101 results on '"Cigdem, Ozkan"'
Search Results
2. Estimation of Time-to-Total Knee Replacement Surgery
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Cigdem, Ozkan, Chen, Shengjia, Zhang, Chaojie, Cho, Kyunghyun, Kijowski, Richard, and Deniz, Cem M.
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Electrical Engineering and Systems Science - Image and Video Processing - Abstract
A survival analysis model for predicting time-to-total knee replacement (TKR) was developed using features from medical images and clinical measurements. Supervised and self-supervised deep learning approaches were utilized to extract features from radiographs and magnetic resonance images. Extracted features were combined with clinical and image assessments for survival analysis using random survival forests. The proposed model demonstrated high discrimination power by combining deep learning features and clinical and image assessments using a fusion of multiple modalities. The model achieved an accuracy of 75.6% and a C-Index of 84.8% for predicting the time-to-TKR surgery. Accurate time-to-TKR predictions have the potential to help assist physicians to personalize treatment strategies and improve patient outcomes., Comment: 11 pages, 3 figures,4 tables, submitted to a conference
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- 2024
3. Effectiveness of a hybrid approach in integrating GLP-1 agonists and lifestyle guidance for obesity and pre-diabetes management: RWE retrospective study
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Hala Zakaria, Sheikha Alshehhi, Milena Caccelli, Cigdem Ozkan, Judy Kattan, Zeinab Jafaar, Remie Laborte, Sofia Aleabova, Noah Almarzooqi, Ali Hashemi, and Ihsan Almarzooqi
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Obesity ,GLP-1 agonists ,Hybrid care model ,Pre-diabetes ,Anti-Obesity pharmacology ,Weight loss ,Physiology ,QP1-981 ,Biochemistry ,QD415-436 - Abstract
Aim: Emerging anti-obesity pharmacotherapy provides an option to correct maladaptive physiological and hormonal changes associated with obesity. One of the widely used medications in this context is glucagon-like peptide 1 (GLP-1) agonists. However, the misuse of these medications without any guidance and monitoring of lifestyle modifications can lead to unfavorable outcomes. The study aims to evaluate the effectiveness of a hybrid care model, incorporating GLP-1 and GLP-1/GIP agonist therapies, in managing obese patients with/without pre-diabetes. This study showcases the midway results of a 6-month program, which includes a multidisciplinary care team and digital technology for continuous engagement and monitoring of patients, both in-clinic and remotely. Methods: In a retrospective observational study, 115 participants were treated with GLP-1s (semaglutide, tirzepatide, and liraglutide). Physicians, dietitians, and coaches worked together to support behavioral changes using a dedicated app provided to patients. At the care team end, an integrated portal enabled continuous data flow allowing for the care team to provide personalized care via chat at regular intervals. Data collected included food logs, continuous glucose monitoring (CGM), and digital biomarkers such as sleep and activity. Results: At the midpoint of the program, participants exhibited statistically significant improvements in various metabolic parameters. Mean weight reduction was 8 %, with significant reductions in BMI, fat mass, and cholesterol levels. 24 (20.9 %) of patients lost ≥5 % of body weight, 55 (47.8 %) patients lost ≥10 % weight, and 36 (31.3 %) patients lost ≥15 % weight. Sub-analysis of pre-diabetic patients (n=36) demonstrated substantial improvements, including control of pre-diabetes in 80.6 % of cases and reduced HbA1c levels back to normoglycemia (5.39 ± 0.27). Conclusion: The Zone.Health's program, which combines pharmacotherapy with continuous engagement and monitoring to enable sustainable lifestyle modifications, demonstrated significant improvements in weight, body composition, and metabolic markers. Pre-diabetes was also effectively addressed. It is necessary to conduct further research to assess the long-term sustainability and optimal adoption of such care models into clinical practice.
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- 2024
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4. Effectiveness of a hybrid technology enabled care model as measured by ICHOM standard set on established and managed type 2 diabetes already using medications: A RWE retrospective study
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Ihsan Almarzooqi, Hala Zakaria, Sofia Aleabova, Milena Caccelli, Cigdem Ozkan, Judith Skaf, Jestoni Bangayan, Dianne Catapang, Zeinab Jaafar, Ali Hashemi, and Yousef Said
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Remote Continuous Data Monitoring ,Diabetes ,Continuous Glucose Monitoring ,Data-driven personalized medicine ,Virtual monitoring ,HbA1c Reduction ,Physiology ,QP1-981 ,Biochemistry ,QD415-436 - Abstract
Aims: Diabetes is a pressing global health issue, demanding innovative strategies for improved treatment. However, traditional care often falls short of patient goals. To address this, digital health solutions, including smartphone apps and remote monitoring, have emerged as crucial in diabetes management. This study aims to assess a comprehensive intervention, combining remote continuous data monitoring (RCDM) with in-clinic care, for enhancing diabetes-related outcomes. Additionally, it seeks to evaluate the effectiveness of the digital RCDM component by comparing adherent and non-adherent patients. Methods: Conducted in the United Arab Emirates, a retrospective study involved 89 patients primarily on anti-diabetic medications. They were split into two groups based on adherence to RCDM. Over time, significant improvements were observed across various parameters. Results: Notably, patients exhibited weight loss (−4.0 ± 5.3, p
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- 2023
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5. Artificial intelligence in knee osteoarthritis: A comprehensive review for 2022
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Cigdem, Ozkan and Deniz, Cem M
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- 2023
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6. A spatial beam property analyzer based on dispersive crystal diffraction for low-emittance X-ray light sources
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Nazanin Samadi, Xianbo Shi, Cigdem Ozkan Loch, Juraj Krempasky, Michael Boege, Dean Chapman, and Marco Stampanoni
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Medicine ,Science - Abstract
Abstract The advent of low-emittance synchrotron X-ray sources and free-electron lasers urges the development of novel diagnostic techniques for measuring and monitoring the spatial source properties, especially the source sizes. This work introduces an X-ray beam property analyzer based on a multi-crystal diffraction geometry, including a crystal-based monochromator and a Laue crystal in a dispersive setting to the monochromator. By measuring the flat beam and the transmitted beam profiles, the system can provide a simultaneous high-sensitivity characterization of the source size, divergence, position, and angle in the diffraction plane of the multi-crystal system. Detailed theoretical modeling predicts the system’s feasibility as a versatile characterization tool for monitoring the X-ray source and beam properties. The experimental validation was conducted at a bending magnet beamline at the Swiss Light Source by varying the machine parameters. A measurement sensitivity of less than 10% of a source size of around 12 µm is demonstrated. The proposed system offers a compact setup with simple X-ray optics and can also be utilized for monitoring the electron source.
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- 2022
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7. A compact and cost-effective hard X-ray free-electron laser driven by a high-brightness and low-energy electron beam
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Prat, Eduard, Abela, Rafael, Aiba, Masamitsu, Alarcon, Arturo, Alex, Jürgen, Arbelo, Yunieski, Arrell, Christopher, Arsov, Vladimir, Bacellar, Camila, Beard, Carl, Beaud, Paul, Bettoni, Simona, Biffiger, Roger, Bopp, Markus, Braun, Hans-Heinrich, Calvi, Marco, Cassar, Ariana, Celcer, Tine, Chergui, Majed, Chevtsov, Pavel, Cirelli, Claudio, Citterio, Alessandro, Craievich, Paolo, Divall, Marta Csatari, Dax, Andreas, Dehler, Micha, Deng, Yunpei, Dietrich, Alexander, Dijkstal, Philipp, Dinapoli, Roberto, Dordevic, Sladana, Ebner, Simon, Engeler, Daniel, Erny, Christian, Esposito, Vincent, Ferrari, Eugenio, Flechsig, Uwe, Follath, Rolf, Frei, Franziska, Ganter, Romain, Garvey, Terence, Geng, Zheqiao, Gobbo, Alexandre, Gough, Christopher, Hauff, Andreas, Hauri, Christoph P., Hiller, Nicole, Hunziker, Stephan, Huppert, Martin, Ingold, Gerhard, Ischebeck, Rasmus, Janousch, Markus, Johnson, Philip J. M., Johnson, Steven L., Juranić, Pavle, Jurcevic, Mario, Kaiser, Maik, Kalt, Roger, Keil, Boris, Kiselev, Daniela, Kittel, Christoph, Knopp, Gregor, Koprek, Waldemar, Laznovsky, Michael, Lemke, Henrik T., Sancho, Daniel Llorente, Löhl, Florian, Malyzhenkov, Alexander, Mancini, Giulia Fulvia, Mankowsky, Roman, Marcellini, Fabio, Marinkovic, Goran, Martiel, Isabelle, Märki, Fabian, Milne, Christopher J., Mozzanica, Aldo, Nass, Karol, Orlandi, Gian Luca, Loch, Cigdem Ozkan, Paraliev, Martin, Patterson, Bruce, Patthey, Luc, Pedrini, Bill, Pedrozzi, Marco, Pradervand, Claude, Radi, Peter, Raguin, Jean-Yves, Redford, Sophie, Rehanek, Jens, Reiche, Sven, Rivkin, Leonid, Romann, Albert, Sala, Leonardo, Sander, Mathias, Schietinger, Thomas, Schilcher, Thomas, Schlott, Volker, Schmidt, Thomas, Seidel, Mike, Stadler, Markus, Stingelin, Lukas, Svetina, Cristian, Treyer, Daniel M., Trisorio, Alexandre, Vicario, Carlo, Voulot, Didier, Wrulich, Albin, Zerdane, Serhane, and Zimoch, Elke
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- 2020
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8. Consensus paper on the evaluation and treatment of resistant hypertension by the Turkish Society of Cardiology
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Asife Sahinarslan, Emine Gazi, Meryem Aktoz, Cigdem Ozkan, Gülay Ulusal Okyay, Ozgul Ucar Elalmis, Erdal Belen, Reviewers: Atila Bitigen, Ulver Derici, Neslihan Bascil Tutuncu, and Aylin Yildirir
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resistant hypertension ,evaluation ,treatment ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2020
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9. SwissFEL double bunch operation
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Martin Paraliev, Arturo Alarcon, Vladimir Arsov, Simona Bettoni, Roger Biffiger, Marco Boll, Hans Braun, Alessandro Citterio, Paolo Craievich, Andreas Josef Dax, Philipp Dijkstal, Sladana Dordevic, Eugenio Ferrari, Franziska Frei, Romain Ganter, Zheqiao Geng, Christopher Gough, Nicole Hiller, Martin Huppert, Rasmus Ischebeck, Pavle Juranic, Mario Jurcevic, Babak Kalantari, Roger Kalt, Boris Keil, Christoph Kittel, Waldemar Koprek, Daniel Llorente, Florian Löhl, Alexander Malyzhenkov, Fabio Marcellini, Goran Marinkovic, Gian Luca Orlandi, Cigdem Ozkan Loch, Marco Pedrozzi, Eduard Prat, Sven Reiche, Colette Rosenberg, Thomas Schietinger, Serguei Sidorov, Alexandre Trisorio, Carlo Vicario, Didier Voulot, Guanglei Wang, and Riccardo Zennaro
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Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
SwissFEL has a unique capability, among the normal conducting linac-based light sources, to simultaneously serve two separate undulator lines (Aramis and Athos) up to the machine repetition rate of 100 Hz using the double bunch operation mode. It increases twice the experiments throughput of the facility with modest additional investment. Two electron bunches spaced 28 ns apart are extracted from the cathode by two laser pulses with individually controlled repetition rates. The bunches are accelerated up to about 3 GeV in the main linac using the same rf macropulse. After separation, one bunch serves the Athos soft x-ray beamline and the other is further accelerated to serve the hard x-ray beamline – Aramis. A fast and high-stability beam kicker separates the two bunches without disturbing the electron beam and consequently the x-ray lasing. The timing and control system sets hybrid machine modes utilizing independent operation of the two undulator lines with individually programmed repetition rates. Beam diagnostics and feedback systems have to operate with two closely spaced bunches where the two beams share the same machine path. The low-level rf system manipulates the rf amplitude and phase within a fraction of the rf macropulse to provide decoupling of the acceleration parameters of the first and the second bunch. This manuscript presents measurements that show that the bunch separation does not degrade FEL lasing stability.
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- 2022
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10. Effects of different covariates and contrasts on classification of Parkinson's disease using structural MRI
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Cigdem, Ozkan, Beheshti, Iman, and Demirel, Hasan
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- 2018
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11. The Potential of Wave Energy Conversion to Mitigate Coastal Erosion from Hurricanes
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Cigdem Ozkan, Talea Mayo, and Davina L. Passeri
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wave energy conversion ,wave farm ,coastal erosion ,nearshore impact ,XBeach ,Naval architecture. Shipbuilding. Marine engineering ,VM1-989 ,Oceanography ,GC1-1581 - Abstract
Wave energy conversion technologies have recently attracted more attention as part of global efforts to replace fossil fuels with renewable energy resources. While ocean waves can provide renewable energy, they can also be destructive to coastal areas that are often densely populated and vulnerable to coastal erosion. There have been a variety of efforts to mitigate the impacts of wave- and storm-induced erosion; however, they are either temporary solutions or approaches that are not able to adapt to a changing climate. This study explores a green and sustainable approach to mitigating coastal erosion from hurricanes through wave energy conversion. A barrier island, Dauphin Island, off the coast of Alabama, is used as a test case. The potential use of wave energy converter farms to mitigate erosion due to hurricane storm surges while simultaneously generating renewable energy is explored through simulations that are forced with storm data using the XBeach model. It is shown that wave farms can impact coastal morphodynamics and have the potential to reduce dune and beach erosion, predominantly in the western portion of the island. The capacity of wave farms to influence coastal morphodynamics varies with the storm intensity.
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- 2022
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12. The relations between sector features, pricing behavior, and the concept of social responsibility: An example of the accommodation sector
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Cigdem Ozkan
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demand ,cost ,price ,pricing ,accommodation ,fixed variable ,Business ,HF5001-6182 - Abstract
The aim of this study is to examine the relations between the cost structure of sector features and pricing behaviors through the example of the accommodation sector in terms of social responsibility. This has benefited from both the analytical geometry and the income and cost data of a real accommodation enterprise. The findings point out this situation: In the accommodation sector, the fixed costs are high, and the variable costs are low. Thus, the effects of the cost in determining the optimal price, in view of the short term, are at a very low level. There is such a very close relationship between these facts that managers of accommodation enterprises allow more limited time to the subject concerning pricing, instead of to internal matters of the company. In addition, this structure of the sector has an important role in the prevalence of an error in the public opinion that accommodation enterprises allow prohibitive (excessive) prices.
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- 2020
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13. A Case Report: Why Continuous Glucose Monitoring in Conjunction with the GluCare. Health Care Model is Important in a Patient Newly Diagnosed with Type 2 Diabetes
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Cigdem Ozkan, Yousef Said, Milena Caccelli, Begum Demircan, Yasmeen Manea, Joelle Debs, Carolyn Palsky, Ali Hashemi, and Ihsan Almarzooqi
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General Medicine - Published
- 2023
14. Evaluation of Serum Omentin-1 Levels and Atherosclerotic Risk Factors in Patients with Prolactinoma
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Erdi Zuleyha Can, Cigdem Ozkan, Ceylan Mustafa Ozgur, Guzel Hamza Eren, Gizem Ercan, Giray Bozkaya, and Adibelli Zehra Hilal
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General Medicine - Published
- 2023
15. Celiac disease and autoimmune thyroid diseases
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Cigdem Ozkan and Ilhan Yetkin
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celiac disease ,autoimmune thyroid diseases ,management ,Medicine - Abstract
Celiac disease (CD) is a disease that characterized with small intestinal injury by the ingestion of gluten, the major protein of wheat and similar grains in genetically predisposed persons. The clinical presentation may be seen in a wide spectrum from severe malabsorption syndromes to silent asymptomatic cases. Diagnosis of celiac disease requires the finding of a typical mucosal lesion from small bowel biopsy such as villous atrophy and crypt hypertrophy and recovery of the histological findings and clinical improvement after introduction of gluten free diet. The occurrence of antibodies supports the diagnosis of celiac disease. Prevalence of other autoimmune diseases, including autoimmune thyroid diseases, has been reported to be higher than controls. The coexistence of autoimmune thyroid disease and celiac disease may related to genetic predisposition. Thus evaluation of CD patients for thyroid disorders may improve CD patients quality of life and may be important in their clinical management. Patients diagnosed with autoimmune diseases may develop other autoimmune disorders related with different organ systems in consequent years. Clinicians should be aware of this issue and evaluate patients for concomitant endocrinopathies. [Med-Science 2016; 5(4.000): 1055-8]
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- 2016
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16. Characterization of a Low-Cost Plastic Fiber Array Detector for Proton Beam Dosimetry.
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Cigdem Ozkan Loch, Michael Alexander Eichenberger, Michele Togno, Simon Pascal Zinsli, Martina Egloff, Angela Papa, Rasmus Ischebeck, Antony J. Lomax, Peter Peier, and Sairos Safai
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- 2020
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17. A spatial beam property analyzer based on dispersive crystal diffraction for low-emittance X-ray light sources
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Samadi, Nazanin, primary, shi, Xianbo, additional, Loch, Cigdem Ozkan, additional, Krempasky, Juraj, additional, Boege, Michael, additional, Chapman, Dean, additional, and Stampanoni, Marco, additional
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- 2022
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18. Abstract #1406876: Use of Continuous Glucose Monitoring in Conjunction with the GluCare Health Care Model in Patients with Prediabetes
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Cigdem Ozkan, Yousef Said, Milena Caccelli, Sofia Aleabova, Viswanathan Munirathinam, Yasmeen Manea, Rana Sultan, Carolyn Palsky, Ali Hashemi, and Ihsan Almarzooqi
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Endocrinology ,Endocrinology, Diabetes and Metabolism - Published
- 2023
19. A compact and cost-effective hard X-ray free-electron laser driven by a high-brightness and low-energy electron beam
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Claudio Cirelli, Rafael Abela, Thomas J. Schmidt, Vladimir Arsov, Eduard Prat, Leonardo Sala, M. Aiba, B. Keil, Gian Luca Orlandi, Karol Nass, Luc Patthey, Marco Calvi, F. Marcellini, Rolf Follath, Terence Garvey, Daniela Kiselev, Martin Paraliev, Alexander Dietrich, Christian Erny, Steven L. Johnson, Albert Romann, Arturo Alarcon, Peter Radi, Henrik T. Lemke, Micha Dehler, Pavel Chevtsov, Bruce D. Patterson, Martin Huppert, Maik Kaiser, J. Alex, Jean-Yves Raguin, S. Redford, Christoph Kittel, Mathias Sander, Fabian Märki, Christopher Arrell, Jens Rehanek, Zheqiao Geng, Thomas Schietinger, A. Wrulich, Claude Pradervand, Simona Bettoni, Roger Biffiger, Simon Ebner, Elke Zimoch, Cigdem Ozkan Loch, Sladana Dordevic, Majed Chergui, C. Svetina, Gregor Knopp, Vincent Esposito, D. Treyer, Roger Kalt, C. Gough, A. Trisorio, A. Hauff, Paul Beaud, Hans-Heinrich Braun, Alexandre Gobbo, G. Marinkovic, Roberto Dinapoli, Rasmus Ischebeck, Marco Pedrozzi, Daniel Llorente Sancho, W. Koprek, Alexander Malyzhenkov, Eugenio Ferrari, Leonid Rivkin, Philip J. M. Johnson, Yunieski Arbelo, Romain Ganter, Mike Seidel, Carlo Vicario, A. Citterio, Roman Mankowsky, Gerhard Ingold, L. Stingelin, F. Frei, M. Bopp, Carl Beard, Stephan Hunziker, Florian Löhl, Ariana Cassar, Volker Schlott, Philipp Dijkstal, Paolo Craievich, Didier Voulot, Giulia F. Mancini, Sven Reiche, Daniel Engeler, Aldo Mozzanica, Pavle Juranić, Andreas Dax, Uwe Flechsig, Christopher J. Milne, Serhane Zerdane, Markus Janousch, Yunpei Deng, M. Jurcevic, Isabelle Martiel, Nicole Hiller, Tine Celcer, T. Schilcher, Christoph P. Hauri, Michael Laznovsky, M. Stadler, Bill Pedrini, Camila Bacellar, and Marta Csatari Divall
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Brightness ,Population ,02 engineering and technology ,Radiation ,01 natural sciences ,law.invention ,010309 optics ,Optics ,law ,0103 physical sciences ,Thermal emittance ,education ,single ,Physics ,education.field_of_study ,business.industry ,Free-electron laser ,021001 nanoscience & nanotechnology ,Laser ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,radiation ,Cathode ray ,Physics::Accelerator Physics ,statistical properties ,0210 nano-technology ,business ,Lasing threshold - Abstract
We present the first lasing results of SwissFEL, a hard X-ray free-electron laser (FEL) that recently came into operation at the Paul Scherrer Institute in Switzerland. SwissFEL is a very stable, compact and cost-effective X-ray FEL facility driven by a low-energy and ultra-low-emittance electron beam travelling through short-period undulators. It delivers stable hard X-ray FEL radiation at 1-A wavelength with pulse energies of more than 500 μJ, pulse durations of ~30 fs (root mean square) and spectral bandwidth below the per-mil level. Using special configurations, we have produced pulses shorter than 1 fs and, in a different set-up, broadband radiation with an unprecedented bandwidth of ~2%. The extremely small emittance demonstrated at SwissFEL paves the way for even more compact and affordable hard X-ray FELs, potentially boosting the number of facilities worldwide and thereby expanding the population of the scientific community that has access to X-ray FEL radiation. The first lasing results at SwissFEL, an X-ray free-electron laser, are presented, highlighting the facility’s unique capabilities. A general comparison to other major facilities is also provided.
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- 2020
20. Is hypoprolactinemia also associated with sexual dysfunction?
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Erdi Zuleyha Can and Cigdem Ozkan
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Sexual dysfunction ,business.industry ,medicine ,Physiology ,medicine.symptom ,medicine.disease ,business ,Hypoprolactinemia - Published
- 2021
21. Assesment of serum TSH concentrations in hypothyroid elderly patients (aged 75 and above) under levothyroxine treatment
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Mustafa Ubay and Cigdem Ozkan
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medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,Levothyroxine ,business ,Gastroenterology ,medicine.drug - Published
- 2021
22. Evaluation of awareness about requirement of anti-obesity pharmacotheraphy before weight loss surgery in a tertiary outpatient Endocrine Clinic in Turkey
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Erdi Zuleyha Can, Koray Bas, Ozturk Ahmet Mucteba, and Cigdem Ozkan
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Pediatrics ,medicine.medical_specialty ,business.industry ,Anti obesity ,medicine ,Endocrine system ,Weight Loss Surgery ,business - Published
- 2021
23. 46 XX male syndrome with hypogonadotropic hypogonadism: A case report
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Ferda Percin, Göksun Ayvaz, Cigdem Ozkan, Mehmet Muhittin Yalcin, Nuri Cakir, Alev Eroglu Altinova, Ayhan Karakoç, and Mujde Akturk
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Infertility ,Pediatrics ,medicine.medical_specialty ,endocrine system ,Pituitary macroadenoma ,medicine.drug_class ,XX male syndrome ,lcsh:Medicine ,030209 endocrinology & metabolism ,Case Report ,03 medical and health sciences ,0302 clinical medicine ,Hypergonadotropic hypogonadism ,Hypogonadotropic hypogonadism ,Pituitary adenoma ,Medicine ,46 XX male ,hypogonadism ,Testosterone ,lcsh:R5-920 ,030219 obstetrics & reproductive medicine ,business.industry ,infertility ,46 xx male ,lcsh:R ,medicine.disease ,Gonadotropin ,business ,lcsh:Medicine (General) ,General Economics, Econometrics and Finance ,hormones, hormone substitutes, and hormone antagonists - Abstract
We report a 46 XX male syndrome diagnosed after failure of gonadotropin therapy taken for hypogonadotropic hypogonadism due to a pituitary macroadenoma. A 39-year-old man with a non-functioning pituitary macroadenoma was admitted to our clinic due to vision loss and infertility. After pituitary surgery, vision loss improved while infertility still existed. Low testosterone levels without elevated gonadotropins were established suggesting hypogonadotropic hypogonadism due to pituitary adenoma. Gonadotropin treatment was initiated. There was no response to treatment after 12 months. A karyotype analysis was ordered to investigate other causes of infertility. Karyotype analysis showed a 46 XX male syndrome that can explain the failure of gonadotropin therapy. Testosterone therapy was started instead of gonadotropin therapy. 46 XX male syndrome usually presents with hypergonadotropic hypogonadism. However, in our case, it presented with hypogonadotropic hypogonadism due to pituitary mass not responding to gonadotropin therapy. It is important to keep in mind to obtain a genetic analysis of patients whose gonadotropin therapy failed, even if their gonadotropin levels are not elevated.
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- 2019
24. The renewable wave energy resource in coastal regions of the Florida peninsula
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Talea Mayo and Cigdem Ozkan
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geography ,geography.geographical_feature_category ,060102 archaeology ,Renewable Energy, Sustainability and the Environment ,business.industry ,020209 energy ,Ranging ,06 humanities and the arts ,02 engineering and technology ,Wave equation ,Atmospheric sciences ,Power (physics) ,Renewable energy ,Peninsula ,Wind wave ,0202 electrical engineering, electronic engineering, information engineering ,Environmental science ,0601 history and archaeology ,business ,Physics::Atmospheric and Oceanic Physics ,Energy (signal processing) ,Wave power - Abstract
Recently there has been a global effort to increase the utilization of renewable energy resources. In this study, we use observed data to estimate the ocean wave power available in coastal Florida. We find that average values ranging from 2.073 to 6.939 kW/m are available annually. It is shown that these values vary spatially; regions in the Atlantic Ocean have more available wave power than those in the Gulf of Mexico. Average annual wave power also varies temporally, likely due to meteorological events, indicating that changes in the climate may have significant impacts on available wave power. Available wave power is estimated using a spectral wave power equation, which requires sparsely available spectral wave density data. Wave power is more commonly estimated using a standard wave equation, which simplifies the required parameters to wave heights and wave periods. Here, we use both equations in order to assess the impact of this simplification. We find that the estimated wave power values calculated using the two equations differ considerably; using the simplified equation underestimates available wave power by an average of 17%. The degree of underestimation varies spatially, thus we recommend using the spectral wave power equation for ocean wave power assessment whenever possible.
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- 2019
25. SwissFEL: The Swiss X-ray Free Electron Laser
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Christopher J. Milne, Thomas Schietinger, Masamitsu Aiba, Arturo Alarcon, Jürgen Alex, Alexander Anghel, Vladimir Arsov, Carl Beard, Paul Beaud, Simona Bettoni, Markus Bopp, Helge Brands, Manuel Brönnimann, Ingo Brunnenkant, Marco Calvi, Alessandro Citterio, Paolo Craievich, Marta Csatari Divall, Mark Dällenbach, Michael D’Amico, Andreas Dax, Yunpei Deng, Alexander Dietrich, Roberto Dinapoli, Edwin Divall, Sladana Dordevic, Simon Ebner, Christian Erny, Hansrudolf Fitze, Uwe Flechsig, Rolf Follath, Franziska Frei, Florian Gärtner, Romain Ganter, Terence Garvey, Zheqiao Geng, Ishkhan Gorgisyan, Christopher Gough, Andreas Hauff, Christoph P. Hauri, Nicole Hiller, Tadej Humar, Stephan Hunziker, Gerhard Ingold, Rasmus Ischebeck, Markus Janousch, Pavle Juranić, Mario Jurcevic, Maik Kaiser, Babak Kalantari, Roger Kalt, Boris Keil, Christoph Kittel, Gregor Knopp, Waldemar Koprek, Henrik T. Lemke, Thomas Lippuner, Daniel Llorente Sancho, Florian Löhl, Carlos Lopez-Cuenca, Fabian Märki, Fabio Marcellini, Goran Marinkovic, Isabelle Martiel, Ralf Menzel, Aldo Mozzanica, Karol Nass, Gian Luca Orlandi, Cigdem Ozkan Loch, Ezequiel Panepucci, Martin Paraliev, Bruce Patterson, Bill Pedrini, Marco Pedrozzi, Patrick Pollet, Claude Pradervand, Eduard Prat, Peter Radi, Jean-Yves Raguin, Sophie Redford, Jens Rehanek, Julien Réhault, Sven Reiche, Matthias Ringele, Jochen Rittmann, Leonid Rivkin, Albert Romann, Marie Ruat, Christian Ruder, Leonardo Sala, Lionel Schebacher, Thomas Schilcher, Volker Schlott, Thomas Schmidt, Bernd Schmitt, Xintian Shi, Markus Stadler, Lukas Stingelin, Werner Sturzenegger, Jakub Szlachetko, Dhanya Thattil, Daniel M. Treyer, Alexandre Trisorio, Wolfgang Tron, Seraphin Vetter, Carlo Vicario, Didier Voulot, Meitian Wang, Thierry Zamofing, Christof Zellweger, Riccardo Zennaro, Elke Zimoch, Rafael Abela, Luc Patthey, and Hans-Heinrich Braun
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X-ray free electron laser ,linac ,X-rays ,undulator ,SwissFEL ,X-ray optics ,X-ray photon diagnostics ,ultrafast X-ray science ,X-ray detector ,JUNGFRAU ,serial femtosecond crystallography ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The SwissFEL X-ray Free Electron Laser (XFEL) facility started construction at the Paul Scherrer Institute (Villigen, Switzerland) in 2013 and will be ready to accept its first users in 2018 on the Aramis hard X-ray branch. In the following sections we will summarize the various aspects of the project, including the design of the soft and hard X-ray branches of the accelerator, the results of SwissFEL performance simulations, details of the photon beamlines and experimental stations, and our first commissioning results.
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- 2017
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26. The ACHIP experimental chambers at the Paul Scherrer Institut
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Simona Bettoni, Joshua McNeur, Christian David, Sven Reiche, Martin Bednarzik, F. Frei, Albert Romann, Terence Garvey, Vitaliy A. Guzenko, Simona Borrelli, Blagoj Sarafinov, Hans-Heinrich Braun, Eugenio Ferrari, Nicole Hiller, Eduard Prat, Gian Luca Orlandi, Marco Calvi, Micha Dehler, Rasmus Ischebeck, Leonid Rivkin, Peter Hommelhoff, and Cigdem Ozkan-Loch
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Physics ,Nuclear and High Energy Physics ,Interaction point ,Positioning system ,010308 nuclear & particles physics ,business.industry ,Electrical engineering ,Measure (physics) ,Free-electron laser ,Chip ,01 natural sciences ,0103 physical sciences ,Physics::Accelerator Physics ,010306 general physics ,business ,Instrumentation ,Beam (structure) - Abstract
The Accelerator on a Chip International Program (ACHIP) is an international collaboration, funded by the Gordon and Betty Moore Foundation, with the goal of demonstrating that laser-driven accelerator can be integrated on a chip to fully build an accelerator based on dielectric structures. PSI will provide access to the high brightness electron beam of SwissFEL to test structures, approaches and methods towards achieving the final goal of the project. In this contribution, we will describe the two interaction chambers installed on SwissFEL to perform the proof-of-principle experiments. In particular, we will present the positioning system for the samples, the magnets needed to focus the beam to sub-micrometer dimensions and the diagnostics to measure beam properties at the interaction point.
- Published
- 2018
27. Synthesis of novel calix[4]arene
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Seyda Cigdem, Ozkan, Fatma, Aksakal, and Aydan, Yilmaz
- Abstract
In this study, novel
- Published
- 2020
28. Assessment of the awareness of cancer screening in patients with diabetes mellitus
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Cigdem ozkan
- Subjects
medicine.medical_specialty ,business.industry ,Diabetes mellitus ,Internal medicine ,Cancer screening ,medicine ,In patient ,medicine.disease ,business - Published
- 2020
29. Acute Complications and Pregnancy Outcomes with Continuous Subcutaneous Insulin Infusion Therapy in Pregnant Women with Type 1 Diabetes Mellitus
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Ayhan Karakoç, Fusun Balos Toruner, Alev Eroğlu Altinova, Nuri Cakir, Göksun Ayvaz, Ilhan Yetkin, Ethem Turgay Cerit, Mujde Akturk, Cigdem Ozkan, Mehmet Muhittin Yalcin, Ceyla Konca Değertekin, and Işılay Kalan Sari
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Type 1 diabetes ,medicine.medical_specialty ,Infusion therapy ,business.industry ,Endocrinology, Diabetes and Metabolism ,Internal medicine ,Internal Medicine ,Medicine ,business ,medicine.disease ,Pregnancy outcomes ,Subcutaneous insulin - Abstract
Objective: Pregnant women with type 1 diabetes mellitus (T1DM) have increased risk of fetal, maternal, and perinatal complications. In this report, we aimed to evaluate the effects of continuous subcutaneous insulin infusion (CSII) therapy on pregnancy outcomes, glycemic control, and acute complications in pregnant women with T1DM. Material and Methods: We retrospectively analyzed the data of 15 women with T1DM who were on CSII therapy during their pregnancy, and who were followed up at our clinic between 2008 and 2014. Acute complications, fetal/maternal, and perinatal complications, and glycemic control were analyzed. Results: The mean age of the patients was 28.2 +/- 3.6 years, and the mean duration of diabetes was 8 +/- 5.4 years. We did not observe severe hypoglycemic episodes and diabetic ketoacidosis during their pregnancy. The mean HbA1c levels at 4-8 weeks of pregnancy decreased from 7.4 +/- 1.3% to 6.3 +/- 0.7% at 34-38 weeks of pregnancy. The mean duration of pregnancy and neonatal birth weight were 37.1 +/- 1.2 weeks and 3.537 +/- 794 g, respectively. There were no stillbirths, perinatal infant deaths, or congenital malformations noted. There were two preterm births due to preeclampsia, one of whom had a low birth weight (1.800 g). We recorded one macrosomic baby (4.730 g). Conclusion: We observed that glycemic control improved with CSII therapy during pregnancy. We did not detect severe hypoglycemia or diabetic ketoacidosis in our research. In pregnant women with T1DM who had inadequate glycemic control with multiple daily insulin injection therapy, CSII might be a safe and appropriate treatment regimen.
- Published
- 2020
30. Turkish Society of Cardiology Consensus Paper on Evaluation and Treatment of Resistant Hypertension
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Aylin Yildirir, Ozgul Ucar Elalmis, Emine Gazi, Erdal Belen, Gülay Ulusal Okyay, Asife Sahinarslan, Ulver Derici, Reviewers Atila Bitigen, Meryem Aktoz, Neslihan Bascil Tutuncu, and Cigdem Ozkan
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medicine.medical_specialty ,business.industry ,Turkish ,Family medicine ,medicine ,language ,Resistant hypertension ,MEDLINE ,Cardiology and Cardiovascular Medicine ,business ,language.human_language - Published
- 2020
31. Characterization of a Low-Cost Plastic Fiber Array Detector for Proton Beam Dosimetry
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Michael Alexander Eichenberger, Rasmus Ischebeck, Cigdem Ozkan Loch, Peter Peier, Antony J. Lomax, Martina Egloff, Michele Togno, Simon Pascal Zinsli, Sairos Safai, and Angela Papa
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Materials science ,beam monitoring ,dosimeter ,Biochemistry ,Article ,030218 nuclear medicine & medical imaging ,Analytical Chemistry ,03 medical and health sciences ,0302 clinical medicine ,Optics ,Proton Therapy ,Dosimetry ,Electrical and Electronic Engineering ,Radiometry ,Pencil-beam scanning ,Instrumentation ,Proton therapy ,Image resolution ,Dosimeter ,protons ,business.industry ,Detector ,electrons ,Atomic and Molecular Physics, and Optics ,Metrology ,scintillator ,030220 oncology & carcinogenesis ,Scintillation Counting ,business ,Plastics ,Beam (structure) ,fiber - Abstract
The Pencil Beam Scanning (PBS) technique in proton therapy uses fast magnets to scan the tumor volume rapidly. Changing the proton energy allows changing to layers in the third dimension, hence scanning the same volume several times. The PBS approach permits adapting the speed and/or current to modulate the delivered dose. We built a simple prototype that measures the dose distribution in a single step. The active detection material consists of a single layer of scintillating fibers (i.e., 1D) with an active length of 100 mm, a width of 18.25 mm, and an insignificant space (20 &mu, m) between them. A commercial CMOS-based camera detects the scintillation light. Short exposure times allow running the camera at high frame rates, thus, monitoring the beam motion. A simple image processing method extracts the dose information from each fiber of the array. The prototype would allow scaling the concept to multiple layers read out by the same camera, such that the costs do not scale with the dimensions of the fiber array. Presented here are the characteristics of the prototype, studied under two modalities: spatial resolution, linearity, and energy dependence, characterized at the Center for Proton Therapy (Paul Scherrer Institute), the dose rate response, measured at an electron accelerator (Swiss Federal Institute of Metrology).
- Published
- 2020
32. Cephalometric assessment of soft tissue morphology of patients with acromegaly
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Cumhur Tuncer, Emre Arslan, Kahraman Güngör, Alev Eroglu Altinova, Burcu Baloş Tuncer, Nehir Canigur Bavbek, Cigdem Ozkan, Fusun Balos Toruner, and Mujde Akturk
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Adult ,Male ,Chin ,Cephalometry ,Orthodontics ,Mandible ,Nose ,Facial Bones ,Acromegaly ,Maxilla ,medicine ,Humans ,Nasal Bone ,Craniofacial ,Skull Base ,business.industry ,Soft tissue ,Vertical Dimension ,Middle Aged ,Sulcus ,medicine.disease ,Dentistry, Orthodontics & Medicine ,Lip ,Sagittal plane ,medicine.anatomical_structure ,Face ,Prognathism ,Female ,business ,Orbit - Abstract
Aim To assess the sagittal soft tissue morphology of patients with acromegaly in comparison with a healthy control group. Methods Twenty-seven patients with acromegaly (11 male, 16 female; mean age 47.3 ± 11.5 years) and 30 healthy subjects (15 male, 15 female; mean age 42.2 ± 17.4 years) were included in the study. Linear and angular measurements were made on lateral cephalograms to evaluate soft tissue and skeletal characteristics. The intergroup comparisons were analysed with the Student’s t-test. Results Facial convexity (p < 0.01) and the nasolabial angle (p < 0.001) were reduced in patients with acromegaly, whereas nose prominence (p < 0.01), upper lip sulcus depth (p < 0.01), upper lip thickness (p < 0.01), basic upper lip thickness (p < 0.01), lower lip protrusion (p < 0.05), mentolabial sulcus depth (p < 0.05) and soft tissue chin thickness (p < 0.001) were increased. Anterior cranial base length (p < 0.05), the supraorbital ridge (p < 0.01), the length of the maxilla and mandible (p < 0.001, p < 0.01, respectively) were significantly increased, and mandibular prognathism was an acromegalic feature (p < 0.05). Conclusion Acromegalic coarsening and thickening of the craniofacial soft tissues was identified from lateral cephalograms, which may therefore contribute to early diagnosis when evaluated together with other changes caused by the disease.
- Published
- 2021
33. Transverse profile imager for ultrabright electron beams
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Rasmus Ischebeck, Eduard Prat, Vincent Thominet, and Cigdem Ozkan Loch
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Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
A transverse profile imager for ultrabright electron beams is presented, which overcomes resolution issues in present designs by observing the Scheimpflug imaging condition as well as the Snell-Descartes law of refraction in the scintillating crystal. Coherent optical transition radiation emitted by highly compressed electron bunches on the surface of the crystal is directed away from the camera, allowing to use the monitor for profile measurements of electron bunches suitable for X-ray free electron lasers. The optical design has been verified by ray tracing simulations, and the angular dependency of the resolution has been verified experimentally. An instrument according to the presented design principles has been used in the SwissFEL Injector Test Facility, and different scintillator materials have been tested. Measurements in conjunction with a transverse deflecting radiofrequency structure and an array of quadrupole magnets demonstrate a normalized slice emittance of 25 nm in the core of a 30 fC electron beam at a pulse length of 10 ps and a particle energy of 230 MeV.
- Published
- 2015
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34. Diagnosis of Bipolar Disease Using Correlation-Based Feature Selection with Different Classification Methods
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Cigdem, Ozkan, primary, Sulucay, Aysu, additional, Yilmaz, Arif, additional, Oguz, Kaya, additional, Demirel, Hasan, additional, Kitis, Omer, additional, Eker, Cagdas, additional, Gonul, Ali Saffet, additional, and Unay, Devrim, additional
- Published
- 2019
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35. Classification of Healthy Siblings of Bipolar Disorder Patients from Healthy Controls Using MRI
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Cigdem, Ozkan, primary, Soyak, Refik, additional, Aydeniz, Burhan, additional, Oguz, Kaya, additional, Demirel, Hasan, additional, Kitis, Omer, additional, Eker, Cagdas, additional, Gonul, Ali Saffet, additional, and Unay, Devrim, additional
- Published
- 2019
- Full Text
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36. The Performance of Local-Learning Based Clustering Feature Selection Method on the Diagnosis of Parkinson’s Disease Using Structural MRI
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Cigdem, Ozkan, primary, Demirel, Hasan, additional, and Unay, Devrim, additional
- Published
- 2019
- Full Text
- View/download PDF
37. Analysis of Treatment Outcomes of Patients With Cystic Prolactinomas: Report of Four Cases
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Zuleyha Can Erdi and Cigdem Ozkan
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Pediatrics ,medicine.medical_specialty ,business.industry ,Endocrinology, Diabetes and Metabolism ,Treatment outcome ,Medicine ,business - Abstract
Background: Prolactinomas are the most common functional pituitary adenomas. Treatment with dopamine agonists is considered as first-line therapy. Cystic prolactinoma is a variant prolactinoma. . It was assumed that since cystic area does not contain dopamine receptors, cystic prolactinomas would not respond to medical treatment. However, in recent years, it has been shown that cystic prolactinomas can also be treated with dopamine agonists, and medical treatment has become more preferred than surgical treatment. In this report, we aimed to evaluate the treatment effectiveness of patients with cystic prolactinomas who treated medically in our clinic. Materials and methods: Twenty-nine prolactinoma patients who were followed up in our hospital between 2019-2020 were evaluated retrospectively. Four patients (13%) were being followed up for cystic prolactinoma. Radiological images, laboratory findings, patients records were reviewed. Results: Four patients were being followed up for cystic prolactinoma and all were women. The average age of the patients followed up for cystic prolactinoma was 36 years. 3 patients (75%) had menstrual irregularity, 2 (50%) patients had galactorrhea, and 1 patient (25%) had headache at the time of admission. Tumor size regressed with medical treatment in two patients and the tumor disappeared completely in one patient. Although the symptomatic improvement and normalization of prolactin was achieved in one of our patients, the lesion did not shrink. We continued with medical treatment in this patient since there was no indication for surgery. Discussion: There was conflicting results in the literature regarding the management of cystic prolactinomas. Recently, dopamin agonist therapy is suggested as first- line treatment option in cystic prolactinomas. A study reported male predominance for cyst formation but we observed female predominance in our report. Faje et al. also reported female predominance in their study. Presentation of our patients were not different from solid prolactinomas. And although we evaluated very limited number of patients in our report, all of our patients respond to medical treatment which was consistent with recent literature.
- Published
- 2021
38. The impacts of wave energy conversion on coastal morphodynamics
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Cigdem Ozkan, Kelsey Perez, and Talea Mayo
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Environmental Engineering ,010504 meteorology & atmospheric sciences ,business.industry ,Fossil fuel ,010501 environmental sciences ,01 natural sciences ,Pollution ,Coastal erosion ,Renewable energy ,Environmental protection ,Greenhouse gas ,Wave farm ,Environmental Chemistry ,Environmental science ,Energy transformation ,Electricity ,business ,Waste Management and Disposal ,Beach morphodynamics ,0105 earth and related environmental sciences - Abstract
In recent decades, utilization of renewable energy resources, including ocean waves, has been promoted as part of a global effort to transition away from the use of fossil fuels. This is largely due to the accompanying greenhouse gas emissions and its catastrophic impacts on the environment, which are expected to worsen with the changing climate. Energy from ocean waves can be harnessed and converted into electricity with devices referred to as wave energy converters (WECs). Many researchers have studied the impacts of the WECs on coastal hydrodynamics, however, the impact on morphodynamics is not as well understood. In this paper, we review studies that assess the impacts of wave farms on coastal erosion. The results of a number of studies that focus on various locations around the world show that WECs often generate clean and renewable energy without negatively impacting local coastlines, and in fact often mitigate coastal erosion.
- Published
- 2019
39. Serum activities of dipeptidyl peptidase-4 and adenosine deaminase in polycystic ovary syndrome: association with obesity
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Serenay Elgün, Banu Aktas Yilmaz, Seda Kahraman, Cigdem Ozkan, Fusun Balos Toruner, Alev Eroglu Altinova, Mujde Akturk, and Mehmet Muhittin Yalcin
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Adult ,medicine.medical_specialty ,Adenosine Deaminase ,Endocrinology, Diabetes and Metabolism ,Dipeptidyl Peptidase 4 ,Inflammation ,Body Mass Index ,Young Adult ,Endocrinology ,Insulin resistance ,Adenosine deaminase ,Internal medicine ,Medicine ,Humans ,Obesity ,Dipeptidyl peptidase-4 ,biology ,business.industry ,nutritional and metabolic diseases ,Obstetrics and Gynecology ,medicine.disease ,Polycystic ovary ,Case-Control Studies ,biology.protein ,Female ,medicine.symptom ,Insulin Resistance ,business ,Polycystic Ovary Syndrome - Abstract
Dipeptidyl peptidase-4 (DPP-4) plays a role in metabolic and inflammatory diseases. Increased adenosine deaminase (ADA) has been suggested to induce insulin resistance and inflammation. We measured serum DPP-4 and ADA activities. Serum ADA activity was significantly higher in PCOS group (p=.006), whereas there was no difference in serum DPP-4 activity between the groups (p>.05). When the study subjects were divided into four groups in terms of obesity; an increasing trend in serum ADA activity between the groups was observed and ADA activity was significantly higher in overweight and obese patients with PCOS than nonobese controls (p=.016), there were no significant differences between the other groups (p>.05). A positive correlation was found between ADA and BMI in the whole group (p=.022). Multivariate regression analyses revealed that significant determinants were diastolic blood pressure, ADA, and the presence of PCOS for DPP-4 (R-2=0.344, F=9.079, p
- Published
- 2019
40. IDENTIFICATION OF PHYTOPHTHORA CRYPTOGEA PETHYBR.&LAFFFERTY AS THE CAUSAL AGENT OF ROOT AND CROWN ROT IN GERBERA CULTIVATION IN IZMIR, TURKEY
- Author
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Kahraman, Cigdem Ozkan, Yildiz, Figen, and Ege Üniversitesi
- Subjects
Gerbera jamesonii ,P. cryptogea ,cut flowers ,soilborne pathogen - Abstract
EgeUn###, Gerbera (Gerbera jamesonii H. Bolus ex. J.D. Hook) is one of the major cut flowers in Turkey, with approximately 114.00 ha and a production of 128 million per year. Gerbera decline was observed in several greenhouses in Izmir province of Turkey. Affected plants exhibited yellowing and wilting of leaves, growth deficiency and decline in flower quality. Infected roots and crowns rotted. A fungus-like organism was consistently isolated from necroses that appeared on roots and crowns of gerbera in Izmir in 2016. Diseased gerberas were collected from five districts where more than 90% amount of gerberas cultivating areas in Izmir. The pathogen was identified as Phytophthora cryptogea based on morphological characteristics and DNA sequence of internal transcribed spacer (ITS) region. Pathogenicity of the isolates were tested under growth chamber conditions (22-24 degrees C, 16/8h day/night) on 2-month-old gerbera 'Sky Line' seedlings. Isolates of P. cryptogea were pathogenic on gerberas that were infected soils via inoculated rice grains. After 3 weeks, root and crown rot, yellowing and wilting of leaves developed in plants that inoculated with P. cryptogea. This study demonstrated that P. cryptogea causing root and crown rot of gerbera in Izmir province in Turkey.
- Published
- 2019
41. The SwissFEL soft X-ray free-electron laser beamline: Athos
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C. Gough, Ulrich Wagner, Adriano Zandonella, Nicole Hiller, Uwe Flechsig, Marco Pedrozzi, Thomas J. Schmidt, Eduard Prat, Simona Bettoni, Luc Patthey, Marco Calvi, Martin Paraliev, René Künzi, Thomas Lippuner, Christopher Arrell, Maik Kaiser, Predrag Ranitovic, Arturo Alarcon, Cigdem Ozkan Loch, Florian Löhl, Christoph Bostedt, Eugenio Ferrari, C. Svetina, Carlo Vicario, F. Frei, F. Marcellini, B. Keil, M. Bopp, Hans Jakob Wörner, Rafael Abela, Philipp Dijkstal, Martin Huppert, Gian Luca Orlandi, Sladana Dordevic, A. Trisorio, Colette Rosenberg, Romain Ganter, Rasmus Ischebeck, Bruce D. Patterson, Hans Heinrich Braun, Zheqiao Geng, J. Alex, Paolo Craievich, Thomas Schietinger, Claude Pradervand, Roger Kalt, Stephan Hunziker, Vladimir Arsov, Tine Celcer, Rolf Follath, Nazareno Gaiffi, Haimo Jöhri, Christoph Kittel, G. Marinkovic, S. Sanfilippo, Didier Voulot, Pavle Juranić, Andreas Dax, Kirsten Schnorr, and Sven Reiche
- Subjects
bandwidth ,Nuclear and High Energy Physics ,transverse-gradient ,design ,01 natural sciences ,law.invention ,Optics ,law ,generation ,0103 physical sciences ,chicane ,pulses ,010306 general physics ,Instrumentation ,Physics ,FEL ,Radiation ,010308 nuclear & particles physics ,business.industry ,Free-electron laser ,Optical physics ,Superradiance ,Undulator ,Laser ,Research Papers ,Beamline ,superradiance ,APPLE undulator ,Physics::Accelerator Physics ,business ,Ultrashort pulse ,Beam (structure) - Abstract
The SwissFEL soft X-ray free-electron laser (FEL) beamline Athos will be ready for user operation in 2021. Its design includes a novel layout of alternating magnetic chicanes and short undulator segments. Together with the APPLE X architecture of undulators, the Athos branch can be operated in different modes producing FEL beams with unique characteristics ranging from attosecond pulse length to high-power modes. Further space has been reserved for upgrades including modulators and an external seeding laser for better timing control. All of these schemes rely on state-of-the-art technologies described in this overview. The optical transport line distributing the FEL beam to the experimental stations was designed with the whole range of beam parameters in mind. Currently two experimental stations, one for condensed matter and quantum materials research and a second one for atomic, molecular and optical physics, chemical sciences and ultrafast single-particle imaging, are being laid out such that they can profit from the unique soft X-ray pulses produced in the Athos branch in an optimal way., Journal of Synchrotron Radiation, 26 (4), ISSN:0909-0495, ISSN:1600-5775
- Published
- 2018
42. Lymph node fine-needle aspiration washout thyroglobulin in papillary thyroid cancer: Diagnostic value and the effect of thyroglobulin antibodies
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Cigdem Ozkan, Fusun Balos Toruner, Mehmet Muhittin Yalcin, Mujde Akturk, Nuri Cakir, Alev Eroglu Altinova, Turgay Cerit, Isilay Kalan, Murat Akin, Ceyla Konca Degertekin, and Ozlem Turhan Iyidir
- Subjects
Adult ,Male ,medicine.medical_specialty ,Pathology ,Adolescent ,endocrine system diseases ,medicine.medical_treatment ,Biopsy, Fine-Needle ,030209 endocrinology & metabolism ,Papillary thyroid cancer ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Predictive Value of Tests ,medicine ,Carcinoma ,Humans ,Thyroid Neoplasms ,Lymph node ,Aged ,Autoantibodies ,Retrospective Studies ,medicine.diagnostic_test ,business.industry ,Retrospective cohort study ,General Medicine ,Middle Aged ,medicine.disease ,Carcinoma, Papillary ,Fine-needle aspiration ,medicine.anatomical_structure ,Thyroid Cancer, Papillary ,030220 oncology & carcinogenesis ,Predictive value of tests ,Female ,Histopathology ,Thyroglobulin ,Lymph Nodes ,Radiology ,business - Abstract
Purpose: Thyroglobulin (Tg) assessment in the needle washout after fine-needle aspiration biopsy (FNAB) of a suspicious neck lymph node (LN) is known to improve the diagnostic accuracy in patients with papillary thyroid cancer (PTC). However, there is still controversy on the best diagnostic cut-off levels for FNAB-Tg and whether thyroglobulin antibody (TgAb) positivity affects FNAB-Tg. The objectives of this study were to determine (i) the diagnostic power of different cut-offs for FNAB-Tg and (ii) if serum TgAb(+) negatively affects the FNAB-Tg evaluation. Methods: This was a retrospective cohort study analyzing PTC patients with suspicious neck LNs, in a university hospital setting, from October 2009 to October 2013. In total, 103 patients with PTC (226 LNs) undergoing ultrasound-guided FNAB for LNs were included. Cytology and FNAB-Tg levels were compared in reference to LN histopathology and the effect of TgAb(+) on FNAB-Tg levels was evaluated. Results: The diagnostic accuracies of FNAB-Tg cut-off of 1 and 10 ng/mL were 94.1% and 88.2%, respectively. Raising the cut-off from 1 to 10 ng/mL led to decreased sensitivity rates (91.9% vs. 83.9%). The receiver operating characteristic curve analysis demonstrated that the best FNAB-Tg cut-off was 1.2 ng/mL. There were no LNs with an FNAB-Tg >= 10 ng/mL that turned out to be cytologically or histopathologically benign. FNAB-Tg levels of the histopathologically malignant LNs were similar between TgAb (+) and TgAb (-) patients (p = 0.546). Serum Tg predicted FNAB-Tg levels above 1 ng/mL (p = 0.002) and FNAB-Tg predicted malignant histopathology (p = 0.004), both independently of the TgAb status of the patient. Conclusions: FNAB-Tg >= 1 ng/mL has a superior diagnostic power, irrespective of TgAb (+), in PTC patients with suspected LN involvement.
- Published
- 2016
43. Generation and Measurement of Sub-Micrometer Relativistic Electron Beams
- Author
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Gian Luca Orlandi, Martin Bednarzik, Eugenio Ferrari, Christian David, Eduard Prat, Vitaliy A. Guzenko, Cigdem Ozkan-Loch, Simona Borrelli, and Rasmus Ischebeck
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Accelerator Physics (physics.acc-ph) ,Materials science ,Instrumentation ,General Physics and Astronomy ,FOS: Physical sciences ,lcsh:Astrophysics ,Electron ,01 natural sciences ,Photocathode ,law.invention ,Optics ,law ,0103 physical sciences ,lcsh:QB460-466 ,Thermal emittance ,010306 general physics ,Lithography ,010308 nuclear & particles physics ,business.industry ,acceleration ,Laser ,lcsh:QC1-999 ,Cathode ray ,Physics::Accelerator Physics ,Physics - Accelerator Physics ,business ,Beam (structure) ,lcsh:Physics - Abstract
The generation of low-emittance electron beams has received significant interest in recent years. Driven by the requirements of X-ray-free electron lasers, the emittance of photocathode injectors has been reduced significantly, with corresponding increase in beam brightness. This has put increasingly stringent requirements on the instrumentation to measure the beam size. These requirements are even more stringent for novel accelerator developments, such as laser-driven accelerators based on dielectric structures or on a plasma. We present here the generation and measurement of a sub-micrometer electron beam, at a particle energy of 330 MeV, and a bunch charge below 1 pC. An electron-beam optics with a vertical β-function of a few millimeters has been setup. The beam is characterized through a wire scanner that employs a 1 μm wide metallic structure fabricated using the electron-beam lithography. The smallest (rms) transverse beam size presented here is
- Published
- 2018
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44. Classification of Patients with Bipolar Disorder and Their Healthy Siblings from Healthy Controls Using MRI
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Cigdem, Ozkan, primary, Horuz, Erencan, additional, Soyak, Refik, additional, Aydeniz, Burhan, additional, Sulucay, Aysu, additional, Oguz, Kaya, additional, Demirel, Hasan, additional, Kitis, Omer, additional, Eker, Cagdas, additional, Gonul, Ali Saffet, additional, and Unay, Devrim, additional
- Published
- 2019
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45. Effects of Covariates on Classification of Bipolar Disorder Using Structural MRI
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Cigdem, Ozkan, primary, Horuz, Erencan, additional, Soyak, Refik, additional, Aydeniz, Burhan, additional, Sulucay, Aysu, additional, Oguz, Kaya, additional, Demirel, Hasan, additional, Kitis, Omer, additional, Eker, Cagdas, additional, Gonul, Ali Saffet, additional, and Unay, Devrim, additional
- Published
- 2019
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46. Performance analysis of different classification algorithms using different feature selection methods on Parkinson's disease detection
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Cigdem, Ozkan, primary and Demirel, Hasan, additional
- Published
- 2018
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47. Proprotein convertase subtilisin/kexin type 9 (PCSK9), soluble lectin-like oxidized LDL receptor 1 (sLOX-1) and ankle brachial index in patients with differentiated thyroid cancer
- Author
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Mujde Akturk, Ethem Turgay Cerit, Alev Eroglu Altinova, Ozlem Gulbahar, Nuri Cakir, Cigdem Ozkan, Fusun Balos Toruner, and Mehmet Muhittin Yalcin
- Subjects
Adult ,Male ,endocrine system ,medicine.medical_specialty ,endocrine system diseases ,Apolipoprotein B ,Endocrinology, Diabetes and Metabolism ,Levothyroxine ,Iodine Radioisotopes ,chemistry.chemical_compound ,Endocrinology ,Hypothyroidism ,Internal medicine ,medicine ,Humans ,Ankle Brachial Index ,Thyroid Neoplasms ,Thyroid cancer ,Triglycerides ,Apolipoproteins B ,biology ,Cholesterol ,business.industry ,PCSK9 ,Serine Endopeptidases ,Thyroid ,Cholesterol, LDL ,Middle Aged ,Scavenger Receptors, Class E ,medicine.disease ,Lipids ,Thyroxine ,medicine.anatomical_structure ,chemistry ,biology.protein ,Kexin ,Female ,Proprotein Convertases ,Proprotein Convertase 9 ,business ,medicine.drug ,Hormone - Abstract
The cardiovascular effects of short-term overt hypothyroidism are not well known. We investigated proprotein convertase subtilisin/kexin type 9 (PCSK9), soluble lectin-like oxidized LDL receptor 1 (sLOX-1) and the ankle brachial index (ABI) in thyroid cancer patients with short-term overt hypothyroidism due to thyroid hormone withdrawal (THW). Twenty-one patients requiring radioactive iodine (RAT) ablation or scanning and 36 healthy control subjects were enrolled. Patients were evaluated in the subclinical thyrotoxic phase when they were on suppressive levothyroxine therapy and in the overt hypothyroid phase due to THW for four weeks. PCSK9, sLOX-1, lipids and ABI were measured in the patient and control groups. Total cholesterol, LDL cholesterol, triglycerides and Apo B levels were increased in short overt hypothyroidism compared with the control group (p
- Published
- 2015
48. Destructive Thyroiditis Followed by Hypothyroidism Associated with Infliximab Therapy
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Cigdem Ozkan, Alev Eroglu Altinova, Mujde Akturk, Nuri Cakir, Ethem Turgay Cerit, Fusun Balos Toruner, and Mehmet Muhittin Yalcin
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Male ,musculoskeletal diseases ,Infliximab therapy ,Thyroiditis ,medicine.medical_specialty ,business.industry ,Endocrinology, Diabetes and Metabolism ,Thyrotropin ,General Medicine ,Middle Aged ,medicine.disease ,Infliximab ,Thyroxine ,Endocrinology ,Hypothyroidism ,X ray computed ,Rare case ,Immunology ,medicine ,Humans ,Radiology ,Tomography, X-Ray Computed ,business - Abstract
To present the rare case of a patient who developed destructive thyroiditis accompanied by transient thyrotoxicosis resulting from infliximab therapy for the treatment of psoriasis.The clinical presentation and management of a case with infliximab-associated thyroiditis is described with a brief review of the literature.A 57-year-old male who suffered from psoriasis was treated with infliximab therapy for 4 years. Thyroid function tests were normal before infliximab therapy. When the patient presented in our clinic, he had thyrotoxicosis and was using propylthiouracil. A 99m Technetiumpertechnetate thyroid scintigraphy scan showed no visualization of either thyroid lobe or decreased thyroid iodine uptake. Thyroid-stimulating hormone (TSH) receptor antibody, thyroid peroxidase antibody (anti-TPO Ab) and thyroglobulin antibody (anti-Tg Ab) were negative. Thyroid ultrasonography revealed a heterogeneous thyroid gland without nodules. After stopping propylthiouracil therapy, we advised monitoring of his thyroid function tests in the following weeks, and infliximab therapy for psoriasis was continued. Four weeks later, his thyroid function tests showed an elevated TSH level with normal levels of free triiodothyronine and thyroxine (FT3 and FT4, respectively), and levothyroxine treatment was administered to the patient. Thyroid function tests normalized after levothyroxine treatment. One year later, infliximab therapy was stopped because of clinical remission. Simultaneously, levothyroxine treatment was also stopped. His thyroid function tests were normal 6 weeks after the cessation of levothyroxine treatment.To our knowledge, the present report is the third infliximab-associated thyroid disorder case. Periodic follow-up of thyroid function tests is necessary during infliximab therapy.
- Published
- 2014
49. Evaluation of body composition changes, epicardial adipose tissue, and serum omentin-1 levels in overt hypothyroidism
- Author
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Cigdem Ozkan, Mustafa Altay, Ethem Turgay Cerit, Yusuf Tavil, Canan Demirtas, Mujde Akturk, Nuri Cakir, Alev Eroglu Altinova, and Çağrı Yayla
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Adult ,Male ,endocrine system ,medicine.medical_specialty ,endocrine system diseases ,Homocysteine ,Hormone Replacement Therapy ,Endocrinology, Diabetes and Metabolism ,Adipose tissue ,GPI-Linked Proteins ,chemistry.chemical_compound ,Endocrinology ,Hypothyroidism ,Lectins ,Diabetes mellitus ,Internal medicine ,Humans ,Medicine ,Euthyroid ,Prospective Studies ,Ultrasonography ,business.industry ,Thyroid ,Middle Aged ,medicine.disease ,medicine.anatomical_structure ,Adipose Tissue ,chemistry ,Body Composition ,Lean body mass ,Cytokines ,Female ,medicine.symptom ,business ,Pericardium ,Weight gain ,Hormone - Abstract
Our aim was to investigate body composition changes, epicardial adipose tissue thickness (EATT), serum omentin-1 levels, and the relationship among them along with some atherosclerosis markers in overt hypothyroidism. Twenty-eight newly diagnosed overt hypothyroid patients were evaluated before and after 6 months of thyroid hormone replacement therapy (THRT) and compared to the healthy subjects in this prospective longitudinal study. Body compositions were measured with dual-energy X-ray absorptiometry, and EATT was measured by echocardiography. Carotid intima-media thickness (c-IMT), flow-mediated dilatation (FMD), thyroid hormone levels, lipid parameters, high sensitive c-reactive protein, homocysteine, and omentin-1 levels were measured in all subjects. Body weight and lean body mass were higher in patients with hypothyroidism compared to euthyroid state after THRT (p = 0.012, 0.034, respectively). EATT was higher in patients with hypothyroidism than the control group (p < 0.001) and decreased with THRT (p = 0.012) but still remained higher than the control group (p < 0.001). Free T4 levels were found to be an independent factor to predict EATT (p < 0.001). In hypothyroid state, omentin-1 levels were lower than controls (p = 0.037) but increased in 6 months with THRT (p = 0.001). The c-IMT was higher, and FMD was lower in hypothyroidism compared to euthyroid state and control group (p < 0.05). Increasing lean body mass, but not adipose tissue mass, was found to be responsible for weight gain in hypothyroidism. The increased amount of EATT and decreased omentin-1 levels can contribute to the development of atherosclerosis in addition to other factors in hypothyroidism.
- Published
- 2014
50. SwissFEL: The Swiss X-ray Free Electron Laser
- Author
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Bill Pedrini, Paul Beaud, Hans-Heinrich Braun, Edwin Divall, G. Marinkovic, Matthias Ringele, Roberto Dinapoli, Vladimir Arsov, H. Brands, Ralf Menzel, Christof Zellweger, Yunpei Deng, Christoph P. Hauri, Christoph Kittel, Marta Csatari Divall, Thomas Schietinger, Thierry Zamofing, Pavle Juranić, Rasmus Ischebeck, Roger Kalt, Markus Janousch, I. Gorgisyan, M. Stadler, Florian Gärtner, C. Lopez-Cuenca, Volker Schlott, Terence Garvey, Claude Pradervand, Gian Luca Orlandi, Meitian Wang, Leonid Rivkin, M. Jurcevic, Marie Ruat, Mark Dällenbach, Paolo Craievich, Nicole Hiller, Christian Erny, Martin Paraliev, Uwe Flechsig, Patrick Pollet, Wolfgang Tron, Bruce D. Patterson, B. Keil, Elke Zimoch, T. Schilcher, L. Stingelin, Rafael Abela, Sladana Dordevic, Ezequiel Panepucci, J. Alex, A. Hauff, Jean-Yves Raguin, Sven Reiche, Arturo Alarcon, Marco Pedrozzi, S. Redford, Peter Radi, A. Trisorio, Henrik T. Lemke, Alexander Dietrich, Didier Voulot, Michael D’Amico, Karol Nass, Ingo Brunnenkant, Hansrudolf Fitze, Albert Romann, Aldo Mozzanica, Rolf Follath, C. Ruder, Florian Löhl, Cigdem Ozkan Loch, Tadej Humar, Christopher J. Milne, Babak Kalantari, M. Aiba, Jakub Szlachetko, F. Marcellini, Gerhard Ingold, S. Vetter, Xintian Shi, Alexander Anghel, Isabelle Martiel, Carlo Vicario, Andreas Dax, Eduard Prat, Thomas J. Schmidt, Bernd Schmitt, A. Citterio, Luc Patthey, Marco Calvi, F. Frei, M. Bopp, Carl Beard, Stephan Hunziker, Zheqiao Geng, Manuel Brönnimann, Lionel Schebacher, R. Zennaro, D. Thattil, Maik Kaiser, Fabian Märki, Thomas Lippuner, W. Koprek, Werner Sturzenegger, Romain Ganter, D. Treyer, C. Gough, Daniel Llorente Sancho, Simona Bettoni, J. Rittmann, Simon Ebner, Jens Rehanek, Leonardo Sala, Gregor Knopp, and Julien Réhault
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X-ray photon diagnostics ,X-ray detector ,serial femtosecond crystallography ,Photon ,X-ray free electron laser ,linac ,X-rays ,undulator ,SwissFEL ,X-ray optics ,ultrafast X-ray science ,JUNGFRAU ,lcsh:Technology ,01 natural sciences ,Linear particle accelerator ,lcsh:Chemistry ,Optics ,0103 physical sciences ,General Materials Science ,010306 general physics ,lcsh:QH301-705.5 ,Instrumentation ,Fluid Flow and Transfer Processes ,Physics ,lcsh:T ,010308 nuclear & particles physics ,business.industry ,Process Chemistry and Technology ,General Engineering ,Free-electron laser ,X-ray ,Undulator ,lcsh:QC1-999 ,Computer Science Applications ,lcsh:Biology (General) ,lcsh:QD1-999 ,lcsh:TA1-2040 ,lcsh:Engineering (General). Civil engineering (General) ,business ,lcsh:Physics - Abstract
The SwissFEL X-ray Free Electron Laser (XFEL) facility started construction at the Paul Scherrer Institute (Villigen, Switzerland) in 2013 and will be ready to accept its first users in 2018 on the Aramis hard X-ray branch. In the following sections we will summarize the various aspects of the project, including the design of the soft and hard X-ray branches of the accelerator, the results of SwissFEL performance simulations, details of the photon beamlines and experimental stations, and our first commissioning results.
- Published
- 2017
- Full Text
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