208 results on '"Cocherell, Dennis E."'
Search Results
2. Increasing stability of a native freshwater fish assemblage following flow rehabilitation
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Jacinto, Emily, Fangue, Nann A, Cocherell, Dennis E, Kiernan, Joseph D, Moyle, Peter B, and Rypel, Andrew L
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Environmental Sciences ,Ecological Applications ,Ecology ,Biological Sciences ,Rehabilitation ,Life Below Water ,Humans ,Animals ,Ecosystem ,Biodiversity ,Fishes ,Seasons ,Fresh Water ,assemblage structure ,ecosystem stability ,fish conservation ,reconciliation ecology ,stream fishes ,water management ,Agricultural and Veterinary Sciences ,Agricultural ,veterinary and food sciences ,Biological sciences ,Environmental sciences - Abstract
Stream restorations are increasingly critical for managing and recovering freshwater biodiversity in human-dominated landscapes. However, few studies have quantified how rehabilitative actions promulgate through aquatic communities over decades. Here, a long-term dataset is analyzed for fish assemblage change, incorporating data pre- and post-restoration periods, and testing the extent to which native assemblage stability has increased over time. In the late 1950s, a large capacity dam was installed on Putah Creek (Solano County, CA, USA), which altered the natural flow regime, channel structure, geomorphic processes, and overall ecological function. Notably, downstream flows were reduced (especially during summer months) resulting in an aquatic assemblage dominated by warm-water nonnative species, while endemic native species subsisted at low levels as subordinates. A court-mediated Accord was ratified in 2000, providing a more natural flow regime, specifically for native and anadromous fishes in the stream. The richness of nonnative species decreased at every site following the Accord, while the richness of native species increased or stayed constant. At the three most upstream sites, native species richness increased over time and ultimately exceeded nonnative richness. Native assemblage recovery was strongest upriver, closer to flow releases and habitat restoration activities, and decreased longitudinally downstream. Rank-abundance curves through time revealed that, while species evenness was low throughout the study, dominance shifted from nonnative to native species in the upstream sites coincident with rehabilitation efforts. Mean rank shifts decreased following flow rehabilitation; thus the assemblage became increasingly stable over time following flow rehabilitation. Putah Creek's rehabilitation may represent a model for others interested in improving endemic freshwater communities in degraded ecosystems.
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- 2023
3. Captive-reared Delta Smelt (Hypomesus transpacificus) exhibit high survival in natural conditions using in situ enclosures.
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Baerwald, Melinda R, Kwan, Nicole, Pien, Catarina, Auringer, Grace, Carson, Evan W, Cocherell, Dennis E, Ellison, Luke, Fangue, Nann A, Finger, Amanda J, Gille, Daphne A, Hudson, Haley, Hung, Tien-Chieh, Sommer, Ted, Stevenson, Troy, and Schreier, Brian M
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Animals ,Osmeriformes ,Ecosystem ,Rivers ,San Francisco ,Endangered Species ,Life on Land ,General Science & Technology - Abstract
Conservation of endangered fishes commonly includes captive breeding, applied research, and management. Since 1996, a captive breeding program has existed for the federally threatened and California endangered Delta Smelt Hypomesus transpacificus, an osmerid fish endemic to the upper San Francisco Estuary. Although this program serves as a captive refuge population, with experimental releases being initiated to supplement the wild population, it was uncertain how individuals would survive, feed, and maintain condition outside hatchery conditions. We evaluated this and the effects of three enclosure designs (41% open, 63% open, and 63% open with partial outer mesh wrap) on growth, survival, and feeding efficacy of cultured Delta Smelt at two locations (Sacramento River near Rio Vista, CA and in Sacramento River Deepwater Ship Channel) in the wild. Enclosures exposed fish to semi-natural conditions (ambient environmental fluctuations and wild food resources) but prevented escape and predation. After four weeks, survival was high for all enclosure types (94-100%) at both locations. The change in condition and weight was variable between sites, increasing at the first location but decreasing at the second location. Gut content analysis showed that fish consumed wild zooplankton that came into the enclosures. Cumulatively, results show that captive-reared Delta Smelt can survive and forage successfully when housed in enclosures under semi-natural conditions in the wild. When comparing enclosure types, we observed no significant difference in fish weight changes (p = 0.58-0.81 across sites). The success of housing captive-reared Delta Smelt in enclosures in the wild provides preliminary evidence that these fish may be suitable to supplement the wild population in the San Francisco Estuary. Furthermore, these enclosures are a new tool to test the efficacy of habitat management actions or to acclimate fish to wild conditions as a soft release strategy for recently initiated supplementation efforts.
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- 2023
4. Effects of turbidity, temperature and predation cue on the stress response of juvenile delta smelt
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Pasparakis, Christina, Lohroff, Toni, Biefel, Felix, Cocherell, Dennis E, Carson, Evan W, Hung, Tien-Chieh, Connon, Richard E, Fangue, Nann A, and Todgham, Anne E
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Life on Land ,supplementation ,San Francisco Estuary ,delta smelt ,conservation ,climate change ,Environmental Sciences ,Biological Sciences - Abstract
The San Francisco Estuary (SFE) is one of the most degraded ecosystems in the United States, and organisms that inhabit it are exposed to a suite of environmental stressors. The delta smelt (Hypomesus transpacificus), a small semi-anadromous fish endemic to the SFE and considered an indicator species, is close to extinction in the wild. The goal of this study was to investigate how environmental alterations to the SFE, such as reductions in turbidities, higher temperatures and increased prevalence of invasive predators affect the physiology and stress response of juvenile delta smelt. Juvenile delta smelt were exposed to two temperatures (17 and 21°C) and two turbidities (1-2 and 10-11 NTU) for 2 weeks. After the first week of exposure, delta smelt were exposed to a largemouth bass (Micropterus salmoides) predator cue at the same time every day for 7 days. Fish were measured and sampled on the first (acute) and final (chronic) day of exposures to predator cues and later analyzed for whole-body cortisol, glucose, lactate, and protein. Length and mass measurements were used to calculate condition factor of fish in each treatment. Turbidity had the greatest effect on juvenile delta smelt and resulted in reduced cortisol, increased glucose and lactate, and greater condition factor. Elevated temperatures reduced available energy in delta smelt, indicated by lower glucose and total protein, whereas predator cue exposure had negligible effects on their stress response. This is the first study to show reduced cortisol in juvenile delta smelt held in turbid conditions and adds to the growing data that suggest this species performs best in moderate temperatures and turbidities. Multistressor experiments are necessary to understand the capacity of delta smelt to respond to the multivariate and dynamic changes in their natural environment, and results from this study should be considered for management-based conservation efforts.
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- 2023
5. Intraspecific variation among Chinook Salmon populations indicates physiological adaptation to local environmental conditions.
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Zillig, Kenneth W, FitzGerald, Alyssa M, Lusardi, Robert A, Cocherell, Dennis E, and Fangue, Nann A
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Aerobic scope ,CTmax ,coldwater fishes ,growth rate ,local adaptation ,Climate Action ,Environmental Sciences ,Biological Sciences - Abstract
Understanding interpopulation variation is important to predicting species responses to climate change. Recent research has revealed interpopulation variation among several species of Pacific salmonids; however, the environmental drivers of population differences remain elusive. We tested for local adaptation and countergradient variation by assessing interpopulation variation among six populations of fall-run Chinook Salmon from the western United States. Juvenile fish were reared at three temperatures (11, 16 and 20°C), and five physiological metrics were measured (routine and maximum metabolic rate, aerobic scope, growth rate and critical thermal maximum). We then tested associations between these physiological metrics and 15 environmental characteristics (e.g. rearing temperature, latitude, migration distance, etc.). Statistical associations between the five physiological metrics and 15 environmental characteristics supported our hypotheses of local adaptation. Notably, latitude was a poor predictor of population physiology. Instead, our results demonstrate that populations from warmer habitats exhibit higher thermal tolerance (i.e. critical thermal maxima), faster growth when warm acclimated and greater aerobic capacity at high temperatures. Additionally, populations with longer migrations exhibit higher metabolic capacity. However, overall metabolic capacity declined with warm acclimation, indicating that future climate change may reduce metabolic capacity, negatively affecting long-migrating populations. Linking physiological traits to environmental characteristics enables flexible, population-specific management of disparate populations in response to local conditions.
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- 2023
6. Turbidity and temperature effects on growth and gene transcription of threatened juvenile Longfin Smelt (Spirinchus thaleichthys)
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Biefel, Felix, Pasparakis, Christina, Cocherell, Dennis E., Hung, Tien-Chieh, Carson, Evan W., Fangue, Nann A., Geist, Juergen P., Todgham, Anne E., and Connon, Richard E.
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- 2024
- Full Text
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7. The effect of temperature on specific dynamic action of juvenile fall-run Chinook salmon, Oncorhynchus tshawytscha
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Lo, Vanessa K, Martin, Benjamin T, Danner, Eric M, Cocherell, Dennis E, Cech, Joseph J, and Fangue, Nann A
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Biological Sciences ,Environmental Sciences ,Affordable and Clean Energy ,Aerobic scope ,cost of digestion ,fish ,metabolism ,Biological sciences ,Environmental sciences - Abstract
Juvenile fall-run Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Basin experience temporally and spatially heterogenous temperature regimes, between cool upper tributaries and the warm channelized Delta, during freshwater rearing and outmigration. Limited water resources necessitate human management of dam releases, allowing temperature modifications. The objective of this study was to examine the effect of temperature on specific dynamic action (SDA), or the metabolic cost associated with feeding and digestion, which is thought to represent a substantial portion of fish energy budgets. Measuring SDA with respect to absolute aerobic scope (AAS), estimated by the difference between maximum metabolic rate (MMR) and standard metabolic rate (SMR), provides a snapshot of its respective energy allocation. Fish were acclimated to 16°C, raised or lowered to each acute temperature (13°C, 16°C, 19°C, 22°C or 24°C), then fed a meal of commercial pellets weighing 2% of their wet mass. We detected a significant positive effect of temperature on SMR and MMR, but not on AAS. As expected, there was no significant effect of temperature on the total O2 cost of digestion, but unlike other studies, we did not see a significant difference in duration, peak metabolic rate standardized to SMR, time to peak, percent of meal energy utilized, nor the ratio of peak O2 consumption to SMR. Peak O2 consumption represented 10.4-14.5% of AAS leaving a large amount of aerobic capacity available for other activities, and meal energy utilized for digestion ranged from 5.7% to 7.2%, leaving substantial remaining energy to potentially assimilate for growth. Our juvenile fall-run Chinook salmon exhibited thermal stability in their SDA response, which may play a role in maintaining homeostasis of digestive capability in a highly heterogeneous thermal environment where rapid growth is important for successful competition with conspecifics and for avoiding predation.
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- 2022
8. Interpopulation variation in thermal physiology among seasonal runs of Chinook salmon
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Zillig, Kenneth W., Lusardi, Robert A., Cocherell, Dennis E., and Fangue, Nann A.
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Salmon -- Physiological aspects -- Environmental aspects ,Global warming -- Environmental aspects ,Earth sciences - Abstract
Conservation of species facing environmental change requires an understanding of interpopulation physiological variation. However, physiological data are often scarce and therefore pooled across populations and species, erasing potentially important variability between populations. Interpopulation variation in thermal physiology has been observed within the Salmonidae family, although it has not been associated with seasonally distinct migratory phenotypes (i.e., seasonal runs). To resolve whether thermal physiology is associated with life-history strategy, we acclimated four Sacramento River juvenile Chinook salmon (Oncorhynchus tshawytscha) populations (Coleman fall-run, Feather River fall-run, Feather River spring- run, and Sacramento River winter-run) exhibiting different seasonal migratory phenotypes (fall-, spring-, and winter-run), at 11, 16, and 20[degrees]C and assessed variation in growth rate, critical thermal maxima, and temperature-dependent metabolic traits. We identified population differences in the physiological parameters measured and found compelling evidence that the critically endangered and endemic Sacramento River winter-run Chinook population exhibits thermal physiology associated with its early-migration life-history strategy. Acclimation to warm temperatures limited the growth and metabolic capacity of winter-run Chinook salmon, highlighting the risk of future environmental warming to this endemic population. Key words: conservation physiology, ecophysiology, fish, thermal tolerance, metabolism, aerobic scope, climate change, Introduction The role that interpopulation variation plays in successful conservation and management of at-risk species is gaining increasing attention (Gayeski et al. 2018; Waples and Lindley 2018; Zillig et al. [...]
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- 2023
- Full Text
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9. Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity
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Verhille, Christine E, Dabruzzi, Theresa F, Cocherell, Dennis E, Mahardja, Brian, Feyrer, Fred, Foin, Theodore C, Baerwald, Melinda R, and Fangue, Nann A
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Biological Sciences ,Environmental Sciences ,California ,cyprinid ,metabolism ,osmoregulation ,salinity ,splittail ,Biological sciences ,Environmental sciences - Abstract
The Sacramento splittail (Pogonichthys macrolepidotus) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allopatric upstream spawning habitat of the Central Valley (CV) population connects with the sympatric rearing grounds via relatively low salinity waters, whereas the San Pablo (SP) population must pass through the relatively high-salinity Upper SFE to reach its allopatric downstream spawning habitat. We hypothesize that if migration through SFE salinities to SP spawning grounds is more challenging for adult CV than SP splittail, then salinity tolerance, osmoregulatory capacity, and metabolic responses to salinity will differ between populations. Osmoregulatory disturbances, assessed by measuring plasma osmolality and ions, muscle moisture and Na+-K+-ATPase activity after 168 to 336 h at 11‰ salinity, showed evidence for a more robust osmoregulatory capacity in adult SP relative to CV splittail. While both resting and maximum metabolic rates were elevated in SP splittail in response to increased salinity, CV splittail metabolic rates were unaffected by salinity. Further, the calculated difference between resting and maximum metabolic values, aerobic scope, did not differ significantly between populations. Therefore, improved osmoregulation came at a metabolic cost for SP splittail but was not associated with negative impacts on scope for aerobic metabolism. These results suggest that SP splittail may be physiologically adjusted to allow for migration through higher-salinity waters. The trends in interpopulation variation in osmoregulatory and metabolic responses to salinity exposures support our hypothesis of greater salinity-related challenges to adult CV than SP splittail migration and are consistent with our previous findings for juvenile splittail populations, further supporting our recommendation of population-specific management.
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- 2020
10. Survival of a threatened salmon is linked to spatial variability in river conditions
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Hause, Colby L., Singer, Gabriel P., Buchanan, Rebecca A., Cocherell, Dennis E., Fangue, Nann A., and Rypela, Andrew L.
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Salmon -- Protection and preservation -- Environmental aspects ,Ecological restoration -- Environmental aspects ,Earth sciences - Abstract
Extirpation of the Central Valley spring-run Chinook salmon (Oncorhynchus tshawytscha) evolutionary significant unit (ESU) from the San Joaquin River is emblematic of salmonid declines across the western seaboard of the United States. Habitat restoration and fish reintroduction efforts are ongoing, but recent telemetry studies have revealed low outmigration survival of juveniles to the ocean. Previous investigations have focused on modeling survival relative to river discharge and geographic regions, but have largely overlooked the effects of habitat variability. To evaluate the link between environmental conditions and survival of juvenile spring-run Chinook salmon, we combined high spatial resolution habitat mapping approaches with acoustic telemetry along a 150 km section of the San Joaquin River during the spring of 2019. While overall outmigration survival was low (5%), our habitat-based classification scheme described variation in survival of acoustic-tagged smolts better than other candidate models based on geography or distance. Two regional mortality sinks were evident along the longitudinal profile of the river, revealing poor survival in areas that shared warmer temperatures but that diverged in chlorophyll a, fluorescent dissolved organic matter (fDOM), turbidity, and dissolved oxygen levels. These findings demonstrate the value of integrating river habitat classification frameworks to improve our understanding of survival dynamics of imperiled fish populations. Key words: juvenile salmon, migration, habitat, survival, FLAMe La disparition locale de l'unite evolutionnaire significative (UES) du saumon chinook (Oncorhynchus tshawytscha) a migration printaniere de la vallee centrale dans la riviere San Joaquin est representative des declins de salmonides a la grandeur de la cote ouest des Etats-Unis. Si des efforts de restauration d'habitats et de reintroduction de poissons sont en cours, des etudes telemetriques recentes revelent une faible survie des juveniles lors de la devalaison vers l'ocean. Les etudes anterieures se sont axees sur la modelisation de la survie en fonction du debit et de la region geographique, mais n'ont generalement pas considere les effets de la variabilite des habitats. Afin d'evaluer le lien entre les conditions environnementales et la survie des saumons chinooks a migration printaniere juveniles, nous avons jumele des approches de cartographie d'habitats a haute resolution spatiale a la telemetrie acoustique le long d'un troncon de 150 km de la riviere San Joaquin durant le printemps 2019. Si la survie globale durant la devalaison etait faible (5 %), notre schema de classification base sur l'habitat decrit mieux les variations de la survie de saumoneaux dotes d'etiquettes acoustiques que d'autres modeles possibles bases sur la geographie ou la distance. Deux puits de mortalite regionaux sont ressortis le long du profil longitudinal de la riviere, revelant une faible survie dans des secteurs ayant en commun des temperatures elevees, mais dont les valeurs de chlorophylle a, matiere organique dissoute fluorescente (MODf), turbidite et oxygene dissous different. Ces constatations demontrent la pertinence d'integrer des cadres de classification des habitats fluviaux pour ameliorer la comprehension de la dynamique de la survie de populations de poissons menacees. [Traduit par la Redaction] Mots-cles : saumon juvenile, migration, habitat, survie, FLAMe, Introduction Pacific salmon populations native to California, USA have declined throughout the last century, shifting once economically viable runs to critically low numbers (Yoshiyama et al. 1998; Katz et al. [...]
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- 2022
11. Consequences of temperature and temperature variability on swimming activity, group structure, and predation of endangered delta smelt
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Davis, Brittany E, Hansen, Matthew J, Cocherell, Dennis E, Nguyen, Trinh X, Sommer, Ted, Baxter, Randall D, Fangue, Nann A, and Todgham, Anne E
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Life on Land ,behaviour ,fish species ,Hypomesus transpacificus ,predator ,warming ,Environmental Sciences ,Biological Sciences ,Marine Biology & Hydrobiology - Abstract
The effects of water temperature on individual and group movement behaviour in prey fish can affect ecological interactions such as competition and predation, but how variability in temperature influence fish behaviour is less understood. Of particular concern is how increased warming in tidally fluctuating estuaries may impact the native and endangered delta smelt (Hypomesus transpacificus, Osmeridae). To help address this issue, we tested the effects of increased water temperature (fluctuating [17–21°C] and warm [21°C] acclimated treatments) on juvenile delta smelt individual and group behaviour, response to chemical alarm and predator cues, as well as capacity to evade predation. In addition, predation of delta smelt was tested in the presence of a dominant invasive competitor, Mississippi silversides (Menidia beryllina, Atherinopsidae), as well as comparative predation mortality on Mississippi silversides when isolated. After 7 days of increased temperature treatments, delta smelt in the warm treatment increased swimming velocity, decreased turning angle, and altered group structure with larger inter-individual distances compared to fish in the control (17°C) and fluctuating temperature treatments. Following conspecific and predator chemical alarm cues, delta smelt showed anti-predator responses. Control and fluctuating treatment fish responded to conspecific cues with increased swimming speeds, decreased inter-individual distances and near-neighbour distances, and, after 15 min, fish recovered back to baseline behaviours. In contrast, fish in the warm treatment had not recovered after 15 min, and swimming speeds were maintained at roughly 25 cm/s, close to maximum capabilities. Fish in control and fluctuating treatments showed minimal responses to predator cues, whereas delta smelt exposed to warm conditions significantly increased swimming speeds and decreased turning angle. Predation of delta smelt by largemouth bass (Micropterus salmoides, Centrarchidae) was greatest under the warm treatment, correlating with altered behaviours of delta smelt; however, predation of Mississippi silversides was greater than delta smelt, independent of temperature. This study provides novel insight into the group behaviour of delta smelt, their response to predation, and how prolonged exposure to elevated temperature may induce negative individual and group behaviours causing alterations in predator–prey dynamics. This work highlights the importance of testing ecologically realistic temperature fluctuations in experiments as delta smelt had significantly altered responses to elevated temperature, dependent on variability of warming.
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- 2019
12. Applying a simplified energy-budget model to explore the effects of temperature and food availability on the life history of green sturgeon (Acipenser medirostris)
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Hamda, Natnael T, Martin, Benjamin, Poletto, Jamilynn B, Cocherell, Dennis E, Fangue, Nann A, Van Eenennaam, Joel, Mora, Ethan A, and Danner, Eric
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Life on Land ,Energy-budget model ,DEB ,DEBkiss ,Green sturgeon ,Environmental stressors ,Organism-environment interactions ,Ecology - Abstract
In highly regulated systems, like large dammed rivers, conservation legislation requires that systems are managed, in part, to avoid adverse impacts on endangered species. However, multiple endangered species can occur in the same system, and management actions that benefit one species may be detrimental to another species. The current water management strategies in the Sacramento River basin are an example of this conflict. Cold-water releases from Shasta Reservoir during the summer and fall months are aimed at protecting Sacramento River winter-run Chinook (SRWRC) salmon by providing suitable incubation temperatures for their eggs. However, the effects of these regulated water temperature releases on another threatened species, green sturgeon, are less well understood. In this study, we applied a simplified dynamic energy budget (DEB) model (aka DEBkiss) to explore the effect of food limitation and water temperature on the growth rates of green sturgeon. This model captures these effects and able to predict the growth of green sturgeon at different food levels and temperature conditions. We then linked the DEB model with a physically‐based water temperature model. We applied the DEB - water temperature linked model for green sturgeon along with a temperature-dependent egg to fry survival model for SRWRC salmon to quantify the consequences of managing water temperatures to improve salmon eggs survival on the growth rate of green sturgeon. We found that mean temperature-dependent egg-to-fry survival of salmon increased across a modeled environmental gradient from critically dry to wet water year types, while the fractional growth rate of juvenile green sturgeon showed the opposite trend, and decreased as water years transitioned from dry to wet conditions. We also found a non-linear negative correlation between temperature-dependent mean growth rate of green sturgeon and mean temperature-dependent egg-to-fry survival of salmon, which indicated there is a river temperature related trade-off between early growth rate of green sturgeon and embryonic stage survival of salmon. However, the relatively small gains in the growth rate of green sturgeon achieved in years when temperature criteria for SRWRC salmon eggs were not met came at the cost of large reduction in temperature-dependent egg-to-fry survival of salmon. Thus, we concluded the current Sacramento River water-temperature management for the eggs of the endangered SRWRC salmon eggs have a relatively small impact on the growth rate of green sturgeon.
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- 2019
13. Behavioral Response of Juvenile Chinook Salmon to Surgical Implantation of Micro‐acoustic Transmitters
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Singer, Gabriel P, Hansen, Matthew J, Ho, Kristina V, Lee, Katie W, Cocherell, Dennis E, Klimley, A Peter, Rypel, Andrew L, and Fangue, Nann A
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Behavioral and Social Science ,Fisheries Sciences ,Fisheries - Abstract
Acoustic telemetry, a commonly used tool for examining movements and survival of aquatic species, is often applied without a comprehensive understanding of transmitter implantation effects. This can be problematic when the goal of the study is to use telemetry results to make inferences regarding broader populations. Here, we examined juvenile Chinook Salmon Oncorhynchus tshawytscha at varying time intervals after transmitter implantation to assess the behavioral implications of tagging. The following behavioral metrics in response to a novel environment were compared across treatment and control groups: time to emergence from shelter into the open portion of the test arena, rheotactic response, total activity, and rates of exploration. Tagged fish (114–132 mm FL) were tested at 0, 1, or 4 d postsurgery (day-0, day-1, and day-4 groups, respectively), and their behavior was compared to that of similarly handled control fish. Emergence from refuge was the only metric that differed significantly between treatment and control groups. Fish tested on the same day as the surgery were less likely to emerge from the refuge, with only 46% of the day-0 tagged fish emerging compared to 88, 93, and 80% of the day-1, day-4, and control groups, respectively. However, day-0 fish that did emerge from the refuge had rheotactic responses, total activity, and exploration rates similar to those of fish from the other treatment and control groups. This study may have fisheries research and management implications, especially for telemetry studies and monitoring efforts. We encourage researchers using this technology to consider (1) observing a post-transmitter-implantation recovery period of at least 24 h prior to release, adjusting study plans and logistics accordingly; (2) applying sufficient scientific rigor to emerging tagging technology prior to wide-scale adoption; and (3) when possible, conducting concurrent battery life and tag effects studies with any field release of tagged fishes, as differing relationships between fish size, tag size, and tagging techniques may yield variable results.
- Published
- 2019
14. Physiological consequences of rising water salinity for a declining freshwater turtle
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Agha, Mickey, Yanagitsuru, Yuzo R, Fangue, Nann A, Nowakowski, A Justin, Kojima, Laura V, Cech, Joseph J, Riley, Melissa K, Freeman, Janna, Cocherell, Dennis E, and Todd, Brian D
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Biological Sciences ,Ecology ,Climate Action ,Freshwater turtles ,osmoregulation ,salinity ,sea-level rise ,Environmental Sciences ,Biological sciences ,Environmental sciences - Abstract
Sea-level rise, drought and water diversion can all lead to rapid salinization of freshwater habitats, especially in coastal areas. Increased water salinities can in turn alter the geographic distribution and ecology of freshwater species including turtles. The physiological consequences of salinization for freshwater turtles, however, are poorly known. Here, we compared the osmoregulatory response of two geographically separate populations of the freshwater Western Pond Turtle (Actinemys marmorata)-a species declining across its range in western North America-to three constant salinities: 0.4 ppt, 10 ppt and 15 ppt over 2 weeks. We found that turtles from a coastal estuarine marsh population regulated their plasma osmolality at lower levels than their conspecifics from an inland freshwater creek population 45 km away. Plasma osmolalities were consistently lower in estuarine marsh turtles than the freshwater creek turtles over the entire 2-week exposure to 10 ppt and 15 ppt water. Furthermore, estuarine marsh turtles maintained plasma osmolalities within 1 SD of their mean field osmolalities over the 2-week exposure, whereas freshwater creek turtles exceeded their field values within the first few days after exposure to elevated salinities. However, individuals from both populations exhibited body mass loss in 15 ppt water, with significantly greater loss in estuarine turtles. We speculate that the greater ability to osmoregulate by the estuarine marsh turtles may be explained by their reduced feeding and drinking in elevated salinities that was not exhibited by the freshwater creek population. However, due to mass loss in both populations, physiological and behavioural responses exhibited by estuarine marsh turtles may only be effective adaptations for short-term exposures to elevated salinities, such as those from tides and when traversing saline habitats, and are unlikely to be effective for long-term exposure to elevated salinity as is expected under sea-level rise.
- Published
- 2019
15. Sensitivities of an endemic, endangered California smelt and two non-native fishes to serial increases in temperature and salinity: implications for shifting community structure with climate change
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Davis, Brittany E, Cocherell, Dennis E, Sommer, Ted, Baxter, Randall D, Hung, Tien-Chieh, Todgham, Anne E, and Fangue, Nann A
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Life on Land ,Climate Action ,climate change ,Delta Smelt ,Largemouth Bass ,Mississippi Silverside ,salinity ,temperature ,Environmental Sciences ,Biological Sciences - Abstract
In many aquatic systems, native fishes are in decline and the factors responsible are often elusive. In the San Francisco Estuary (SFE) in California, interactions among native and non-native species are key factors contributing to the decline in abundance of endemic, endangered Delta Smelt (Hypomesus transpacificus). Climate change and drought-related stressors are further exacerbating declines. To assess how multiple environmental changes affect the physiology of native Delta Smelt and non-native Mississippi Silverside (Menidia beryllina) and Largemouth Bass (Micropterus salmoides), fishes were exposed to serial exposures of a single stressor (elevated temperature or salinity) followed by two stressors (elevated temperature and salinity) to determine how a single stressor affects the capacity to cope with the addition of a second stressor. Critical thermal maximum (CTMax; a measure of upper temperature tolerance) was determined after 0, 2, 4 and 7 days following single and multiple stressors of elevated temperature (16°C vs. 20°C) and salinity (2.4 vs. 8-12 ppt, depending on species). Under control conditions, non-native fishes had significantly higher CTMax than the native Delta Smelt. An initial temperature or salinity stressor did not negatively affect the ability of any species to tolerate a subsequent multiple stressor. While elevated salinity had little effect on CTMax, a 4°C increase in temperature increased CTMax. Bass experienced an additive effect of increased temperature and salinity on CTMax, such that CTMax further increased under multiple stressors. In addition, Bass demonstrated physiological sensitivity to multiple stressors demonstrated by changes in hematocrit and plasma osmolality, whereas the physiology of Silversides remained unaffected. Non-native Bass and Mississippi Silversides showed consistently higher thermal tolerance limits than the native Delta Smelt, supporting their abundance in warmer SFE habitats. Continued increases in SFE water temperatures predicted with climate change may further impact endangered Delta Smelt populations directly if habitat temperatures exceed thermal limits.
- Published
- 2019
16. Plastic responses to diel thermal variation in juvenile green sturgeon, Acipenser medirostris
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Rodgers, Essie M, Cocherell, Dennis E, Nguyen, Trinh X, Todgham, Anne E, and Fangue, Nann A
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Acclimatization ,Animals ,Female ,Fishes ,Male ,Swimming ,Temperature ,Thermal variability ,Acclimation ,Thermal sensitivity ,Oscillating temperatures ,Thermal performance curves ,Swimming performance ,Biological Sciences ,Physiology - Abstract
Human-induced thermal variability can disrupt energy balance and performance in ectotherms; however, phenotypic plasticity may play a pivotal protective role. Ectotherm performance can be maintained in thermally heterogeneous habitats by reducing the thermal sensitivity of physiological processes and concomitant performance. We examined the capacity of juvenile green sturgeon (Acipenser medirostris) to respond to daily thermal variation. Juveniles (47 days post-hatch) were exposed to either stable (15 ± 0.5 °C) or variable (narrowly variable: 13-17 °C day-1 or widely variable 11-21 °C day-1) thermoperiod treatments, with equivalent mean temperatures (15 ± 0.5 °C), for 21 days. Growth (relative growth rate, % body mass gain), upper thermal tolerance (critical thermal maxima, CTMax) and the thermal sensitivity of swimming performance (critical swimming speed, Ucrit) were assessed in fish from all treatments. Accelerated growth was observed in fish maintained under widely variable temperatures compared to narrowly variable and stable temperatures. No significant variation in CTMax was observed among thermoperiod treatments, suggesting all treatment groups acclimated to the mean temperature rather than daily maximums. The widely variable treatment induced a plastic response in swimming performance, where Ucrit was insensitive to temperature and performance was maintained across a widened thermal breadth. Maximum Ucrit attained was similar among thermoperiod treatments, but performance was maximised at different test temperatures (stable: 4.62 ± 0.44 BL s-1 at 15 °C; narrowly variable: 4.52 ± 0.23 BL s-1 at 21 °C; widely variable: 3.90 ± 0.24 BL s-1 at 11 °C, mean ± s.e.m.). In combination, these findings suggest juvenile A. medirostris are resilient to daily fluctuations in temperature, within the temperature range tested here.
- Published
- 2018
17. Behavioural guidance of Chinook salmon smolts: the variable effects of LED spectral wavelength and strobing frequency
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Hansen, Matthew J, Cocherell, Dennis E, Cooke, Steven J, Patrick, Paul H, Sills, Michael, and Fangue, Nann A
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Zoology ,Biological Sciences ,Affordable and Clean Energy ,Behavioural guidance ,Chinook salmon ,visual ecology ,water diversion ,Environmental Sciences ,Biological sciences ,Environmental sciences - Abstract
Exploiting species-specific behavioural responses of fish to light is an increasingly promising technique to reduce the entrainment or impingement of fish that results from the diversion of water for human activities, such as hydropower or irrigation. Whilst there is some evidence that white light can be an effective deterrent for Chinook salmon smolts, the results have been mixed. There is a need to test the response of fish to different spectra and strobing frequencies to improve deterrent performance. We tested the movement and spatial response of groups of four fish to combinations of light-emitting diode (LED) spectra (red, green, blue and white light) during the day and night, and strobing frequencies (constant and 2Hz) during the day, using innovative LED technology intended as a behavioural guidance device for use in the field. Whilst strobing did not alter fish behaviour when compared to constant light, the red light had a repulsive effect during the day, with fish under this treatment spending significantly less time in the half of the arena closest to the behavioural guidance device compared to both the control and blue light. Importantly, this effect disappeared at night, where there were no differences in movement and space use found between spectra. There was some evidence of a potential attractive response of fish to the blue and green light during the day. Under these light treatments, fish spent the highest amount of time closest to the behavioural guidance device. Further tests manipulating the light intensity in the different spectra are needed to verify the mechanistic determinants of the observed behaviours. Results are discussed in reference to the known spectral sensitivities of the cone and rod photopigments in these fish, and further experiments are suggested to better relate the work to mitigating the effects on fish of infrastructure used for hydropower and irrigation.
- Published
- 2018
18. Unusual aerobic performance at high temperatures in juvenile Chinook salmon, Oncorhynchus tshawytscha.
- Author
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Poletto, Jamilynn B, Cocherell, Dennis E, Baird, Sarah E, Nguyen, Trinh X, Cabrera-Stagno, Valentina, Farrell, Anthony P, and Fangue, Nann A
- Subjects
Conservation ,fish ,metabolic rate ,metabolism ,physiology ,plasticity ,Environmental Sciences ,Biological Sciences - Abstract
Understanding how the current warming trends affect fish populations is crucial for effective conservation and management. To help define suitable thermal habitat for juvenile Chinook salmon, the thermal performance of juvenile Chinook salmon acclimated to either 15 or 19°C was tested across a range of environmentally relevant acute temperature changes (from 12 to 26°C). Swim tunnel respirometers were used to measure routine oxygen uptake as a measure of routine metabolic rate (RMR) and oxygen uptake when swimming maximally as a measure of maximal metabolic rate (MMR) at each test temperature. We estimated absolute aerobic scope (AAS = MMR - RMR), the capacity to supply oxygen beyond routine needs, as well as factorial aerobic scope (FAS = MMR/RMR). All fish swam at a test temperature of 23°C regardless of acclimation temperature, but some mortality occurred at 25°C during MMR measurements. Overall, RMR and MMR increased with acute warming, but aerobic capacity was unaffected by test temperatures up to 23°C in both acclimation groups. The mean AAS for fish acclimated and tested at 15°C (7.06 ± 1.76 mg O2 kg-1 h-1) was similar to that measured for fish acclimated and tested at 19°C (8.80 ± 1.42 mg O2 kg-1 h-1). Over the entire acute test temperature range, while MMR and AAS were similar for the two acclimation groups, RMR was significantly lower and FAS consequently higher at the lower test temperatures for the fish acclimated at 19°C. Thus, this stock of juvenile Chinook salmon shows an impressive aerobic capacity when acutely warmed to temperatures close to their upper thermal tolerance limit, regardless of the acclimation temperature. These results are compared with those for other salmonids, and the implications of our findings for informing management actions are discussed.
- Published
- 2017
19. Juvenile Chinook salmon use of sandbar willows in a large-scale, simulated riparian floodplain: microhabitat and energetics
- Author
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Fangue, Nann A., Cocherell, Dennis E., Mauduit, Florian, Poletto, Jamilynn B., Carr, Kara, O’Rear, Teejay A., Soyster, Gregory, Lorenzato, Stefan, Carlon, John, Kavvas, M. Levent, and Cech, Jr., Joseph J.
- Published
- 2021
- Full Text
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20. Effects of acclimation temperature and feed restriction on the metabolic performance of green sturgeon
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Zillig, Kenneth W, primary, Hannan, Kelly D, additional, Baird, Sarah E, additional, Cocherell, Dennis E, additional, Poletto, Jamilynn B, additional, and Fangue, Nann A, additional
- Published
- 2024
- Full Text
- View/download PDF
21. High thermal tolerance of a rainbow trout population near its southern range limit suggests local thermal adjustment
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Verhille, Christine E, English, Karl K, Cocherell, Dennis E, Farrell, Anthony P, and Fangue, Nann A
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Environmental Sciences ,Biological Sciences ,Ecology ,Life on Land ,aerobic scope ,fish ,metabolic rate ,Oncorhynchus mykiss ,swimming ,temperature ,Biological sciences ,Environmental sciences - Abstract
Transformation of earth's ecosystems by anthropogenic climate change is predicted for the 21st century. In many regions, the associated increase in environmental temperatures and reduced precipitation will have direct effects on the physiological performance of terrestrial and aquatic ectotherms and have already threatened fish biodiversity and important fisheries. The threat of elevated environmental temperatures is particularly salient for members of the Oncorhynchus genus living in California, which is the southern limit of their range. Here, we report the first assessments of the aerobic capacity of a Californian population of wild Oncorhynchus mykiss Walbaum in relationship to water temperature. Our field measurements revealed that wild O. mykiss from the lower Tuolumne River, California maintained 95% of their peak aerobic scope across an impressive temperature range (17.8-24.6°C). The thermal range for peak performance corresponds to local high river temperatures, but represents an unusually high temperature tolerance compared with conspecifics and congeneric species from northern latitudes. This high thermal tolerance suggests that O. mykiss at the southern limit of their indigenous distribution may be locally adjusted relative to more northern populations. From fisheries management and conservation perspectives, these findings challenge the use of a single thermal criterion to regulate the habitat of the O. mykiss species along the entirety of its distribution range.
- Published
- 2016
22. Effects of nutritional deprivation on juvenile green sturgeon growth and thermal tolerance
- Author
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Verhille, Christine E, Lee, Seunghyung, Todgham, Anne E, Cocherell, Dennis E, Hung, Silas SO, and Fangue, Nann A
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Green sturgeon ,Nutrition ,Temperature ,HSP70 ,CTmax ,Growth ,Ecology ,Zoology ,Fisheries Sciences ,Fisheries - Published
- 2016
23. Inter-population differences in salinity tolerance and osmoregulation of juvenile wild and hatchery-born Sacramento splittail.
- Author
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Verhille, Christine E, Dabruzzi, Theresa F, Cocherell, Dennis E, Mahardja, Brian, Feyrer, Frederick, Foin, Theodore C, Baerwald, Melinda R, and Fangue, Nann A
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California ,cyprinid ,osmoregulation ,salinity ,splittail ,wild ,Environmental Sciences ,Biological Sciences - Abstract
The Sacramento splittail (Pogonichthys macrolepidotus) is a minnow endemic to the highly modified San Francisco Estuary of California, USA and its associated rivers and tributaries. This species is composed of two genetically distinct populations, which, according to field observations and otolith strontium signatures, show largely allopatric distribution patterns as recently hatched juveniles. Juvenile Central Valley splittail are found primarily in the nearly fresh waters of the Sacramento and San Joaquin rivers and their tributaries, whereas San Pablo juveniles are found in the typically higher-salinity waters (i.e. up to 10‰) of the Napa and Petaluma Rivers. As the large salinity differences between young-of-year habitats may indicate population-specific differences in salinity tolerance, we hypothesized that juvenile San Pablo and Central Valley splittail populations differ in their response to salinity. In hatchery-born and wild-caught juvenile San Pablo splittail, we found upper salinity tolerances, where mortalities occurred within 336 h of exposure to 16‰ or higher, which was higher than the upper salinity tolerance of 14‰ for wild-caught juvenile Central Valley splittail. This, in conjunction with slower recovery of plasma osmolality, but not ion levels, muscle moisture or gill Na(+),K(+)-ATPase activity, in Central Valley relative to San Pablo splittail during osmoregulatory disturbance provides some support for our hypothesis of inter-population variation in salinity tolerance and osmoregulation. The modestly improved salinity tolerance of San Pablo splittail is consistent with its use of higher-salinity habitats. Although confirmation of the putative adaptive difference through further studies is recommended, this may highlight the need for population-specific management considerations.
- Published
- 2016
24. Fish-protection devices at unscreened water diversions can reduce entrainment: evidence from behavioural laboratory investigations
- Author
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Poletto, Jamilynn B, Cocherell, Dennis E, Mussen, Timothy D, Ercan, Ali, Bandeh, Hossein, Kavvas, M Levent, Cech, Joseph J, and Fangue, Nann A
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Biological Sciences ,Environmental Sciences ,Life on Land ,Behaviour ,conservation ,management ,sturgeon ,swimming physiology ,threatened species ,Biological sciences ,Environmental sciences - Abstract
Diversion (i.e. extraction) of water from rivers and estuaries can potentially affect native wildlife populations if operation is not carefully managed. For example, open, unmodified water diversions can act as a source of injury or mortality to resident or migratory fishes from entrainment and impingement, and can cause habitat degradation and fragmentation. Fish-protection devices, such as exclusion screens, louvres or sensory deterrents, can physically or behaviourally deter fish from approaching or being entrained into water diversions. However, empirical assessment of their efficacy is often lacking or is investigated only for particular economically or culturally important fishes, such as salmonids. The Southern population of anadromous green sturgeon (Acipenser medirostris) is listed as threatened in California, and there is a high density of water diversions located within their native range (the Sacramento-San Joaquin watershed). Coupled with their unique physiology and behaviour compared with many other fishes native to California, the green sturgeon is susceptible to entrainment into diversions and is an ideal species with which to study the efficacy of mitigation techniques. Therefore, we investigated juvenile green sturgeon (188-202 days post-hatch) in the presence of several fish-protection devices to assess behaviour and entrainment risk. Using a large experimental flume (∼500 kl), we found that compared with an open diversion pipe (control), the addition of a trash-rack box, louvre box, or perforated cylinder on the pipe inlet all significantly reduced the proportion of fish that were entrained through the pipe (P = 0.03, P = 0.028, and P = 0.028, respectively). Likewise, these devices decreased entrainment risk during a single movement past the pipe by between 60 and 96%. These fish-protection devices should decrease the risk of fish entrainment during water-diversion activities.
- Published
- 2015
25. Sturgeon in the Sacramento–San Joaquin Watershed: New Insights to Support Conservation and Management
- Author
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Klimley, A. Peter, Chapman, Eric D., Cech, Jr., Joseph J., Cocherell, Dennis E., Fangue, Nann A., Gingras, Marty, Jackson, Zachary, Miller, Emily A., Mora, Ethan A., Poletto, Jamilynn B., Schreier, Andrea M., Seesholtz, Alicia, Sulak, Kenneth J., Thomas, Michael J., Woodbury, David, and Wyman, Megan T.
- Subjects
green sturgeon ,Acipenser medirostris ,white sturgeon ,Acipenser transmontanus ,conservation biology - Abstract
The goal of a day-long symposium on March 3, 2015, Sturgeon in the Sacramento–San Joaquin Watershed: New Insights to Support Conservation and Management, was to present new information about the physiology, behavior, and ecology of the green (Acipenser medirostris) and white sturgeon (Acipenser transmontanus) to help guide enhanced management and conservation efforts within the Sacramento–San Joaquin watershed. This symposium identified current unknowns and highlighted new electronic tracking technologies and physiological techniques to address these knowledge gaps. A number of presentations, each reviewing ongoing research on the two species, was followed by a round-table discussion, in which each of the participants was asked to share recom-mendations for future research on sturgeon in the watershed. This article presents an in-depth review of the scientific information presented at the sympo-sium with a summary of recommendations for future research.
- Published
- 2015
26. Efficacy of a sensory deterrent and pipe modifications in decreasing entrainment of juvenile green sturgeon (Acipenser medirostris) at unscreened water diversions
- Author
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Poletto, Jamilynn B, Cocherell, Dennis E, Mussen, Timothy D, Ercan, Ali, Bandeh, Hossein, Kavvas, M Levent, Cech, Joseph J, and Fangue, Nann A
- Subjects
Biological Sciences ,Ecology ,Life on Land ,Conservation ,entrainment ,fish ,green sturgeon ,swimming performance ,water diversion ,Environmental Sciences ,Biological sciences ,Environmental sciences - Abstract
Water projects designed to extract fresh water for local urban, industrial and agricultural use throughout rivers and estuaries worldwide have contributed to the fragmentation and degradation of suitable habitat for native fishes. The number of water diversions located throughout the Sacramento-San Joaquin watershed in California's Central Valley exceeds 3300, and the majority of these are unscreened. Many anadromous fish species are susceptible to entrainment into these diversions, potentially impacting population numbers. In the laboratory, juvenile green sturgeon (Acipenser medirostris) have been shown to have high entrainment rates into unscreened diversions compared with those of other native California fish species, which may act as a significant source of mortality for this already-threatened species. Therefore, we tested the efficacy of a sensory deterrent (strobe light) and two structural pipe modifications (terminal pipe plate and upturned pipe configuration) in decreasing the entrainment of juvenile green sturgeon (mean mass ± SEM = 162.9 ± 4.0 g; mean fork length = 39.4 ± 0.3 cm) in a large (>500 kl) outdoor flume fitted with a water-diversion pipe 0.46 m in diameter. While the presence of the strobe light did not affect fish entrainment rates, the terminal pipe plate and upturned pipe modifications significantly decreased the proportion of fish entrained out of the total number tested relative to control conditions (0.13 ± 0.02 and 0.03 ± 0.02 vs. 0.44 ± 0.04, respectively). These data suggest that sensory deterrents using visual stimuli are not an effective means to reduce diversion pipe interactions for green sturgeon, but that structural alterations to diversions can successfully reduce entrainment for this species. Our results are informative for the development of effective management strategies to mitigate the impacts of water diversions on sturgeon populations and suggest that effective restoration strategies that balance agricultural needs with conservation programmes are possible.
- Published
- 2014
27. Larval green and white sturgeon swimming performance in relation to water-diversion flows
- Author
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Verhille, Christine E, Poletto, Jamilynn B, Cocherell, Dennis E, DeCourten, Bethany, Baird, Sarah, Cech, Joseph J, and Fangue, Nann A
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Biological Sciences ,Ecology ,Sturgeon ,swimming ,water diversion ,Environmental Sciences ,Biological sciences ,Environmental sciences - Abstract
Little is known of the swimming capacities of larval sturgeons, despite global population declines in many species due in part to fragmentation of their spawning and rearing habitats by man-made water-diversion structures. Larval green (Acipenser medirostris) and white sturgeon (Acipenser transmontanus) inhabit the highly altered Sacramento-San Joaquin watershed, making them logical species to examine vulnerability to entrainment by altered water flows. The risk of larval sturgeon entrainment is influenced by the ontogeny of swimming capacity and dispersal timing and their interactions with water-diversion structure operations. Therefore, the aim of this study was to describe and compare the ontogeny and allometry of larval green and white sturgeon swimming capacities until completion of metamorphosis into juveniles. Despite the faster growth rates and eventual larger size of larval white sturgeon, green sturgeon critical swimming velocities remained consistently, though modestly, greater than those of white sturgeon throughout the larval life stage. Although behavioural interactions with water-diversion structures are also important considerations, regarding swimming capacity, Sacramento-San Joaquin sturgeons are most vulnerable to entrainment in February-May, when white sturgeon early larvae are in the middle Sacramento River, and April-May, when green sturgeon early larvae are in the upper river. Green sturgeon migrating downstream to the estuary and bays in October-November are also susceptible to entrainment due to their movements combined with seasonal declines in their swimming capacity. An additional inter-species comparison of the allometric relationship between critical swimming velocities and total length with several sturgeon species found throughout the world suggests a similar ontogeny of swimming capacity with growth. Therefore, although dispersal and behaviour differ among river systems and sturgeon species, similar recommendations are applicable for managers seeking to balance water demands with restoration and conservation of sturgeons worldwide.
- Published
- 2014
28. Distribution and movement of domestic rainbow trout, Oncorhynchus mykiss, during pulsed flows in the South Fork American River, California
- Author
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Cocherell, Sarah A., Jones, Gardner J., Miranda, Javier B., Cocherell, Dennis E., Cech, Joseph J., Thompson, Lisa C., and Klimley, A. Peter
- Subjects
Life Sciences ,Nature Conservation ,Environment, general ,Animal Systematics/Taxonomy/Biogeography ,Zoology ,Freshwater & Marine Ecology ,Distribution ,Movement ,Pulsed flows ,Radio telemetry ,Rainbow trout Oncorhynchus mykiss - Abstract
We tracked the movements of ten small (SL = 25.5–31.0 cm) and ten large (SL = 32.0–38.5 cm) radio-tagged domestic rainbow trout (Oncorhynchus mykiss) in response to frequent pulsed releases of water in the South Fork American River (California) from July to October 2005. In week one all the small trout moved less than 1 km upstream or downstream of their release sites. Four small trout moved 1–3 km upstream or downstream of their release sites in the following 8 weeks. Seven out of ten large trout moved downstream after their release. In subsequent weeks most large trout showed smaller upstream and downstream movements, and were observed between 1 km upstream and 8 km downstream of their release sites. Our results suggest that domestic rainbow trout with SL > 25 cm are not forced downstream by daily pulsed flow increases from 5 to over 40 m3s−1.
- Published
- 2010
29. Water velocity preferences of Coho Salmon during the parr-smolt transformation
- Author
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Katzman, Shana M., Greathouse, Jonathan, Roessig, Julie M., Graham, Justin, Cocherell, Dennis E., and Cech, Joseph J.
- Subjects
Life Sciences ,Nature Conservation ,Environment, general ,Animal Systematics/Taxonomy/Biogeography ,Zoology ,Freshwater & Marine Ecology ,Migration ,Swimming ,Behavior ,Diel effects ,Flow table ,Coho Salmon - Abstract
Juvenile Coho Salmon undergo many physiological changes during their springtime transformation from a freshwater parr to a migratory, seawater-capable smolt. Although field observations indicate smolts moving towards the surface and across the breadth of their streams to either swim or drift downstream with the current, water-velocity preferences of these developing cohos are unknown. Using video analysis of their swimming patterns in a calibrated, laboratory flow table with a velocity gradient, groups of three cohos generally increased their preferred water velocity through the springtime study period, to a late-May peak (daytime data, change-point regression analysis, p
- Published
- 2010
30. The effect of size on juvenile green sturgeon (Acipenser medirostris) behavior near water-diversion fish screens
- Author
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Poletto, Jamilynn B., Cocherell, Dennis E., Ho, Natalie, Cech, Jr, Joseph J., Klimley, A. Peter, and Fangue, Nann A.
- Published
- 2017
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- View/download PDF
31. Characterizing the stress response in juvenile Delta smelt exposed to multiple stressors
- Author
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Pasparakis, Christina, primary, Wampler, Alexandra N., additional, Lohroff, Toni, additional, DeCastro, Francine, additional, Cocherell, Dennis E., additional, Carson, Evan W., additional, Hung, Tien-Chieh, additional, Connon, Richard E., additional, Fangue, Nann A., additional, and Todgham, Anne E., additional
- Published
- 2022
- Full Text
- View/download PDF
32. In hot water? Assessing the link between fundamental thermal physiology and predation of juvenile Chinook salmon
- Author
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McInturf, Alexandra G., primary, Zillig, Ken W., additional, Cook, Katherine, additional, Fukumoto, Jacqueline, additional, Jones, Anna, additional, Patterson, Emily, additional, Cocherell, Dennis E., additional, Michel, Cyril J., additional, Caillaud, Damien, additional, and Fangue, Nann A., additional
- Published
- 2022
- Full Text
- View/download PDF
33. Experimental evaluation of louver guidance efficiency for green sturgeon (Acipenser medirostris)
- Author
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Steel, Anna E., primary, Nguyen, Trinh, additional, Cocherell, Dennis E., additional, Carr, Kara J., additional, Bell, Heather, additional, Peterson, Amanda, additional, Kavvas, M. Levent, additional, and Fangue, Nann A., additional
- Published
- 2022
- Full Text
- View/download PDF
34. Juvenile and adult hardhead Mylopharodon conocephalus oxygen consumption rates: effects of temperature and swimming velocity
- Author
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Fangue, Nann A., Cocherell, Dennis E., La Luz, Felipe, Cech, Jr., Joseph J., and Thompson, Lisa C.
- Published
- 2015
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- View/download PDF
35. Juvenile green sturgeon (Acipenser Medirostris) and white sturgeon (Acipenser Transmontanus) behavior near water-diversion fish screens: experiments in a laboratory swimming flume
- Author
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Poletto, Jamilynn B., Cocherell, Dennis E., Ho, Natalie, Cech, Jr., Joseph J., Klimley, A. Peter, and Fangue, Nann A.
- Subjects
Animal swimming -- Psychological aspects ,Spatial behavior in animals -- Research ,Earth sciences - Abstract
Water diversions that extract fresh water for urban, industrial, and agricultural uses, as well as export to southern California, are prevalent throughout the Sacramento-San Joaquin watershed. Many water diversions are fitted with fishexclusion screens designed to prevent fish from entrainment (i.e., being drawn in). The impact of fish screens on the behavior of migrating juvenile fishes remains largely unknown, especially for threatened species such as sturgeon. We placed individual juvenile green (Acipenser medirostris) or white (Acipenser transmontanus) sturgeon in a laboratory swimming flume in the presence of standard fish screens (2 mm bar spacing) at two field-relevant water velocities (20.4 ± 0.1 and 37.3 ± 0.3 cm x [s.sup.-1]). Fish were tested at 18°C for 15 min during the day or night and in the presence of possible behavioral deterrents. Behavioral responses, including screen contacts, impingements, and time spent near screens were quantified. Green sturgeon contacted and impinged upon the screens twice as frequently as white sturgeon and also differed in how their behaviors were altered by water velocities and time of day. Our results are informative in developing effective management strategies to mitigate the impacts of water diversions on sturgeon populations and suggest that effective restoration strategies for both species should be considered separately. Les deviations de cours d'eau pour l'extraction d'eau douce pour des usages urbains, industriels ou agricoles et pour l'exportation vers le sud de la Californie sont repandues dans tout le bassin versant de Sacramento-San Joaquin. De nombreuses deviations de cours d'eau sont dotees de grilles d'exclusion des poissons conques pour prevenir l'entrainement de poissons (c.-a-d. leur entree dans la deviation). L'impact de ces grilles sur le comportement des poissons migrateurs juveniles demeure largement meconnu, particulierement en ce qui concerne des especes menacees comme l'esturgeon. Nous avons place des esturgeons verts (Acipenser medirostris) ou blancs (Acipenser transmontanus) juveniles dans un canal de nage en laboratoire, en presence de grilles a poissons normales (espacement des barreaux de 2 mm) et a deux vitesses du courant pertinentes en ce qui concerne les conditions de terrain (20,4 [+ ou -] 0,1 et 37,3 [+ ou -] 0,3 cm x [s.sup.-1]). Les essais avec les poissons ont ete menes a 18[degre]C pendant 15 min durant le jour ou la nuit et en presence d'elements pouvant avoir un effet dissuasif. Les reactions comportementales, y compris les contacts avec les grilles, les collisions et le temps passe pres des grilles, ont ete quantifiees. Les contacts et les collisions des esturgeons verts avec les grilles etaient deux fois plus frequents que ceux des esturgeons blancs, et les modifications des comportements selon la vitesse de l'eau et le moment de la journee etaient egalement differentes pour les deux especes. Nos resultats fournissent de l'information utile pour l'elaboration de strategies de gestion efficaces visant a attenuer les impacts des deviations de cours d'eau sur les populations d'esturgeons et donnent a penser que des strategies de retablissement efficaces devraient etre examinees separement pour les deux especes. [Traduit par la Redaction], Introduction Barriers to fish passage and risks to fish migration are a concern for fish populations in altered aquatic ecosystems throughout the world (e.g., Larinier 1998; Mallen-Cooper and Brand 2007; [...]
- Published
- 2014
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36. Temperature preferences of hardhead Mylopharodon conocephalus and rainbow trout Oncorhynchus mykiss in an annular chamber
- Author
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Cocherell, Dennis E., Fangue, Nann A., Klimley, Peter A., and Cech, Jr., Joseph J.
- Published
- 2014
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- View/download PDF
37. Effects of acoustic tagging on juvenile green sturgeon incision healing, swimming performance, and growth
- Author
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Miller, Emily A., Froehlich, Halley E., Cocherell, Dennis E., Thomas, Michael J., Cech, Jr., Joseph J., Klimley, A. Peter, and Fangue, Nann A.
- Published
- 2014
- Full Text
- View/download PDF
38. Survival of a threatened salmon is linked to spatial variability in river conditions
- Author
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Hause, Colby L., primary, Singer, Gabriel P., additional, Buchanan, Rebecca A., additional, Cocherell, Dennis E., additional, Fangue, Nann A., additional, and Rypel, Andrew L., additional
- Published
- 2021
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- View/download PDF
39. A lateral-displacement flume for fish behavior and stranding studies during simulated pulsed flows
- Author
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Cocherell, Sarah A., Chun, Stephanie N., Cocherell, Dennis E., Thompson, Lisa C., Klimley, A. Peter, and Cech, Jr., Joseph J.
- Published
- 2012
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40. Rainbow trout Oncorhynchus mykiss energetic responsesto pulsed flows in the American River, California, assessed by electromyogram telemetry
- Author
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Cocherell, Sarah A., Cocherell, Dennis E., Jones, Gardner J., Miranda, Javier B., Thompson, Lisa C., Cech, Jr., Joseph J., and Klimley, A. Peter
- Published
- 2011
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41. Displacement, velocity preference, and substrate use of three native California stream fishes in simulated pulsed flows
- Author
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Chun, Stephanie N., Cocherell, Sarah A., Cocherell, Dennis E., Miranda, Javier B., Jones, Gardner J., Graham, Justin, Klimley, A. Peter, Thompson, Lisa C., and Cech, Jr, Joseph J.
- Published
- 2011
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42. Experimental assessment of predation risk for juvenile green sturgeon, Acipenser medirostris, by two predatory fishes
- Author
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Baird, Sarah E., primary, Steel, Anna E., additional, Cocherell, Dennis E., additional, Poletto, Jamilynn B., additional, Follenfant, Rhiannon, additional, and Fangue, Nann A., additional
- Published
- 2019
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43. Applying a simplified energy-budget model to explore the effects of temperature and food availability on the life history of green sturgeon (Acipenser medirostris)
- Author
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Hamda, Natnael T., primary, Martin, Benjamin, additional, Poletto, Jamilynn B., additional, Cocherell, Dennis E., additional, Fangue, Nann A., additional, Van Eenennaam, Joel, additional, Mora, Ethan A., additional, and Danner, Eric, additional
- Published
- 2019
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- View/download PDF
44. Assessment of multiple stressors on the growth of larval green sturgeon Acipenser medirostris: implications for recruitment of early life-history stages
- Author
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Poletto, Jamilynn B., Martin, Benjamin, Danner, Eric, Baird, Sarah E., Cocherell, Dennis E., Hamda, Natnael, Cech Jr., Joseph J., Fangue, Nann A., Poletto, Jamilynn B., Martin, Benjamin, Danner, Eric, Baird, Sarah E., Cocherell, Dennis E., Hamda, Natnael, Cech Jr., Joseph J., and Fangue, Nann A.
- Published
- 2018
45. Experimental assessment of predation risk for juvenile green sturgeon, Acipenser medirostris, by two predatory fishes.
- Author
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Baird, Sarah E., Steel, Anna E., Cocherell, Dennis E., Poletto, Jamilynn B., Follenfant, Rhiannon, and Fangue, Nann A.
- Subjects
STRIPED bass ,ACIPENSER ,LARGEMOUTH bass ,STURGEONS ,RISK assessment ,PREDATORY animals - Abstract
Predation is a common cause of early life stage mortality in fishes, with reduced risk as individuals grow and become too large to be consumed by gape‐limited predatory fishes. Large‐bodied species, such as sturgeon, may reach this size‐refuge within the first year. However, there is limited understanding of what this size threshold is despite the value of this information for conservation management. We conducted laboratory‐based predation experiments on juvenile green sturgeon, Acipenser medirostris, to estimate vulnerability to predation during outmigration from their natal reaches in California to the Pacific Ocean. Two highly abundant and non‐native predatory fish species (largemouth bass, Micropterus salmoides, and striped bass, Morone saxatilis) were captured in the wild to be tested with developing juvenile green sturgeon from the UC Davis Green Sturgeon Broodstock Program. Experimental tanks, each containing five predators, received thirty prey for 24‐hr exposures. Between sturgeon prey trials, predators were exposed to alternative prey species to confirm predators were exhibiting normal feeding behaviors. In addition to green sturgeon mortality data, trials were video recorded and predatory behaviors were quantified. Overall, these predator species displayed much lower rates of predation on juvenile green sturgeon than alternate prey. Predation decreased with green sturgeon size, and predation risk diminished to zero once sturgeon reached a length threshold of roughly 20–22 cm total length, or between 38% and 58% of predator total length. Behavioral analyses showed low motivation to feed on green sturgeon, with both predators attempting predation less frequently as sturgeon grew. Results of this study imply that optimizing growth rates for larval and juvenile sturgeon would shorten the time in which they are vulnerable to predation. Future experiments should assess predation risk of juvenile green sturgeon by additional predator species common to the Sacramento‐San Joaquin watershed. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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- View/download PDF
46. Native Chinook salmonOncorhynchus tshawytschaand non‐native brook troutSalvelinus fontinalisprefer similar water temperatures
- Author
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Baird, Sarah E., primary, Steel, Anna E., additional, Cocherell, Dennis E., additional, Cech, Joseph J., additional, and Fangue, Nann A., additional
- Published
- 2018
- Full Text
- View/download PDF
47. Assessment of multiple stressors on the growth of larval green sturgeon Acipenser medirostris: implications for recruitment of early life‐history stages
- Author
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Poletto, Jamilynn B., primary, Martin, Benjamin, additional, Danner, Eric, additional, Baird, Sarah E., additional, Cocherell, Dennis E., additional, Hamda, Natnael, additional, Cech, Jr, Joseph J, additional, and Fangue, Nann A., additional
- Published
- 2018
- Full Text
- View/download PDF
48. Plastic responses to diel thermal variation in juvenile green sturgeon, Acipenser medirostris
- Author
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Rodgers, Essie M., primary, Cocherell, Dennis E., additional, Nguyen, Trinh X., additional, Todgham, Anne E., additional, and Fangue, Nann A., additional
- Published
- 2018
- Full Text
- View/download PDF
49. Hydraulics Near Unscreened Diversion Pipes in Open Channels: Large Flume Experiments
- Author
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Ercan, Ali, Kavvas, M. Levent, Carr, Kara, Hockett, Zachary, Bandeh, Houssein, Mussen, Timothy D., Cocherell, Dennis E., Poletto, Jamilynn B., Cech, Joseph J., Jr., Fangue, Nann A., Ercan, Ali, Kavvas, M. Levent, Carr, Kara, Hockett, Zachary, Bandeh, Houssein, Mussen, Timothy D., Cocherell, Dennis E., Poletto, Jamilynn B., Cech, Joseph J., Jr., and Fangue, Nann A.
- Abstract
Most of the water diversions on the Sacramento and San Joaquin Rivers (California, United States) and their tributaries are currently unscreened. These unscreened diversions are commonly used for irrigation and are potentially harmful to migrating and resident fishes. A large flume (test section: 18.29 m long, 3.05 m wide and 3.20 m high) was used to investigate the hydraulic fields near an unscreened water diversion under ecologically and hydraulically relevant diversion rates and channel flow characteristics. We investigated all combinations of three diversion rates (0.28, 0.42, and 0.57 m3/s) and three sweeping velocities (0.15, 0.38, and 0.61 m/s), with one additional test at 0.71 m3/s and 0.15 m/s. We measured the three-dimensional velocity field at seven cross sections near a diversion pipe and constructed regression equations of the observed maximum velocities near the pipe. Because the velocity components in three directions (longitudinal, transverse, and vertical) were significantly greater near the diversion pipe inlet compared with those farther from it, they cannot be neglected in the modeling and design of fish guidance and protection devices for diversion pipes. Our results should be of great value in quantifying the hydraulic fields that are formed around fish guidance devices to design more effective protection for fishes from entrainment into unscreened water-diversion pipes.
- Published
- 2017
50. Unusual aerobic performance at high temperatures in juvenile Chinook salmon, Oncorhynchus tshawytscha
- Author
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Poletto, Jamilynn B., Cocherell, Dennis E., Baird, Sarah E., Nguyen, Trinh X., Cabrera-Stagno, Valentina, Farrell, Anthony P., Fangue, Nann A., Poletto, Jamilynn B., Cocherell, Dennis E., Baird, Sarah E., Nguyen, Trinh X., Cabrera-Stagno, Valentina, Farrell, Anthony P., and Fangue, Nann A.
- Abstract
Understanding how the current warming trends affect fish populations is crucial for effective conservation and management. To help define suitable thermal habitat for juvenile Chinook salmon, the thermal performance of juvenile Chinook salmon acclimated to either 15 or 19°C was tested across a range of environmentally relevant acute temperature changes (from 12 to 26°C). Swim tunnel respirometers were used to measure routine oxygen uptake as a measure of routine metabolic rate (RMR) and oxygen uptake when swimming maximally as a measure of maximal metabolic rate (MMR) at each test temperature. We estimated absolute aerobic scope (AAS = MMR − RMR), the capacity to supply oxygen beyond routine needs, as well as factorial aerobic scope (FAS = MMR/RMR). All fish swam at a test temperature of 23°C regardless of acclimation temperature, but some mortality occurred at 25°C during MMR measurements. Overall, RMR and MMR increased with acute warming, but aerobic capacity was unaffected by test temperatures up to 23°C in both acclimation groups. The mean AAS for fish acclimated and tested at 15°C (7.06 ± 1.76 mg O2 kg−1 h−1) was similar to that measured for fish acclimated and tested at 19°C (8.80 ± 1.42 mg O2 kg−1 h−1). Over the entire acute test temperature range, while MMR and AAS were similar for the two acclimation groups, RMR was significantly lower and FAS consequently higher at the lower test temperatures for the fish acclimated at 19°C. Thus, this stock of juvenile Chinook salmon shows an impressive aerobic capacity when acutely warmed to temperatures close to their upper thermal tolerance limit, regardless of the acclimation temperature. These results are compared with those for other salmonids, and the implications of our findings for informing management actions are discussed.
- Published
- 2017
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