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he reactive chemistry of isoprene, which is the dominant hydrocarbon in biogenic emissions, has a controlling influence on the composition and cleansing capacity of the global atmosphere. Despite decades of research, isoprene continues to offer surprises in its atmospheric chemistry, particularly in environments with low-to-moderate levels of nitrogen oxides (NOₓ). Here, we probe the isoprene photochemical oxidation in this “intermediate-NOₓ” regime by examining the yield distributions of two major oxidation products, i.e., methacrolein and methyl vinyl ketone, using chamber experiments and aircraft measurements. Such a dataset provides strong constraints on the kinetics of the isoprene peroxy radical interconversion—a newly discovered mechanism that essentially governs the isoprene oxidation carbon flow. Insights from measurement-model comparisons further reveal an efficient operation of this mechanism across all the vegetated continents over the globe, constantly modulating the radical cycling and contributing to the formation of ozone and organic aerosols in the atmosphere.

Polar halogen chemistry has long been known to be active, especially in spring, and has an important influence on the lifetime of some volatile organics, ozone, and mercury. Reactive chlorine and bromine species, produced from snow and aerosols, can have significant impacts on the oxidative capacity of the polar boundary layer. However, halogen production mechanisms from snow remain highly uncertain, making it challenging to include descriptions of halogen snow emissions in models and to understand the impact on atmospheric chemistry. In this work, we investigate the role of Arctic chlorine and bromine emissions from snow on boundary layer oxidation processes using a one-dimensional atmospheric chemistry and transport model (PACT-1D). We explore the impact of halogen snow emissions and boundary layer dynamics on atmospheric chemistry by modelling primary emissions of Cl2 and Br2 from snow, and heterogeneous recycling reactions on snow and aerosols. We present a two-day case study from the 2009 Ocean-Atmosphere-Sea Ice-Snowpack (OASIS) campaign at Utqiagvik, Alaska. The model reproduces both the diurnal cycle and high quantity of Cl2 measured, along with the observed concentrations of Br2, BrO, and HOBr. Due to a combination of chemical emissions, recycling, vertical mixing, and atmospheric chemistry, reactive chlorine is confined to the lowest 15 m of the atmosphere, whilst bromine impacts chemistry up to the boundary layer height. Following the inclusion of halogen emissions and recycling, HOx concentrations (HOx = OH+HO2) increase by as much as a factor of 30 at the surface at mid-day. Consequently, volatile organic compound (VOC) lifetimes are significantly reduced within a shallow layer near the surface, due to chlorine atoms from Cl2 snow emissions and increased HOx attributable to halogen chemistry.

It is well known that the high population density of urban regions leads to significant degradation of the quality of the air because of the emissions of pollutants that are by-products of energy production, transportation, and industry. The composition and chemistry of urban air has been studied for many decades and these studies have led to detailed understanding of the factors controlling, for example, the formation of ozone, peroxyacetyl nitrate and other secondary species. In the last 20 to 30 years, significant progress has been made in reducing emissions of volatile organic compounds (VOCs) and oxides of nitrogen (NOx) in urban atmospheres. Substantial reductions in the abundance of secondary compounds, though, have been more elusive.Research has continued to reveal more and more details of the complex processes involved in the atmospheric degradation of wide varieties of volatile organic compounds (VOCs) of anthropogenic and biospheric (BVOCs) origins. BVOCs include isoprene, monoterpenes and sesquiterpenes, and oxygenated VOCs (OVOCs, such as small alcohols). Emissions of BVOCs depend on several factors such as plant or tree species, temperature, and photosynthetically active radiation. They consist almost exclusively of unsaturated compounds with chemistry somewhat different from those of typical urban organic compound emissions. Oxidation of VOCs can lead to molecules of low volatility that are prone to uptake into the aerosol phase.Recent studies conducted in megacities such as Paris, Mexico City, Los Angeles and those in China have led to significant advances in our understanding of the chemical evolution of urban plumes. However, important scientific questions remain on how mixing of anthropogenic and biogenic air masses modifies the composition of urban plumes and hence their impacts. Indeed, the proximity of cites to areas of strong biogenic emissions is not unusual. Many major cities at mid-latitudes are surrounded by forested areas.ACROSS (Atmospheric ChemistRy Of the Suburban foreSt) is an integrative, innovative, multi-scale project awarded under the “Make Our Planet Great Again” (MOPGA) framework that seeks to definitively improve understanding of the impacts of mixing urban and biogenic air masses on the oxidation of atmospheric VOCs. The ACROSS working hypothesis is that this leads to changes in the production of oxygenated VOCs whose properties (e.g. vapor pressures) alter their importance in incorporation into SOA and their roles in production of ozone and other secondary species. Changes are also expected in the efficiency of radical recycling affecting the atmospheric oxidative capacity. Particularly important is NOx transport to suburban biogenic environments and the resulting modification of key chemical processes.A key highlight of ACROSS is an intensive, multi-platform measurement campaign in the summer of 2022. It will use instruments staged on an airborne platform, a tower in the Rambouillet Forest near Paris, and other ground sites. The data collected from this campaign will be analyzed and studied to extract information about tropospheric oxidation chemistry generally, but also changes observed in the situation of mixed urban and biogenic air masses.This presentation will summarize plans for the ACROSS campaign.

The NO3 radical is the main atmospheric oxidant at night. The night period is favorable to the formation and accumulation of NO3 radicals in the atmosphere. On the one hand, it is formed by the reaction of nitrogen dioxide with ozone while, on the other hand, NO3 being highly photosensitive, it cannot accumulate significantly during the day (S. S. Brown and J. Stutz, Chem. Soc. Rev. 2012). In addition, the reaction between NO and NO3 is very fast and so, urban environment is considered so far, being not favorable to the occurrence of NO3 radicals. However, atmospheric nitrogen chemistry near the earth surface is strongly linked to the dynamics of the boundary layer and in summer NO is rapidly depleted by ozone. A large variability of the mixing ratios for NO3 as a function of height above the ground is thus expected with non-negligible concentrations in altitude (Brown et al., Atmos. Chem. Phys., 2007). The contribution of NO3 radical to the atmospheric evolution of VOCs in urban and sub-urban areas may therefore also be influenced by this vertical distribution.To demonstrate the potential importance of NO3 radical even in urban environment, a field campaign was carried out at night during July 2018 inside Paris. A newly developed field instrument dedicated to the measurement of NO3 radical was deployed on a high payload touristic tethered balloon located in Paris 15th district that was used as vertical vector. The NO3 instrument is a compact, robust and easily deployable on field instrument based on the IBB-CEAS (Incoherent Broad band Cavity Enhanced Absorption Spectroscopy) technique. NO3 measurements were completed by ground and airborne measurements of NO (chemiluminescence analyzer), NO2 (CAPS cavity) and O3 (absorption analyzer) concentrations as well as particle number concentrations (OPC GrimmTM) and 355 nm lidar (Leosphere ALS300) measurement for mixing layer probing.Vertical profiles from 0 to up to 300 m were obtained at night characterized by high concentrations of ozone and moderate humidity. In this presentation, vertical profiles of the species measured and implications for VOC oxidation in urban environment will be discussed.

Chemical models must correctly calculate the ozone formation rate, P(O3), to accurately predict ozone levels and to test mitigation strategies. However, air quality models can have large uncertainties in P(O3) calculations, which can create uncertainties in ozone forecasts, especially during the summertime when P(O3) is high. One way to test mechanisms is to compare modeled P(O3) to direct measurements. During summer 2014, the Measurement of Ozone Production Sensor (MOPS) directly measured net P(O3) in Golden, CO, approximately 25 km west of Denver along the Colorado Front Range. Net P(O3) was compared to rates calculated by a photochemical box model that was constrained by measurements of other chemical species and that used a lumped chemical mechanism and a more explicit one. Median observed P(O3) was up to a factor of 2 higher than that modeled during early morning hours when nitric oxide (NO) levels were high and was similar to modeled P(O3) for the rest of the day. While all interferences and offsets in this new method are not fully understood, simulations of these possible uncertainties cannot explain the observed P(O3) behavior. Modeled and measured P(O3) and peroxy radical (HO2 and RO2) discrepancies observed here are similar to those presented in prior studies. While a missing atmospheric organic peroxy radical source from volatile organic compounds co-emitted with NO could be one plausible solution to the P(O3) discrepancy, such a source has not been identified and does not fully explain the peroxy radical model–data mismatch. If the MOPS accurately depicts atmospheric P(O3), then these results would imply that P(O3) in Golden, CO, would be NOx-sensitive for more of the day than what is calculated by models, extending the NOx-sensitive P(O3) regime from the afternoon further into the morning. These results could affect ozone reduction strategies for the region surrounding Golden and possibly other areas that do not comply with national ozone regulations. Thus, it is important to continue the development of this direct ozone measurement technique to understand P(O3), especially under high-NOx regimes.

Recently, methods involving examination of environmental DNA (eDNA) have shown promise for characterizing fish species presence and distribution in waterbodies. We evaluated the use of eDNA for standard fish monitoring surveys in a large reservoir. Specifically, we compared the presence, relative abundance, biomass, and relative percent composition of Largemouth Bass Micropterus salmoides and Gizzard Shad Dorosoma cepedianum measured through eDNA methods and established American Fisheries Society standard sampling methods for Theodore Roosevelt Lake, Arizona. Catches at electrofishing and gillnetting sites were compared with eDNA water samples at sites, within spatial strata, and over the entire reservoir. Gizzard Shad were detected at a higher percentage of sites with eDNA methods than with boat electrofishing in both spring and fall. In contrast, spring and fall gillnetting detected Gizzard Shad at more sites than eDNA. Boat electrofishing and gillnetting detected Largemouth Bass at more sites t...

Ozone depletion events (ODEs) in the Arctic are primarily controlled by a bromine radical-catalyzed destruction mechanism that depends on the efficient production and recycling of Br atoms. Numerous laboratory and modeling studies have suggested the importance of heterogeneous recycling of Br through HOBr reaction with bromide on saline surfaces. On the other hand, the gas-phase regeneration of bromine atoms through BrO–BrO radical reactions has been assumed to be an efficient, if not dominant, pathway for Br reformation and thus ozone destruction. Indeed, it has been estimated that the rate of ozone depletion is approximately equal to twice the rate of the BrO self-reaction. Here, we use a zero-dimensional, photochemical model, largely constrained to observations of stable atmospheric species from the 2009 Ocean–Atmosphere–Sea Ice–Snowpack (OASIS) campaign in Barrow, Alaska, to investigate gas-phase bromine radical propagation and recycling mechanisms of bromine atoms for a 7-day period during late March. This work is a continuation of that presented in Thompson et al. (2015) and utilizes the same model construct. Here, we use the gas-phase radical chain length as a metric for objectively quantifying the efficiency of gas-phase recycling of bromine atoms. The gas-phase bromine chain length is determined to be quite small, at

Background The BioFire Bone and Joint Infection (BJI) Panel is a sample-to-answer test for the qualitative detection of nearly 40 different bacteria, yeast, and antimicrobial resistance (AMR) genes in synovial fluid (SF). The panel aims to improve on current culture-based diagnostics, particularly for detection of anaerobes (e.g. Finegoldia magna, Kingella kingae, Cutibacterium, Anaerococcus and Peptoniphilus species, and others) in about an hour. Analytical performance of the panel (Limit of Detection (LoD), analytical reactivity and specificity, interference, reproducibility), and specimen storage conditions are described. Methods LoD for each analyte was estimated from serial dilutions and confirmed at the lowest titer with ≥95% detection. A collection of >350 isolates representing genetic and geographic diversity of analytes was tested near LoD to assess analytical reactivity, and more than 420 near-neighbor, commensal, pathogenic, or environmental off-panel species were evaluated for assay specificity. Reproducibility was evaluated in a multi-laboratory multi-variable study, and the impact of storage and potentially interfering substances on the accuracy of test results was also assessed. Testing was performed with Investigational Use Only kits. Results The confirmed LoD for bacteria and yeast ranged from 100 - 10,000 CFU/mL. Sequence analysis and testing demonstrated clinically appropriate specificity and reactivity with a variety of isolates and different AMR gene types. Accurate and reproducible organism and AMR gene detection was observed with repeated testing of samples over several days (99.9% agreement with the expected results), and detection was not affected by potentially interfering substances nor by refrigerated sample storage. Conclusion The BioFire BJI Panel is a robust, accurate, and easy-to-use multiplex PCR test capable of detecting many aerobic and anaerobic bacteria, yeast, and AMR genes in synovial fluid specimens. Rapid and reliable molecular detection of possible BJI pathogens may advance the diagnosis and effective management of bone and joint infections. Note This panel has not been evaluated by the FDA or other regulatory agencies for diagnostic use. Disclosures Nicholas Francis, n/a, BioFire Diagnostics (Employee) Laurence Barbier, n/a, Biomerieux (Employee) Caroline Dubost, n/a, Biomerieux (Employee) Elodie Billet, n/a, Biomerieux (Employee) Joel Manwaring, n/a, BioFire Diagnostics (Employee) Josh Southwick, n/a, BioFire Diagnostics (Employee) Tyson Dawson, n/a, BioFire Diagnostics (Employee) Jess Gann, n/a, BioFire Diagnostics (Employee) Kevin Ekins, n/a, BioFire Diagnostics (Employee) Jennifer Arce, MS, BioFire Diagnostics/BioMerieux (Employee) Briana Flaherty, n/a, BioFire Diagnostics (Employee) Harmonie Durand, n/a, Biomerieux (Employee) Chris Cantrell, n/a, Biomerieux (Employee) Elizabeth Amiott, n/a, BioFire Diagnostics (Employee)

Atmospheric emissions from the Chicago/Gary urban/industrial area significantly enhance ambient mercury (Hg) concentrations and lead to increased levels of atmospheric Hg deposition within the Lake Michigan Basin. We use airborne observations collected over Lake Michigan during the 2013 Nitrogen, Oxidants, Mercury, and Aerosol Distributions, Sources, and Sinks (NOMADSS) campaign to quantify the outflow of total Hg (THg) emissions from the Chicago/Gary urban/industrial area. We use concurrent airborne measurements of THg, carbon monoxide (CO), nitrogen oxides (NOx = NO + NO2), and sulfur dioxide (SO2) to calculate measured enhancement ratios and to characterize Chicago/Gary emissions with respect to the 2011 U.S. EPA National Emissions Inventory. We determine the observed THg/CO enhancement ratio in outflow from Chicago/Gary to be 0.21 ± 0.09 × 10−6 mol mol−1 (ppqv/ppbv), which is comparable to observations reported for other major U.S. urban/industrial areas. We also employ the FLEXPART Lagrangian transport and dispersion model to simulate air mass transport during plume encounters and to compare our observations to inventoried emission ratios. We find that our observed THg/CO enhancement ratios are 63–67% greater than the transport-corrected emission ratios for the Chicago/Gary area. Our results suggest that there are many small emission sources that are not fully accounted for within the inventory, and/or that the re-emission of legacy Hg is a significant source of THg to the atmosphere in this region.

We have developed semi-independent methods for determining CH2O scavenging efficiencies (SEs) during strong midlatitude convection over the western, south-central Great Plains, and southeastern regions of the United States during the 2012 Deep Convective Clouds and Chemistry (DC3) Study. The Weather Research and Forecasting model coupled with chemistry (WRF-Chem) was employed to simulate one DC3 case to provide an independent approach of estimating SEs and the opportunity to study CH2O retention in ice when liquid drops freeze. Measurements of CH2O in storm inflow and outflow were acquired on board the NASA DC-8 and the NSF/National Center for Atmospheric Research Gulfstream V (GV) aircraft employing cross-calibrated infrared absorption spectrometers. This study also relied heavily on the nonreactive tracers i-/n-butane and i-/n-pentane measured on both aircraft in determining lateral entrainment rates during convection as well as their ratios to ensure that inflow and outflow air masses did not have different origins. Of the five storm cases studied, the various tracer measurements showed that the inflow and outflow from four storms were coherently related. The combined average of the various approaches from these storms yield remarkably consistent CH2O scavenging efficiency percentages of: 54% ± 3% for 29 May; 54% ± 6% for 6 June; 58% ± 13% for 11 June; and 41 ± 4% for 22 June. The WRF-Chem SE result of 53% for 29 May was achieved only when assuming complete CH2O degassing from ice. Further analysis indicated that proper selection of corresponding inflow and outflow time segments is more important than the particular mixing model employed.

One of the objectives of the Deep Convective Clouds and Chemistry (DC3) field experiment was to determine the scavenging of soluble trace gases by thunderstorms. We present an analysis of scavenging of hydrogen peroxide (H_2O_2) and methyl hydrogen peroxide (CH_3OOH) from six DC3 cases that occurred in Oklahoma and northeast Colorado. Estimates of H_2O_2 scavenging efficiencies are comparable to previous studies ranging from 79 to 97% with relative uncertainties of 5–25%. CH_3OOH scavenging efficiencies ranged from 12 to 84% with relative uncertainties of 18–558%. The wide range of CH_3OOH scavenging efficiencies is surprising, as previous studies suggested that CH_3OOH scavenging efficiencies would be

The accuracy and robustness of the Vitek MS v3.0 matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry (MS) system was evaluated by identifying mycobacteria from automated liquid-medium systems using patient samples. This is the first report to demonstrate that proteins within the liquid medium, its supplements, and decontamination reagents for nonsterile patient samples do not generate misidentification or false-positive results by use of the Vitek MS v3.0 system. Prior to testing with patient samples, a seeded-culture study was conducted to challenge the accuracy of the Vitek MS system at identifying mycobacteria from liquid medium by mimicking a clinical workflow. Seventy-seven Mycobacterium strains representing 21 species, seeded in simulated sputum, were decontaminated, inoculated into BacT/Alert MP liquid culture medium, incubated until positivity, and identified using the Vitek MS system. A total of 383 liquid cultures were tested, of which 379 (99%) were identified correctly to the species/complex/group level, 4 (1%) gave a "no-identification" result, and no misidentifications were observed. Following the simulated-sputum study, a total of 73 smear-positive liquid-medium cultures detected using BD BBL MGIT and VersaTREK Myco liquid media were identified by the Vitek MS system. Sixty-four cultures (87.7%) were correctly identified to the species/complex/group level; 7 (9.6%) resulted in no identification; and 2 (2.7%) were misidentified at the species level. These results indicate that the Vitek MS v3.0 system is an accurate tool for routine diagnostics of Mycobacterium species isolated from liquid cultures.

Arctic boundary layer nitrogen oxides (NOx = NO2 + NO) are naturally produced in and released from the sunlit snowpack and range between 10 to 100 pptv in the remote background surface layer air. These nitrogen oxides have significant effects on the partitioning and cycling of reactive radicals such as halogens and HOx (OH + HO2). However, little is known about the impacts of local anthropogenic NOx emission sources on gas-phase halogen chemistry in the Arctic, and this is important because these emissions can induce large variability in ambient NOx and thus local chemistry. In this study, a zero-dimensional photochemical kinetics model was used to investigate the influence of NOx on the unique springtime halogen and HOx chemistry in the Arctic. Trace gas measurements obtained during the 2009 OASIS (Ocean – Atmosphere – Sea Ice – Snowpack) field campaign at Barrow, AK were used to constrain many model inputs. We find that elevated NOx significantly impedes gas-phase halogen radical-based depletion of ozone, through the production of a variety of reservoir species, including HNO3, HO2NO2, peroxyacetyl nitrate (PAN), BrNO2, ClNO2 and reductions in BrO and HOBr. The effective removal of BrO by anthropogenic NOx was directly observed from measurements conducted near Prudhoe Bay, AK during the 2012 Bromine, Ozone, and Mercury Experiment (BROMEX). Thus, while changes in snow-covered sea ice attributable to climate change may alter the availability of molecular halogens for ozone and Hg depletion, predicting the impact of climate change on polar atmospheric chemistry is complex and must take into account the simultaneous impact of changes in the distribution and intensity of anthropogenic combustion sources. This is especially true for the Arctic, where NOx emissions are expected to increase because of increasing oil and gas extraction and shipping activities.

We use measurements made onboard the National Science Foundation's C-130 research aircraft during the 2013 Nitrogen, Oxidants, Mercury, and Aerosol Distributions, Sources, and Sinks (NOMADSS) experiment to examine total Hg (THg) emission ratios (EmRs) for six coal-fired power plants (CFPPs) in the southeastern U.S. We compare observed enhancement ratios (ERs) with EmRs calculated using Hg emissions data from two inventories: the National Emissions Inventory (NEI) and the Toxics Release Inventory (TRI). For four CFPPs, our measured ERs are strongly correlated with EmRs based on the 2011 NEI (r(2) = 0.97), although the inventory data exhibit a -39% low bias. Our measurements agree best (to within ±32%) with the NEI Hg data when the latter were derived from on-site emissions measurements. Conversely, the NEI underestimates by approximately 1 order of magnitude the ERs we measured for one previously untested CFPP. Measured ERs are uncorrelated with values based on the 2013 TRI, which also tends to be biased low. Our results suggest that the Hg inventories can be improved by targeting CFPPs for which the NEI- and TRI-based EmRs have significant disagreements. We recommend that future versions of the Hg inventories should provide greater traceability and uncertainty estimates.

The springtime depletion of tropospheric ozone in the Arctic is known to be caused by active halogen photochemistry resulting from halogen atom precursors emitted from snow, ice, or aerosol surfaces. The role of bromine in driving ozone depletion events (ODEs) has been generally accepted, but much less is known about the role of chlorine radicals in ozone depletion chemistry. While the potential impact of iodine in the High Arctic is more uncertain, there have been indications of active iodine chemistry through observed enhancements in filterable iodide, probable detection of tropospheric IO, and recently, observation of snowpack photochemical production of I2. Despite decades of research, significant uncertainty remains regarding the chemical mechanisms associated with the bromine-catalyzed depletion of ozone, as well as the complex interactions that occur in the polar boundary layer due to halogen chemistry. To investigate this, we developed a zero-dimensional photochemical model, constrained with measurements from the 2009 OASIS field campaign in Barrow, Alaska. We simulated a 7-day period during late March that included a full ozone depletion event lasting 3 days and subsequent ozone recovery to study the interactions of halogen radicals under these different conditions. In addition, the effects of iodine added to our Base Model were investigated. While bromine atoms were primarily responsible for ODEs, chlorine and iodine were found to enhance the depletion rates and iodine was found to be more efficient per atom at depleting ozone than Br. The interaction between chlorine and bromine is complex, as the presence of chlorine can increase the recycling and production of Br atoms, while also increasing reactive bromine sinks under certain conditions. Chlorine chemistry was also found to have significant impacts on both HO2 and RO2, with organic compounds serving as the primary reaction partner for Cl atoms. The results of this work highlight the need for future studies on the production mechanisms of Br2 and Cl2, as well as on the potential impact of iodine in the High Arctic.

The production of sulfate aerosols through sulfur chemistry in marine environments is critical to the tropical climate system. However, not all sulfur compounds have been studied in detail. One such compound is methanesulfonic acid (MSA). In this study, we use a one-dimensional chemical transport model to analyze the observed vertical profiles of gas phase MSA during the Pacific Atmospheric Sulfur Experiment. The observed sharp decrease in MSA from the surface to 600 m implies a surface source of 4.0 × 107 molecules/cm2/s. Evidence suggests that this source is photolytically enhanced in daytime. We also find that the observed large increase of MSA from the boundary layer into the lower free troposphere (1000–2000 m) results mainly from the degassing of MSA from dehydrated aerosols. We estimate a source of 1.2 × 107 molecules/cm2/s to the free troposphere through this pathway. This source of soluble MSA could potentially provide an important precursor for new particle formation in the free troposphere over the tropics, affecting the climate system through aerosol-cloud interactions.

Chlorine radicals function as a strong atmospheric oxidant, particularly in polar regions, where levels of hydroxyl radicals are low. Measurements in the Arctic reveal high levels of molecular chlorine during the day, consistent with a photochemical source.

In contrast with the textbook view of remote chemistry where HNO3 formation is the primary sink of nitrogen oxides, recent theoretical analyses show that formation of RONO2 (ΣANs) from isoprene and other terpene precursors is the primary net chemical loss of nitrogen oxides over the remote continents where the concentration of nitrogen oxides is low. This then increases the prominence of questions concerning the chemical lifetime and ultimate fate of ΣANs. We present observations of nitrogen oxides and organic molecules collected over the Canadian boreal forest during the summer which show that ΣANs account for ~20% of total oxidized nitrogen and that their instantaneous production rate is larger than that of HNO3. This confirms the primary role of reactions producing ΣANs as a control over the lifetime of NOx (NOx = NO + NO2) in remote, continental environments. However, HNO3 is generally present in larger concentrations than ΣANs indicating that the atmospheric lifetime of ΣANs is shorter than the HNO3 lifetime. We investigate a range of proposed loss mechanisms that would explain the inferred lifetime of ΣANs finding that in combination with deposition, two processes are consistent with the observations: (1) rapid ozonolysis of isoprene nitrates where at least ~40% of the ozonolysis products release NOx from the carbon backbone and/or (2) hydrolysis of particulate organic nitrates with HNO3 as a product. Implications of these ideas for our understanding of NOx and NOy budget in remote and rural locations are discussed.

We present a detailed analysis of OH observations from the BEACHON (Bio-hydro-atmosphere interactions of Energy, Aerosols, Carbon, H2O, Organics and Nitrogen)-ROCS (Rocky Mountain Organic Carbon Study) 2010 field campaign at the Manitou Forest Observatory (MFO), which is a 2-methyl-3-butene-2-ol (MBO) and monoterpene (MT) dominated forest environment. A comprehensive suite of measurements was used to constrain primary production of OH via ozone photolysis, OH recycling from HO2, and OH chemical loss rates, in order to estimate the steady-state concentration of OH. In addition, the University of Washington Chemical Model (UWCM) was used to evaluate the performance of a near-explicit chemical mechanism. The diurnal cycle in OH from the steady-state calculations is in good agreement with measurement. A comparison between the photolytic production rates and the recycling rates from the HO2 + NO reaction shows that recycling rates are ~20 times faster than the photolytic OH production rates from ozone. Thus, we find that direct measurement of the recycling rates and the OH loss rates can provide accurate predictions of OH concentrations. More importantly, we also conclude that a conventional OH recycling pathway (HO2 + NO) can explain the observed OH levels in this non-isoprene environment. This is in contrast to observations in isoprene-dominated regions, where investigators have observed significant underestimation of OH and have speculated that unknown sources of OH are responsible. The highly-constrained UWCM calculation under-predicts observed HO2 by as much as a factor of 8. As HO2 maintains oxidation capacity by recycling to OH, UWCM underestimates observed OH by as much as a factor of 4. When the UWCM calculation is constrained by measured HO2, model calculated OH is in better agreement with the observed OH levels. Conversely, constraining the model to observed OH only slightly reduces the model-measurement HO2 discrepancy, implying unknown HO2 sources. These findings demonstrate the importance of constraining the inputs to, and recycling within, the ROx radical pool (OH + HO2 + RO2).

Atmosphere–surface exchange of mercury, although a critical component of its global cycle, is currently poorly constrained. Here we use the GEOS-Chem chemical transport model to interpret atmospheric Hg0 (gaseous elemental mercury) data collected during the 2013 summer Nitrogen, Oxidants, Mercury and Aerosol Distributions, Sources and Sinks (NOMADSS) aircraft campaign as well as ground- and ship-based observations in terms of their constraints on the atmosphere–surface exchange of Hg0 over eastern North America. Model–observation comparison suggests that the Northwest Atlantic may be a net source of Hg0, with high evasion fluxes in summer (our best sensitivity simulation shows an average oceanic Hg0 flux of 3.3 ng m-2 h-1 over the Northwest Atlantic), while the terrestrial ecosystem in the summer of the eastern United States is likely a net sink of Hg0 (our best sensitivity simulation shows an average terrestrial Hg0 flux of -0.6 ng m-2 h-1 over the eastern United States). The inferred high Hg0 fluxes from the Northwest Atlantic may result from high wet deposition fluxes of oxidized Hg, which are in turn related to high precipitation rates in this region. We also find that increasing simulated terrestrial fluxes of Hg0 in spring compared to other seasons can better reproduce observed seasonal variability of Hg0 concentration at ground-based sites in eastern North America.

Nitrogen oxides are essential for the formation of secondary atmospheric aerosols and of atmospheric oxidants such as ozone and the hydroxyl radical, which controls the self-cleansing capacity of the atmosphere. Nitric acid, a major oxidation product of nitrogen oxides, has traditionally been considered to be a permanent sink of nitrogen oxides. However, model studies predict higher ratios of nitric acid to nitrogen oxides in the troposphere than are observed. A 'renoxification' process that recycles nitric acid into nitrogen oxides has been proposed to reconcile observations with model studies, but the mechanisms responsible for this process remain uncertain. Here we present data from an aircraft measurement campaign over the North Atlantic Ocean and find evidence for rapid recycling of nitric acid to nitrous acid and nitrogen oxides in the clean marine boundary layer via particulate nitrate photolysis. Laboratory experiments further demonstrate the photolysis of particulate nitrate collected on filters at a rate more than two orders of magnitude greater than that of gaseous nitric acid, with nitrous acid as the main product. Box model calculations based on the Master Chemical Mechanism suggest that particulate nitrate photolysis mainly sustains the observed levels of nitrous acid and nitrogen oxides at midday under typical marine boundary layer conditions. Given that oceans account for more than 70 per cent of Earth's surface, we propose that particulate nitrate photolysis could be a substantial tropospheric nitrogen oxide source. Recycling of nitrogen oxides in remote oceanic regions with minimal direct nitrogen oxide emissions could increase the formation of tropospheric oxidants and secondary atmospheric aerosols on a global scale.

The hydroxyl (OH) and hydroperoxyl (HO2) radicals, collectively called HOx, play central roles in tropospheric chemistry. Accurate measurements of OH and HO2 are critical to examine our understanding of atmospheric chemistry. Intercomparisons of different techniques for detecting OH and HO2 are vital to evaluate their measurement capabilities. Three instruments that measured OH and/or HO2 radicals were deployed on the NASA DC-8 aircraft throughout Arctic Research of the Composition of the Troposphere from Aircraft and Satellites (ARCTAS) in the spring and summer of 2008. One instrument was the Penn State Airborne Tropospheric Hydrogen Oxides Sensor (ATHOS) for OH and HO2 measurements based on Laser-Induced Fluorescence (LIF) spectroscopy. A second instrument was the NCAR Selected-Ion Chemical Ionization Mass Spectrometer (SI-CIMS) for OH measurement. A third instrument was the NCAR Peroxy Radical Chemical Ionization Mass Spectrometer (PeRCIMS) for HO2 measurement. Formal intercomparison of LIF and CIMS was conducted for the first time on a same aircraft platform. The three instruments were calibrated by quantitative photolysis of water vapor by ultraviolet (UV) light at 184.9 nm with three different calibration systems. The absolute accuracies were ±32% (2σ) for the LIF instrument, ±65% (2σ) for the SI-CIMS instrument, and ±50% (2σ) for the PeRCIMS instrument. In general, good agreement was obtained between the CIMS and LIF measurements of both OH and HO2 measurements. Linear regression of the entire data set yields [OH]CIMS = 0.89 × [OH]LIF + 2.8 × 104 cm−3 with a correlation coefficient r2 = 0.72 for OH, and [HO2]CIMS = 0.86 × [HO2]LIF + 3.9 parts per trillion by volume (pptv, equivalent to pmol mol−1) with a correlation coefficient r2 = 0.72 for HO2. In general, the difference between CIMS and LIF instruments for OH and HO2 measurements can be explained by their combined measurement uncertainties. Comparison with box model results shows some similarities for both the CIMS and LIF measurements. First, the observed-to-modeled HO2 ratio increases greatly for higher NO mixing ratios, indicating that the model may not properly account for HOx sources that correlate with NO. Second, the observed-to-modeled OH ratio increases with increasing isoprene mixing ratios, suggesting either incomplete understanding of isoprene chemistry in the model or interferences in the measurements in environments where biogenic emissions dominate ambient volatile organic compounds.

Observations of a comprehensive suite of inorganic and organic trace gases, including non-methane hydrocarbons (NMHCs), halogenated organics and oxygenated volatile organic compounds (OVOCs), obtained from the NASA DC-8 over Canada during the ARCTAS aircraft campaign in July 2008 illustrate that convection is important for redistributing both long- and short-lived species throughout the troposphere. Convective outflow events were identified by the elevated mixing ratios of organic species in the upper troposphere relative to background conditions. Several dramatic events were observed in which isoprene and its oxidation products were detected at hundreds of pptv at altitudes higher than 8 km. Two events are studied in detail using detailed experimental data and the NASA Langley Research Center (LaRC) box model. One event had no lightning NOx (NO + NO2) associated with it and the other had substantial lightning NOx (LNOx > 1 ppbv). When convective storms transport isoprene from the boundary layer to the upper troposphere and no LNOx is present, OH is reduced due to scavenging by isoprene, which serves to slow the chemistry, resulting in longer lifetimes for species that react with OH. Ozone and PAN production is minimal in this case. In the case where isoprene is convected and LNOx is present, there is a large effect on the expected ensuing chemistry: isoprene exerts a dominant impact on HOx and nitrogen-containing species; the relative contribution from other species to HOx, such as peroxides, is insignificant. The isoprene reacts quickly, resulting in primary and secondary products, including formaldehyde and methyl glyoxal. The model predicts enhanced production of alkyl nitrates (ANs) and peroxyacyl nitrate compounds (PANs). PANs persist because of the cold temperatures of the upper troposphere resulting in a large change in the NOx mixing ratios which, in turn, has a large impact on the HOx chemistry. Ozone production is substantial during the first few hours following the convection to the UT, resulting in a net gain of approximately 10 ppbv compared to the modeled scenario in which LNOx is present but no isoprene is present aloft.

Author(s): Kaser, L; Karl, T; Yuan, B; Mauldin, RL; Cantrell, CA; Guenther, AB; Patton, EG; Weinheimer, AJ; Knote, C; Orlando, J; Emmons, L; Apel, E; Hornbrook, R; Shertz, S; Ullmann, K; Hall, S; Graus, M; De Gouw, J; Zhou, X; Ye, C | Abstract: The hydroxyl radical (OH) is the most important oxidant in the atmosphere and the primary sink for isoprene, the dominant volatile organic compound emitted by vegetation. Recent research on the atmospheric oxidation capacity in isoprene-dominated environments has suggested missing radical sources leading to significant overestimation of the lifetime of isoprene. Here we report, for the first time, a comprehensive experimental budget of isoprene in the planetary boundary layer based on airborne flux measurements along with in situ OH observations in the Southeast and Central U.S. Our findings show that surface heterogeneity of isoprene emissions lead to a physical separation of isoprene and OH resulting in an effective slowdown in the chemistry. Depending on surface heterogeneity, the intensity of segregation (Is) could locally slow down isoprene chemistry up to 30%. The effect of segregated reactants in the planetary boundary layer on average has an influence on modeled OH radicals that is comparable to that of recently proposed radical recycling mechanisms.

Detailed comparisons of airborne CH2O measurements acquired by tunable diode laser absorption spectroscopy with steady state box model calculations were carried out using data from the 2006 INTEX-B and MILARGO campaign in order to improve our understanding of hydrocarbon oxidation processing. This study includes comparisons over Mexico (including Mexico City), the Gulf of Mexico, parts of the continental United States near the Gulf coast, as well as the more remote Pacific Ocean, and focuses on comparisons in the boundary layer. Select previous comparisons in other campaigns have highlighted some locations in the boundary layer where steady state box models have tended to underpredict CH2O, suggesting that standard steady state modeling assumptions might be unsuitable under these conditions, and pointing to a possible role for unmeasured hydrocarbons and/or additional primary emission sources of CH2O. Employing an improved instrument, more detailed measurement-model comparisons with better temporal overlap, up-to-date measurement and model precision estimates, up-to-date rate constants, and additional modeling tools based on both Lagrangian and Master Chemical Mechanism (MCM) runs, we have explained much of the disagreement between observed and predicted CH2O as resulting from non-steady-state atmospheric conditions in the vicinity of large pollution sources, and have quantified the disagreement as a function of plume lifetime (processing time). We show that in the near field (within ~4 to 6 h of the source), steady-state models can either over-or-underestimate observations, depending on the predominant non-steady-state influence. In addition, we show that even far field processes (10–40 h) can be influenced by non-steady-state conditions which can be responsible for CH2O model underestimations by ~20%. At the longer processing times in the 10 to 40 h range during Mexico City outflow events, MCM model calculations, using assumptions about initial amounts of high-order NMHCs, further indicate the potential importance of CH2O produced from unmeasured and multi-generation hydrocarbon oxidation compounds, particularly methylglyoxal, 3-hydroxypropanal, and butan-3-one-al.

The Pacific Atmospheric Sulfur Experiment (PASE) was a field mission that took place aboard the NCAR C-130 airborne laboratory over the equatorial Pacific Ocean near Christmas Island (Kirimati, Republic of Kiribati) during August–September, 2007. Eddy covariance measurements of the ozone fluxes at various altitudes above the ocean surface, along with simultaneous mapping of the horizontal gradients provided a unique opportunity to observe all of the dynamical components of the ozone budget in this remote marine environment. The results of six daytime and two sunrise flights indicate that vertical transport into the marine boundary layer from above and horizontal advection by the tradewinds are both important source terms, while photochemical destruction consisting of 82% photolysis (leading to OH production), 11% reaction with HO2, and 7% reaction with OH provides the main sink. The overall photochemical lifetime of ozone in the marine boundary layer was found to be 6.5 days. Ocean uptake of ozone was observed to be fairly slow (mean deposition velocity of 0.024 ± 0.014 cm s−1) accounting for a diurnally averaged loss rate that was ∼30% as large as the net photochemical destruction. From the measurement of deposition velocity an ozone reactivity of ∼50 s−1 in seawater is inferred. Due to the unprecedented measurement accuracy of the dynamical budget terms, unobserved photochemistry was able to be deduced, leading to the conclusion that 3.9 ± 3.0 ppt (parts per trillion by volume) of NO is present on average in the daytime tropical marine boundary layer, broadly consistent with several previous studies in similar environments. It is estimated, however, that each ppt of BrO hypothetically present would counter each ppt of NO above the requisite 3.9 ppt needed for budget closure. The long-term budget of ozone is further analyzed in the buffer layer, between the boundary layer and free troposphere, and used to derive an entrainment velocity across the trade wind inversion of 0.51 ± 0.38 cm s−1.

The Pacific Atmospheric Sulfur Experiment (PASE) was a comprehensive airborne study of the chemistry and dynamics of the tropical trade wind regime (TWR) east of the island of Kiritibati (Christmas Island, 157o, 20′ W, 2o 52′ N). Christmas Island is located due south of Hawaii. Geographically it is in the northern hemisphere yet it is 6–12o south of the intertropical convergence zone (ITCZ) which places it in the southern hemisphere meteorologically. Christmas Island trade winds in August and September are from east south east at 3–15 ms−1. Clouds, if present, are fair weather cumulus located in the middle layer of the TWR which is frequently labeled the buffer layer (BuL). PASE provided clear support for the idea that small particles (80 nm) were subsiding into the tropical trade wind regime (TWR) where sulfur chemistry transformed them to larger particles. Sulfur chemistry promoted the growth of some of these particles until they were large enough to activate to cloud drops. This process, promoted by sulfur chemistry, can produce a cooling effect due to the increase in cloud droplet density and changes in cloud droplet size. These increases in particle size observed in PASE promote additional cooling due to direct scattering from the aerosol. These potential impacts on the radiation balance in the TWR are enhanced by the high solar irradiance and ocean albedo of the TWR. Finally because of the large area involved there is a large factional impact on earth’s radiation budget. The TWR region near Christmas Island appears to be similar to the TWR that persists in August and September, from southwest of the Galapagos to at least Christmas Island. Transport in the TWR between the Galapagos and Christmas involves very little precipitation which could have removed the aerosol thus explaining at least in part the high concentrations of CCN (≈300 at 0.5% supersaturation) observed in PASE. As expected the chemistry of sulfur in the trade winds was found to be initiated by the emission of DMS into the convective boundary layer (BL, the lowest of three layers). However, the efficiency with which this DMS is converted to SO2 has been brought into further question by this study. This unusual result has come about as result of our using two totally different approaches for addressing this long standing question. In the first approach, based on accepted kinetic rate constants and detailed steps for the oxidation of DMS reflecting detailed laboratory studies, a DMS to SO2 conversion efficiency of 60–73% was determined. This range of values lies well within the uncertainties of previous studies. However, using a completely different approach, involving a budget analysis, a conversion value of 100% was estimated. The latter value, to be consistent with all other sulfur studies, requires the existence of a completely independent sulfur source which would emit into the atmosphere at a source strength approximately half that measured for DMS under tropical Pacific conditions. At this time, however, there is no credible scientific observation that identifies what this source might be. Thus, the current study has opened for future scientific investigation the major question: is there yet another major tropical marine source of sulfur? Of equal importance, then, is the related question, is our global sulfur budget significantly in error due to the existence of an unknown marine source of sulfur? Pivotal to both questions may be gaining greater insight about the intermediate DMS oxidation species, DMSO, for which rather unusual measurements have been reported in previous marine sulfur studies. The 3 pptv bromine deficit observed in PASE must be lost over the lifetime of the aerosol which is a few days. This observation suggests that the primary BrO production rate is very small. However, considering the uncertainties in these observations and the possible importance of secondary production of bromine radicals through aerosol surface reactions, to completely rule out the importance of bromine chemistry under tropical conditions at this time cannot be justified. This point has been brought into focus from prior work that even at levels of 1 pptv, the effect of BrO oxidation on DMS can still be quite significant. Thus, as in the case of DMS conversion to SO2, future studies will be needed. In the latter case there will need to be a specific focus on halogen chemistry. Such studies clearly must involve specific measurements of radical species such as BrO.

The representation of data, whether geophysical observations, numerical model output or laboratory results, by a best fit straight line is a routine practice in the geosciences and other fields. While the literature is full of detailed analyses of procedures for fitting straight lines to values with uncertainties, a surprising number of scientists blindly use the standard least-squares method, such as found on calculators and in spreadsheet programs, that assumes no uncertainties in the x values. Here, the available procedures for estimating the best fit straight line to data, including those applicable to situations for uncertainties present in both the x and y variables, are reviewed. Representative methods that are presented in the literature for bivariate weighted fits are compared using several sample data sets, and guidance is presented as to when the somewhat more involved iterative methods are required, or when the standard least-squares procedure would be expected to be satisfactory. A spreadsheet-based template is made available that employs one method for bivariate fitting.

As part of the Deep Convective Cloud and Chemistry (DC3) experiment, the National Science Foundation/National Center for Atmospheric Research (NCAR) Gulfstream-V (GV) and NASA DC-8 research aircraft probed the chemical composition of the inflow and outflow of two convective storms (north storm, NS, south storm, SS) originating in the Colorado region on 22 June 2012, a time when the High Park wildfire was active in the area. A wide range of trace species were measured on board both aircraft including biomass burning (BB) tracers hydrogen cyanide (HCN) and acetonitrile (ACN). Acrolein, a much shorter lived tracer for BB, was also quantified on the GV. The data demonstrated that the NS had ingested fresh smoke from the High Park fire and as a consequence had a higher VOC OH reactivity than the SS. The SS lofted aged fire tracers along with other boundary layer ozone precursors and was more impacted by lightning NO_x (LNO_x) than the NS. The NCAR master mechanism box model was initialized with measurements made in the outflow of the two storms. The NS and SS were predicted to produce 11 and 14 ppbv of O_3, respectively, downwind of the storm over 2 days. Sensitivity tests revealed that the ozone production potential of the SS was highly dependent on LNO_x. Normalized excess mixing ratios, ΔX/ΔCO, for HCN and ACN were determined in both the fire plume and the storm outflow and found to be 7.0 ± 0.5 and 2.3 ± 0.5 pptv ppbv^(−1), respectively, and 1.4 ± 0.3 pptv ppbv^(−1) for acrolein in the outflow only.

The objective of this study was to differentiate between 3 measures of antidepressant adherence with regard to the number of patients deemed adherent to therapy and the association between adherence and resource utilization.The authors conducted a retrospective study of patients initiating selective serotonin reuptake inhibitor (SSRI) therapy for depression and/or anxiety between July 2001 and June 2002 in a large national managed care database.Rates of 6-month SSRI adherence were measured by 3 different metrics: length of therapy (LOT), medication possession ratio (MPR), and combined MPR/LOT. Differences in resource utilization for each adherence metric were measured for patients deemed as 1) adherent, 2) nonadherent, 3) therapy changers, and 4) dose titraters.There were 22,947 patients meeting study criteria. Although statistically different, 6-month adherence rates were numerically similar across all methods (LOT, 44.6%; MPR, 43.3%; and MPR/LOT, 42.9%, P0.001); approximately 57% of patients were nonadherent to therapy. Regardless of metric, the adherent cohort incurred the lowest yearly medical costs, followed by the nonadherent, titrate, and therapy change cohorts (P0.001 between adherent cohort and all other cohorts). The LOT method produced the greatest difference in yearly medical costs between adherent and nonadherent patients (Dollars 511) followed by MPR/LOT (Dollars 432) and MPR (Dollars 423). When antidepressant prescription costs were added to medical costs, patients requiring a therapy change and titrating therapy incurred higher costs than adherent patients, whereas nonadherent and adherent patients incurred similar costs.Regardless of adherence metric, approximately 43% of patients were adherent to antidepressant therapy, and adherent patients were associated with the lowest yearly medical costs.

Placement of fish migration barriers (primarily of gabion construction) on select streams is one of the major recovery actions used to isolate and protect upstream populations of Apache trout Oncorhynchus gilae apache from downstream populations of nonnative salmonids. However, the effectiveness of the recovery action has not been evaluated. We evaluated the success of constructed barriers at preventing upstream movement of nonnative salmonids into areas occupied by native Apache trout. We collected and marked salmonids downstream of six barriers on six streams in the White Mountains of east-central Arizona and subsequently electrofished upstream of the barriers to determine whether marked fish had moved past them. Only 1 of 1,436 marked salmonids was collected upstream of one of the six barriers evaluated over a 3-year period. Our results showed that the barriers evaluated in our study are effective for a short term; however, long-term evaluation is needed, as these failure rates represent minim...

Information on habitat selection by Apache trout Oncorhynchus gilae apache is needed to help recovery efforts for this federally threatened species. We investigated Apache trout habitat selection in six White Mountain streams in east-central Arizona. We measured environmental characteristics at used sites and randomly selected available sites and modeled habitat selection using forward step-wise logistic regression, for two size-classes of Apache trout (≤100 mm and >100 mm total length [TL]). We also compared overall habitat type selection using contingency table analysis and G-tests. Our logistic regression models correctly predicted habitat selection by 100-mm TL or smaller Apache trout for 62.8% of sites over all streams surveyed and that by Apache trout larger than 100 mm TL for 75% of sites. Logistic regression models determined that larger width, lower width: Depth ratio, more eddy flows, and more cover in the form of overhanging vegetation, debris, and boulders were significant predictors ...

The chemistry of peroxynitric acid (HO2NO2) and methyl peroxynitrate (CH3O2NO2)is predicted to be particularly important in the upper troposphere where temperatures are frequently low enough that these compounds do not rapidly decompose. At temperatures below 240K, we calculate that about 20% of NOy in the mid- and high-latitude upper troposphere is HO2NO2. Under these conditions, the reaction of OH with HO2NO2 is estimated to account for as much as one third of the permanent loss of hydrogen radicals. During the Tropospheric Ozone Production about the Spring Equinox (TOPSE) campaign, we used thermal dissociation laser-induced fluorescence (TD-LIF) to measure the sum of peroxynitrates (PNs HO2NO2+CH3O2NO2+PAN+PPN+...) aboard the NCAR C-130 research aircraft. We infer the sum of HO2NO2 and CH3O2NO2 as the difference between PN measurements and gas chromatographic measurements of the two major peroxy acyl nitrates, peroxy acetyl nitrate (PAN) and peroxy propionyl nitrate (PPN). Comparison with NOy and other nitrogen oxide measurements confirms the importance of HO2NO2 and CH3O2NO2 to the reactive nitrogen budget and shows that current thinking about the chemistry of these species is approximately correct. During the spring high latitude conditions sampled during the TOPSE experiment, the model predictions of the contribution of (HO2NO2+CH3O2NO2) to NOy are highly temperature dependent: on average 30% of NOy at 230K, 15% of NOy at 240K, and 5% of NOy above 250K. The temperature dependence of the inferred concentrations corroborates the contribution of overtone photolysis to the photochemistry of peroxynitric acid. A model that includes IR photolysis (J=1x10-5s-1) agreed with the observed sum of HO2NO2+CH3O2NO2 to better than 35% below 240K where the concentration of these species is largest.

Local ozone production and loss rates for the arctic free troposphere (58–85° N, 1–6 km, February–May) during the TroposphericOzone Production about the Spring Equinox (TOPSE) campaign were calculated using a constrained photochemical box model. Estimates were made to assess the importance of local photochemical ozone production relative to transport in accounting for the springtime maximum in arctic free tropospheric ozone. Ozone production and loss rates from our diel steady-state box model constrained by median observations were first compared to two point box models, one run to instantaneous steady-state and the other run to diel steady-state. A consistent picture of local ozone photochemistry was derived by all three box models suggesting that differences between the approaches were not critical. Our model-derived ozone production rates increased by a factor of 28 in the 1–3 km layer and a factor of 7 in the 3–6 kmlayer between February and May. The arctic ozone budget required net import of ozone into the arctic free troposphere throughout the campaign; however, the transport term exceeded the photochemical production only in the lower free troposphere (1–3 km) between February and March. Gross ozone production rates were calculated to increase linearly with NOx mixing ratiosup to ∼300 pptv in February and for NOx mixing ratios up to ∼500 pptv in May. These NOx limits are an order of magnitude higher thanmedian NOx levels observed, illustrating the strong dependence ofgross ozone production rates on NOx mixing ratios for the majority of theobservations. The threshold NOx mixing ratio needed for netpositive ozone production was also calculated to increase from NOx∼ 10pptv in February to ∼25 pptv in May, suggesting that the NOx levels needed to sustain net ozone production are lower in winter than spring. This lower NOx threshold explains how wintertime photochemical ozone production can impact the build-up of ozone over winter and early spring. There is also an altitude dependence as the threshold NOx neededto produce net ozone shifts to higher values at lower altitudes. This partly explains the calculation of net ozone destruction for the 1–3 km layerand net ozone production for the 3–6 km layer throughout the campaign.

Laboratory characterizations of the peroxy radical chemical ionization mass spectrometer (PerCIMS) instrument have been performed. The instrument functions by drawing ambient air through a 50-microm-diameter orifice into an inlet held at low pressure. Peroxy radicals (HO2 and RO2) within this air are detected by amplified chemical conversion into a unique ion (HSO4-) via the chemistry initiated by the addition of NO and SO2 to the inlet. HSO4- ions are then quantified by a quadrupole filter mass spectrometer. PerCIMS provides measurements of the sum of peroxy radicals, HO2 + RO2 (HOxROx mode), or the HO2 component only (HO2 mode), achieved through the control of concentration of NO and SO2 added to the instrument. The characterization and response of this instrument have been evaluated through modeling of inlet chemistry and laboratory experiments and have also been demonstrated through successful deployment during field campaigns. The performance of PerCIMS with respect to calibration pressure and relative humidity is reported, as are the sensitivities of the instrument to organic peroxy radicals with different hydrocarbon groups. These data show PerCIMS to be a practical field instrument for the fast and accurate evaluation of the concentration of peroxy radicals over a variety of atmospheric conditions. The estimated accuracy of the derived [HOxROx] concentrations is +/- 35% (at the 95% confidence interval), while [HO2] measurements have accuracies of +/- 41% (at the 95% confidence interval). Typical precision of measurements well above the detection limit is 10%, and typical detection limits are 1 x 10(7) radicals cm(-3) for 15-s averaging times.

The Bio-hydro-atmosphere interactions of Energy, Aerosols, Carbon, H2O, Organics & Nitrogen (BEACHON) project seeks to understand the feedbacks and inter-relationships between hydrology, biogenic emissions, carbon assimilation, aerosol properties, clouds and associated feedbacks within water-limited ecosystems. The Manitou Experimental Forest Observatory (MEFO) was established in 2008 by the National Center for Atmospheric Research to address many of the BEACHON research objectives, and it now provides a fixed field site with significant infrastructure. MEFO is a mountainous, semi-arid ponderosa pine-dominated forest site that is normally dominated by clean continental air but is periodically influenced by anthropogenic sources from Colorado Front Range cities. This article summarizes the past and ongoing research activities at the site, and highlights some of the significant findings that have resulted from these measurements. These activities include - soil property measurements; - hydrological studies; - measurements of high-frequency turbulence parameters; - eddy covariance flux measurements of water, energy, aerosols and carbon dioxide through the canopy; - determination of biogenic and anthropogenic volatile organic compound emissions and their influence on regional atmospheric chemistry; - aerosol number and mass distributions; - chemical speciation of aerosol particles; - characterization of ice and cloud condensation nuclei; - trace gas measurements; and - model simulations using coupled chemistry and meteorology. In addition to various long-term continuous measurements, three focused measurement campaigns with state-of-the-art instrumentation have taken place since the site was established, and two of these studies are the subjects of this special issue: BEACHON-ROCS (Rocky Mountain Organic Carbon Study, 2010) and BEACHON-RoMBAS (Rocky Mountain Biogenic Aerosol Study, 2011).

During the second phase of the NASA Pacific Exploratory Mission to the Pacific Tropics (PEM-Tropics B), regions of unusually high concentrations of sulfuric acid vapor ranging from 107 to 108 molecules cm−3 were detected near the ocean surface in equatorial regions between Hawaii and Tahiti. No 3–4 nm diameter nanoparticles were observed near the ocean surface where acid concentrations were highest; however, 3–4 nm particles were detected at higher elevations in regions near clouds. Calculations show that in some regions of high acid concentrations newly formed particles would be readily detected by our instruments and thus the lack of nanoparticles suggests that there was no nucleation. In contrast, in the previous PEM-Tropics A mission Clarke et al. [1998a] observed a large nucleation event in the equatorial marine boundary layer under similar temperatures, relative humidity, and sulfuric acid concentrations. Comparison between these two studies further demonstrates that some additional species or unknown process is necessary to significantly enhance nucleation in the remote marine troposphere and that this component is not always present at levels sufficient to sustain nucleation throughout the region, even at a low continuous rate. We speculate that if ammonia is one example of a critical nucleation precursor, tropospheric ternary nucleation (sulfuric acid/ammonia/water) under some conditions requires ammonia concentrations to be greater than typical background concentrations for particle production via this mechanism.

Reported here are tropical/subtropical Pacific basin OH observational data presented in a latitude/altitude geographical grid. They cover two seasons of the year (spring and fall) that reflect the timing of NASA's PEM-Tropics A (1996) and B (1999) field programs. Two different OH sensors were used to collect these data, and each instrument was mounted on a different aircraft platform (i.e., NASA's P-3B and DC-8). Collectively, these chemical snapshots of the central Pacific have revealed several interesting trends. Only modest decreases (factors of 2 to 3) were found in the levels of OH with increasing altitude (0–12 km). Similarly, only modest variations were found (factors of 1.5 to 3.5) when the data were examined as a function of latitude (30°N to 30°S). Using simultaneously recorded data for CO, O3, H2O, NO, and NMHCs, comparisons with current models were also carried out. For three out of four data subsets, the results revealed a high level of correspondence. On average, the box model results agreed with the observations within a factor of 1.5. The comparison with the three-dimensional model results was found to be only slightly worse. Overall, these results suggest that current model mechanisms capture the major photochemical processes controlling OH quite well and thus provide a reasonably good representation of OH levels for tropical marine environments. They also indicate that the two OH sensors employed during the PEM-Tropics B study generally saw similar OH levels when sampling a similar tropical marine environment. However, a modest altitude bias appears to exist between these instruments. More rigorous instrument intercomparison activity would therefore seem to be justified. Further comparisons of model predictions with observations are also recommended for nontropical marine environments as well as those involving highly elevated levels of reactive non-methane hydrocarbons.

Airborne measurements of the hydroxyl radical were performed aboard the NASA P-3B using the Selected Ion Chemical Ionization technique during the Pacific Exploratory Mission (PEM)-Tropics B study. Typical midday boundary layer OH concentrations of 6-7 x 6 -3 10 molecule cm were observed in the vicinityf Christmas Island (0o-3oN), and 7-8 x 10  molecule cm '3 in the vicinity of Tahiti (17o-22oS). Photochemical box model calculahons of the concentration of OH ((OH)) throughout the entire mission yield generally good agreement (slope = 1.26) with a tendency for the model to slightly overestimate the measured OH. Boundary layer measurements of OH in an air mass containing low ozone concentrations (

OH measurements were performed on both the P3-B and the DC-8 aircraft throughout Pacific Exploratory Mission (PEM) Tropics B, using two very different measurement techniques. While no direct comparison was possible because of the difference in flight paths of the two aircraft, two brief measurement periods in close proximity allow at least a glimpse of how the two measurements compare. The first comparison took place in the marine boundary layer and showed exceptionally good agreement between the two aircraft OH measurements. The second set of close proximity flights at 5.5-km altitude resulted in an average concentration difference approximately equal to the uncertainty limit associated with either individual instrument but much less than the combined uncertainties from all the contributing measurements. In both cases the comparisons were made by normalizing the data with a photostationary state model. In addition, a comparison of the OH concentrations measured by each aircraft from 25°N latitude to 25°S latitude over the entire longitude and altitude range of the mission resulted in agreement within ∼10% but with a trend of higher DC-8/P-3B OH ratios at higher altitudes. While a definitive comparison of these two OH instruments must await a far more rigorous future test, the present results show that there were no clear OH measurement discrepancies observed. The dramatic differences in these two measurement techniques also minimizes the chance of common interferences or calibration errors.

A series of controlled experiments were carried out in the Calspan Corporation's 600 m3 environmental chamber to study some secondary organic aerosol formation processes. Three precursor-ozone systems were studied: cyclopentene-ozone, cyclohexene-ozone, and α-pineneozone. Additionally, SO2 was added to the initial gas mixture in several instances and was likely present at trace levels in the ostensibly organic-only experiments. It was found that all three systems readily formed new submicron aerosols at very low reactant levels. The chemical composition of formed aerosols was consistent with some previous studies, but the yields of organic products were found to be lower in the Calspan experiments. A three-step procedure is proposed to explain the observed particle nucleation behavior: HO · production → H2SO4 formation → H2SO4-H2O (perhaps together with NH3) homogeneous nucleation. It is also proposed that some soluble organic products would partition into the newly formed H2SO4-H2O nuclei, enhance water condensation, and quickly grow these nuclei into a larger size range. While the observations in the two cycloolefin-ozone systems could be well explained by these proposed mechanisms, the exact nature of the nucleation process in the α-pinene-ozone system remains rather opaque and could be the result of nucleation involving certain organics. The results from three simple modeling studies further support these proposals. Their applicability to the marine boundary layer (MBL) is also discussed in some detail. Particularly, such a particle nucleation and growth process could play an important role in secondary aerosol formation and, quite likely, CCN formation as well in certain MBL regions.

Observations of particle nucleation and growth during ozonolysis of α-pinene were carried out in Calspan's 600 m3 environmental chamber utilizing relatively low concentrations of α-pinene (15 ppb) and ozone (100 ppb). Model simulations with a comprehensive sectional aerosol model which incorporated the relevant gas-phase chemistry show that the observed evolution of the size distribution could be simulated within the accuracy of the experiment by assuming only one condensable product produced with a molar yield of 5% to 6% and a saturation vapor pressure (SVP) of about 0.01 ppb or less. While only one component was required to simulate the data, more than one product may have been involved, in which case the one component must be viewed as a surrogate having an effective SVP of 0.01 ppb or less. Adding trace amounts of SO2 greatly increased the nucleation rate while having negligible effect on the overall aerosol yield. We are unable to explain the observed nucleation in the α-pinene/ozone system in terms of classical nucleation theory. The nucleation rate and, more importantly, the slope of the nucleation rate versus the vapor pressure of the nucleating species would suggest that the nucleation rate in the α-pinene/ozone system may be limited by the initial nucleation steps (i.e., dimer, trimer, or adduct formation).

This paper reports the first simultaneous fast-time resolution measurements of dimethylsulfide (DMS), dimethylsulfoxide (DMSO), and the hydroxyl radical (OH) at marine tropical latitudes. These observations were recorded during the PEM-Tropics B field program on NASA's P-3B aircraft. The observations of DMSO, using a Selected Ion Chemical Ionization Mass Spectrometry (SICIMS) technique, are of particular significance. They have revealed two unique findings: 1) average midday-tropical levels of DMSO are significantly higher than those predicted from current models when constrained by observed DMS and OH levels (e.g., 10 pptv versus 1 to 3 pptv); and 2) DMSO concentration profiles are significantly out-of-phase with model predictions, maximum values being seen under near dark conditions and minimum values being observed at midday. Although no simple explanation has yet been found for these unusual results, the fact that no evidence points to a problem in the measurements suggests that others may exist. Clearly, if the observations are correct, they indicate that at least for tropical upwelling regions the atmospheric sulfur budget may need to be adjusted to accommodate additional sources of DMSO.

Organic peroxy (RO2) and hydroperoxy (HO2) radicals are key intermediates in the photochemical processes that generate ozone, secondary organic aerosol and reactive nitrogen reservoirs throughout the troposphere. In regions with ample biogenic hydrocarbons, the richness and complexity of peroxy radical chemistry presents a significant challenge to current-generation models, especially given the scarcity of measurements in such environments. We present peroxy radical observations acquired within a Ponderosa pine forest during the summer 2010 Bio-hydro-atmosphere interactions of Energy, Aerosols, Carbon, H2O, Organics and Nitrogen – Rocky Mountain Organic Carbon Study (BEACHON-ROCS). Total peroxy radical mixing ratios reach as high as 180 pptv and are among the highest yet recorded. Using the comprehensive measurement suite to constrain a near-explicit 0-D box model, we investigate the sources, sinks and distribution of peroxy radicals below the forest canopy. The base chemical mechanism underestimates total peroxy radicals by as much as a factor of 3. Since primary reaction partners for peroxy radicals are either measured (NO) or under-predicted (HO2 and RO2, i.e. self-reaction), missing sources are the most likely explanation for this result. A close comparison of model output with observations reveals at least two distinct source signatures. The first missing source, characterized by a sharp midday maximum and a strong dependence on solar radiation, is consistent with photolytic production of HO2. The diel profile of the second missing source peaks in the afternoon and suggests a process that generates RO2 independently of sun-driven photochemistry, such as ozonolysis of reactive hydrocarbons. The maximum magnitudes of these missing sources (~ 120 and 50 pptv min−1, respectively) are consistent with previous observations alluding to unexpectedly intense oxidation within forests. We conclude that a similar mechanism may underlie many such observations.

During the Mauna Loa Observatory Photochemistry Experiment (MLOPEX 2), simultaneous measurements of a large number of photochemical species were measured during different seasons at Mauna Loa Observatory (MLO), Hawaii. In this study, these measurements are used to constrain a detailed photochemical box model and evaluate our understanding of the tropospheric photochemistry in this region of the Pacific. The simulations generally reproduce satisfactorily the NO/NO 2 photostationary state, which controls the ozone production rate. However, the model fails in simulating the concentration of peroxy radicals (PO 2 ) during all seasons and of hydroxyl radical (OH) during summer. Several hypotheses are considered to assess this discrepancy, including the removal of radicals by unidentified mechanisms and the potential impact of biogenic organic compounds. None of the tested hypotheses give satisfactorily results in terms of OH, PO 2 and NO/NO 2 simultaneously. Although experimental uncertainties are large for radicals, this issue constitutes a major inconsistency between measurements and model results during MLOPEX. Another disagreement arises from the simulation of peroxides for free tropospheric conditions. The model tends to overestimate H 2 O 2 and CH 3 OOH by a factor of 1.5-2.5. On the other hand, a fair agreement is achieved in simulating formaldehyde when CH 3 OOH is constrained in the model. Finally, we find that the gross ozone production and destruction rates are nearly in balance in this region of the Pacific troposphere. The net production is slightly negative, ranging from nearly 0 in winter to about -1.4 ppbv/d during summer. In contrast, the NO x budget shows a severe imbalance. Our results indicate that an additional source of NO x ranging from 18 to 48 pptv/d (in winter and summer, respectively) would be required to sustain the 30 pptv of NO x measured on average at the site during free tropospheric conditions. Acetone has little effect on the budget of HO x at the altitude of MLO (3.4 km). However, including this species in the model induces an even larger imbalance in the NO x budget through the production of peroxyacetylnitrate.

Absorption cross sections for water vapor at 184.9 nm were measured using a standard low-pressure mercury lamp light source, optically filtered to isolate the spectral region near the emission line. The light from the source was detected using a solar-blind phototube. Experiments were performed over a wide range of water column amounts, using neat water vapor and water vapor/nitrogen mixtures, with four methods to determine the water vapor concentration in the cell. Absorption cross sections were measured between 0 and 80°C. The results from these experiments yield a cross section of 7.14 (± 0.2) × 10−20 cm² molecule−1 at 25°C with a small positive temperature dependence (about 4% between 0 and 80°C). This result is about 30% greater than current recommendations. The absorption spectrum was also measured at discrete wavelengths between 183 and 193 nm using a scanning double monochromator system. The cross section of deuterated water vapor was determined at 184.9 nm. The implications of the changes in the H2O cross section for the calibration of atmospheric OH and HO2 measurements using the 184.9 nm photolysis of water vapor are discussed.

The chemical amplifier (CA) was used to measure the concentration of the peroxy radicals present in the nighttime atmosphere at the Mauna Loa Observatory (MLO) during the Mauna Loa Observatory Photochemistry Experiment (MLOPEX 2) from April 15 to May 15, 1992. Simultaneous measurements were also made of peroxy radicals using a modified OH instrument during one period of 56-hour duration. Both instruments observe experimentally significant nighttime signals, but the magnitude of the larger CA signal appears to result from organic peroxy radicals to which the modified OH instrument is insensitive. The data from about one half of the nights showed a decay of the radical signal from 2000 to 0400 HST the next morning. The decay rates followed roughly those expected for primary or secondary alkyl peroxy radicals. However, data from the other half of nights showed an increase in radical concentration with time, which reflected significant radical generation rates. Several alternatives are considered in explanation of the results. (1) The possible origin of the signals from the interference of HO 2 NO 2 , presumably transported from reservoirs at higher elevations, was considered. The data are inconclusive, and this hypothesis is tentatively rejected. (2) The nighttime chemistry of the O 3 and NO 3 was also considered. The observed trace gases provide in theory only a small fraction of the peroxy radical signal seen on many nights. However, the presence of 1-30 parts per trillion by volume (pptv) of CH 3 SCH 3 , a compound not measured but expected to be present at MLO, can react with NO 3 to produce peroxy radical signals of the magnitude observed. It is concluded that this ubiquitous compound over the oceans offers the best current hypothesis to rationalize the nighttime generation of peroxy radicals at MLO.

Concentrations of peroxy radicals and a number of other trace gases were measured during the Tropospheric OH Photochemistry Experiment in August and September, 1993. The trace gas concentrations were used to derive two estimates of peroxy radical levels: deviations from the photostationary state, and theoretical calculations with the assumption of steady state radical concentrations. As in many previous studies, the photostationary state method yielded midday peroxy radical levels about twice those measured. Calculations were performed to assess the expected uncertainty in the photostationary state derived peroxy radical concentrations from the uncertainty of the input parameters. The agreement between measurements and steady state determinations was better than the photostationary state estimates, with the measurements slightly higher on average. Radical formation and destruction rates for clear sky conditions with low and high NOx were derived from the steady state calculations and the results demonstrate the processes that control peroxy radical levels in clean and polluted continental atmospheres.