE and confers strong resistance to the entry inhibitor BMS-599793, a candidate microbicide drug.
- Author
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Schader SM, Colby-Germinario SP, Quashie PK, Oliveira M, Ibanescu RI, Moisi D, Mespléde T, and Wainberg MA
- Subjects
- Amino Acid Sequence, Anti-HIV Agents chemistry, Anti-HIV Agents metabolism, Antibodies, Neutralizing immunology, Cell Line, Tumor, Genes, env, Genotype, HIV Antibodies immunology, HIV Envelope Protein gp120 chemistry, HIV Envelope Protein gp120 immunology, HIV Envelope Protein gp120 metabolism, HIV Infections drug therapy, HIV Infections immunology, HIV-1 genetics, HIV-1 immunology, HIV-1 isolation & purification, HIV-2 drug effects, Humans, Models, Molecular, Mutagenesis, Site-Directed, Piperidines chemistry, Piperidines metabolism, Polymorphism, Genetic, Protein Structure, Quaternary, Pyrazines chemistry, Pyrazines metabolism, Sequence Alignment, Anti-HIV Agents pharmacology, Drug Resistance, Viral genetics, HIV Envelope Protein gp120 genetics, HIV-1 drug effects, Piperidines pharmacology, Pyrazines pharmacology, Virus Internalization drug effects
- Abstract
BMS-599793 is a small molecule entry inhibitor that binds to human immunodeficiency virus type 1 (HIV-1) gp120, resulting in the inhibition of CD4-dependent entry into cells. Since BMS-599793 is currently considered a candidate microbicide drug, we evaluated its efficacy against a number of primary patient HIV isolates from different subtypes and circulating recombinant forms (CRFs) and showed that activity varied between ∼3 ρM and 7 μM at 50% effective concentrations (EC(50)s). Interestingly, CRF01_AE HIV-1 isolates consistently demonstrated natural resistance against this compound. Genotypic analysis of >1,600 sequences (Los Alamos HIV sequence database) indicated that a single amino acid polymorphism in Env, H375, may account for the observed BMS-599793 resistance in CRF01_AE HIV-1. Results of site-directed mutagenesis experiments confirmed this hypothesis, and in silico drug docking simulations identified a drug resistance mechanism at the molecular level. In addition, CRF01_AE viruses were shown to be resistant to multiple broadly neutralizing monoclonal antibodies. Thus, our results not only provide insight into how Env polymorphisms may contribute to entry inhibitor resistance but also may help to elucidate how HIV can evade some broadly neutralizing antibodies. Furthermore, the high frequency of H375 in CRF01_AE HIV-1, and its apparent nonoccurrence in other subtypes, could serve as a means for rapid identification of CRF01_AE infections.
- Published
- 2012
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14. Maraviroc and other HIV-1 entry inhibitors exhibit a class-specific redistribution effect that results in increased extracellular viral load.
- Author
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Kramer VG, Schader SM, Oliveira M, Colby-Germinario SP, Donahue DA, Singhroy DN, Tressler R, Sloan RD, and Wainberg MA
- Subjects
- Alkynes, Anti-HIV Agents pharmacology, Benzoxazines pharmacology, Benzylamines, Cell Line, Cyclams, Cyclopropanes, DNA, Viral analysis, Drug Resistance, Viral, Enfuvirtide, HIV Envelope Protein gp41 pharmacology, HIV Reverse Transcriptase analysis, Heterocyclic Compounds pharmacology, Humans, Maraviroc, Peptide Fragments pharmacology, Pyrrolidinones pharmacology, RNA, Viral analysis, Raltegravir Potassium, Receptors, CCR5 metabolism, Receptors, CXCR4 metabolism, Cyclohexanes pharmacology, HIV Fusion Inhibitors pharmacology, HIV-1 drug effects, Triazoles pharmacology, Viral Load drug effects, Virus Internalization drug effects
- Abstract
HIV entry inhibitors, such as maraviroc (MVC), prevent cell-free viruses from entering the cells. In clinical trials, patients who were treated with MVC often displayed viral loads that were above the limit of conventional viral load detection compared to efavirenz-based regimens. We hypothesize that viruses blocked by entry inhibitors may be redistributed to plasma, where they artificially increase viral load measurements compared to those with the use of antiretroviral drugs (ARVs) that act intracellularly. We infected PM-1 cells with CCR5-tropic HIV-1 BaL or CXCR4-tropic HIV-1 NL4-3 in the presence of inhibitory concentrations of efavirenz, raltegravir, enfuvirtide, maraviroc, and AMD3100, the latter three being entry inhibitors. Supernatant viral load, reverse transcriptase enzyme activity, and intracellular nucleic acid levels were measured at times up to 24 h postinfection. Infectivity of redistributed dual-tropic HIV-1 was assessed using TZM-bl cells. Extracellular viral load analysis revealed that entry inhibitor-treated cells had higher levels of virus in the supernatant than the cells treated with other ARVs at 8 h postinfection. By 24 h, the supernatant viral load was still higher for entry inhibitors than other ARVs. We observed a correlation between viral load and the step of entry inhibition. Dual-tropic virus infectivity was undiminished utilizing the CCR5 coreceptor following redistribution by CXCR4 entry inhibition. This in vitro model indicates that entry inhibitors exhibit a redistribution effect unseen with intracellular ARV drugs. Based on these results, the effectiveness of some entry inhibitors may be underestimated if plasma viral load is used as a sole indicator of clinical success.
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- 2012
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15. In vitro resistance profile of the candidate HIV-1 microbicide drug dapivirine.
- Author
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Schader SM, Oliveira M, Ibanescu RI, Moisi D, Colby-Germinario SP, and Wainberg MA
- Subjects
- Adenine analogs & derivatives, Adenine pharmacology, HIV Infections drug therapy, HIV Infections virology, HIV Reverse Transcriptase genetics, HIV-1 enzymology, HIV-1 genetics, HIV-1 isolation & purification, Humans, Microbial Sensitivity Tests, Mutation, Organophosphonates pharmacology, Tenofovir, Anti-HIV Agents pharmacology, Drug Resistance, Viral genetics, HIV-1 drug effects, Pyrimidines pharmacology, Reverse Transcriptase Inhibitors pharmacology
- Abstract
Antiretroviral-based microbicides may offer a means to reduce the sexual transmission of HIV-1. Suboptimal use of a microbicide may, however, lead to the development of drug resistance in users that are already, or become, infected with HIV-1. In such cases, the efficacy of treatments may be compromised since the same (or similar) antiretrovirals used in treatments are being developed as microbicides. To help predict which drug resistance mutations may develop in the context of suboptimal use, HIV-1 primary isolates of different subtypes and different baseline resistance profiles were used to infect primary cells in vitro in the presence of increasing suboptimal concentrations of the two candidate microbicide antiretrovirals dapivirine (DAP) and tenofovir (TFV) alone or in combination. Infections were ongoing for 25 weeks, after which reverse transcriptase genotypes were determined and scrutinized for the presence of any clinically recognized reverse transcriptase drug resistance mutations. Results indicated that suboptimal concentrations of DAP alone facilitated the emergence of common nonnucleoside reverse transcriptase inhibitor resistance mutations, while suboptimal concentrations of DAP plus TFV gave rise to fewer mutations. Suboptimal concentrations of TFV alone did not frequently result in the development of resistance mutations. Sensitivity evaluations for stavudine (d4T), nevirapine (NVP), and lamivudine (3TC) revealed that the selection of resistance as a consequence of suboptimal concentrations of DAP may compromise the potential for NVP to be used in treatment, a finding of potential relevance in developing countries.
- Published
- 2012
- Full Text
- View/download PDF
16. Synergy against drug-resistant HIV-1 with the microbicide antiretrovirals, dapivirine and tenofovir, in combination.
- Author
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Schader SM, Colby-Germinario SP, Schachter JR, Xu H, and Wainberg MA
- Subjects
- Adenine pharmacology, Drug Therapy, Combination, HIV Infections genetics, HIV-1 genetics, Humans, Tenofovir, Adenine analogs & derivatives, Drug Resistance, Viral drug effects, HIV Infections virology, HIV-1 drug effects, Organophosphonates pharmacology, Pyrimidines pharmacology, Reverse Transcriptase Inhibitors pharmacology
- Abstract
Objective: To evaluate the candidate antiretroviral microbicide compounds, dapivirine (DAP) and tenofovir (TFV), alone and in combination against the transmission of wild-type and nonnucleoside reverse transcriptase inhibitor (NNRTI)-resistant HIV-1 from different subtypes., Design and Methods: We determined single-drug efficacy of the RTIs, DAP and TFV, against subtype B and non-B wild-type and NNRTI-resistant HIV-1 in vitro. To assess breadth of activity, compounds were tested alone and in combination against wild-type and NNRTI-resistant subtype C primary HIV-1 isolates and complimentary clonal HIV-1 from subtypes B, C and CRF02_AG to control for viral variation. Early infection was quantified by counting light units emitted from TZM-bl cells less than 48-h postinfection. Combination ratios were based on drug inhibitory concentrations (IC(50)s) and combined effects were determined by calculating combination indices., Results: Both candidate microbicide antiretrovirals demonstrated potent anti-NNRTI-resistant HIV-1 activity in vitro, albeit the combination protected better than the single-drug treatments. Of particular interest, the DAP with TFV combination exhibited synergy (50% combination index, CI(50) = 0.567) against subtype C NNRTI-resistant HIV-1, whereas additivity (CI(50) = 0.987) was observed against the wild-type counterpart from the same patient. The effect was not compounded by the presence of subdominant viral fractions, as experiments using complimentary clonal subtype C wild-type (CI(50) = 0.968) and NNRTI-resistant (CI(50) = 0.672) HIV-1, in lieu of the patient quasispecies, gave similar results., Conclusion: This study supports the notion that antiretroviral drug combinations may retain antiviral activity against some drug-resistant HIV-1 despite subtype classification and quasispecies diversity.
- Published
- 2011
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17. Antiretroviral protease inhibitors prevent l6 muscle cell fusion by reducing calpain activity.
- Author
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Colby-Germinario SP, Chalifour LE, Antonecchia A, and Germinario RJ
- Subjects
- Animals, Cell Line, Cells, Cultured, Mice, Muscle Cells enzymology, Myoblasts cytology, Myoblasts drug effects, Rats, Calpain metabolism, Cell Differentiation drug effects, HIV Protease Inhibitors pharmacology, Indinavir pharmacology, Muscle Cells cytology, Ritonavir pharmacology
- Abstract
The antiretroviral protease inhibitors indinavir (IDV) and ritonavir (RTV) are used in highly active antiretroviral therapies (HAART). Side effects from long-term HAART therapy include loss of muscle mass. Myoblasts when cultured in media low in growth factors withdraw from the cell cycle, express muscle-specific differentiation inducers and proteins, and fuse to form myotubes. The neutral protease, calpain, is required for myotube formation and RTV decreased calpain activity in vitro. We found lower calpain activity, but not protein, in homogenates of RTV-treated L6 cells than in control cultures. Importantly, L6 and C2C12 myoblasts did not form myotubes when cultured with 10 or 20 microM IDV or RTV. Control and drug-related L6 myoblasts showed identical decreases in proliferating cell nuclear antigens expression indicating proliferation arrest. Similarly, muscle differentiation inducers MyoD and myogenin and their downstream target, myosin heavy chain, were expressed at similar levels in control and drug-treated cells. Thus, whereas muscle differentiation was unaffected by protease inhibitors, calpain activity was reduced and myotube formation prevented. We conclude that RTV and IDV reduced myotube formation by reducing calpain activity. Our data suggest that protease inhibitors included in HAART might be directly involved in muscle wasting by reducing muscle remodeling.
- Published
- 2004
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18. The effect of human immunodeficiency virus-1 protease inhibitors on the toxicity of a variety of cells.
- Author
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Germinario RJ and Colby-Germinario SP
- Subjects
- Animals, Cell Differentiation drug effects, Cell Survival drug effects, Dose-Response Relationship, Drug, Humans, Mice, Cell Line drug effects, HIV Protease metabolism, HIV Protease Inhibitors pharmacology, HIV Protease Inhibitors toxicity, HIV-1 metabolism
- Abstract
Protease inhibitors in combination with other antiretroviral drugs have been shown to be efficacious in treating human immunodeficiency virus-1 (HIV-1) infection. The side effects of such a treatment usually involve perturbations of fat metabolism and insulin responsiveness. This has led to a number of studies on the adverse effects of these drugs in vitro. The concentrations of various protease inhibitors used in many of these studies were >20 microM. Although some investigators did address the toxicity of protease inhibitors, no overall effort was made to examine this effect during differentiation of fat or muscle. In this study, we assessed the toxicity of HIV-1 protease inhibitors over a range of concentrations (i.e., 0 to 100 microM) in nondifferentiating (e.g., human fibroblasts, 3T3-L1 preadipocytes, and L6 myoblasts) and differentiated cells (e.g., L6 myotubes). The most toxic protease inhibitor in all cell types was Saquinavir (sqv), whereas the least toxic protease inhibitor was Indinavir (idv). Ritonavir (rtv) and Amprenavir (apv) were more toxic than idv but not quite as toxic as sqv. In 3T3-L1 preadipocytes, treatment with sqv, rtv, and apv resulted in toxicity, whereas idv was not toxic even at the highest concentration used. Indinavir was not toxic to L6 myoblasts or L6 myotubes; however, sqv, rtv, and apv caused toxicity in L6 myoblasts. Saquinavir decreased L6 myotube viability in a dose-dependent manner. Human immunodeficiency virus-1 protease inhibitors were shown to be toxic in a variety of cell types. These effects on human fibroblasts and muscle cells have not been reported previously.
- Published
- 2003
- Full Text
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19. Different Forms of Vanadate on Sugar Transport in Insulin Target and Nontarget Cells.
- Author
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Germinario RJ, Colby-Germinario SP, Posner BI, and Nahm K
- Abstract
The effects of several vanadates (ie, orthovanadate, pervanadate, and two stable peroxovanadium compounds) on basal and insulin-stimulated 2-DG transport in insulin target and nontarget cell lines are reported, herein. In nontarget cells, exposure to vanadates (5 x 10(-6) to 10(-4) mol/L) resulted in 2-DG transport stimulatory responses similar to those observed in 2-DG transport post exposure to 667 nmol/L insulin alone, or insulin in combination with vanadates. In 3T3-L1 adipocytes and L6 myotubes, exposure to a vanadate compound or 67 nmol/L insulin, stimulated 2-DG transport dramatically. Again, this effect on stimulated transport was similar to 2-DG transport post-treatment with the effective vanadates in combination with insulin. While pervanadate or stable peroxovanadates stimulated 2-DG transport at 10(-5) to 10(-6) mol/L, orthovanadate up to 10(-4) mol/L was not effective in stimulating 2-DG transport in any of the cell lines tested. The data indicate that the various peroxovanadates are clearly superior insulin mimetics while a more limited insulin mimesis is observed with orthovanadate over a wide variety of cell types.
- Published
- 2002
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20. Effect of insulin-like growth factor I on HIV type 1 long terminal repeat-driven chloramphenicol acetyltransferase expression.
- Author
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Germinario RJ, Colby-Germinario SP, Acel A, Chandok R, Davison K, Mak J, Kleiman L, Faust E, and Wainberg MA
- Subjects
- Animals, Anti-HIV Agents pharmacology, Benzodiazepines pharmacology, COS Cells, Chloramphenicol O-Acetyltransferase genetics, Gene Products, tat genetics, Gene Products, tat metabolism, Genes, Reporter, HIV Reverse Transcriptase metabolism, HIV-1 enzymology, Humans, Insulin-Like Growth Factor I pharmacology, Interleukin-4 metabolism, Interleukin-4 pharmacology, Jurkat Cells, Parathyroid Hormone-Related Protein, Proteins metabolism, Proteins pharmacology, U937 Cells, tat Gene Products, Human Immunodeficiency Virus, Gene Expression Regulation, Viral drug effects, HIV Long Terminal Repeat genetics, HIV-1 genetics, Insulin-Like Growth Factor I metabolism, Pyrroles
- Abstract
In this study, we have investigated the ability of insulin-like growth factor I (IGF-I) to inhibit HIV long terminal repeat (LTR)-driven gene expression. Using COS 7 cells cotransfected with tat and an HIV LTR linked to a chloramphenicol acetyltransferase (CAT) reporter, we observed that physiological levels of IGF-I (10(-9) M) significantly inhibited CAT expression in a concentration- and time-dependent manner. IGF-I did not inhibit CAT expression in COS 7 cells transfected with pSVCAT, and did not affect CAT expression in the absence of cotransfection with tat. Transfection of HIV-1 proviral DNA into COS 7 cells +/- IGF-I resulted in a significant decrease (p < 0.05) in infectious virion production. Both IGF-I and Ro24-7429 inhibited LTR-driven CAT expression, while TNF-alpha-enhanced CAT expression was not affected by IGF-I. On the other hand, a plasmid encoding parathyroid hormone-related peptide exhibited dramatic additivity of inhibition of CAT expression in COS 7 cells. Finally, we show that in Jurkat or U937 cells cotransfected with HIVLTRCAT/tat, IGF-I significantly inhibited CAT expression. Further, interleukin 4 showed in U937 cells inhibition of CAT expression that was not additive to IGF-I induced inhibition. Our data demonstrate that IGF-I can specifically inhibit HIVLTRCAT expression. This inhibition may occur at the level of the tat/TAR interaction. Finally, this IGF-I effect is seen in target cell lines and similar paths of inhibition may be involved in the various cell types employed.
- Published
- 1999
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21. Acylation-stimulating protein (ASP) regulates glucose transport in the rat L6 muscle cell line.
- Author
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Tao Y, Cianflone K, Sniderman AD, Colby-Germinario SP, and Germinario RJ
- Subjects
- Animals, Biological Transport, Cell Differentiation, Cell Line, Cell Membrane metabolism, Deoxyglucose metabolism, Glucose Transporter Type 1, Glucose Transporter Type 3, Glucose Transporter Type 4, Insulin pharmacology, Kinetics, Monosaccharide Transport Proteins metabolism, Muscles cytology, Rats, Blood Proteins pharmacology, Complement C3a analogs & derivatives, Glucose metabolism, Muscle Proteins, Muscles metabolism, Nerve Tissue Proteins
- Abstract
Acylation-stimulating protein (ASP), a human plasma protein, is a potent stimulator of triglyceride synthesis and glucose transport in both human adipocytes and fibroblasts. The purpose of the present in vitro study was to examine the effect of ASP on glucose transport in muscle cells. ASP stimulated 2-deoxy-glucose transport (2-DG) in differentiated rat L6 myotubes in a time (30 min to 24 h) and concentration dependent manner (97% increase). The magnitude of the ASP effect on glucose transport was comparable to the time- and concentration-dependent effects seen with insulin (125% increase), but was additive to insulin, pointing to involvement of differential signalling pathways. ASP stimulation was dependent on cell differentiation in that glucose transport increased by only 12% in myoblasts, comparable to the effect of insulin in myoblasts (15% increase) demonstrating selective responsiveness of the differentiated myotubes to ASP and insulin. The mechanism for the ASP induced increase in glucose transport was also examined. ASP increased the Vmax for 2-DG transport by 183% (4.02 vs. 1.42 nmol/mg cell protein/30 s; ASP vs. Control, respectively). This could be explained by an increased translocation of glucose transporters (GLUT 1, GLUT 4 and GLUT 3) to the plasma membrane surface as demonstrated by Western analysis (+43% P < 0.05, +30% P < 0.05, and +49% P < 0.05, respectively). The effects of ASP were equal to those of insulin (+47%, +26% and +53% for GLUT 1, GLUT 4 and GLUT 3, respectively) and in all cases were paralleled by comparable glucose transport increases under the same incubation conditions. After long-term stimulation (24 h), Western analysis indicated that ASP had a permissive effect on insulin stimulated increases in total GLUT3 and GLUT4 cellular transporter content. These results suggest that muscle is also responsive to ASP and that ASP may play a role in glucose metabolism in both muscle and adipose tissue.
- Published
- 1997
- Full Text
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22. Studies of cellular sensitization to myelin antigens in multiple sclerosis. Dissociation of MIF and LBT production in response to a peptide encephalitogenic in rhesus monkeys.
- Author
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Colby-Germinario SP, Sheremata W, Bain B, and Eylar EH
- Subjects
- Acute Disease, Animals, Guinea Pigs, Humans, Lymphocyte Activation, Lymphocytes immunology, Macrophages immunology, Time Factors, Macrophage Migration-Inhibitory Factors analysis, Multiple Sclerosis immunology, Myelin Basic Protein immunology, Peptides immunology
- Abstract
The macrophage migration inhibitory factor (MIF) assay and the lymphoblastic transformation (LBT) technique were utilized simultaneously to measure immune responses to peptide Y, the 17 amino acid C-terminal fragment of basic myelin protein, in patients with multiple sclerosis (MS). Ten normals and 67 MS patients from the Montreal Neurological Hospital and affiliated institutions were examined. A prospective attempt was made to correlate the measured responses with phasic clinical activity of the disease. The LBT results indicate some degree of cellular sensitization to peptide Y which parallels the clinical course of the illness, and resembles earlier positive findings obtained with the whole basic myelin protein molecule. These findings, however, are in contrast to a negative MIF response to the Y peptide used in the present study and further contrast the positive MIF results obtained earlier using the whole protein. It is not evident from the results of the present study whether sensitization may be of any pathogenetic significance, but the findings show that differing portions of the basic myelin protein molecule may selectively stimulate specific lymphokine elaboration by sensitized lymphocytes.
- Published
- 1977
- Full Text
- View/download PDF
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