41 results on '"Clavero, E."'
Search Results
2. Microalgae fractionation using steam explosion, dynamic and tangential cross-flow membrane filtration
- Author
-
Lorente, E., Hapońska, M., Clavero, E., Torras, C., and Salvadó, J.
- Published
- 2017
- Full Text
- View/download PDF
3. Host immune genetic variations influence the risk of developing acute myeloid leukaemia: results from the NuCLEAR consortium
- Author
-
Sánchez-Maldonado, J. M., Campa, D., Springer, J., Badiola, J., Niazi, Y., Moñiz-Díez, A., Hernández-Mohedo, F., González-Sierra, P., Ter Horst, R., Macauda, A., Brezina, S., Cunha, C., Lackner, M., López-Nevot, M. A., Fianchi, L., Pagano, L., López-Fernández, E., Potenza, L., Luppi, M., Moratalla, L., Rodríguez-Sevilla, J. J., Fonseca, J. E., Tormo, M., Solano, C., Clavero, E., Romero, A., Li, Y., Lass-Flörl, C., Einsele, H., Vazquez, L., Loeffler, J., Hemminki, K., Carvalho, A., Netea, M. G., Gsur, A., Dumontet, C., Canzian, F., Försti, A., Jurado, M., and Sainz, J.
- Published
- 2020
- Full Text
- View/download PDF
4. Polymorphisms within Autophagy-Related Genes as Susceptibility Biomarkers for Multiple Myeloma: A Meta-Analysis of Three Large Cohorts and Functional Characterization.
- Author
-
Clavero, E., Sanchez-Maldonado, J.M., Macauda, A., Horst, R. ter, Sampaio-Marques, B., Jurczyszyn, A., Clay-Gilmour, A., Stein, A., Hildebrandt, M.A., Weinhold, N., Buda, G., García-Sanz, R., Tomczak, W., Vogel, U., Jerez, A., Zawirska, D., Wątek, M., Hofmann, J.N., Landi, S., Spinelli, J.J., Butrym, A., Kumar, A., Martínez-López, J., Galimberti, S., Sarasquete, M.E., Subocz, E., Iskierka-Jażdżewska, E., Giles, G.G., Rybicka-Ramos, M., Kruszewski, M., Abildgaard, N., Verdejo, F.G., Sánchez Rovira, P., Silva Filho, M.I. da, Kadar, K., Razny, M., Cozen, W., Pelosini, M., Jurado, M., Bhatti, P., Dudzinski, M., Druzd-Sitek, A., Orciuolo, E., Li, Y., Norman, A.D., Zaucha, J.M., Reis, R.M., Markiewicz, M., Rodríguez Sevilla, J.J., Andersen, V., Jamroziak, K., Hemminki, K., Berndt, S.I., Rajkumar, V., Mazur, G., Kumar, S.K., Ludovico, P., Nagler, A., Chanock, S.J., Dumontet, C., Machiela, M.J., Varkonyi, J., Camp, N.J., Ziv, E., Vangsted, A.J., Brown, E.E., Campa, D., Vachon, C.M., Netea, M.G., Canzian, F., Försti, A., Sainz, J., Clavero, E., Sanchez-Maldonado, J.M., Macauda, A., Horst, R. ter, Sampaio-Marques, B., Jurczyszyn, A., Clay-Gilmour, A., Stein, A., Hildebrandt, M.A., Weinhold, N., Buda, G., García-Sanz, R., Tomczak, W., Vogel, U., Jerez, A., Zawirska, D., Wątek, M., Hofmann, J.N., Landi, S., Spinelli, J.J., Butrym, A., Kumar, A., Martínez-López, J., Galimberti, S., Sarasquete, M.E., Subocz, E., Iskierka-Jażdżewska, E., Giles, G.G., Rybicka-Ramos, M., Kruszewski, M., Abildgaard, N., Verdejo, F.G., Sánchez Rovira, P., Silva Filho, M.I. da, Kadar, K., Razny, M., Cozen, W., Pelosini, M., Jurado, M., Bhatti, P., Dudzinski, M., Druzd-Sitek, A., Orciuolo, E., Li, Y., Norman, A.D., Zaucha, J.M., Reis, R.M., Markiewicz, M., Rodríguez Sevilla, J.J., Andersen, V., Jamroziak, K., Hemminki, K., Berndt, S.I., Rajkumar, V., Mazur, G., Kumar, S.K., Ludovico, P., Nagler, A., Chanock, S.J., Dumontet, C., Machiela, M.J., Varkonyi, J., Camp, N.J., Ziv, E., Vangsted, A.J., Brown, E.E., Campa, D., Vachon, C.M., Netea, M.G., Canzian, F., Försti, A., and Sainz, J.
- Abstract
Item does not contain fulltext, Multiple myeloma (MM) arises following malignant proliferation of plasma cells in the bone marrow, that secrete high amounts of specific monoclonal immunoglobulins or light chains, resulting in the massive production of unfolded or misfolded proteins. Autophagy can have a dual role in tumorigenesis, by eliminating these abnormal proteins to avoid cancer development, but also ensuring MM cell survival and promoting resistance to treatments. To date no studies have determined the impact of genetic variation in autophagy-related genes on MM risk. We performed meta-analysis of germline genetic data on 234 autophagy-related genes from three independent study populations including 13,387 subjects of European ancestry (6863 MM patients and 6524 controls) and examined correlations of statistically significant single nucleotide polymorphisms (SNPs; p < 1 × 10(-9)) with immune responses in whole blood, peripheral blood mononuclear cells (PBMCs), and monocyte-derived macrophages (MDM) from a large population of healthy donors from the Human Functional Genomic Project (HFGP). We identified SNPs in six loci, CD46, IKBKE, PARK2, ULK4, ATG5, and CDKN2A associated with MM risk (p = 4.47 × 10(-4)-5.79 × 10(-14)). Mechanistically, we found that the ULK4(rs6599175) SNP correlated with circulating concentrations of vitamin D3 (p = 4.0 × 10(-4)), whereas the IKBKE(rs17433804) SNP correlated with the number of transitional CD24(+)CD38(+) B cells (p = 4.8 × 10(-4)) and circulating serum concentrations of Monocyte Chemoattractant Protein (MCP)-2 (p = 3.6 × 10(-4)). We also found that the CD46(rs1142469) SNP correlated with numbers of CD19(+) B cells, CD19(+)CD3(-) B cells, CD5(+)IgD(-) cells, IgM(-) cells, IgD(-)IgM(-) cells, and CD4(-)CD8(-) PBMCs (p = 4.9 × 10(-4)-8.6 × 10(-4)) and circulating concentrations of interleukin (IL)-20 (p = 0.00082). Finally, we observed that the CDKN2A(rs2811710) SNP correlated with levels of CD4(+)EMCD45RO(+)CD27(-) cells (p = 9.3 × 10(-4)). These results s
- Published
- 2023
5. Identification of novel genetic loci for risk of multiple myeloma by functional annotation.
- Author
-
Macauda, A., Briem, K., Clay-Gilmour, A., Cozen, W., Försti, A., Giaccherini, M., Corradi, C., Sainz, J., Niazi, Y., Horst, R. ter, Li, Y., Netea, M.G., Vogel, U., Hemminki, K., Slager, S.L., Varkonyi, J., Andersen, V., Iskierka-Jazdzewska, E., Mártinez-Lopez, J., Zaucha, J., Camp, N.J., Rajkumar, S.V., Druzd-Sitek, A., Bhatti, P., Chanock, S.J., Kumar, S.K., Subocz, E., Mazur, G., Landi, S., Machiela, M.J., Jerez, A., Norman, A.D., Hildebrandt, M.A., Kadar, K., Berndt, S.I., Ziv, E., Buda, G., Nagler, A., Dumontet, C., Raźny, M., Watek, M., Butrym, A., Grzasko, N., Dudzinski, M., Rybicka-Ramos, M., Matera, E.L., García-Sanz, R., Goldschmidt, H., Jamroziak, K., Jurczyszyn, A., Clavero, E., Giles, G.G., Pelosini, M., Zawirska, D., Kruszewski, M., Marques, H., Haastrup, E., Sánchez-Maldonado, J.M., Bertsch, U., Rymko, M., Raab, M.S., Brown, E.E., Hofmann, J.N., Vachon, C., Campa, D., Canzian, F., Macauda, A., Briem, K., Clay-Gilmour, A., Cozen, W., Försti, A., Giaccherini, M., Corradi, C., Sainz, J., Niazi, Y., Horst, R. ter, Li, Y., Netea, M.G., Vogel, U., Hemminki, K., Slager, S.L., Varkonyi, J., Andersen, V., Iskierka-Jazdzewska, E., Mártinez-Lopez, J., Zaucha, J., Camp, N.J., Rajkumar, S.V., Druzd-Sitek, A., Bhatti, P., Chanock, S.J., Kumar, S.K., Subocz, E., Mazur, G., Landi, S., Machiela, M.J., Jerez, A., Norman, A.D., Hildebrandt, M.A., Kadar, K., Berndt, S.I., Ziv, E., Buda, G., Nagler, A., Dumontet, C., Raźny, M., Watek, M., Butrym, A., Grzasko, N., Dudzinski, M., Rybicka-Ramos, M., Matera, E.L., García-Sanz, R., Goldschmidt, H., Jamroziak, K., Jurczyszyn, A., Clavero, E., Giles, G.G., Pelosini, M., Zawirska, D., Kruszewski, M., Marques, H., Haastrup, E., Sánchez-Maldonado, J.M., Bertsch, U., Rymko, M., Raab, M.S., Brown, E.E., Hofmann, J.N., Vachon, C., Campa, D., and Canzian, F.
- Abstract
Contains fulltext : 299996.pdf (Publisher’s version ) (Open Access), 01 november 2023
- Published
- 2023
6. Effect of pre-treatments on the production of biofuels from Phaeodactylum tricornutum
- Author
-
Caporgno, M.P., Olkiewicz, M., Torras, C., Salvadó, J., Clavero, E., and Bengoa, C.
- Published
- 2016
- Full Text
- View/download PDF
7. Biorefinery concept in a microalgae pilot plant. Culturing, dynamic filtration and steam explosion fractionation
- Author
-
Nurra, C., Torras, C., Clavero, E., Ríos, S., Rey, M., Lorente, E., Farriol, X., and Salvadó, J.
- Published
- 2014
- Full Text
- View/download PDF
8. Aerophytic biofilms in dim habitats
- Author
-
Roldan, M., primary, Clavero, E., additional, and Hernandez-Marine, M., additional
- Published
- 2017
- Full Text
- View/download PDF
9. Polymorphisms within the TNFSF4 and mapkapk2 loci influence the risk of developing invasive aspergillosis: A two-stage case control study in the context of the aspbiomics consortium
- Author
-
Sanchez-Maldonado, J. M., Moniz-Diez, A., Ter Horst, R., Campa, D., Cabrera-Serrano, A. J., Martinez-Bueno, M., Garrido-Collado, M. P., Hernandez-Mohedo, F., Fernandez-Puerta, L., Lopez-Nevot, M. A., Cunha, C., Gonzalez-Sierra, P. A., Springer, J., Lackner, M., Alcazar-Fuoli, L., Fianchi, L., Aguado, J. M., Pagano, L., Lopez-Fernandez, E., Clavero, E., Potenza, L., Luppi, M., Moratalla, L., Solano, C., Sampedro, A., Cuenca-Estrella, M., Lass-Florl, C., Canzian, F., Loeffler, J., Li, Y., Einsele, H., Netea, M. G., Vazquez, L., Carvalho, A., Jurado, M., Sainz, J., Fianchi L., Pagano L. (ORCID:0000-0001-8287-928X), Sanchez-Maldonado, J. M., Moniz-Diez, A., Ter Horst, R., Campa, D., Cabrera-Serrano, A. J., Martinez-Bueno, M., Garrido-Collado, M. P., Hernandez-Mohedo, F., Fernandez-Puerta, L., Lopez-Nevot, M. A., Cunha, C., Gonzalez-Sierra, P. A., Springer, J., Lackner, M., Alcazar-Fuoli, L., Fianchi, L., Aguado, J. M., Pagano, L., Lopez-Fernandez, E., Clavero, E., Potenza, L., Luppi, M., Moratalla, L., Solano, C., Sampedro, A., Cuenca-Estrella, M., Lass-Florl, C., Canzian, F., Loeffler, J., Li, Y., Einsele, H., Netea, M. G., Vazquez, L., Carvalho, A., Jurado, M., Sainz, J., Fianchi L., and Pagano L. (ORCID:0000-0001-8287-928X)
- Abstract
Here, we assessed whether 36 single nucleotide polymorphisms (SNPs) within the TNFSF4 and MAPKAPK2 loci influence the risk of developing invasive aspergillosis (IA). We conducted a two-stage case control study including 911 high-risk patients diagnosed with hematological malignancies that were ascertained through the aspBIOmics consortium. The meta-analysis of the discovery and replication populations revealed that carriers of the TNFSF4rs7526628T/T genotype had a significantly increased risk of developing IA (p = 0.00022). We also found that carriers of the TNFSF4rs7526628T allele showed decreased serum levels of TNFSF14 protein (p = 0.0027), and that their macrophages had a decreased fungicidal activity (p = 0.048). In addition, we observed that each copy of the MAPKAPK2rs12137965G allele increased the risk of IA by 60% (p = 0.0017), whereas each copy of the MAPKAPK2rs17013271T allele was estimated to decrease the risk of developing the disease (p = 0.0029). Mechanistically, we found that carriers of the risk MAPKAPK2rs12137965G allele showed increased numbers of CD38+IgM-IgD-plasmablasts in blood (p = 0.00086), whereas those harboring two copies of the allele had decreased serum concentrations of thymic stromal lymphopoietin (p = 0.00097). Finally, we also found that carriers of the protective MAPKAPK2rs17013271T allele had decreased numbers of CD27-IgM-IgD-B cells (p = 0.00087) and significantly lower numbers of CD14+ and CD14+CD16-cells (p = 0.00018 and 0.00023). Altogether, these results suggest a role of the TNFSF4 and MAPKAPK2 genes in determining IA risk.
- Published
- 2021
10. Host immune genetic variations influence the risk of developing acute myeloid leukaemia: results from the NuCLEAR consortium
- Author
-
Sánchez-Maldonado, J M, Campa, D, Springer, J, Badiola, J, Niazi, Y, Moñiz-Díez, A, Hernández-Mohedo, F, González-Sierra, P, Ter Horst, R, Macauda, A, Brezina, S, Cunha, C, Lackner, M, López-Nevot, M A, Fianchi, Luana, Pagano, Livio, López-Fernández, E, Potenza, L, Luppi, M, Moratalla, L, Rodríguez-Sevilla, J J, Fonseca, J E, Tormo, M, Solano, C, Clavero, E, Romero, A, Li, Y, Lass-Flörl, C, Einsele, H, Vazquez, L, Loeffler, J, Hemminki, K, Carvalho, A, Netea, M G, Gsur, A, Dumontet, C, Canzian, F, Försti, A, Jurado, M, Sainz, J, Fianchi, L, Pagano, L (ORCID:0000-0001-8287-928X), Sánchez-Maldonado, J M, Campa, D, Springer, J, Badiola, J, Niazi, Y, Moñiz-Díez, A, Hernández-Mohedo, F, González-Sierra, P, Ter Horst, R, Macauda, A, Brezina, S, Cunha, C, Lackner, M, López-Nevot, M A, Fianchi, Luana, Pagano, Livio, López-Fernández, E, Potenza, L, Luppi, M, Moratalla, L, Rodríguez-Sevilla, J J, Fonseca, J E, Tormo, M, Solano, C, Clavero, E, Romero, A, Li, Y, Lass-Flörl, C, Einsele, H, Vazquez, L, Loeffler, J, Hemminki, K, Carvalho, A, Netea, M G, Gsur, A, Dumontet, C, Canzian, F, Försti, A, Jurado, M, Sainz, J, Fianchi, L, and Pagano, L (ORCID:0000-0001-8287-928X)
- Abstract
The purpose of this study was to conduct a two-stage case control association study including 654 acute myeloid leukaemia (AML) patients and 3477 controls ascertained through the NuCLEAR consortium to evaluate the effect of 27 immune-related single nucleotide polymorphisms (SNPs) on AML risk. In a pooled analysis of cohort studies, we found that carriers of the IL13rs1295686A/A genotype had an increased risk of AML (PCorr = 0.0144) whereas carriers of the VEGFArs25648T allele had a decreased risk of developing the disease (PCorr = 0.00086). In addition, we found an association of the IL8rs2227307 SNP with a decreased risk of developing AML that remained marginally significant after multiple testing (PCorr = 0.072). Functional experiments suggested that the effect of the IL13rs1295686 SNP on AML risk might be explained by its role in regulating IL1Ra secretion that modulates AML blast proliferation. Likewise, the protective effect of the IL8rs2227307 SNP might be mediated by TLR2-mediated immune responses that affect AML blast viability, proliferation and chemorresistance. Despite the potential interest of these results, additional functional studies are still warranted to unravel the mechanisms by which these variants modulate the risk of AML. These findings suggested that IL13, VEGFA and IL8 SNPs play a role in modulating AML risk.
- Published
- 2020
11. Application of ABS membranes in dynamic filtration for Chlorella sorokiniana dewatering
- Author
-
Universitat Rovira i Virgili, Hapońska M; Clavero E; Salvadó J; Torras C, Universitat Rovira i Virgili, and Hapońska M; Clavero E; Salvadó J; Torras C
- Abstract
© 2017 Elsevier Ltd This work focuses on the use of dynamic membrane filtration with cheap membranes manufactured from acrylonitrile butadiene styrene polymer for dewatering of Chlorella sorokiniana microalgae strain. Dynamic filtration based on vibration was used at pilot scale and compared to conventional cross-flow filtration to demonstrate how fouling can be greatly minimized. Experiments were carried-out with different types of commercial membranes from different pore sizes and materials such as polyethersulfone or polyacrylonitrile. ABS membranes were produced, characterized (scanning electron microscopy, contact angle and porosity measurements) and tested with conventional and dynamic filtration. Composition of acrylonitrile butadiene styrene polymeric solution as well as conditions of membrane preparation were examined in order to obtain a useable membrane for microalgae filtration. Acrylonitrile butadiene styrene membranes offered promising results in terms of permeability when applied to both filtration techniques for Chlorella sorokiniana dewatering. The influence of different concentrations of microalgae culture as a feed for dynamic membrane filtration was examined. To confirm total microalgae rejection the optical density of feed, permeate and retentate was studied in all experiments. Acrylonitrile butadiene styrene material is order of magnitudes cheaper than conventional membrane materials. Combined with dynamic filtration, both may turn membrane filtration into a preferred technology for microalgae dewatering.
- Published
- 2018
12. Pilot scale dewatering of Chlorella sorokiniana and Dunaliella tertiolecta by sedimentation followed by dynamic filtration
- Author
-
Universitat Rovira i Virgili, Haponska, M.; Clavero, E.; Salvado, J.; Farriol, X.; Torras, C., Universitat Rovira i Virgili, and Haponska, M.; Clavero, E.; Salvado, J.; Farriol, X.; Torras, C.
- Abstract
The present work focuses on the application of pH-induced sedimentation combined with dynamic filtration for microalgae culture concentration at pilot scale. Concentrations were performed on cultures of two microalgae species: Dunaliella tertiolecta and Chlorella sorokiniana. The objective of the combined process was to reduce microalgae dewatering costs. It is true that sedimentation reduces operation costs considerably, but the results of membrane filtration offer a total rejection and high final concentrations, at even a cheaper cost than centrifugation. When using the two technologies in series, high concentration factors with values up to 207.4 for Dunaliella tertiolecta and 245.3 for Chlorella sorokiniana were achieved. The final concentration of Dunaliella tertiolecta was 184.58 g L−1 with 81.5% of water content in the sludge. The concentrations obtained were high enough to dispense with further operations for the sludge to be ready for a cell disruption step using steam explosion. Analytic techniques used were dry weight and optical density. For the filtration, experiments were performed using both commercially available and self-prepared membranes, manufactured from Acrylonitrile Butadiene Styrene: a novel polymer in membrane technology, selected to reduce costs. Each of them could perform in a similar way to commercial membranes in a pilot scale high-shear stress membrane module.
- Published
- 2018
13. Pilot scale dewatering of Chlorella sorokiniana and Dunaliella tertiolecta by sedimentation followed by dynamic filtration
- Author
-
Hapońska, M., primary, Clavero, E., additional, Salvadó, J., additional, Farriol, X., additional, and Torras, C., additional
- Published
- 2018
- Full Text
- View/download PDF
14. Differential Diagnosis Between Myelodysplastic Syndromes and Non-Clonal Cytopenias by Flow Cytometry Analysis Using a Myeloid Maturation Database
- Author
-
Cedena, M.T., primary, Miras, F., additional, Ayala, R., additional, Martín-Clavero, E., additional, Paciello, M.L., additional, and Martínez-López, J., additional
- Published
- 2017
- Full Text
- View/download PDF
15. Dynamic Filtration and Cheap Membranes to Decrease Microalgae Dewatering Cost
- Author
-
Nurra, C., Clavero, E., Salvadó, J., and Torras, C.
- Subjects
Biomass - Abstract
In this work, results of using dynamic and conventional filtration systems and different membrane materials are presented. Huge permeability improvement was obtained. In some cases, fouling was almost eliminated. For a given plant yield, membrane area required is much smaller in dynamic filtration than in conventional one. It lets decrease investment cost, which was found to be more sensitive than operational one. Moreover, this cost could decrease even more if materials with lower price than conventional one are used. The combination of sedimentation and membrane dewatering was also investigated which allowed a reduction of harvesting time without affecting membrane performances., Proceedings of the 22nd European Biomass Conference and Exhibition, 23-26 June 2014, Hamburg, Germany, pp. 142-144
- Published
- 2014
- Full Text
- View/download PDF
16. Steam Explosion in Microalgae Biorefining
- Author
-
Lorente, E., Clavero, E., Torras, C., and Salvadó, J.
- Subjects
Biomass - Abstract
Various pre-treatment methods (autoclaving, ultrasound, microwave and steam explosion) have been compared to determine the most efficient method for the extraction of lipids from three different samples of microalgae (Nannochloropsis gaditana, Chlorella sorokiniana and Phaeodactylum tricornutum). Among the studied methods, steam explosion gave the highest lipid extraction yields for the three microalgae species. Therefore, the method was further studied and the application of acid catalysed steam explosion pre-treatment was investigated for simultaneous lipid extraction and sugar release from microalgae. The effect of different variables, including temperature and acid concentration, was analysed. The experimental results demonstrate the efficacy and feasibility of the acid catalysed steam explosion pre-treatment, followed by n-hexane lipid extraction. Besides, this study verified high efficiencies in the extraction of lipid of exploded microalgae using n-hexane against the low efficiencies obtained for the untreated microalgae., Proceedings of the 22nd European Biomass Conference and Exhibition, 23-26 June 2014, Hamburg, Germany, pp. 855-857
- Published
- 2014
- Full Text
- View/download PDF
17. Energy and Nutrients Recovery from Lipid-Extracted Nannochloropsis via Anaerobic Digestion and Hydrothermal Liquefaction
- Author
-
Caporgno, M. P., primary, Clavero, E., additional, Torras, C., additional, Salvadó, J., additional, Lepine, O., additional, Pruvost, J., additional, Legrand, J., additional, Giralt, J., additional, and Bengoa, C., additional
- Published
- 2016
- Full Text
- View/download PDF
18. 152 - Differential Diagnosis Between Myelodysplastic Syndromes and Non-Clonal Cytopenias by Flow Cytometry Analysis Using a Myeloid Maturation Database
- Author
-
Cedena, M.T., Miras, F., Ayala, R., Martín-Clavero, E., Paciello, M.L., and Martínez-López, J.
- Published
- 2017
- Full Text
- View/download PDF
19. DIATOMS FROM LA TRINITAT S ALT WORKS, EBRE DELTA (SPAIN). CONSIDERATIONS ABOUT AMPHORA HYALINA
- Author
-
Merino, Q, Clavero, E, Grimalt, J, Hernandez-Mariné, M, Observatoire océanologique de Banyuls (OOB), and Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDV]Life Sciences [q-bio] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 1995
20. sp. nov. (Bacillariophyceae); a new species from hypersaline environments
- Author
-
CLAVERO, E, primary, GRIMALT, J, additional, and HERNANDEZMARINE, M, additional
- Published
- 1999
- Full Text
- View/download PDF
21. Entomoneis vertebralis sp. nov. (Bacillariophyceae); a new species from hypersaline environments
- Author
-
Clavero, E., Joan Grimalt, and Hernández-Mariné, M.
22. Polymorphisms within Autophagy-Related Genes as Susceptibility Biomarkers for Multiple Myeloma: A Meta-Analysis of Three Large Cohorts and Functional Characterization
- Author
-
Esther Clavero, José Manuel Sanchez-Maldonado, Angelica Macauda, Rob Ter Horst, Belém Sampaio-Marques, Artur Jurczyszyn, Alyssa Clay-Gilmour, Angelika Stein, Michelle A. T. Hildebrandt, Niels Weinhold, Gabriele Buda, Ramón García-Sanz, Waldemar Tomczak, Ulla Vogel, Andrés Jerez, Daria Zawirska, Marzena Wątek, Jonathan N. Hofmann, Stefano Landi, John J. Spinelli, Aleksandra Butrym, Abhishek Kumar, Joaquín Martínez-López, Sara Galimberti, María Eugenia Sarasquete, Edyta Subocz, Elzbieta Iskierka-Jażdżewska, Graham G. Giles, Malwina Rybicka-Ramos, Marcin Kruszewski, Niels Abildgaard, Francisco García Verdejo, Pedro Sánchez Rovira, Miguel Inacio da Silva Filho, Katalin Kadar, Małgorzata Razny, Wendy Cozen, Matteo Pelosini, Manuel Jurado, Parveen Bhatti, Marek Dudzinski, Agnieszka Druzd-Sitek, Enrico Orciuolo, Yang Li, Aaron D. Norman, Jan Maciej Zaucha, Rui Manuel Reis, Miroslaw Markiewicz, Juan José Rodríguez Sevilla, Vibeke Andersen, Krzysztof Jamroziak, Kari Hemminki, Sonja I. Berndt, Vicent Rajkumar, Grzegorz Mazur, Shaji K. Kumar, Paula Ludovico, Arnon Nagler, Stephen J. Chanock, Charles Dumontet, Mitchell J. Machiela, Judit Varkonyi, Nicola J. Camp, Elad Ziv, Annette Juul Vangsted, Elizabeth E. Brown, Daniele Campa, Celine M. Vachon, Mihai G. Netea, Federico Canzian, Asta Försti, Juan Sainz, Institut Català de la Salut, [Clavero E] Hematology Department, Virgen de las Nieves University Hospital, Granada, Spain. [Sanchez-Maldonado JM] Genomic Oncology Area, GENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, PTS, Granada, Spain. Instituto de Investigación Biosanataria IBs, Granada, Granada, Spain. [Macauda A] Genomic Epidemiology Group, German Cancer Research Center (DKFZ), Heidelberg, Germany. [Ter Horst R] Department of Internal Medicine and Radboud Center for Infectious Diseases, Radboud University Medical Center, GA Nijmegen, The Netherlands. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria. [Sampaio-Marques B] Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Braga, Portugal. [Jurczyszyn A] Plasma Cell Dyscrasias Center, Department of Hematology, Jagiellonian University Medical College, Kraków, Poland. [Jerez A] Experimental Hematology Unit, Vall d’Hebron Institute of Oncology (VHIO), Barcelona, Spain. Servei d’Hematologia, Vall d’Hebron Hospital Universitari, Barcelona, Spain, and Vall d'Hebron Barcelona Hospital Campus
- Subjects
fenómenos fisiológicos celulares::muerte celular::autofagia [FENÓMENOS Y PROCESOS] ,Cell Physiological Phenomena::Cell Death::Autophagy [PHENOMENA AND PROCESSES] ,Otros calificadores::Otros calificadores::/genética [Otros calificadores] ,Organic Chemistry ,Hemic and Lymphatic Diseases::Hematologic Diseases::Blood Protein Disorders::Paraproteinemias::Hemic and Lymphatic Diseases::Hematologic Diseases::Multiple Myeloma [DISEASES] ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,Mieloma múltiple - Aspectes genètics ,General Medicine ,Biological Factors::Biomarkers [CHEMICALS AND DRUGS] ,Catalysis ,factores biológicos::biomarcadores [COMPUESTOS QUÍMICOS Y DROGAS] ,Computer Science Applications ,multiple myeloma ,autophagy ,genetic variants ,genetic susceptibility ,Inorganic Chemistry ,All institutes and research themes of the Radboud University Medical Center ,Autofàgia ,Marcadors bioquímics ,Other subheadings::Other subheadings::/genetics [Other subheadings] ,Physical and Theoretical Chemistry ,enfermedades hematológicas y linfáticas::enfermedades hematológicas::trastornos de las proteínas sanguíneas::paraproteinemias::enfermedades hematológicas y linfáticas::enfermedades hematológicas::mieloma múltiple [ENFERMEDADES] ,Molecular Biology ,Spectroscopy - Abstract
Autophagy; Genetic variants; Multiple myeloma Autofagia; Variantes genéticas; Mieloma múltiple Autofàgia; Variants genètiques; Mieloma múltiple Multiple myeloma (MM) arises following malignant proliferation of plasma cells in the bone marrow, that secrete high amounts of specific monoclonal immunoglobulins or light chains, resulting in the massive production of unfolded or misfolded proteins. Autophagy can have a dual role in tumorigenesis, by eliminating these abnormal proteins to avoid cancer development, but also ensuring MM cell survival and promoting resistance to treatments. To date no studies have determined the impact of genetic variation in autophagy-related genes on MM risk. We performed meta-analysis of germline genetic data on 234 autophagy-related genes from three independent study populations including 13,387 subjects of European ancestry (6863 MM patients and 6524 controls) and examined correlations of statistically significant single nucleotide polymorphisms (SNPs; p < 1 × 10−9) with immune responses in whole blood, peripheral blood mononuclear cells (PBMCs), and monocyte-derived macrophages (MDM) from a large population of healthy donors from the Human Functional Genomic Project (HFGP). We identified SNPs in six loci, CD46, IKBKE, PARK2, ULK4, ATG5, and CDKN2A associated with MM risk (p = 4.47 × 10−4−5.79 × 10−14). Mechanistically, we found that the ULK4rs6599175 SNP correlated with circulating concentrations of vitamin D3 (p = 4.0 × 10−4), whereas the IKBKErs17433804 SNP correlated with the number of transitional CD24+CD38+ B cells (p = 4.8 × 10−4) and circulating serum concentrations of Monocyte Chemoattractant Protein (MCP)-2 (p = 3.6 × 10−4). We also found that the CD46rs1142469 SNP correlated with numbers of CD19+ B cells, CD19+CD3− B cells, CD5+IgD− cells, IgM− cells, IgD−IgM− cells, and CD4−CD8− PBMCs (p = 4.9 × 10−4−8.6 × 10−4) and circulating concentrations of interleukin (IL)-20 (p = 0.00082). Finally, we observed that the CDKN2Ars2811710 SNP correlated with levels of CD4+EMCD45RO+CD27− cells (p = 9.3 × 10−4). These results suggest that genetic variants within these six loci influence MM risk through the modulation of specific subsets of immune cells, as well as vitamin D3−, MCP-2−, and IL20-dependent pathways. This work was supported by the European Union’s Horizon 2020 research and innovation program, N° 856620 and by grants from the Instituto de Salud Carlos III and FEDER (Madrid, Spain; PI17/02256 and PI20/01845), Consejería de Transformación Económica, Industria, Conocimiento y Universidades and FEDER (PY20/01282), from the CRIS foundation against cancer, from the Cancer Network of Excellence (RD12/10 Red de Cáncer), from the Dietmar Hopp Foundation and the German Ministry of Education and Science (BMBF: CLIOMMICS [01ZX1309]), and from National Cancer Institute of the National Institutes of Health under award numbers: R01CA186646, U01CA249955 (EEB). This work was also funded d by Portuguese National funds, through the Foundation for Science and Technology (FCT)—project UIDB/50026/2020 and UIDP/50026/2020 and by the project NORTE-01-0145-FEDER-000055, supported by Norte Portugal Regional Operational Programme (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF).
- Published
- 2023
23. Identification of novel genetic loci for risk of multiple myeloma by functional annotation.
- Author
-
Macauda A, Briem K, Clay-Gilmour A, Cozen W, Försti A, Giaccherini M, Corradi C, Sainz J, Niazi Y, Ter Horst R, Li Y, Netea MG, Vogel U, Hemminki K, Slager SL, Varkonyi J, Andersen V, Iskierka-Jazdzewska E, Mártinez-Lopez J, Zaucha J, Camp NJ, Rajkumar SV, Druzd-Sitek A, Bhatti P, Chanock SJ, Kumar SK, Subocz E, Mazur G, Landi S, Machiela MJ, Jerez A, Norman AD, Hildebrandt MAT, Kadar K, Berndt SI, Ziv E, Buda G, Nagler A, Dumontet C, Raźny M, Watek M, Butrym A, Grzasko N, Dudzinski M, Rybicka-Ramos M, Matera EL, García-Sanz R, Goldschmidt H, Jamroziak K, Jurczyszyn A, Clavero E, Giles GG, Pelosini M, Zawirska D, Kruszewski M, Marques H, Haastrup E, Sánchez-Maldonado JM, Bertsch U, Rymko M, Raab MS, Brown EE, Hofmann JN, Vachon C, Campa D, and Canzian F
- Subjects
- Humans, Genetic Loci, Genetic Predisposition to Disease, Polymorphism, Single Nucleotide, Genome-Wide Association Study, Multiple Myeloma genetics
- Published
- 2023
- Full Text
- View/download PDF
24. Randomized phase II study of weekly carfilzomib 70 mg/m 2 and dexamethasone with or without cyclophosphamide in relapsed and/or refractory multiple myeloma patients.
- Author
-
Puertas B, González-Calle V, Sureda A, Moreno MJ, Oriol A, González E, Rosiñol L, López J, Escalante F, Martínez-Lopez J, Carrillo E, Clavero E, Ríos-Tamayo R, Rey-Bua B, González-Rodríguez AP, Dourdil V, De Arriba F, González S, Pérez-de-Oteyza J, Hernández MT, García-Mateo A, Bargay J, Bladé J, Lahuerta JJ, San Miguel JF, Ocio EM, and Mateos MV
- Subjects
- Humans, Aged, Lenalidomide therapeutic use, Treatment Outcome, Antineoplastic Combined Chemotherapy Protocols adverse effects, Cyclophosphamide adverse effects, Dexamethasone adverse effects, Multiple Myeloma drug therapy
- Abstract
In this randomized phase II study (GEM-KyCyDex, clinicaltrials gov. Identifier: NCT03336073), the combination of weekly carfilzomib 70 mg/m2, cyclophosphamide and dexamethasone (KCd) was compared to carfilzomib and dexamethasone (Kd) in relapsed/refractory multiple myeloma (RRMM) after 1-3 prior lines (PL). One hundred and ninety-seven patients were included and randomized 1:1 to receive KCd (97 patients) or Kd (100 patients) in 28-day cycles until progressive disease or unacceptable toxicity occurred. Patient median age was 70 years, and the median number of PL was one (range, 1-3). More than 90% of patients had previously been exposed to proteasome inhibitors, approximetely 70% to immunomodulators, and approximetely 50% were refractory to their last line (mainly lenalidomide) in both groups. After a median follow-up of 37 months, median progression-free survival (PFS) was 19.1 and 16.6 months in KCd and Kd, respectively (P=0.577). Of note, in the post hoc analysis of the lenalidomide-refractory population, the addition of cyclophosphamide to Kd resulted in a significant benefit in terms of PFS: 18.4 versus 11.3 months (hazard ratio =1.7, 95% confidence interval: 1.1-2.7; P=0.043). The overall response rate and the percentage of patients who achieved complete response was around 70% and 20% in both groups. The addition of cyclophosphamide to Kd did not result in any safety signal, except for severe infections (7% vs. 2%). In conclusion, the combination of cyclophosphamide with Kd 70 mg/m2 weekly does not improve outcomes as compared with Kd alone in RRMM after 1-3 PL, but a significant benefit in PFS was observed with the triplet combination in the lenalidomide-refractory population. The administration of weekly carfilzomib 70 mg/m2 was safe and convenient, and, overall, the toxicity was manageable in both arms.
- Published
- 2023
- Full Text
- View/download PDF
25. Polymorphisms within Autophagy-Related Genes as Susceptibility Biomarkers for Multiple Myeloma: A Meta-Analysis of Three Large Cohorts and Functional Characterization.
- Author
-
Clavero E, Sanchez-Maldonado JM, Macauda A, Ter Horst R, Sampaio-Marques B, Jurczyszyn A, Clay-Gilmour A, Stein A, Hildebrandt MAT, Weinhold N, Buda G, García-Sanz R, Tomczak W, Vogel U, Jerez A, Zawirska D, Wątek M, Hofmann JN, Landi S, Spinelli JJ, Butrym A, Kumar A, Martínez-López J, Galimberti S, Sarasquete ME, Subocz E, Iskierka-Jażdżewska E, Giles GG, Rybicka-Ramos M, Kruszewski M, Abildgaard N, Verdejo FG, Sánchez Rovira P, da Silva Filho MI, Kadar K, Razny M, Cozen W, Pelosini M, Jurado M, Bhatti P, Dudzinski M, Druzd-Sitek A, Orciuolo E, Li Y, Norman AD, Zaucha JM, Reis RM, Markiewicz M, Rodríguez Sevilla JJ, Andersen V, Jamroziak K, Hemminki K, Berndt SI, Rajkumar V, Mazur G, Kumar SK, Ludovico P, Nagler A, Chanock SJ, Dumontet C, Machiela MJ, Varkonyi J, Camp NJ, Ziv E, Vangsted AJ, Brown EE, Campa D, Vachon CM, Netea MG, Canzian F, Försti A, and Sainz J
- Subjects
- Humans, Leukocytes, Mononuclear pathology, Biomarkers, Immunoglobulin M, Autophagy, Multiple Myeloma genetics, Multiple Myeloma pathology
- Abstract
Multiple myeloma (MM) arises following malignant proliferation of plasma cells in the bone marrow, that secrete high amounts of specific monoclonal immunoglobulins or light chains, resulting in the massive production of unfolded or misfolded proteins. Autophagy can have a dual role in tumorigenesis, by eliminating these abnormal proteins to avoid cancer development, but also ensuring MM cell survival and promoting resistance to treatments. To date no studies have determined the impact of genetic variation in autophagy-related genes on MM risk. We performed meta-analysis of germline genetic data on 234 autophagy-related genes from three independent study populations including 13,387 subjects of European ancestry (6863 MM patients and 6524 controls) and examined correlations of statistically significant single nucleotide polymorphisms (SNPs; p < 1 × 10
-9 ) with immune responses in whole blood, peripheral blood mononuclear cells (PBMCs), and monocyte-derived macrophages (MDM) from a large population of healthy donors from the Human Functional Genomic Project (HFGP). We identified SNPs in six loci, CD46 , IKBKE , PARK2 , ULK4 , ATG5 , and CDKN2A associated with MM risk ( p = 4.47 × 10-4 -5.79 × 10-14 ). Mechanistically, we found that the ULK4rs6599175 SNP correlated with circulating concentrations of vitamin D3 ( p = 4.0 × 10-4 ), whereas the IKBKErs17433804 SNP correlated with the number of transitional CD24+ CD38+ B cells ( p = 4.8 × 10-4 ) and circulating serum concentrations of Monocyte Chemoattractant Protein (MCP)-2 ( p = 3.6 × 10-4 ). We also found that the CD46rs1142469 SNP correlated with numbers of CD19+ B cells, CD19+ CD3- B cells, CD5+ IgD- cells, IgM- cells, IgD- IgM- cells, and CD4- CD8- PBMCs ( p = 4.9 × 10-4 -8.6 × 10-4 ) and circulating concentrations of interleukin (IL)-20 ( p = 0.00082). Finally, we observed that the CDKN2Ars2811710 SNP correlated with levels of CD4+ EMCD45RO+ CD27- cells ( p = 9.3 × 10-4 ). These results suggest that genetic variants within these six loci influence MM risk through the modulation of specific subsets of immune cells, as well as vitamin D3- , MCP-2- , and IL20-dependent pathways.- Published
- 2023
- Full Text
- View/download PDF
26. Mechanochemically Scaled-Up Alpha Cyclodextrin Nanosponges: Their Safety and Effectiveness as Ethylene Scavenger.
- Author
-
Rupérez D, Gracia-Vallés N, Clavero E, Silva F, and Nerín C
- Abstract
Aiming at the development of a greener ethylene removal alternative, the goal of this study was to scale up and ensure the safety of α-cyclodextrin nanosponges (α-CD-NS) for further use as ethylene scavengers. The solvent-free synthesis of α-CD-NS was successfully scaled up using α-cyclodextrin and N,N'-carbonyldiimidazole as cross-linkers (1:4 molar ratio) by means of mechanical alloying using a PM 100 ball mill by focusing on varying the rotation frequency, as determined by FTIR-ATR, X-ray diffraction, and TGA. α-CD-NS washing optimization was performed in water by monitoring the imidazole concentration in the washing solution through the validation of a fast and sensitive HPLC-DAD method. After 6 h at 40 °C, all imidazole was extracted, allowing a faster and less energy-dependent extraction. α-CD-NS absorbent capacity and porosity were also evaluated through BET isotherms and ethylene absorption experiments using α-CD-NS and commercially available absorbents (zeolite and bentonite) were performed by means of gas chromatography (GC) coupled to a flame ionization detector (FID). With a 93 µL h
-1 kgadsorbent -1 ethylene removal capacity, α-CD-NS revealed the best ethylene scavenging activity when compared to the other absorbents, opening the doors for a safer, innovative, and eco-friendlier ethylene removal active packaging.- Published
- 2022
- Full Text
- View/download PDF
27. Measurable Residual Disease Assessed by Flow-Cytometry Is a Stable Prognostic Factor for Pediatric T-Cell Acute Lymphoblastic Leukemia in Consecutive SEHOP Protocols Whereas the Impact of Oncogenetics Depends on Treatment.
- Author
-
Vega-García N, Perez-Jaume S, Esperanza-Cebollada E, Vicente-Garcés C, Torrebadell M, Jiménez-Velasco A, Ortega M, Llop M, Abad L, Vagace JM, Minguela A, Pratcorona M, Sánchez-Garcia J, García-Calderón CB, Gómez-Casares MT, Martín-Clavero E, Escudero A, Riñón Martinez-Gallo M, Muñoz L, Velasco MR, García-Morin M, Català A, Pascual A, Velasco P, Fernández JM, Lassaletta A, Fuster JL, Badell I, Molinos-Quintana Á, Molinés A, Guerra-García P, Pérez-Martínez A, García-Abós M, Robles Ortiz R, Pisa S, Adán R, Díaz de Heredia C, Dapena JL, Rives S, Ramírez-Orellana M, and Camós M
- Abstract
Robust and applicable risk-stratifying genetic factors at diagnosis in pediatric T-cell acute lymphoblastic leukemia (T-ALL) are still lacking, and most protocols rely on measurable residual disease (MRD) assessment. In our study, we aimed to analyze the impact of NOTCH1, FBXW7, PTEN , and RAS mutations, the measurable residual disease (MRD) levels assessed by flow cytometry (FCM-MRD) and other reported risk factors in a Spanish cohort of pediatric T-ALL patients. We included 199 patients treated with SEHOP and PETHEMA consecutive protocols from 1998 to 2019. We observed a better outcome of patients included in the newest SEHOP-PETHEMA-2013 protocol compared to the previous SHOP-2005 cohort. FCM-MRD significantly predicted outcome in both protocols, but the impact at early and late time points differed between protocols. The impact of FCM-MRD at late time points was more evident in SEHOP-PETHEMA 2013, whereas in SHOP-2005 FCM-MRD was predictive of outcome at early time points. Genetics impact was different in SHOP-2005 and SEHOP-PETHEMA-2013 cohorts: NOTCH1 mutations impacted on overall survival only in the SEHOP-PETHEMA-2013 cohort, whereas homozygous deletions of CDKN2A / B had a significantly higher CIR in SHOP-2005 patients. We applied the clinical classification combining oncogenetics, WBC count and MRD levels at the end of induction as previously reported by the FRALLE group. Using this score, we identified different subgroups of patients with statistically different outcome in both Spanish cohorts. In SHOP-2005, the FRALLE classifier identified a subgroup of high-risk patients with poorer survival. In the newest protocol SEHOP-PETHEMA-2013, a very low-risk group of patients with excellent outcome and no relapses was detected, with borderline significance. Overall, FCM-MRD, WBC count and oncogenetics may refine the risk-stratification, helping to design tailored approaches for pediatric T-ALL patients., Competing Interests: MT reports travel and accommodation support from Novartis (outside the submitted work); travel and accommodation support from Jazz Pharma and Shire/Servier (outside the submitted work); and travel and accommodation support from Amgen (outside the submitted work). JLF is a consultant/advisory member for Amgen, Jazz Pharmaceuticals, and Novartis (outside the submitted work), receives honoraria for speaking at symposia from Amgen, Servier, Jazz Pharmaceuticals, and Pfizer (outside the submitted work) and support for attending symposia from Servier and Jazz Pharmaceuticals (outside the submitted work). AM discloses talk fees from Jazz Pharma and Shire/Servier outside the presented work and reports travel and accommodation support from Jazz Pharma, Shire/Servier, and Novartis (outside the submitted work). JD reports advisory board honorarium, speaker fees, and travel and accommodation support from Jazz Pharma and Shire/Servier; personal fees, advisory board honorarium, speaker fees, and travel and accommodation support from Novartis (outside the submitted work); advisory board honorarium, and travel and accommodation support from Amgen (outside the submitted work); advisory board honorarium, speaker fees, and travel and accommodation support from Celgene (outside the submitted work); advisory board honorarium, speaker fees, and travel and accommodation support from Sobi (outside the submitted work). SR reports advisory board honorarium, speaker fees, and travel and accommodation support from Jazz Pharma and Shire/Servier; personal fees, advisory board honorarium, speaker fees, and travel and accommodation support from Novartis (outside the submitted work); advisory board honorarium, and travel and accommodation support from Amgen (outside the submitted work); advisory board honorarium, speaker fees, and travel and accommodation support from Celgene (outside the submitted work). MC discloses talk fees from Shire/Servier outside the presented work. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Vega-García, Perez-Jaume, Esperanza-Cebollada, Vicente-Garcés, Torrebadell, Jiménez-Velasco, Ortega, Llop, Abad, Vagace, Minguela, Pratcorona, Sánchez-Garcia, García-Calderón, Gómez-Casares, Martín-Clavero, Escudero, Riñón Martinez-Gallo, Muñoz, Velasco, García-Morin, Català, Pascual, Velasco, Fernández, Lassaletta, Fuster, Badell, Molinos-Quintana, Molinés, Guerra-García, Pérez-Martínez, García-Abós, Robles Ortiz, Pisa, Adán, Díaz de Heredia, Dapena, Rives, Ramírez-Orellana, Camós and on behalf of the Biological Committee of the Group of Leukaemia of the Spanish Society of Paediatric Haematology Oncology (SEHOP Group).)
- Published
- 2021
- Full Text
- View/download PDF
28. Polymorphisms within the TNFSF4 and MAPKAPK2 Loci Influence the Risk of Developing Invasive Aspergillosis: A Two-Stage Case Control Study in the Context of the aspBIOmics Consortium.
- Author
-
Sánchez-Maldonado JM, Moñiz-Díez A, Ter Horst R, Campa D, Cabrera-Serrano AJ, Martínez-Bueno M, Garrido-Collado MDP, Hernández-Mohedo F, Fernández-Puerta L, López-Nevot MÁ, Cunha C, González-Sierra PA, Springer J, Lackner M, Alcazar-Fuoli L, Fianchi L, Aguado JM, Pagano L, López-Fernández E, Clavero E, Potenza L, Luppi M, Moratalla L, Solano C, Sampedro A, Cuenca-Estrella M, Lass-Flörl C, Pcraga Study Group, Canzian F, Loeffler J, Li Y, Einsele H, Netea MG, Vázquez L, Carvalho A, Jurado M, and Sainz J
- Abstract
Here, we assessed whether 36 single nucleotide polymorphisms (SNPs) within the TNFSF4 and MAPKAPK2 loci influence the risk of developing invasive aspergillosis (IA). We conducted a two-stage case control study including 911 high-risk patients diagnosed with hematological malignancies that were ascertained through the aspBIOmics consortium. The meta-analysis of the discovery and replication populations revealed that carriers of the TNFSF4
rs7526628T/T genotype had a significantly increased risk of developing IA ( p = 0.00022). We also found that carriers of the TNFSF4rs7526628T allele showed decreased serum levels of TNFSF14 protein ( p = 0.0027), and that their macrophages had a decreased fungicidal activity ( p = 0.048). In addition, we observed that each copy of the MAPKAPK2rs12137965G allele increased the risk of IA by 60% ( p = 0.0017), whereas each copy of the MAPKAPK2rs17013271T allele was estimated to decrease the risk of developing the disease ( p = 0.0029). Mechanistically, we found that carriers of the risk MAPKAPK2rs12137965G allele showed increased numbers of CD38+IgM-IgD- plasmablasts in blood ( p = 0.00086), whereas those harboring two copies of the allele had decreased serum concentrations of thymic stromal lymphopoietin ( p = 0.00097). Finally, we also found that carriers of the protective MAPKAPK2rs17013271T allele had decreased numbers of CD27-IgM-IgD- B cells ( p = 0.00087) and significantly lower numbers of CD14+ and CD14+CD16- cells ( p = 0.00018 and 0.00023). Altogether, these results suggest a role of the TNFSF4 and MAPKAPK2 genes in determining IA risk.- Published
- 2020
- Full Text
- View/download PDF
29. The clinical significance of stringent complete response in multiple myeloma is surpassed by minimal residual disease measurements.
- Author
-
Cedena MT, Martin-Clavero E, Wong S, Shah N, Bahri N, Alonso R, Barcenas C, Valeri A, Salazar Tabares J, Sanchez-Pina J, Cuellar C, Martin T, Wolf J, Lahuerta JJ, and Martinez-Lopez J
- Subjects
- Adult, Aged, Aged, 80 and over, Bone Marrow pathology, Data Accuracy, Female, Flow Cytometry methods, Follow-Up Studies, High-Throughput Nucleotide Sequencing methods, Humans, Immunoglobulin Light Chains blood, Immunoglobulin Light Chains genetics, Male, Middle Aged, Neoplasm, Residual, Plasma Cells immunology, Prognosis, Progression-Free Survival, Retrospective Studies, Multiple Myeloma therapy
- Abstract
Background: Stringent complete response (sCR) is used as a deeper response category than complete response (CR) in multiple myeloma (MM) but may be of limited value in the era of minimal residual disease (MRD) testing., Methods: Here, we used 4-colour multiparametric flow cytometry (MFC) or next-generation sequencing (NGS) of immunoglobulin genes to analyse and compare the prognostic impact of sCR and MRD monitoring. We included 193 treated patients in two institutions achieving CR, for which both bone marrow aspirates and biopsies were available., Results: We found that neither the serum free light chain ratio, clonality by immunohistochemistry (IHC) nor plasma cell bone marrow infiltration identified CR patients at distinct risk. Patients with sCR had slightly longer progression-free survival. Nevertheless, persistent clonal bone marrow disease was detectable using MFC or NGS and was associated with significantly inferior outcomes compared with MRD-negative cases., Conclusion: Our results confirm that sCR does not predict a different outcome and indicate that more sensitive techniques are able to identify patients with differing prognoses. We suggest that MRD categories should be implemented over sCR for the future classification of MM responses., Competing Interests: J Martinez-Lopez belongs to the speaker bureau of Adaptive Biotechnologies. This does not alter our adherence to PLOS ONE policies on sharing data and materials. The rest of the authors declare no competing financial interests.
- Published
- 2020
- Full Text
- View/download PDF
30. Similar plasma lipidomic profile in people living with HIV treated with a darunavir-based or an integrase inhibitor-based antiretroviral therapy.
- Author
-
Mena A, Clavero E, Díaz-Díaz JL, and Castro A
- Subjects
- Cross-Sectional Studies, Female, HIV Infections drug therapy, HIV Infections virology, HIV Integrase chemistry, Humans, Lipidomics, Male, Middle Aged, Viral Load, Darunavir therapeutic use, HIV drug effects, HIV Infections blood, HIV Integrase Inhibitors therapeutic use, HIV Protease Inhibitors therapeutic use, Lipids blood
- Abstract
Cardiovascular disease is an important cause of morbidity and mortality in people living with HIV (PLWH), who commonly experience lipid disturbances. The aim of this study was to determine whether the plasma lipidomic profile differs between PLWH receiving a darunavir-based ART and those receiving integrase inhibitor-based ART. This was a cross-sectional study of unselected patients for whom metabolomic analysis was performed using ultra-high-performance liquid chromatography coupled to mass spectrometry. Data for the two subgroups were compared by calculating the log2 of the fold change for each metabolite and then grouping these into the main lipid families. Sixty-two PLWH aged 49.3 ± 8.6 years (82% men) were included: 12 patients (19.4%) had hypertension, 8 (12.9%) had type 2 diabetes, 25 (41.0%) had dyslipidaemia and 9 (14.5%) were taking statins, without significant differences in all these variables between the two groups. Twenty-five (40.3%) received darunavir-based ART and 37 (59.7%) integrase inhibitor-based ART. Although the differences were not statistically significant, patients treated with darunavir-based ART had higher concentrations of total cholesterol (211 mg/dL vs 194 mg/dL), LDL-cholesterol (132 mg/dL vs 117 mg/dL) and triglycerides (155 mg/dL vs 122 mg/dL), and lower HDL-cholesterol concentration (50 mg/dL vs 52 mg/dL). The main lipid families and metabolites differed slightly between groups (log2-fold change; P-value): ceramides (-0.07; 0.49), phosphatidylinositols (-0.05; 0.63), diacylglycerols (0.10; 0.64), phosphatidylethanolamines (0.03; 0.78), triacylglycerols (0.27; 0.18) and lysophosphatidylethanolamines (0.03; 0.83). In the integrase inhibitor-based group, the use of tenofovir alafenamide fumarate significantly increases the majority of lipid fractions, when compared with tenofovir disoproxil fumarate. The lipidomic profile did not differ between PLWH treated with darunavir-based or integrase inhibitor-based ART. This was especially true for ceramides, which are involved in cardiovascular disease. Further studies are needed to study the impact of ART in lipidomic profile.
- Published
- 2019
- Full Text
- View/download PDF
31. Effect of different CO 2 concentrations on biomass, pigment content, and lipid production of the marine diatom Thalassiosira pseudonana.
- Author
-
Sabia A, Clavero E, Pancaldi S, and Salvadó Rovira J
- Subjects
- Aquatic Organisms growth & development, Aquatic Organisms metabolism, Diatoms chemistry, Lipids analysis, Biomass, Carbon Dioxide metabolism, Diatoms growth & development, Diatoms metabolism, Lipid Metabolism, Pigments, Biological metabolism
- Abstract
The marine diatom Thalassiosira pseudonana grown under air (0.04% CO
2 ) and 1 and 5% CO2 concentrations was evaluated to determine its potential for CO2 mitigation coupled with biodiesel production. Results indicated that the diatom cultures grown at 1 and 5% CO2 showed higher growth rates (1.14 and 1.29 div day-1 , respectively) and biomass productivities (44 and 48 mgAFDW L-1 day-1 ) than air grown cultures (with 1.13 div day-1 and 26 mgAFDW L-1 day-1 ). The increase of CO2 resulted in higher cell volume and pigment content per cell of T. pseudonana. Interestingly, lipid content doubled when air was enriched with 1-5% CO2 . Moreover, the analysis of the fatty acid composition of T. pseudonana revealed the predominance of monounsaturated acids (palmitoleic-16:1 and oleic-18:1) and a decrease of the saturated myristic acid-14:0 and polyunsaturated fatty acids under high CO2 levels. These results suggested that T. pseudonana seems to be an ideal candidate for biodiesel production using flue gases.- Published
- 2018
- Full Text
- View/download PDF
32. Dramatic resolution of disseminated pyoderma gangrenosum associated with monoclonal gammopathy after therapy with bortezomib and dexamethasone.
- Author
-
Velasco-Tamariz V, Carreño-Tarragona G, Tous-Romero F, Gil-de la Cruz E, Martín-Clavero E, and Rivera-Díaz R
- Subjects
- Adult, Anti-Inflammatory Agents therapeutic use, Antineoplastic Agents therapeutic use, Female, Humans, Middle Aged, Treatment Outcome, Bortezomib therapeutic use, Dexamethasone therapeutic use, Multiple Myeloma drug therapy, Paraproteinemias drug therapy, Pyoderma Gangrenosum drug therapy, Skin Ulcer drug therapy, Sweet Syndrome drug therapy
- Abstract
Pyoderma gangrenosum (PG) is an uncommon inflammatory and ulcerative skin disorder, which is commonly associated with systemic conditions such as inflammatory bowel disease, arthritis and haematological malignancies. It is widely stated that control of the underlying diseases may lead to resolution of PG. However, standard of care dictates that patients suffering with monoclonal gammopathy of undetermined significance or smouldering multiple myeloma (MM) should not receive therapy unless they progress to symptomatic MM. Here, we report a woman in her 40s with a disseminated corticodependent PG, resistant to any treatment attempted, including anti-tumoral necrosis factor (TNF) therapy in which bortezomib-dexamethasone regimen results in dramatic healing of all lesions in only a month. This case supports the belief that treatment of the underlying monoclonal gammopathy could be necessary when PG presents as an aggressive, non-responding skin disease., (© 2017 Medicalhelplines.com Inc and John Wiley & Sons Ltd.)
- Published
- 2017
- Full Text
- View/download PDF
33. Novel treatment strategy with autologous activated and expanded natural killer cells plus anti-myeloma drugs for multiple myeloma.
- Author
-
Leivas A, Perez-Martinez A, Blanchard MJ, Martín-Clavero E, Fernández L, Lahuerta JJ, and Martinez-Lopez J
- Abstract
This proof-of-concept single-arm open-label phase I clinical trial (NCT02481934) studied the safety and efficacy of multiple infusions of activated and expanded natural killer (NKAE) cells in combination with anti-myeloma drugs in multiple myeloma patients. It included five patients with relapsed or refractory MM who had received two to seven prior lines of therapy; NK cells were expanded for 3 weeks with K562-mb15-41BBL cells. Patients received four cycles of pharmacological treatment with two infusions of 7.5 × 10
6 NKAEs/kg per cycle. NKAE generation, expansion, and NK monitoring was assessed using flow cytometry. Eighteen clinical-grade NKAE cell GMP-grade products were generated to obtain 627 × 106 NKAEs (range: 315-919 × 106 ) for the first infusion and 943 × 106 (range: 471-1481 × 106 ) for the second infusion with 90% (±7%) purity. Neutropenia grade II occurred in two patients and was related to chemotherapy. Of the five patients, four showed disease stabilization before the end of NKAE treatment, and two showed a 50% reduction in bone marrow infiltration and a long-term (>1 y) response. The NKAE cells had a highly cytotoxic phenotype and high cytotoxicity in vitro . Infused NKAE cells were detected in bone marrow and peripheral blood after infusions. Ex vivo expansion of autologous NK cells is feasible, NKAE cells are clinically active and the multiple infusions are well tolerated in patients with relapsed or refractory myeloma.- Published
- 2016
- Full Text
- View/download PDF
34. Efficient harvesting of Chaetoceros calcitrans for biodiesel production.
- Author
-
Şirin S, Clavero E, and Salvadó J
- Subjects
- Batch Cell Culture Techniques methods, Cell Proliferation physiology, Cell Separation methods, Equipment Design, Equipment Failure Analysis, Flocculation, Fractionation, Field Flow, Microalgae isolation & purification, Batch Cell Culture Techniques instrumentation, Biofuels microbiology, Cell Separation instrumentation, Microalgae cytology, Microalgae growth & development
- Abstract
Harvesting is one of the key challenges to determine the feasibility of producing biodiesel from algae. This paper presents experimental results for a cost-effective system to harvest Chaetoceros calcitrans, using natural sedimentation, flocculation, and inducing pH. No efficient sedimentation of microalgal cells was observed only by gravity. By alkalinity-induced flocculation, at a pH value of 9.51, 86% recovery of the cells was achieved with a sedimentation rate of 125 cm/h and a concentration factor (CF) of 4 (volume/volume (v/v)) in 10 min. The maximum photochemical quantum yield of photosystem II (Fv/Fm) of concentrated cells was almost the same as fresh culture (0.621). Commercial flocculants, aluminium sulphate and poly-aluminium chloride (PAC), were also successful in harvesting the studied algal cells. Optimum concentration of aluminium sulphate (AS) could be concluded as 10 ppm with 87.6% recovery and 7.10 CF (v/v) in 30 min for cost-efficient harvesting, whereas for PAC it was 20 ppm with 74% recovery and 6.6 CF (v/v). Fv/Fm yields of concentrated cells with AS and PAC showed a 1% reduction compared to fresh culture. Mg+2 was the triggering ion for alkalinity-induced flocculation in the conditions studied. The rheology behaviour of the concentrated cells was Newtonian with values between 2.2×10(-3) and 2.3×10(-3) Pa s at 30°C.
- Published
- 2015
- Full Text
- View/download PDF
35. Interobserver variance in myelodysplastic syndromes with less than 5 % bone marrow blasts: unilineage vs. multilineage dysplasia and reproducibility of the threshold of 2 % blasts.
- Author
-
Font P, Loscertales J, Soto C, Ricard P, Novas CM, Martín-Clavero E, López-Rubio M, Garcia-Alonso L, Callejas M, Bermejo A, Benavente C, Ballesteros M, Cedena T, Calbacho M, Urbina R, Villarrubia J, Gil S, Bellón JM, Diez-Martin JL, and Villegas A
- Subjects
- Cell Count statistics & numerical data, Cell Lineage, Cytodiagnosis statistics & numerical data, Female, Humans, Male, Observer Variation, Prognosis, Reproducibility of Results, Blast Crisis pathology, Bone Marrow pathology, Myelodysplastic Syndromes diagnosis, Myelodysplastic Syndromes pathology
- Abstract
Previous studies have shown the reproducibility of the 2008 World Health Organization (WHO) classification in myelodysplastic syndromes (MDS), especially when multilineage dysplasia or excess of blasts are present. However, there are few data regarding the reproducibility of MDS with unilineage dysplasia. The revised International Prognostic Scoring System R-IPSS described two new morphological categories, distinguishing bone marrow (BM) blast cell count between 0-2 % and >2- < 5 %. This distinction is critical for establishing prognosis, but the reproducibility of this threshold is still not demonstrated. The objectives of our study were to explore the reliability of the 2008 WHO classification, regarding unilineage vs. multilineage dysplasia, by reviewing 110 cases previously diagnosed with MDS, and to study whether the threshold of ≤2 % BM blasts is reproducible among different observers. We used the same methodology as in our previous paper [Font et al. (2013) Ann Hematol 92:19-24], by encouraging investigators to include patients with <5 % BM blasts. Samples were collected from 11 hospitals and were evaluated by 11 morphologists. Each observer evaluated 20 samples, and each sample was analyzed independently by two morphologists. Discordance was observed in 36/108 suitable cases (33 %, kappa test 0.503). Diagnosis of MDS with unilineage dysplasia (refractory cytopenia with unilineage dysplasia (RCUD), refractory anemia with ring sideroblasts (RARS) or unclassifiable MDS) was assessed in 33 patients, by either of the two observers. We combined this series with the cases with RCUD or RARS included in our 2013 paper, thus obtaining 50 cases with unilineage dysplasia by at least one of the observers. The whole series showed very low agreement regarding RCUD (5/23, 21 %) and RARS (5/28, 18 %). Regarding BM blast count, the threshold of ≤2 % was not reproducible (discordance rate 32/108 cases, kappa test 0.277). Our study shows that among MDS WHO 2008 categories, interobserver discordance seems to be high in cases with unilineage dysplasia. We also illustrate that the threshold of ≤2 % BM blasts as settled by the R-IPSS may be not easy to reproduce by morphologists in real practice.
- Published
- 2015
- Full Text
- View/download PDF
36. Vibrating membrane filtration as improved technology for microalgae dewatering.
- Author
-
Nurra C, Clavero E, Salvadó J, and Torras C
- Subjects
- Filtration instrumentation, Hydrogen-Ion Concentration, Isoelectric Point, Permeability, Pilot Projects, Static Electricity, Water Purification instrumentation, Filtration methods, Membranes, Artificial, Microalgae metabolism, Vibration, Water Purification methods
- Abstract
The effect of shear-enhanced filtration by vibratory process in microalgae dewatering is presented in this paper. The aim of this research was to investigate the technical performance and improvement of vibrating membrane filtration compared with conventional tangential cross-flow filtration in microalgae concentration. An industrial-scale available commercial set-up was used. Several membrane materials as polyethersulfone, polyacrylonitrile, etc., and mean pore sizes (from 7000Da to 0.2μm) were tested and compared in both filtration set-ups. Experiments were carried-out with Nannochloropsis gaditana and Phaeodactylum tricornutum microalgae. It has been demonstrated that, even if the choice of the membrane depends on its cut-off, its material and the type of microalgae filtrated, dynamic filtration is always the best technology over a conventional one. If with conventional filtration permeability values were in the vicinity of 10L/h/m(2)/bar in steady state phase, with dynamic filtration these values increased to 30L/h/m(2)/bar or more., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
37. Potential pre-concentration methods for Nannochloropsis gaditana and a comparative study of pre-concentrated sample properties.
- Author
-
Şirin S, Clavero E, and Salvadó J
- Subjects
- Chitosan, Flocculation, Hydrogen-Ion Concentration, Particle Size, Rheology, Viscosity, Biofuels, Calcium metabolism, Cell Culture Techniques methods, Magnesium metabolism, Stramenopiles growth & development, Stramenopiles metabolism
- Abstract
We compared potential pre-concentration techniques for Nannochloropsis gaditana (Nng) by testing natural sedimentation; flocculation with aluminium sulphate, polyaluminium chloride and chitosan; and induced pH. Promising flocculation efficiencies and concentration factors were obtained in a short time with alkalinity-induced flocculation at an adjusted pH of 9.7 and with chitosan at an adjusted pH of 9.9 using a concentration of 30mgL(-1). The sedimentation rates of alkalinity-induced flocculation were also evaluated. Additionally, viscosity, particle size distribution and Ca/Mg ions were analysed for pre-concentrated samples of N. gaditana (Nng) and the previously studied Phaeodactylum tricornutum (Pht) which were obtained by various different harvesting methods under optimal conditions. The rheological properties of the concentrated algae suspensions of two microalgal species showed Newtonian behaviour. The mean diameters of the flocs were between 39 and 48μm. The Ca/Mg analysis showed that Mg(+2) is the triggering ion for alkalinity-induced flocculation in the conditions studied., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
38. Computer simulations of catanionic surfactants adsorbed at air/water interfaces. II. Full coverage.
- Author
-
Clavero E, Rodriguez J, and Laria D
- Abstract
We extend our previous molecular dynamics experiments [Rodriguez et al., J. Phys. Chem. B 109, 24427 (2005)] to the analysis of the adsorption of catanionic surfactants at water/air interfaces, at a surfactant coverage close to that of the saturated monolayer: 30.3 A(2) per headgroup. The mixture of surfactants investigated corresponds to equal amounts of dodecytrimethylammonium (DTA) and dodecylsulfate (DS). The structure of the interface is analyzed in terms of the local densities and orientational correlations of all relevant interfacial species. In accordance with experimental evidence, the DTA headgroups penetrate deeper into the aqueous substrate than the DS ones, although the average positions of all headgroups, with respect to the interface, lie in positions somewhat more external than the ones observed at lower coverages. Average tail tilts are close to 45 degrees. The characteristics of the headgroup-water substrate correlations are also analyzed using a tessellation procedure of the interface. The density and polarization responses of the interfacial domains closest to the DS headgroups are enhanced, compared to those adjacent to the DTA detergents. Dynamical aspects related to the diffusion and to the orientational correlations of different water layers in close contact with the surfactant are also investigated.
- Published
- 2007
- Full Text
- View/download PDF
39. Computer simulations of catanionic surfactants adsorbed at air/water interfaces.
- Author
-
Rodriguez J, Clavero E, and Laria D
- Abstract
Structural properties pertaining to the solvation of mixtures of dodecytrimethylammonium/dodecylsulfate adsorbed at water/air interfaces were studied using molecular dynamics techniques. Two different surfactant coverages, both in the submonolayer regime, were considered: an infinite-diluted catanionic pair and an equimolar mixture, at a surface concentration of 78.7 A2/headgroup. The most stable solvated structures for the single surfactant pair correspond to contact-head-ion-pairs (CHIP) at a distance close to 5 A. In addition, marginally stable solvent-separated-head-ion-pairs (SSHIP) at distances approximately 7 A were also observed. The mean free energy for the dissociation of CHIP was estimated to be approximately 1 kcal/mol. At finite surfactant concentrations, one observes a considerable degree of clustering between the amphiphiles, due to the strong Coulomb coupling between headgroups. The resulting spatial domains show asymmetric structures with linear dimensions comparable to the simulation box, suggesting the onset of percolative structures. The connectivity pattern of these domains was interpreted in terms of a simplified model consisting of two-dimensional charged Lennard-Jones spheres.
- Published
- 2005
- Full Text
- View/download PDF
40. Prophylaxis of transmission of hepatitis B virus with anti hepatitis B immune gamma ev in an allogeneic transplant of hematopoietic precursors.
- Author
-
Romero A, García J, Clavero E, López-Quiñones AR, Gallego T, and Jurado M
- Subjects
- Adult, Antiviral Agents administration & dosage, Aspergillosis etiology, Fatal Outcome, Female, Hematopoietic Stem Cell Transplantation adverse effects, Hepatitis B prevention & control, Hepatitis B transmission, Hepatitis B Vaccines administration & dosage, Humans, Hepatitis B drug therapy, Immunoglobulins administration & dosage, Transplantation, Homologous adverse effects
- Published
- 2001
41. Matching molecular diversity and ecophysiology of benthic cyanobacteria and diatoms in communities along a salinity gradient.
- Author
-
Nübel U, Garcia-Pichel F, Clavero E, and Muyzer G
- Subjects
- Cyanobacteria genetics, DNA, Bacterial analysis, DNA, Plant analysis, Diatoms genetics, Electrophoresis, Polyacrylamide Gel, Mexico, Molecular Sequence Data, Phylogeny, RNA, Bacterial analysis, RNA, Plant analysis, RNA, Ribosomal, 16S analysis, Sodium Chloride, Cyanobacteria classification, Diatoms classification, Ecology, Water Microbiology
- Abstract
The phylogenetic diversity of oxygenic phototrophic microorganisms in hypersaline microbial mats and their distribution along a salinity gradient were investigated and compared with the halotolerances of closely related cultivated strains. Segments of 16S rRNA genes from cyanobacteria and diatom plastids were retrieved from mat samples by DNA extraction and polymerase chain reaction (PCR), and subsequently analysed by denaturing gradient gel electrophoresis (DGGE). Sequence analyses of DNA from individual DGGE bands suggested that the majority of these organisms was related to cultivated strains at levels that had previously been demonstrated to correlate with characteristic salinity responses. Proportional abundances of amplified 16S rRNA gene segments from phylogenetic groupings of cyanobacteria and diatoms were estimated by image analysis of DGGE gels and were generally found to correspond to abundances of the respective morphotypes determined by microscopic analyses. The results indicated that diatoms accounted for low proportions of cells throughout, that the cyanobacterium Microcoleus chthonoplastes and close relatives dominated the communities up to a salinity of 11% and that, at a salinity of 14%, the most abundant cyanobacteria were related to highly halotolerant cultivated cyanobacteria, such as the recently established phylogenetic clusters of Euhalothece and Halospirulina. Although these organisms in cultures had previously demonstrated their ability to grow with close to optimal rates over a wide range of salinities, their occurrence in the field was restricted to the highest salinities investigated.
- Published
- 2000
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.