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Harmful algal blooms (HABs) are types of phytoplankton overgrowth that adversely affect marine ecosystems and aquaculture resources. One such HAB species, Cochlodinium polykrikoides, occurs irregularly and causes significant damage to the aquaculture industry along the coastal regions of Korea. In this study, we developed and implemented an integrated system to detect and predict HAB occurrences in real time. This system comprises four main components: (1) a real-time detection system utilizing acoustic sensing, ocean weather, water temperature, salinity, and chlorophyll, satellite images, genetic analysis, and optics; (2) a prediction model system based on current and tidal, HAB occurrence, and HAB movement and diffusion models; (3) an additional data based on HAB information of sampling data and HAB information of GPS data, and (4) an integrated information system utilizing data storage servers and a visualization platform. We applied and assessed the efficiency of this integrated system in the South Sea of Korea from 2017 to 2019. Particularly, HABs occurred significantly in 2019, and the system demonstrated the feasibility of detection and prediction under field conditions. Implementing a more advanced integrated detection and prediction system in the field is anticipated to minimize the damage caused by irregular HAB occurrences every year. [ABSTRACT FROM AUTHOR]

Se describe por vez primera la presencia del dinoflagelado potencialmente tóxico, formador de mareas rojas Cochlodiniu polykrikoides (Margalef, 1961) en aguas de la Bahía de Santiago de Cuba, ubicada en la costa suroriental de Cuba durante los meses de mayo y abril del 2005. La especie fue identificada con base en las características morfológicas establecidas mediante el uso de técnicas de microscopía óptica. Las células se presentaron aisladas y en cadenas de 2, 3 y hasta 4 células. El dinoflagelado se obtuvo a partir de una proliferación asociada a mortalidad de juveniles de varias especies (Mujil curema, Opisthonema oglinum, Acanthurus chirurgus, Haemulon spp.) y jaibas (Callinectes sapidus), diez horas después de la aparición de las primeras evidencias de discoloración del agua, manteniéndose durante 96 horas en una extensión total de aproximadamente 0.8 Km 2, distribuida en zonas diferentes de la Bahía de Santiago de Cuba, en concentraciones de 2,5 x 10 10 cél. I -1 y 27 x 1010 cél. I-1; se asocia además a bioluminiscencia nocturna.

Harmful algal blooms (HABs) are types of phytoplankton overgrowth that adversely affect marine ecosystems and aquaculture resources. One such HAB species, Cochlodinium polykrikoides, occurs irregularly and causes significant damage to the aquaculture industry along the coastal regions of Korea. In this study, we developed and implemented an integrated system to detect and predict HAB occurrences in real time. This system comprises four main components: (1) a real-time detection system utilizing acoustic sensing, ocean weather, water temperature, salinity, and chlorophyll, satellite images, genetic analysis, and optics; (2) a prediction model system based on current and tidal, HAB occurrence, and HAB movement and diffusion models; (3) an additional data based on HAB information of sampling data and HAB information of GPS data, and (4) an integrated information system utilizing data storage servers and a visualization platform. We applied and assessed the efficiency of this integrated system in the South Sea of Korea from 2017 to 2019. Particularly, HABs occurred significantly in 2019, and the system demonstrated the feasibility of detection and prediction under field conditions. Implementing a more advanced integrated detection and prediction system in the field is anticipated to minimize the damage caused by irregular HAB occurrences every year.

The occurrence of HABs is known to be affected by multiple environmental factors such as temperature, salinity, nutrients, light, water chemistry, and biological activity. This study aimed to study the possibility of early warning for Cochlodinium polykrikoides blooms in southern Korean waters using qPCR and metabarcoding analysis. We were able to detect C. polykrikoides via a sensitive technique, and confirmed the early warning potential of C. polykrikoides by quantitative PCR. To identify the microbial organisms related to the bloom caused by C. polykrikoides, metabarcoding analysis was conducted using 18 water samples collected from bloom sites in southern Korean waters between 2018 and 2019. Although there was no single group that could explain the successive blooms of C. polykrikoides, four taxa, including Gamma proteobacteria (0.588, p < 0.01), Verrucomicrobia (0.874, p < 0.01), Cyanobacteria (0.975, p < 0.01), and Cryptophyta, were related to C. polykrikoides blooms. When the HABs that occurred were caused by C. polykrikoides, although there were sites where the cells of C. polykrikoides were not detected, similar functions of the microbial communities operated in all southern Korean coastal waters. We identified that the phytoplankton community structure was divided into three or four, using metabarcoding analysis by sampling years. [ABSTRACT FROM AUTHOR]

Biological control using marine bacteria is part of the integrated management to control harmful algal blooms (HABs). The aim of the present study was to investigate the frequency and diversity of bacteria in HAB-exposed regions in Hormozgan province and to evaluate their algicidal activity against Cochlodinium polykrikoides. Seasonal frequency of bacteria in 10 stations throughout the coastal regions of Hormuz Island, Bandar Abbas, and Bandar Lengeh showed maximum frequency in St 1, St 6, and St 10 in spring. We identified 10 bacterial families in sediment samples, which dominantly belonged to Vibrionaceae, Entrobacteriaceae and Pseudomonadaceae with 29%, 14 %, and 12% frequency, respectively. While in seawater samples Entrobacteriaceae and Vibrionaceae were dominated with 23% among 6 identified families. Approximately, 13.33% of sediment-isolated bacteria and 9.09% of seawater-isolated bacteria were able to kill whole algal cells. The extracted metabolites of the active isolates exhibited significant algicidal activity with LC50 values ranging from 90.28±3.14 to 1029±45.94 µg/ml. This study presented an overview of the frequency and diversity of bacteria in the investigated areas and provided eight algicidal isolates for future studies on the biological control of HABs.

Typhoons cause significant environmental damage in coastal areas and one of their effects is the suspension of the resting stage cells of diatoms from the surface sediment. We performed microcosm experiments in 10-L containers using natural sediments from three different sites of southern Korean coastal waters (Geoje, Goheung, and Tongyeong) to simulate the effect of suspension of sediment-based diatoms by a typhoon on blooms of the harmful dinoflagellate Cochlodinium polykrikoides. This dinoflagellate grew well under control conditions and exhibited a maximum abundance of 985 cells mL−1 on day 10, but all treatment groups (Geoje, Goheung, and Tongyeong) had decreased abundances by day 4 and fewer than 50 cells mL−1 on day 10. As C. polykrikoides declined, two diatoms (Skeletonema spp. and Chaetoceros spp.) dominated in the three treatment groups. In particular, these diatoms increased to 2.9 × 104 cells mL−1 on day 5 and 2.3 × 104 cells mL−1 on day 7 in the Geoje group. A multivariate redundancy analysis indicated a negative correlation between the abundances of C. polykrikoides and Chaetoceros spp., and this corresponded to the sharpest decrease of C. polykrikoides in the Geoje group. There were also changes in the bacterial community associated with changes in phytoplankton. During the early phase, when C. polykrikoides was dominant, Rhodobacterales prevailed (> 50%) in all treatment groups, and the proportion of these bacteria in the Geoje group decreased earlier than in the other groups. At the end of the experiment, there was a high proportion of Verrucomicrobiales, suggesting that sediment addition led to changes in the bacterial community. Overall, our microcosm experiments suggest that the significant environmental changes following the passage of a typhoon, especially the suspension and proliferation of sediment-based diatoms, directly affects the bacterial community and decreases blooms of C. polykrikoides. [ABSTRACT FROM AUTHOR]

To better understand the effect of typhoons on the harmful alga Cochlodinium polykrikoides, we investigated cell population dynamics in relation to hydrographic conditions in Korean coastal waters before and after the passage of typhoons. After typhoon Lingling passed through the Yellow Sea, significant accumulation of C. polykrikoides on the southern coast of Namhae Island was associated with southerly winds on September 8, 2019. Similar to field observations of red tide, a particle transport model simulation showed that the virtual particles were greatly influenced by wind-driven currents associated with typhoons, particularly when diel vertical migration was included in the model. However, a bloom of C. polykrikoides disappeared immediately after the passage of typhoon Tapah on September 23, 2019. Because of the different patterns of bloom behavior after the passage of these typhoons, characteristics of other typhoons that affected the Korean peninsula during previous C. polykrikoides blooms were investigated. Analysis of typhoon properties including wind direction, precipitation, and wave height and energy suggested that high wave energy during the passage of a typhoon plays a critical role in the termination of C. polykrikoides blooms, because of its generation of high turbulence relative to other factors. In our study, the wave energy associated with typhoon Tapah (753.6 kJ m−2 over 48 h) was much higher than that associated with typhoon Lingling (441.7 kJ m−2 over 48 h). The results indicate that typhoons have an important role in determining the accumulation and termination of C. polykrikoides blooms through the physical effects of wind direction and wave energy. [ABSTRACT FROM AUTHOR]

Research evaluating the toxicity of the harmful dinoflagellate Cochlodinium (a.k.a. Margalefidinium) polykrikoides has been dominated by acute bioassays while the sublethal effects remain less well understood. This study examined the sublethal effects of C. polykrikoides exposure on the feeding behavior of larval estuarine fish. Sheepshead minnow (Cyprinodon variegatus) larvae were used in feeding experiments which assessed the total consumption of zooplankton prey (i.e., Artemia nauplii) over defined time periods. Larvae exposed to intermediate concentrations (i.e., 102 cells ml−1) of clonal cultures of C. polykrikoides saw statistically significant reductions (range = 10%–81%) in the Artemia consumed compared to controls (i.e., filtered seawater, culture media or nontoxin producing dinoflagellate). These reductions were found independent of whether the larvae were fed or starved prior to experimentation. As these concentrations are similar to those typically found during mild blooms or at the periphery of dense blooms, these findings have significant implications for the feeding behavior of ichthyoplankton. [ABSTRACT FROM AUTHOR]

The marine bacterium, Bacillus sp. SY-1, produced algicidal compounds that are notably active against the bloom-forming alga Cochlodinium polykrikoides. We isolated three algicidal compounds and identified these as mycosubtilins with molecular weights of 1056, 1070, and 1084 (designated MS 1056, 1070, and 1084, respectively), based on amino acid analyses and 1H, 13C, and two-dimensional nuclear magnetic resonance spectroscopy, including 1H-15N heteronuclear multiple bond correlation analysis. MS 1056 contains a β-amino acid residue with an alkyl side chain of C15, which has not previously been seen in known mycosubtilin families. MS 1056, 1070, and 1084 showed algicidal activities against C. polykrikoides with 6-h LC50 values of 2.3 ± 0.4, 0.8 ± 0.2, and 0.6 ± 0.1 μg/ml, respectively. These compounds also showed significant algicidal activities against other harmful algal bloom species. In contrast, MS 1084 showed no significant growth inhibitory effects against other organisms, including bacteria and microalgae, although does inhibit the growth of some fungi and yeasts. These observations imply that the algicidal bacterium Bacillus sp. SY-1 and its algicidal compounds could play an important role in regulating the onset and development of harmful algal blooms in natural environments. [ABSTRACT FROM AUTHOR]

The effect of an electron beam on the toxic microalgae Cochlodiniumpolykrikoides and Alexandrium catenella, which are involved in the phenomenon of seawater blooming known as red tides, has been studied. This annual disaster causes mass intoxication and death of marine life. Electron-beam irradiation at an absorbed dose of to 1 kGy leads to inactivation of more than 2/3 of the microalgae population due to disruption of cell walls, damage to chloroplasts, and cell aggregation. Radiolysis destroys paralytic toxins, including the most dangerous of them. Because of low doses and the ease of irradiation, the electron-beam treatment of water can be a promising method for the inactivation and detoxification of phytoplankton involved in red tides. [ABSTRACT FROM AUTHOR]

Although the life cycle of Margalefidinium polykrikoides, formerly called Cochlodinium polykrikoides, has been described previously, the descriptions on asexual and sexual phases of this species collected from Korean coastal waters are strange and still unclear. We collected the resting cysts of M. polykrikoides from surface sediments and re-examined the germination process, and asexual and sexual life stages, and the mating behavior of the vegetative cells using a microscope equipped with high-resolution time-lapse digital camera. The resting cyst of M. polykrikoides had a distinct germination process; before germination, a mature cell in shape was visible within the resting cyst body, and the cell quickly emerged from the resting cyst. The asexual reproduction and cell chain formation of M. polykrikoides were generated in a slightly oblique direction at the epicone of cell and the chain-forming cells of M. polykrikoides could form the chain-forming temporary cysts without asexual or sexual reproduction. The planozygote produced by gamete fusion of M. polykrikoides may not necessarily develop to resting cysts but instead may divide into vegetative cells occasionally. In this phase, the armored cell, which was previously recorded by Kim et al. (2007), was not observed. The sexuality of M. polykrikoides had a homothallic mating behavior. [ABSTRACT FROM AUTHOR]

Algal bloom as a common phenomenon in the Persian Gulf and the Sea of Oman had catastrophic effects on environmental, social, economic, and human health aspects from 2008 to 2009. Since 2008, the Persian Gulf and the Sea of Oman Ecological Research Institute (PGSOERI) has monitored and managed algal blooms in the Hormuzgan coast along the northern Persian Gulf and the Sea of Oman. Management strategies have included regular monitoring of chlorophyll, water quality, and remote sensing. In this regard, relevant departments and the Regional Organization for Protection of Marine Environment (ROPME) collaborated with each other to prevent and forecast algal blooms. We reviewed historical and current monitoring, mitigation, and management systems of algal blooms in the Hormuzgan coast. In addition, complications and challenges of algal bloom monitoring and management were also discussed. Documenting algal bloom monitoring and research, improving forecasting and modeling of blooms, educating the public and fishermen, developing a cooperative monitoring framework, and controlling pollution input entering the ROPME region are the main challenges of algal bloom management in the Hormuzgan coast. [ABSTRACT FROM AUTHOR]

In this study, the occurrence of Cochlodinium polykrikoides bloom was predicted based on spatial information. The South Sea of Korea (SSK), where C. polykrikoides bloom occurs every year, was divided into three concentrated areas. For each domain, the optimal model configuration was determined by designing a verification experiment with 1–3 convolutional neural network (CNN) layers and 50–300 training times. Finally, we predicted the occurrence of C. polykrikoides bloom based on 3 CNN layers and 300 training times that showed the best results. The experimental results for the three areas showed that the average pixel accuracy was 96.22%, mean accuracy was 91.55%, mean IU was 81.5%, and frequency weighted IU was 84.57%, all of which showed above 80% prediction accuracy, indicating the achievement of appropriate performance. Our results show that the occurrence of C. polykrikoides bloom can be derived from atmosphere and ocean forecast information.

The marine dinoflagellate Margalefidinium polykrikoides is a harmful species that has affected aquaculture, fisheries and tourism activities. It produces reactive oxygen species (ROS) as well as hemolytic and neurotoxic-like substances that have been associated with mass mortalities of marine organisms. It has a tropical and subtropical distribution that has mainly affected Asia and North America. The economic impacts for aquaculture industries have been estimated to be up to US$140M. In Latin America, no economic estimates have been performed. Harmful algal blooms by M. polykrikoides are more frequent in Mexico and Central America. Proliferations of this dinoflagellate are associated with winds, upwelling, convergence areas, local convection of seawater, and eutrophication of coastal areas by nitrogen and phosphorus compounds from rainwater runoff, as well as agricultural and aquaculture activities, into coastal waters. Eco-physiological and toxicological studies have provided detailed descriptions of the growth of algal strains from these regions and the harmful effects on fish and shrimp, as well as the role the production of ROS and polyunsaturated fatty acids in their toxicity. It is also possible that M. polykrikoides has an ecological role in the regulation of blooms of other harmful algae. In this contribution, we review the records of harmful algal blooms of M. polykrikoides in Latin America and the research that has been conducted with this species.

Harmful algal blooms (HABs) of the dinoflagellates Cochlodinium and Alexandrium are known to have serious negative impacts on marine ecosystems and the aquaculture industry. We investigated the appearance and succession patterns of both HAB species in the southern sea of Korea and performed a bioassay using C.polykrikoides and A.affine cultures to evaluate their competitive relationship. From June to August in 2017, the surface water temperature increased from 17.4 °C to 26.8 °C, the salinity decreased from 34.2 to 30.8, and strong stratification developed. The nutrient concentrations remained low in the surface layer and high in the bottom layers. C.polykrikoides dominated in July; however, A.affine reached bloom levels throughout the study area in August. The growth experiments were carried out on each species at six water temperature (15, 20, 22.5, 25, 27.5 and 30 °C) and six salinity (20, 24, 26, 28, 30 and 32) levels. The maximum growth rate for C. polykrikoides (0.31 day−1) was measured at 25 °C and a salinity of 32, and for A. affine (0.43 day−1) at 25 °C and a salinity of 30. At all salinity levels, C. polykrikoides cells died within 2 days when temperature were 30 °C, while A.affine maintained high growth rates (0.35–0.39 day−1). Further, C. polykrikoides is salinity sensitive at the lowest salinity level of 20 in 25 °C and 27 °C, but A. affine did not respond sensitively to changes in salinity. In contrast, A. affine did not grow at low temperature of 15 °C, but C. polykrikoides could survive in high salinity range (26–32). In co-cultivation at a 1:1 cell inoculation ratio, A.affine had a competitive advantage over C. polykrikoides at all temperatures; however, when the inoculation ratios were varied, the species with a higher initial cell density showed a competitive advantage at all temperatures except 30 °C. Combined the field and bioassay results indicated that A. affine may have an advantage over C. polykrikoides under relatively higher temperature and low salinity conditions, which is important when evaluating the species succession and blooms in the southern sea of Korea during summer. • Succession phenomenon from C. polykrikoides to A. affine in Korean coastal area. • Influence of Changjiang diluted water in the southern sea of Korea, during summer in 2017. • A. affine had better environmental tolerance than C. polykrikoides to higher water temperature and lower salinity ranges. [ABSTRACT FROM AUTHOR]

Since the early 1990s, ocean temperatures have increased and blooms of the icthyotoxic dinoflagellate Cochlodinium polykrikoides (a.k.a. Margalefidinium polykrikoides) have become more widespread across the Northern Hemisphere. This study used high-resolution (1–30 km), satellite-based sea surface temperature records since 1982 to model trends in growth and bloom season length for strains of C. polykrikoides inhabiting North American and East Asian coastlines to understand how warming has altered blooms in these regions. Methods provided approximately 180× greater spatial resolution than previous studies of the impacts of warming on harmful algae, providing novel insight into near shore, coastal environments. Along the US East Coast, significant increases in potential growth rates and bloom season length for North American ribotypes were observed with bloom-favourable conditions becoming established earlier and persisting longer from Chesapeake Bay through Cape Cod, areas where blooms have become newly established and/or intensified this century. Within the Sea of Japan, modelled mean potential growth rates and bloom season length of East Asian ribotypes displayed a significant positive correlation with rising sea surface temperatures since 1982, a period during which observed maximal cell densities of C. polykrikoides blooms have significantly increased. Results suggest that warming has contributed, in part, to altering the phenology of C. polykrikoides populations, potentially expanding its realized niche in temperate zones of the Northern Hemisphere. [ABSTRACT FROM AUTHOR]

• Red seabream showed similar survival rates upon C. polykrikoides exposure under LD conditions. • C. polykrikoides significantly inhibited the opercular respiratory rate of red seabream. • C. polykrikoides induced an array of GSH-mediated antioxidant defense responses. • Sublethal concentrations of C. polykrikoides modulated DNA stability in red seabream gill tissues. The ichthyotoxic Cochlodinium polykrikoides is one of the most harmful bloom-forming dinoflagellates. In the present study, the economically important red seabream Pagrus major was exposed to sublethal concentrations of C. polykrikoides (i.e., 1,000 and 3,000 cells mL−1) for 24 h, and the antioxidant defense system and DNA damage dose-specific responses were analyzed during the exposure and additional depuration period (2 h) in the gill tissue. No significant ichthyotoxicity was observed under different light and dark conditions, while significantly lower levels of opercular respiratory rate were measured in the C. polykrikoides -exposed red seabream. Intracellular malondialdehyde (MDA) content increased significantly in the 3,000 cells-exposed gill tissues at 24 h and the increased level was maintained during depuration. Intracellular glutathione (GSH) levels were significantly depleted following exposure to 3,000 cells mL-1 of C. polykrikoides , but the levels increased significantly in the depuration phase. Overall, significantly higher activity of antioxidant defense system enzymes such as catalase (CAT), superoxide dismutase (SOD), glutathione reductase (GR), and glutathione peroxidase (GPx) were observed in the 3,000 cells mL−1-exposed gill tissues at 24 h and during depuration. Analysis of the two reliable DNA damage parameters, Olive tail moment and percent tail DNA, showed significantly elevated levels of DNA damage in the 1,000 and 3,000 cells mL−1-exposed gill tissue. Increases in the activity of the antioxidant defense system and DNA damage may be one of the major mechanisms mediating C. polykrikoides- induced devastation in aquaculture and fisheries. [ABSTRACT FROM AUTHOR]

Global ocean change threatens marine life, yet a mechanistic understanding of how organisms are affected by specific stressors is poorly understood. Here, we identify and compare the unique and common transcriptomic responses of an organism experiencing widespread fisheries declines, Argopecten irradians (bay scallop) exposed to multiple stressors including high pCO2, elevated temperature, and two species of harmful algae, Cochlodinium (aka Margalefidinium) polykrikoides and Aureococcus anophagefferens using high‐throughput sequencing (RNA‐seq). After 48 hr of exposure, scallop transcriptomes revealed distinct expression profiles with larvae exposed to harmful algae (C. polykrikoides and A. anophagefferens) displaying broader responses in terms of significantly and differentially expressed (DE) transcripts (44,922 and 4,973; respectively) than larvae exposed to low pH or elevated temperature (559 and 467; respectively). Patterns of expression between larvae exposed to each harmful algal treatment were, however, strikingly different with larvae exposed to A. anophagefferens displaying large, significant declines in the expression of transcripts (n = 3,615; 87% of DE transcripts) whereas exposure to C. polykrikoides increased the abundance of transcripts, more than all other treatments combined (n = 43,668; 97% of DE transcripts). Larvae exposed to each stressor up‐regulated a common set of 21 genes associated with protein synthesis, cellular metabolism, shell growth, and membrane transport. Larvae exposed to C. polykrikoides displayed large increases in antioxidant‐associated transcripts, whereas acidification‐exposed larvae increased abundance of transcripts associated with shell formation. After 10 days of exposure, each harmful algae caused declines in survival that were significantly greater than all other treatments. Collectively, this study reveals the common and unique transcriptional responses of bivalve larvae to stressors that promote population declines within coastal zones, providing insight into the means by which they promote mortality as well as traits possessed by bay scallops that enable potential resistance. [ABSTRACT FROM AUTHOR]

• Numerical model simulations confirm the locations initiating Cochlodinium polykrikoides blooms in the James River. • A simplified mathematical model using ϕ index highlights the role of transport processes in estuarine HAB initiation. • Critical time required for HAB initiation is inversely proportional to relative growth rate. • HABs tend to initiate in locations with relatively large ratios of residence time to volume. • Multiple HAB originating locations can co-exist in an estuary. The effects of physical transport processes on the initiation of harmful algal blooms (HABs) in estuaries were investigated through both mathematical model analysis and numerical model experiments. This study highlights the influence of the flushing effect due to physical transport processes on the location of bloom initiation, which is comparable to or even more important than local processes. The theoretical analysis suggests that the differential flushing effect at different waterbodies due to complex geometry is one of the dominant factors causing inhomogeneous distribution of algal density during HAB initiation. The ratio of residence time to volume is one of the key variables that determine the differential timing of HAB occurrence in estuary-subestuary systems with multiple interconnected waterbodies. As a result, a HAB tends to be observed first in those locations with relatively long residence time and small waterbodies, such as tributaries or areas with large eddies. Multiple unconnected originating locations can co-exist within an estuary. Two three-dimensional model experiments with realistic forcings were conducted to demonstrate the flushing effect on annual Cochlodinium polykrikoides bloom in the lower James River. The results show that while the environmental conditions that affect local processes, such as salinity and temperature, are important in determining the originating locations of HABs, the differential flushing effect is the dominant factor driving the spatial difference in the density of C. polykrikoides in this region during the bloom initiation. This explains why the occurrence of the first bloom in this region is frequently observed in the Lafayette River, a relatively small waterbody with long residence time. Because of the relatively low growth rate of C. polykrikoides and because of the high water-exchange between the mainstem and tributaries of the James River, initial cyst distribution is suggested to have a relatively small impact on originating locations of the bloom compared to flushing effect and salinity, and the HAB originating locations do not have to be in the waterbody with abundant cysts. [ABSTRACT FROM AUTHOR]

Blooms of the dinoflagellate, Cochlodinium (a.k.a.Margalefidinium) polykrikoides, have had deleterious effects on marine life across the Northern Hemisphere and, since the early 1990s, have become more frequent and widespread. While the toxic effects of C. polykrikoides have been well-described for finfish, the effects on bivalve molluscs are poorly understood, particularly in ecosystem and aquaculture settings. The purpose of this study was to characterize the comparative effects of C. polykrikoides blooms on North Atlantic bivalves and to identify the environmental factors that influence its toxic effects. The growth and survival of two age-classes (first- and second-year) of the northern quahog (Mercenaria mercenaria), the bay scallop (Argopecten irradians), and the eastern oyster (Crassostrea virginica) were quantified in surface deployments and at depth during annual bloom events in multiple locations across eastern Long Island (NY, USA), capturing a natural gradient in C. polykrikoides. In two consecutive years, scallops deployed within surface locations experienced significant mortality (75-100%) during short-term (1-2 weeks) but intense (> 1.5 × 104 cells mL−1) C. polykrikoides blooms. Conversely, scallops deployed at depth and clams and oysters deployed at either the surface or at depth were more resistant to blooms. First-year oysters and scallops that survived blooms displayed significant reductions in growth rates, while clams and older scallops and oysters did not. Results suggest that blooms of C. polykrikoides pose significant age- and species-specific threats to native and cultured bivalve shellfish and that shellfish deployed in surface waters are at greater risk during blooms than those deployed at depth. [ABSTRACT FROM AUTHOR]

Blooms of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides are responsible for massive fish mortality events in Korean coastal waters (KCW). They have been consistently present in southern KCW over the last two decades, but they were not observed in 2016, unlike in the previous years. Despite extensive studies, the cause of this absence of this dinoflagellate bloom remains largely unknown. Thus, we compared physico-chemical and biological data from along the Tongyeong coast between 2016 and the previous four years (2012–2015). The averages of water temperature and salinity in August, 2016 were significantly (p < 0.001) different from those in the previous years. The amount of Changjiang River discharge, which can affect the environmental conditions in the southern Korean coastal area via ocean currents, was larger than in the previous years, resulting in a reduction in the salinity level in August when blooms of C. polykrikoides usually occurred. Moreover, compared to previous years, in 2016, there was a weak expansion of C. polykrikoides blooms in the Goheung-Oenarodo area where C. polykrikoides blooms were annually initiated in KCW. Lastly, the strong winds from the typhoon Lionrock may also have contributed to the early termination of this dinoflagellate bloom. Together with these findings, the combination of these environmental conditions in 2016, unlike in previous years, may have inhibited the formation of C. polykrikoides blooms along the Tongyeong coast.

The monitoring of the harmful bloom of Cochlodinium polykrikoides in the northern Persian Gulf was studied during 2010 to 2011. The results revealed that in the waters of Hormozgan Province, the Diatoms and Dinoflgellates had the highest frequency. No significant difference was found for amount of nutrients in three sub- regions. The bloom of C. polykrikoides was higher in central sub-region in spring and was occurred in the eastern sub-region in summer, but no mortality of fishes was recorded. In Bushehr Province, four classes of Bacillaryophyceae, Cyanophyceae, Dynophyceae and Prymnesiophyceae were determined. Furthermore significant different values of nutrients were recorded. In waters of Khuzestan Province, different values of NH4 were measured for different months. In total, the measured ratio of N: P in all months were lower than Redfield Ratio (16:1) in which subsequently the environmental condition was not suitable for bloom of C. polykrikoides.

Metacaspases (MCAs) are cysteine proteases that share sequence homology with caspases, and may play roles in programmed cell death (PCD). In the present study, we identified a novel MCA gene ( CpMCA ) from the red tide dinoflagellate Cochlodinium polykrikoides , and examined its molecular characteristics and gene expression in response to algicide-induced cell death. CpMCA cDNA is 1164 bp in length, containing a dinoflagellate spliced leader sequence (dinoSL), an 879-bp open reading frame (ORF), which codes for a 293-aa protein, and a poly (A) tail. Multi-sequence comparison indicated that CpMCA belongs to type I MCA, but it has a different structure at the N-terminal. Phylogenetic analysis showed that C. polykrikoides may have acquired the MCA gene from bacteria by means of horizontal gene transfer (HGT). In addition, expressions of CpMCA significantly increased following exposure to the common algicides copper sulfate and oxidizing chlorine, which trigger cell death in dinoflagellates, suggesting that CpMCA may be involved in cell death. [ABSTRACT FROM AUTHOR]

Accurate and timely quantification of widespread harmful algal bloom (HAB) distribution is crucial to respond to the natural disaster, minimize the damage, and assess the environmental impact of the event. Although various remote sensing-based quantification approaches have been proposed for HAB since the advent of the ocean color satellite sensor, there have been no algorithms that were validated with in-situ quantitative measurements for the red tide occurring in the Korean seas. Furthermore, since the geostationary ocean color imager (GOCI) became available in June 2010, an algorithm that exploits its unprecedented observation frequency (every hour during the daytime) has been highly demanded to better track the changes in spatial distribution of red tide. This study developed a novel red tide quantification algorithm for GOCI that can estimate hourly chlorophyll-a ( Chl a) concentration of Cochlodinium (Margalefidinium) polykrikoides , one of the major red tide species around Korean seas. The developed algorithm has been validated using in-situ Chl a measurements collected from a cruise campaign conducted in August 2013, when a massive C. polykrikoides bloom devastated Korean coasts. The proposed algorithm produced a high correlation (R 2 = 0.92) with in-situ Chl a measurements with robust performance also for high Chl a concentration (300 mg/m 3 ) in East Sea areas that typically have a relatively low total suspended particle concentration (<0.5 mg/m 3 ). [ABSTRACT FROM AUTHOR]

Although there have been extensive studies on dinoflagellate blooms in recent decades, the mechanism that allows the maintenance of blooms over long periods remains uncertain, and studies on genetically differentiated subpopulations may provide insights into this mechanism. In this study, the influence of two genetically distinct subpopulations of the dinoflagellate Cochlodinium polykrikoides , referred to as Group I and IV, on bloom duration in Korean coastal waters (KCW) was examined using a quantitative PCR (qPCR) assay. In this study, a C. polykrikoides bloom occurred over a longer period in 2009 (49 days), whereas the bloom period was shorter in 2010 (35 days). The qPCR results indicate that intraspecific bloom succession between Groups I and IV occurred in 2009, whereas only a single subpopulation (Group I) was responsible for the bloom in 2010. Based on the statistical analysis, the Group I and Group IV blooms occurred under significantly different environmental conditions ( p   ≤  0.05) in terms of water temperature, pH, and phosphate concentration, and these subpopulations exhibited significantly different relationships with environmental factors, particularly water temperature ( p <  0.01). This variability may allow blooms to continue through intraspecific bloom succession even after environmental conditions change. Southern KCW are affected by outer regions via the Tsushima Warm Current (TWC) every summer. Group IV (≤1108 ± 69 cells L −1 ) was primarily observed along the route of the TWC in summer 2009, when the bloom of this subpopulation occurred in southern KCW. These results suggest that Group IV transported via the TWC may have influenced the bloom dynamics of this subpopulation in summer 2009. [ABSTRACT FROM AUTHOR]

• Chemical disinfectants inactivated and lysed C. polykrikoides in seawater. • Cell inactivation efficacy followed the order O 3 > MnO 4 − > NaOCl > H 2 O 2. • Secondary oxidants produced by O 3 and NaOCl contributed to cell removal. • H 2 O 2 is a suitable disinfectant for field applications with minimal toxicity to fish. For decades, red tide control has been recognized as necessary for mitigating financial damage to fish farms. Chemical disinfectants, frequently used for water disinfection, can reduce the risk of red tides on inland fish farms. This study systematically evaluated four different chemical disinfectants (ozone (O 3), permanganate (MnO 4 −), sodium hypochlorite (NaOCl), and hydrogen peroxide (H 2 O 2)) for their potential use in inland fish farms to control red tides by investigating their (i) inactivation efficacy regarding C. polykrikoides , (ii) total residual oxidant and byproduct formation, and (iii) toxicity to fish. The inactivation efficacy of C. polykrikoides cells by chemical disinfectants from highest to lowest followed the order of O 3 > MnO 4 − > NaOCl > H 2 O 2 for different cell density conditions and disinfectant doses. The O 3 and NaOCl treatments generated bromate as an oxidation byproduct by reacting with bromide ions in seawater. The acute toxicity tests of the disinfectants for juvenile red sea bream (Pagrus major) showed that 72-h LC 50 values were 1.35 (estimated), 0.39, 1.32, and 102.61 mg/L for O 3 , MnO 4 −, NaOCl, and H 2 O 2 , respectively. Considering the inactivation efficacy, exposure time of residual oxidants, byproduct formation, and toxicity toward fish, H 2 O 2 is suggested as the most practical disinfectant for controlling red tides in inland fish farms. [Display omitted] [ABSTRACT FROM AUTHOR]

Harmful algal blooms of the dinoflagellate Cochlodinium polykrikoides are of worldwide environmental concern. Previous field studies have demonstrated the association of such algal blooms with free-living bacteria (FLB) and particle-associated bacteria (PAB). In the present study, we report evidence for bacterial association with C. polykrikoides in laboratory culture. Sampling was performed at different growth stages (lag, exponential and stationary) and pyrosequencing was used to identify taxa. As a result, the community structures of FLB and PAB were elucidated and significant differences between FLB and PAB were identified by hierarchical cluster analysis and the similarity profiles test (p = .05). The relative abundances of bacterial operational taxonomic units distinctly changed in response to the different phases of C. polykrikoides growth. The Roseobacter genus Marivita and the Flavobacterium genus Winogradskyella were dominant in the FLB and PAB associated with C. polykrikoides, respectively. The Roseobacter clade, which has also exhibited associations with C. polykrikoides blooms in field samples, may influence host cell growth through the provision of vitamins. [ABSTRACT FROM AUTHOR]

To quantify the abundance of the harmful marine dinoflagellate Cochlodinium polykrikoides in natural seawaters, we developed an innovative procedure based on the droplet digital PCR (ddPCR) with C. polykrikoides-specific primers targeting the internal transcribed spacer (ITS). The abundance of C. polykrikoides was determined through the specific copy number of target DNA per cell in both culture and field samples. The average copy number per C. polykrikoides cell as determined via the ddPCR was 157 with using known cell numbers and a simplified protocol for preparing DNAs. C. polykrikoides cell numbers, in samples collected from different locations, calculated via ddPCR were in agreement with direct cell counts using a microscope. The ddPCR protocol was then used to measure the abundance of C. polykrikoides in nearshore and offshore waters of the southern coast of Korea. Practical application of this method demonstrated its usefulness in reducing time spent on analysis and for increasing estimate accuracy. [ABSTRACT FROM AUTHOR]

While the initiation and development of dense bloom of Cochlodinium polykrikoides have been shown to be related to some environmental factors, little is known about the ecological role of the formation and germination of temporary cysts, nor of their significance for the rapid expansion of dense regional-scale blooms. This study examined the factors affecting the formation and germination of temporary cysts of C. polykrikoides , and provides details about the germination process. In the laboratory experiments, C. polykrikoides produced the chain-forming temporary cysts that are immobile and surrounded by a hyaline membrane. The encystment experiment indicated that darkness induces the formation of chain-forming temporary cysts, consistent with field observation of morphology and fluxes of temporary cysts. Germination occurred twice from a single four-celled temporary cysts within 24 h after exposure to light, and the germlings appeared as two-celled chain-forming vegetative cells. The germination behavior of temporary cysts of C. polykrikoides differs from that of other dinoflagellates, and this may be a survival strategy for the maintenance of population size during dense blooms. [ABSTRACT FROM AUTHOR]

The inactivation of C. polykrikoides , a red tide dinoflagellate, by ozonation was investigated in seawater by monitoring numbers of viable and total cells. Parameters affecting the inactivation efficacy of C. polykrikoides such as the ozone dose, initial cell concentration, pH, and temperature were examined. The viable cell number rapidly decreased in the initial stage of the reaction (mostly in 1–2 min), whereas the decrease in total cell number was relatively slow and steady. Increasing ozone dose and decreasing initial cell concentration increased the inactivation efficacy of C. polykrikoides , while increasing pH and temperature decreased the cell inactivation efficacy. The addition of humic acid (a promoter for the ozone decomposition) inhibited the inactivation of C. polykrikoides , whereas bicarbonate ion (an inhibitor for the ozone decomposition) accelerated the C. polykrikoides inactivation. Observations regarding the effects of pH, temperature, humic acid, and bicarbonate ion collectively indicate that the inactivation of C. polykrikoides by ozonation is mainly attributed to oxidative cell damages by molecular ozone, rather than by hydroxyl radical, produced during the ozone decomposition. At high ozone dose (e.g., 5 mg/L), hypobromous acid formed by the reaction of bromide with ozone may partially contribute to cell inactivation. The use of ozone of less than 1 mg/L produced 0.75–2.03 μg/L bromate. [ABSTRACT FROM AUTHOR]

Harmful algal blooms (HABs) caused by dinoflagellates can be detrimental to aquaculture and fisheries. However, little is known regarding their ichthyotoxic effects on fish, particularly after chronic exposure to sublethal levels. In this study, significant modulations in physiology, immunity, antioxidant components, and hepatic indicators owing to non-toxin–producing dinoflagellate strains (Alexandrium affine and Cochlodinium polykrikoides) were analyzed in juvenile red seabream, Pagrus major , exposed to sublethal concentrations (0, 1, and 100 cells mL−1) for 60 days. At 60 days, higher mortality was induced by A. affine than by C. polykrikoides. Significant increases in respiration rate and plasma cortisol were observed in red seabream exposed to 100 cells mL−1 of the two dinoflagellates. Intracellular reactive oxygen species and malondialdehyde levels were significantly elevated in the gill and liver tissues in response to 100 cells mL−1 of either dinoflagellate. Immunity parameters such as alternative complement activity, lysozyme activity, and total immunoglobulin content were significantly decreased during exposure to 100 cells mL−1 of the two dinoflagellates. Although no significant change was observed in the gonadosomatic index, the hepatosomatic index was significantly decreased by exposure to 100 cells mL−1 of the two dinoflagellates on day 60. The significant decrease in enzymatic activities of ethoxyresorufin-O-deethylase, alanine aminotransferase, aspartate aminotransferase, and alkaline phosphatase upon exposure to 100 cells mL−1 of either dinoflagellate suggested impaired hepatic function through prolonged exposure. Our results suggest that consistent exposure to sublethal concentrations of HAB-forming dinoflagellates is detrimental to fish physiology and biochemical defenses. [Display omitted] • The first report on chronic effects of Alexandrium affine and Cochlodinium polykrikoides in red seabream • Environmental concentrations reduced respiration rate and induced plasma cortisol level. • Strong oxidative stress and immunosuppression were observed in gill and liver tissues. • Significantly reduced hepatosomatic index with failure in hepatic function was observed. [ABSTRACT FROM AUTHOR]

Se analizaron las proliferaciones algales ocurridas en Bahía de Banderas, México, durante los años 2000 y 2001 a partir de información derivada del sensor de color del océano SeaWiFS. Estos eventos estuvieron relacionados con los máximos niveles de Anomalías Semanales de Clorofila’ (As i; variable construida para analizar la variación temporal de la clorofila dentro de la bahía). Las proliferaciones ocurridas en los periodos invierno-primavera fueron multiespecíficos, mientras que en verano-otoño fueron dominadas por una sola especie. Se plantean dos propuestas: 1) las proliferaciones algales de invierno-primavera están fuertemente relacionadas a procesos de mesoescala dada su aparente sincronía temporal con altos niveles de clorofila en las costas de Sinaloa a Jalisco; 2) mientras que las proliferaciones de Cochlodinium polykrikoides durante los periodos verano-otoño son favorecidas por el efecto de otras proliferaciones algales previas sobre el ecosistema y por condiciones predominantemente locales en la bahía.Algal blooms at Banderas Bay, México (2000-2001), from SeaWiFS-sensor-data. Algal blooms for the period of 2000 and 2001 at Banderas Bay, México, were analyzed from SeaWiFS-ocean-color-sensor derived information. These events were related with the maximum chlorophyll week anomalies (ASi; a proxy variable constructed for the analysis of chlorophyll temporal variation in the bay). The winter-spring blooms were multispecific, while the summer-fall blooms were monospecific. Two proposals are made: 1) Winter-spring blooms are strongly related with mesoescale processes, due to their apparent temporal synchrony with the high chlorophyll levels in the coastal region from Sinaloa to Jalisco states; 2) Cochlodinium polykrikoides (Margalef 1961) blooms during the summer-fall periods could be induced by local conditions and the influence of previous events on the ecosystem. Rev. Biol. Trop. 56 (4): 1653-1664. Epub 2008 December 12.

• HABs are a crucial ecological issue in coastal waters worldwide. • C. polykrikoides exerts pressure on nutritional resources. • C. polykrikoides release organic polymeric substances beneficial to bacteria. • DIN supply from C. polykrikoides relies on bacteria to remineralise organic matter. • HABs can be closely associated with host-specific bacteria. To understand the co-variance between common free-living bacteria and Cochlodinium polykrikoides harmful algal blooms (HABs) and their metabolic functions, we investigated 110 sampling sites in the Southern Sea of South Korea. These sampling sites were divided into three groups based on environmental factors and phytoplankton data with a similarity of 85% using non-metric multidimensional scaling. One group represented high-severity C. polykrikoides blooms, while the other two represented low-severity or no blooms. In high-severity HABs, inorganic phosphorous and dissolved organic carbon concentrations were strongly correlated with C. polykrikoides density (p < 0.01). This may reflect the changes in biochemical cycling due to inorganic and organic substrates released by HAB cells (or by cell destruction). Furthermore, 88 common bacterial operational taxonomic units (OTUs, with mean relative abundance > 1%) were identified. These included Gammaproteobacteria (36 OTUs), Flavobacteriia (24), Alphaproteobacteria (18), and other taxa (11). When C. polykrikoides blooms intensified, the relative abundances of Gammaproteobacteria also increased. OTU #030 (Flavicella sp., Flavobacteria, 96%) was positively correlated with C. polykrikoides abundance (r = 0.77, p < 0.001). Functional analysis based on the dominant bacterial OTUs revealed that chemoheterotrophy-related functions were more common in high-severity sites of HABs than in other groups. Therefore, the occurrence of HABs highlighted their interactions with bacteria and affected the bacterial community structure and metabolic functions. [ABSTRACT FROM AUTHOR]

Morphological observations have confirmed that cysts are produced by dinoflagellates. However, finding a seed bed or unknown cysts in field samples by microscopy is extremely time consuming. Real-time PCR has been used to facilitate the detection of dinoflagellate cysts in sediment. However, DNA from dead vegetative cells remaining on the surface sediment may persist for a long period of time, which can cause false positive DNA detection. In this study, a non-quantitative RNA targeted probe using real-time RT-PCR was developed for detection of viable cysts in sediment. Large-subunit rRNA was used to develop a species-specific RNA targeted probe for the ichthyotoxic dinoflagellate Cochlodinium polykrikoides . The sediment samples were sieved and incubated at 30 °C for 3 h prior to RNA extraction to remove RNA from dead cells remaining in the sediment. Nested-PCR was conducted to maximize assay sensitivity. A field survey to determine the distribution of cysts at 155 sampling stations in the western and southern part of the Korean peninsula showed that C. polykrikoides cysts were detected at five sampling stations. [ABSTRACT FROM AUTHOR]

Cochlodinium polykrikoides is a red-tide forming dinoflagellate that causes significant worldwide impacts on aquaculture industries and the marine ecosystem. There have been extensive studies on managing and preventing C. polykrikoides blooms, but it has been difficult to identify an effective method to control the bloom development. There is also limited genome information on the molecular mechanisms involved in its various ecophysiology and metabolism processes. Thus, comprehensive genome information is required to better understand harmful algal blooms caused by C. polykrikoides. We estimated the C. polykrikoides genome size using flow cytometry, with detection of the fluorescence of DNA stained with propidium iodide (PI). The nuclear genome size of C. polykrikoides was 100.97 Gb, as calculated by comparing its mean fluorescence intensity (MFI) to the MFI of Mus musculus, which is 2.8 Gb. The exceptionally large genome size of C. polykrikoides might indicate its complex physiological and metabolic characteristics. Our optimized protocol for estimating the nuclear genome size of a dinoflagellate using flow cytometry with PI can be applied in studies of other marine organisms. [ABSTRACT FROM AUTHOR]

An anomalously large Harmful Algal Bloom (HAB) was observed in the southwest coast of the East/Japan Sea (hereafter the East Sea) during the summer of 2013. During this time period, the presence of Cochlodinium polykrikoides ( C. polykrikoides ) was detected by the Geostationary Ocean Color Imager (GOCI) and validated by in-situ observations. GOCI observations have been available since 2011, thus allowingto examine various stages of the physical condition of the developing C. polykrikoides bloom, thereby other multi-satellite and buoy measurements obtained between 2011 and 2013. Research results indicate that this HAB is related to four processes: the transport of C. polykrikoides from the south coast of Korea to the HAB area; a relatively high insolation; continuous coastal upwelling; and a favorable Sea Surface Temperature (SST) for C.polykrikoide growth. In examination of the main transport mechanisms, geostrophic current measurements were used to estimate the flow trajectories, showing water from the south coast to the HAB area off the southeast coast of Korea. Result shows that ninety percent of the water from the south coast reached the HAB area in 2013. Furthermore, to examine the insolation mechanism, the Photosynthetically available radiation (PAR) value was derived from the Moderate Resolution Imaging Spectoradiometer (MODIS), showing that PAR values were relatively high in the HAB area during HAB period (47 Ein m −1 day −1 ). Moreover, Upwelling age (UA) was calculated in order to investigate the strength of coastal upwelling events, which were found to support relatively high UA values during the HAB period. The mean UA value during the HAB period was 1.01, higher than those in 2011 and 2012 which were 0.61 and 0.76, respectively. Finally, SST in the HAB area was also analyzed to examine which conditions were most favorable for HAB growth. Therefore, the results of this study suggest that the four mechanisms can explain the relative contributions of the anomalously HAB development observed off the southeast coast of Korea. [ABSTRACT FROM AUTHOR]

Cochlodinium polykrikoides is a notoriously harmful algal species that inflicts severe damage on the aquacultures of the coastal seas of Korea and Japan. Information on their expected movement tracks and boundaries of influence is very useful and important for the effective establishment of a reduction plan. In general, the information is supported by a red-tide (a.k.a algal bloom) model. The performance of the model is highly dependent on the accuracy of parameters, which are the coefficients of functions approximating the biological growth and loss patterns of the C. polykrikoides. These parameters have been estimated using the bioassay data composed of growth-limiting factor and net growth rate value pairs. In the case of the C. polykrikoides, the parameters are different from each other in accordance with the used data because the bioassay data are sufficient compared to the other algal species. The parameters estimated by one specific dataset can be viewed as locally-optimized because they are adjusted only by that dataset. In cases where the other one data set is used, the estimation error might be considerable. In this study, the parameters are estimated by all available data sets without the use of only one specific data set and thus can be considered globally optimized. The cost function for the optimization is defined as the integrated mean squared estimation error, i.e., the difference between the values of the experimental and estimated rates. Based on quantitative error analysis, the root-mean squared errors of the global parameters show smaller values, approximately 25%-50%, than the values of the local parameters. In addition, bias is removed completely in the case of the globally estimated parameters. The parameter sets can be used as the reference default values of a red-tide model because they are optimal and representative. However, additional tuning of the parameters using the in-situ monitoring data is highly required. As opposed to the bioassay data, it is necessary because the bioassay data have limitations in terms of the in-situ coastal conditions. [ABSTRACT FROM AUTHOR]

Background: Harmful algal blooms (HABs) caused by the dinoflagellate Cochlodinium polykrikoides lead to severe environmental impacts in oceans worldwide followed by huge economic losses. Algicide agent copper sulfate (CuSO4) is regard as an economical and effective agent for HABs mitigation; its biochemical and physiological effects were revealed in C. polykrikoides. However, molecular mechanisms of CuSO4 effect on the C. polykrikoides, even other HAB species, have not been investigated. The present study investigated the transcriptional response of C. polykrikoides against CuSO4 treatments, with the aim of providing certain molecular mechanism of CuSO4 effect on the C. polykrikoides blooms. Results: RNA-seq generated 173 million reads, which were further assembled to 191,212 contigs. 43.3 %, 33.9 %, and 15.6 % of contigs were annotated with NCBI NR, GO, and KEGG database, respectively. Transcriptomic analysis revealed 20.6 % differential expressed contigs, which grouped into 8 clusters according to K-means clustering analysis, responding to CuSO4; 848 contigs were up-regulated and 746 contigs were down-regulated more than 2-fold changes from 12 h to 48 h exposure. KEGG pathway analysis of eukaryotic homologous genes revealed the differentially expressed genes (DEGs) were involved in diverse pathway; amongst, the genes involved in the translation, spliceosome, and/or signal transduction genes were highly regulated. Most of photosystem related genes were down-regulated and most of mitochondria related genes were up-regulated. In addition, the genes involved in the copper ion binding or transporting and antioxidant systems were identified. Measurement of chlorophyll fluorescence showed that photosynthesis was significantly inhibited by CuSO4 exposure. Conclusions: This study reported the first transcriptome of the C. polykrikoides. The widely differential expressed photosystem genes suggested photosynthetic machinery were severely affected, and may further contribute to the cell death. Furthermore, gene translation and transcription processes may be disrupted, inhibiting cell growth and proliferation, and possibly accelerating cell death. However, antioxidant systems resistant to CuSO4 caused stress; mitochondrion may compensate for photosynthesis efficiency decreasing caused energy deficiency. In addition, various signal transduction pathways may be involved in the CuSO4 induced regulation network in the C. polykrikoides. These data provide the potential transcriptomic mechanism to explain the algicide CuSO4 effect on the harmful dinoflagellate C. polykrikoides. [ABSTRACT FROM AUTHOR]

Objectives: To detect Cochlodinum polykrikoides in long-term monitoring and high-throughput sampling projects using an integrated sandwich hybridization and nuclease protection assay (NPA-SH). Results: The specificity of the probes was verified with individual and mixed cultures as well as field collection, and the quantity of C. polykrikoides determined by NPA-SH analysis showed a good correlation with that determined by cell-counting with a light microscope. In addition a standard curve for C. polykrikoides was established to represent the correlation between optical absorbance in the NPA-SH assay and cell density. Conclusions: This approach provides an efficient alternative to traditional, morphology-based methods for the rapid identification and quantification of harmful algal species and could be used to monitor phytoplankton in field surveys. [ABSTRACT FROM AUTHOR]

Cochlodinium polykrikoides was the species responsible for the discoloration that occurred between September 15th and 27th , 2000 in a shallow coastal lagoon located in the southern part of the Bahía de La Paz, on the west side of the Gulf of California. Blooms of C. polykrikoides were observed four days after two rainy days with a seawater temperature of 29 to 31°C. Nutrient concentration ranges during the bloom were 0.165- 0.897 µM NO2 +NO3 , 0.16-3.25 µM PO4 , and 1.0-35.36 µM SiO4 . Abundance of C. polykrikoides ranged from 360 x 10³ to 7.05 x 10(6) /cells l-1 . Biomass expressed in terms of chlorophyll a was high, ranging from 2.7 to 56.8 mg/m³ . A typical dinoflagellate pigment profile (chlorophyll a and c, peridinin, diadinoxantin, and beta -carotene) was recorded. In this study, the red tide occurred in front of several fish and shrimp-culture ponds. No PST toxins were found in the samples. However, 180 fish were found dead in the infected fish-pond; the gills were the most affected part. C. polykrikoides is a cyst-forming species that recurs in this area. New blooms were observed in November 2000 and September-November 2001 in the same area. Anthropogenic activities, such as eutrophication caused by water discharge in this shallow lagoon, and nutrient enrichment in the culture ponds, as well as effects from precipitation and wind stress, could have favored the outbreak of this dinoflagellateDurante el desarrollo de una marea roja ocurrida del 15 al 27 de septiembre del año 2000 en la Ensenada de La Paz, B.C.S. se tomaron muestras de agua con una botella Van Dorn para determinar la temperatura, la especie causante y la cantidad de nutrientes y pigmentos fotosintéticos. Se hicieron análisis de toxinas de Cochlodinium polykrikoides, la especie responsable de esta marea roja. La mayoría de los especimenes formaron cadenas de cuatro células y raramente de dos. La abundancia fue de 360 x 10³ a 7.05 x 10(6) /cels l-1 . Los florecimientos de C. polykrikoides ocurrieron cuatro días después de dos días lluviosos; el intervalo de temperatura fue de 29 a 31°C. La concentración de nutrientes registrada durante este fenómeno fue 0.165-0.897 µM NO2 +NO3 , 0.16-3.25 µM PO4 , y 1.0-35.36 µM SiO4 . El perfil pigmentario reveló la presencia de clorofila a y c, peridinina, diadinoxantina, y beta -caroteno. La biomasa total expresada en clorofila a fue alta, oscilando entre 2.7 y 56.8 mg/m³ , mientras que la biomasa de Cochlodinium, expresada en peridinina, varió entre 0.68 y 32.03 mg/m³ . En este estudio, la marea roja se desarrolló cerca de varios estanques de cultivo de peces y camarón. En uno de ellos proliferó C. polykrikoides. Los análisis de toxinas PST fueron negativos; sin embargo, durante el incremento de las proliferaciones algunos estanques fueron alcanzados y murieron 180 peces, principalmente pargos (Lutjanus argentiventis, Pomadasys macracantus). Las branquias fueron las partes más afectadas. En condiciones desfavorables C. polykrikoides forma quistes, lo cual ha provocado su recurrente proliferación en el área, registrándose nuevas proliferaciones en noviembre del 2000 y en septiembre-noviembre del 2001. Actividades antropogénicas como la eutroficación causada por la descarga de aguas residuales y de nutrientes de los estanques de cultivo, pudieran estar favoreciendo la proliferación de este dinoflagelado