34 results on '"Chouri E"'
Search Results
2. Fatty Acid and Carnitine Metabolism Are Dysregulated in Systemic Sclerosis Patients
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Ottria, A., Hoekstra, A. T., Zimmermann, M., van der Kroef, M., Vazirpanah, N., Cossu, M., Chouri, E., Rossato, M., Beretta, L., Tieland, R. G., Wichers, C. G.K., Stigter, E., Gulersonmez, C., Bonte-Mineur, F., Berkers, C. R., Radstake, T. R.D.J., Marut, W., Ottria, A., Hoekstra, A. T., Zimmermann, M., van der Kroef, M., Vazirpanah, N., Cossu, M., Chouri, E., Rossato, M., Beretta, L., Tieland, R. G., Wichers, C. G.K., Stigter, E., Gulersonmez, C., Bonte-Mineur, F., Berkers, C. R., Radstake, T. R.D.J., and Marut, W.
- Abstract
Systemic sclerosis (SSc) is a rare chronic disease of unknown pathogenesis characterized by fibrosis of the skin and internal organs, vascular alteration, and dysregulation of the immune system. In order to better understand the immune system and its perturbations leading to diseases, the study of the mechanisms regulating cellular metabolism has gained a widespread interest. Here, we have assessed the metabolic status of plasma and dendritic cells (DCs) in patients with SSc. We identified a dysregulated metabolomic signature in carnitine in circulation (plasma) and intracellularly in DCs of SSc patients. In addition, we confirmed carnitine alteration in the circulation of SSc patients in three independent plasma measurements from two different cohorts and identified dysregulation of fatty acids. We hypothesized that fatty acid and carnitine alterations contribute to potentiation of inflammation in SSc. Incubation of healthy and SSc dendritic cells with etoposide, a carnitine transporter inhibitor, inhibited the production of pro-inflammatory cytokines such as IL-6 through inhibition of fatty acid oxidation. These findings shed light on the altered metabolic status of the immune system in SSc patients and opens up for potential novel avenues to reduce inflammation.
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- 2020
3. Fatty Acid and Carnitine Metabolism Are Dysregulated in Systemic Sclerosis Patients
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Sub Biomol.Mass Spectrometry & Proteom., Veterinaire biochemie, dB&C FR-RMSC RMSC, Biomolecular Mass Spectrometry and Proteomics, Ottria, A., Hoekstra, A. T., Zimmermann, M., van der Kroef, M., Vazirpanah, N., Cossu, M., Chouri, E., Rossato, M., Beretta, L., Tieland, R. G., Wichers, C. G.K., Stigter, E., Gulersonmez, C., Bonte-Mineur, F., Berkers, C. R., Radstake, T. R.D.J., Marut, W., Sub Biomol.Mass Spectrometry & Proteom., Veterinaire biochemie, dB&C FR-RMSC RMSC, Biomolecular Mass Spectrometry and Proteomics, Ottria, A., Hoekstra, A. T., Zimmermann, M., van der Kroef, M., Vazirpanah, N., Cossu, M., Chouri, E., Rossato, M., Beretta, L., Tieland, R. G., Wichers, C. G.K., Stigter, E., Gulersonmez, C., Bonte-Mineur, F., Berkers, C. R., Radstake, T. R.D.J., and Marut, W.
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- 2020
4. Longitudinal analysis of T-cell receptor repertoires reveals persistence of antigen-driven CD4+ and CD8+ T-cell clusters in systemic sclerosis
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Servaas, N.H., primary, Zaaraoui-Boutahar, F., additional, Wichers, C.G.K., additional, Ottria, A., additional, Chouri, E., additional, Affandi, A.J., additional, Silva-Cardoso, S., additional, van der Kroef, M., additional, Carvalheiro, T., additional, van Wijk, F., additional, Radstake, T.R.D.J., additional, Andeweg, A.C., additional, and Pandit, A., additional
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- 2021
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5. Longitudinal analysis of T-cell receptor repertoires reveals persistence of antigen-driven CD4+ and CD8+ T-cell clusters in Systemic Sclerosis
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Servaas, N.H., primary, Zaaraoui-Boutahar, F., additional, Wichers, C.G.K., additional, Ottria, A., additional, Chouri, E., additional, Affandi, A.J., additional, Silva-Cardoso, S., additional, van der Kroef, M., additional, Carvalheiro, T., additional, van Wijk, F., additional, Radstake, T.R.D.J., additional, Andeweg, A.C., additional, and Pandit, A., additional
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- 2020
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6. Fatty Acid and Carnitine Metabolism Are Dysregulated in Systemic Sclerosis Patients
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Ottria, A., primary, Hoekstra, A. T., additional, Zimmermann, M., additional, van der Kroef, M., additional, Vazirpanah, N., additional, Cossu, M., additional, Chouri, E., additional, Rossato, M., additional, Beretta, L., additional, Tieland, R. G., additional, Wichers, C. G. K., additional, Stigter, E., additional, Gulersonmez, C., additional, Bonte-Mineur, F., additional, Berkers, C. R., additional, Radstake, T. R. D. J., additional, and Marut, W., additional
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- 2020
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7. Closing in on the role of microRNAs and plasmacytoid dendritic cells in the pathogenesis of systemic sclerosis and primary Sjogren’s syndrome
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Chouri, E, Radstake, Timothy, Rossato, M, van Roon, Joel A.G., and University Utrecht
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integumentary system ,plasmacytoid dendritic cells ,systemic sclerosis ,miRNome ,hemic and immune systems ,autoimmune diseases ,primary Sjogren's syndrome ,skin and connective tissue diseases ,transcriptome ,microRNAs - Abstract
Systemic sclerosis (SSc) and primary Sjogren’s syndrome (pSS) are autoimmune diseases for which no effective therapy is currently available. Even though these diseases have different clinical manifestations, they share several immunopathological features. The activation of innate and adaptive immunity is evident in both SSc and pSS and they are characterized by type I interferon (IFN) signature. Plasmacytoid dendritic cells (pDCs), which are the main producers of IFN, are decreased in circulation in both autoimmune diseases, whereas they are increased in affected tissues. To this end, we investigated the molecular alterations at the transcriptomic level present in pDCs of SSc patients. Additionally, this thesis aimed to investigate the role of microRNAs as epigenetic key regulators of gene expression in pDCs and circulation of SSc and pSS. This thesis pinpointed altered molecular signature (transcriptome and miRNome) in pDCs of SSc patients, identifying several pathways to be dysregulated. We further showed IGF2 to be increased in pDCs of SSc, a gene known to be regulated by its intronic microRNA, miR-483-5p. Here, we demonstrated that miR-483-5p was increased in serum of SSc patients already at early SSc stages and possibly associated with fibrosis. Furthermore, this work demonstrated miRNA dysregulation in pDCs of pSS, showing miR-29a and miR-29c to be decreased, linked to apoptosis and likely associated with pDC survival in patients. Overall, this thesis proposed that the function of miRNAs and pDCs is impaired in SSc and pSS. These results shed light on novel potential mechanisms causing disease indicating possible targets for therapeutic intervention.
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- 2019
8. Histone modifications underlie monocyte dysregulation in patients with systemic sclerosis, underlining the treatment potential of epigenetic targeting
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Van Der Kroef, M., Castellucci, M., Mokry, M., Cossu, M., Garonzi, M., Bossini-Castillo, L., Chouri, E., Wichers, C.G.K., Beretta, L., Trombetta, E., Silva-Cardoso, S., Vazirpanah, N., Carvalheiro, T., Angiolilli, C., Bekker, C.P.J., Affandi, A.J., Reedquist, K.A., Bonte-Mineur, F., Zirkzee, E.J.M., Bazzoni, F., Radstake, T.R.D.J., and Rossato, M.
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0301 basic medicine ,Male ,systemic sclerosis ,Biochemistry ,Epigenesis, Genetic ,Histones ,0302 clinical medicine ,epigenetic targeting ,Medicine ,Immunology and Allergy ,histone modification ,Molecular Targeted Therapy ,biology ,Monocyte homeostasis ,Azepines ,Middle Aged ,Chromatin ,Histone Code ,Histone ,STAT1 Transcription Factor ,Female ,monocytes ,Adult ,Immunology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Rheumatology ,Humans ,Epigenetics ,Aged ,030203 arthritis & rheumatology ,Scleroderma, Systemic ,epigenetics ,business.industry ,Biochemistry, Genetics and Molecular Biology(all) ,Gene Expression Profiling ,Interferon-alpha ,Promoter ,STAT2 Transcription Factor ,Triazoles ,Chromatin Assembly and Disassembly ,Bromodomain ,030104 developmental biology ,Gene Expression Regulation ,Case-Control Studies ,Cancer research ,biology.protein ,H3K4me3 ,business ,Chromatin immunoprecipitation ,Genetics and Molecular Biology(all) - Abstract
Background and objectiveSystemic sclerosis (SSc) is a severe autoimmune disease, in which the pathogenesis is dependent on both genetic and epigenetic factors. Altered gene expression in SSc monocytes, particularly of interferon (IFN)-responsive genes, suggests their involvement in SSc development. We investigated the correlation between epigenetic histone marks and gene expression in SSc monocytes.MethodsChromatin immunoprecipitation followed by sequencing (ChIPseq) for histone marks H3K4me3 and H3K27ac was performed on monocytes of nine healthy controls and 14 patients with SSc. RNA sequencing was performed in parallel to identify aberrantly expressed genes and their correlation with the levels of H3K4me3 and H3K27ac located nearby their transcription start sites. ChIP-qPCR assays were used to verify the role of bromodomain proteins, H3K27ac and STATs on IFN-responsive gene expression.Results1046 and 534 genomic loci showed aberrant H3K4me3 and H3K27ac marks, respectively, in SSc monocytes. The expression of 381 genes was directly and significantly proportional to the levels of such chromatin marks present near their transcription start site. Genes correlated to altered histone marks were enriched for immune, IFN and antiviral pathways and presented with recurrent binding sites for IRF and STAT transcription factors at their promoters. IFNα induced the binding of STAT1 and STAT2 at the promoter of two of these genes, while blocking acetylation readers using the bromodomain BET family inhibitor JQ1 suppressed their expression.ConclusionSSc monocytes have altered chromatin marks correlating with their IFN signature. Enzymes modulating these reversible marks may provide interesting therapeutic targets to restore monocyte homeostasis to treat or even prevent SSc.
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- 2019
9. Low RUNX3 expression alters dendritic cell function in patients with systemic sclerosis and contributes to enhanced fibrosis
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Affandi, A.J., Carvalheiro, T., Ottria, A., Broen, J.C., Bossini-Castillo, L., Tieland, R.G., Bon, L. van, Chouri, E., Rossato, M., Mertens, J.S., Garcia, S., Pandit, A., Kroon, L.M. de, Christmann, R.B., Martin, J., Roon, J.A.G. van, Radstake, T.R.D.J., Marut, W., Affandi, A.J., Carvalheiro, T., Ottria, A., Broen, J.C., Bossini-Castillo, L., Tieland, R.G., Bon, L. van, Chouri, E., Rossato, M., Mertens, J.S., Garcia, S., Pandit, A., Kroon, L.M. de, Christmann, R.B., Martin, J., Roon, J.A.G. van, Radstake, T.R.D.J., and Marut, W.
- Abstract
Item does not contain fulltext, OBJECTIVES: Systemic sclerosis (SSc) is an autoimmune disease with unknown pathogenesis manifested by inflammation, vasculopathy and fibrosis in skin and internal organs. Type I interferon signature found in SSc propelled us to study plasmacytoid dendritic cells (pDCs) in this disease. We aimed to identify candidate pathways underlying pDC aberrancies in SSc and to validate its function on pDC biology. METHODS: In total, 1193 patients with SSc were compared with 1387 healthy donors and 8 patients with localised scleroderma. PCR-based transcription factor profiling and methylation status analyses, single nucleotide polymorphism genotyping by sequencing and flow cytometry analysis were performed in pDCs isolated from the circulation of healthy controls or patients with SSc. pDCs were also cultured under hypoxia, inhibitors of methylation and hypoxia-inducible factors and runt-related transcription factor 3 (RUNX3) levels were determined. To study Runx3 function, Itgax-Cre:Runx3 (f/f) mice were used in in vitro functional assay and bleomycin-induced SSc skin inflammation and fibrosis model. RESULTS: Here, we show downregulation of transcription factor RUNX3 in SSc pDCs. A higher methylation status of the RUNX3 gene, which is associated with polymorphism rs6672420, correlates with lower RUNX3 expression and SSc susceptibility. Hypoxia is another factor that decreases RUNX3 level in pDC. Mouse pDCs deficient of Runx3 show enhanced maturation markers on CpG stimulation. In vivo, deletion of Runx3 in dendritic cell leads to spontaneous induction of skin fibrosis in untreated mice and increased severity of bleomycin-induced skin fibrosis. CONCLUSIONS: We show at least two pathways potentially causing low RUNX3 level in SSc pDCs, and we demonstrate the detrimental effect of loss of Runx3 in SSc model further underscoring the role of pDCs in this disease.
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- 2019
10. Closing in on the role of microRNAs and plasmacytoid dendritic cells in the pathogenesis of systemic sclerosis and primary Sjogren’s syndrome
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Radstake, Timothy, Rossato, M, van Roon, Joel A.G., Chouri, E, Radstake, Timothy, Rossato, M, van Roon, Joel A.G., and Chouri, E
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- 2019
11. Closing in on the role of microRNAs and plasmacytoid dendritic cells in the pathogenesis of systemic sclerosis and primary Sjogren’s syndrome
- Author
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Other research (not in main researchprogram), Translationele immunologie, Radstake, Timothy, Rossato, M, van Roon, JAG, Chouri, E, Other research (not in main researchprogram), Translationele immunologie, Radstake, Timothy, Rossato, M, van Roon, JAG, and Chouri, E
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- 2019
12. AB0149 Decreased microrna-130a expression drives activation of classical dendritic cells from patients with primary sjögren’s syndrome
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Lopes, A.P., primary, van Roon, J.A., additional, Blokland, S.L., additional, Wang, M., additional, Chouri, E., additional, Kruize, A.A., additional, Burgering, B.M., additional, Rossato, M., additional, Radstake, T.R., additional, and Hillen, M.R., additional
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- 2018
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13. Association of MicroRNA-618 Expression With Altered Frequency and Activation of Plasmacytoid Dendritic Cells in Patients With Systemic Sclerosis
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Rossato, M., Affandi, A.J., Thordardottir, S., Wichers, C.G.K., Cossu, M., Broen, J.C., Moret, F.M., Bossini-Castillo, L., Chouri, E., Bon, L. van, Wolters, F., Marut, W., Kroef, M. van der, Silva-Cardoso, S., Bekker, C.P.J., Dolstra, H., Laar, J.M. van, Martin, J., Roon, J.A.G. van, Reedquist, K.A., Beretta, L., Radstake, T.R., Rossato, M., Affandi, A.J., Thordardottir, S., Wichers, C.G.K., Cossu, M., Broen, J.C., Moret, F.M., Bossini-Castillo, L., Chouri, E., Bon, L. van, Wolters, F., Marut, W., Kroef, M. van der, Silva-Cardoso, S., Bekker, C.P.J., Dolstra, H., Laar, J.M. van, Martin, J., Roon, J.A.G. van, Reedquist, K.A., Beretta, L., and Radstake, T.R.
- Abstract
Contains fulltext : 177298.pdf (publisher's version ) (Closed access), OBJECTIVE: Plasmacytoid dendritic cells (PDCs) are a critical source of type I interferons (IFNs) that can contribute to the onset and maintenance of autoimmunity. Molecular mechanisms leading to PDC dysregulation and a persistent type I IFN signature are largely unexplored, especially in patients with systemic sclerosis (SSc), a disease in which PDCs infiltrate fibrotic skin lesions and produce higher levels of IFNalpha than those in healthy controls. This study was undertaken to investigate potential microRNA (miRNA)-mediated epigenetic mechanisms underlying PDC dysregulation and type I IFN production in SSc. METHODS: We performed miRNA expression profiling and validation in highly purified PDCs obtained from the peripheral blood of 3 independent cohorts of healthy controls and SSc patients. Possible functions of miRNA-618 (miR-618) on PDC biology were identified by overexpression in healthy PDCs. RESULTS: Expression of miR-618 was up-regulated in PDCs from SSc patients, including those with early disease who did not present with skin fibrosis. IFN regulatory factor 8, a crucial transcription factor for PDC development and activation, was identified as a target of miR-618. Overexpression of miR-618 reduced the development of PDCs from CD34+ cells in vitro and enhanced their ability to secrete IFNalpha, mimicking the PDC phenotype observed in SSc patients. CONCLUSION: Up-regulation of miR-618 suppresses the development of PDCs and increases their ability to secrete IFNalpha, potentially contributing to the type I IFN signature observed in SSc patients. Considering the importance of PDCs in the pathogenesis of SSc and other diseases characterized by a type I IFN signature, miR-618 potentially represents an important epigenetic target to regulate immune system homeostasis in these conditions.
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- 2017
14. Association of MicroRNA-618 Expression With Altered Frequency and Activation of Plasmacytoid Dendritic Cells in Patients With Systemic Sclerosis
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Reumafonds, European Commission, Netherlands Organization for Scientific Research, European Research Council, Rossato, M, Affandi, A.J., Thordardottir, S, Wichers, CGK, Cossu, M., Broen, Jasper C., Moret, FM, Bossini-Castillo, L., Chouri, E., van Bon, L, Wolters, F, Marut, W., van der Kroef, M, Silva-Cardoso, S, Bekker, C.P.J., Dolstra, H, van Laar, JM, Martín, J., van Roon, JAG, Reedquist, KA, Beretta, L., Radstake, T. R., Reumafonds, European Commission, Netherlands Organization for Scientific Research, European Research Council, Rossato, M, Affandi, A.J., Thordardottir, S, Wichers, CGK, Cossu, M., Broen, Jasper C., Moret, FM, Bossini-Castillo, L., Chouri, E., van Bon, L, Wolters, F, Marut, W., van der Kroef, M, Silva-Cardoso, S, Bekker, C.P.J., Dolstra, H, van Laar, JM, Martín, J., van Roon, JAG, Reedquist, KA, Beretta, L., and Radstake, T. R.
- Abstract
Objective. Plasmacytoid dendritic cells (PDCs) are a critical source of type I interferons (IFNs) that can contribute to the onset and maintenance of autoimmunity. Molecular mechanisms leading to PDC dysregulation and a persistent type I IFN signature are largely unexplored, especially in patients with systemic sclerosis (SSc), a disease in which PDCs infiltrate fibrotic skin lesions and produce higher levels of IFN alpha than those in healthy controls. This study was undertaken to investigate potential microRNA (miRNA)-mediated epigenetic mechanisms underlying PDC dysregulation and type I IFN production in SSc. Methods. We performed miRNA expression profiling and validation in highly purified PDCs obtained from the peripheral blood of 3 independent cohorts of healthy controls and SSc patients. Possible functions of miRNA-618 (miR-618) on PDC biology were identified by overexpression in healthy PDCs. Results. Expression of miR-618 was up-regulated in PDCs from SSc patients, including those with early disease who did not present with skin fibrosis. IFN regulatory factor 8, a crucial transcription factor for PDC development and activation, was identified as a target of miR-618. Overexpression of miR-618 reduced the development of PDCs from CD34+ cells in vitro and enhanced their ability to secrete IFN alpha, mimicking the PDC phenotype observed in SSc patients. Conclusion. Up-regulation of miR-618 suppresses the development of PDCs and increases their ability to secrete IFN alpha, potentially contributing to the type I IFN signature observed in SSc patients. Considering the importance of PDCs in the pathogenesis of SSc and other diseases characterized by a type I IFN signature, miR-618 potentially represents an important epigenetic target to regulate immune system homeostasis in these conditions.
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- 2017
15. AB0121 Dysregulated circulating mirna levels are characteristic of both non sjÖgren's sicca and primary sjÖgren's syndrome patients
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Lopes, AP, primary, Hillen, MR, additional, Chouri, E, additional, Blokland, SL, additional, Kruize, AA, additional, Rossato, M, additional, Radstake, TR, additional, and Roon, JA van, additional
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- 2017
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16. THU0268 Decreased Expression of MIR-130A and MIR-708 in Type-1 Classical Dendritic Cells of Sjögren's Syndrome Patients Indicates Their Dysregulation
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Hillen, M.R., primary, Blokland, S.L., additional, Chouri, E., additional, Lopes, A.P., additional, Kruize, A.A., additional, Hack, C.E., additional, Rossato, M., additional, Radstake, T.R., additional, and van Roon, J.A., additional
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- 2016
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17. THU0269 A Multitude of Downregulated miRNAs in Plasmacytoid Dcs of Sjögren's Syndrome Patients Indicates Numerous Dysregulated Signalling Pathways
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Hillen, M.R., primary, Chouri, E., additional, Blokland, S.L., additional, Kruize, A.A., additional, Lafeber, F.P., additional, Rossato, M., additional, van Roon, J.A., additional, and Radstake, T.R., additional
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- 2016
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18. Unraveling IFN-I response dynamics and TNF crosstalk in the pathophysiology of systemic lupus erythematosus.
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Van Eyndhoven LC, Chouri E, Matos CI, Pandit A, Radstake TRDJ, Broen JCA, Singh A, and Tel J
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- Humans, Tumor Necrosis Factor-alpha, Signal Transduction, Interferon Type I, Lupus Erythematosus, Systemic, Autoimmune Diseases
- Abstract
Introduction: The innate immune system serves the crucial first line of defense against a wide variety of potential threats, during which the production of pro-inflammatory cytokines IFN-I and TNFα are key. This astonishing power to fight invaders, however, comes at the cost of risking IFN-I-related pathologies, such as observed during autoimmune diseases, during which IFN-I and TNFα response dynamics are dysregulated. Therefore, these response dynamics must be tightly regulated, and precisely matched with the potential threat. This regulation is currently far from understood., Methods: Using droplet-based microfluidics and ODE modeling, we studied the fundamentals of single-cell decision-making upon TLR signaling in human primary immune cells (n = 23). Next, using biologicals used for treating autoimmune diseases [i.e., anti-TNFα, and JAK inhibitors], we unraveled the crosstalk between IFN-I and TNFα signaling dynamics. Finally, we studied primary immune cells isolated from SLE patients (n = 8) to provide insights into SLE pathophysiology., Results: single-cell IFN-I and TNFα response dynamics display remarkable differences, yet both being highly heterogeneous. Blocking TNFα signaling increases the percentage of IFN-I-producing cells, while blocking IFN-I signaling decreases the percentage of TNFα-producing cells. Single-cell decision-making in SLE patients is dysregulated, pointing towards a dysregulated crosstalk between IFN-I and TNFα response dynamics., Discussion: We provide a solid droplet-based microfluidic platform to study inherent immune secretory behaviors, substantiated by ODE modeling, which can challenge the conceptualization within and between different immune signaling systems. These insights will build towards an improved fundamental understanding on single-cell decision-making in health and disease., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Van Eyndhoven, Chouri, Matos, Pandit, Radstake, Broen, Singh and Tel.)
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- 2024
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19. Nuclear Receptor Subfamily 4A Signaling as a Key Disease Pathway of CD1c+ Dendritic Cell Dysregulation in Systemic Sclerosis.
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Servaas NH, Hiddingh S, Chouri E, Wichers CGK, Affandi AJ, Ottria A, Bekker CPJ, Cossu M, Silva-Cardoso SC, van der Kroef M, Hinrichs AC, Carvalheiro T, Vazirpanah N, Beretta L, Rossato M, Bonte-Mineur F, Radstake TRDJ, Kuiper JJW, Boes M, and Pandit A
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- Humans, Gene Expression Regulation, Gene Expression, Fibrosis, Glycoproteins metabolism, Antigens, CD1 genetics, Nuclear Receptor Subfamily 4, Group A, Member 2 genetics, Nuclear Receptor Subfamily 4, Group A, Member 2 metabolism, Scleroderma, Systemic genetics
- Abstract
Objective: This study was undertaken to identify key disease pathways driving conventional dendritic cell (cDC) alterations in systemic sclerosis (SSc)., Methods: Transcriptomic profiling was performed on peripheral blood CD1c+ cDCs (cDC2s) isolated from 12 healthy donors and 48 patients with SSc, including all major disease subtypes. We performed differential expression analysis for the different SSc subtypes and healthy donors to uncover genes dysregulated in SSc. To identify biologically relevant pathways, we built a gene coexpression network using weighted gene correlation network analysis. We validated the role of key transcriptional regulators using chromatin immunoprecipitation (ChIP) sequencing and in vitro functional assays., Results: We identified 17 modules of coexpressed genes in cDCs that correlated with SSc subtypes and key clinical traits, including autoantibodies, skin score, and occurrence of interstitial lung disease. A module of immunoregulatory genes was markedly down-regulated in patients with the diffuse SSc subtype characterized by severe fibrosis. Transcriptional regulatory network analysis performed on this module predicted nuclear receptor 4A (NR4A) subfamily genes (NR4A1, NR4A2, NR4A3) as the key transcriptional regulators of inflammation. Indeed, ChIP-sequencing analysis indicated that these NR4A members target numerous differentially expressed genes in SSc cDC2s. Inclusion of NR4A receptor agonists in culture-based experiments provided functional proof that dysregulation of NR4As affects cytokine production by cDC2s and modulates downstream T cell activation., Conclusion: NR4A1, NR4A2, and NR4A3 are important regulators of immunosuppressive and fibrosis-associated pathways in SSc cDCs. Thus, the NR4A family represents novel potential targets to restore cDC homeostasis in SSc., (© 2022 The Authors. Arthritis & Rheumatology published by Wiley Periodicals LLC on behalf of American College of Rheumatology.)
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- 2023
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20. Hypoxia and TLR9 activation drive CXCL4 production in systemic sclerosis plasmacytoid dendritic cells via mtROS and HIF-2α.
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Ottria A, Zimmermann M, Paardekooper LM, Carvalheiro T, Vazirpanah N, Silva-Cardoso S, Affandi AJ, Chouri E, V D Kroef M, Tieland RG, Bekker CPJ, Wichers CGK, Rossato M, Mocholi-Gimeno E, Tekstra J, Ton E, van Laar JM, Cossu M, Beretta L, Garcia Perez S, Pandit A, Bonte-Mineur F, Reedquist KA, van den Bogaart G, Radstake TRDJ, and Marut W
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- Basic Helix-Loop-Helix Transcription Factors metabolism, Dendritic Cells metabolism, Humans, Hypoxia metabolism, Hypoxia-Inducible Factor 1, alpha Subunit, Platelet Factor 4 metabolism, Reactive Oxygen Species metabolism, Scleroderma, Systemic, Toll-Like Receptor 9
- Abstract
Objective: SSc is a complex disease characterized by vascular abnormalities and inflammation culminating in hypoxia and excessive fibrosis. Previously, we identified chemokine (C-X-C motif) ligand 4 (CXCL4) as a novel predictive biomarker in SSc. Although CXCL4 is well-studied, the mechanisms driving its production are unclear. The aim of this study was to elucidate the mechanisms leading to CXCL4 production., Methods: Plasmacytoid dendritic cells (pDCs) from 97 healthy controls and 70 SSc patients were cultured in the presence of hypoxia or atmospheric oxygen level and/or stimulated with several toll-like receptor (TLR) agonists. Further, pro-inflammatory cytokine production, CXCL4, hypoxia-inducible factor (HIF) -1α and HIF-2α gene and protein expression were assessed using ELISA, Luminex, qPCR, FACS and western blot assays., Results: CXCL4 release was potentiated only when pDCs were simultaneously exposed to hypoxia and TLR9 agonist (P < 0.0001). Here, we demonstrated that CXCL4 production is dependent on the overproduction of mitochondrial reactive oxygen species (mtROS) (P = 0.0079) leading to stabilization of HIF-2α (P = 0.029). In addition, we show that hypoxia is fundamental for CXCL4 production by umbilical cord CD34 derived pDCs., Conclusion: TLR-mediated activation of immune cells in the presence of hypoxia underpins the pathogenic production of CXCL4 in SSc. Blocking either mtROS or HIF-2α pathways may therapeutically attenuate the contribution of CXCL4 to SSc and other inflammatory diseases driven by CXCL4., (© The Author(s) 2021. Published by Oxford University Press on behalf of the British Society for Rheumatology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
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- 2022
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21. Phenotypical Diversification of Early IFNα-Producing Human Plasmacytoid Dendritic Cells Using Droplet-Based Microfluidics.
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Van Eyndhoven LC, Chouri E, Subedi N, and Tel J
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- Humans, Phenotype, Cytotoxicity, Immunologic immunology, Dendritic Cells immunology, Dendritic Cells metabolism, Interferon-alpha biosynthesis, Microfluidic Analytical Techniques methods
- Abstract
Plasmacytoid dendritic cells (pDCs) are a rare type of highly versatile immune cells that besides their specialized function of massive type I interferon (IFN-I) production are able to exert cytotoxic effector functions. However, diversification upon toll like receptor (TLR)-induced activation leads to highly heterogeneous responses that have not been fully characterized yet. Using droplet-based microfluidics, we showed that upon TLR7/8 and TLR9-induced single-cell activation only 1-3% secretes IFNα, and only small fractions upregulate cytotoxicity markers. Interestingly, this 1-3% of early IFN-producing pDCs, also known as first responders, express high levels of programmed death-ligand 1 (PD-L1) and TNF-related apoptosis-inducing ligand (TRAIL), which makes these hybrid cells similar to earlier described IFN-I producing killer pDCs (IKpDCs). IFN-I priming increases the numbers of IFNα producing cells up to 40%, but does not significantly upregulate the cytotoxicity markers. Besides, these so-called second responders do not show a cytotoxic phenotype as potent as observed for the first responders. Overall, our results indicate that the first responders are the key drivers orchestrating population wide IFN-I responses and possess high cytotoxic potential., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Van Eyndhoven, Chouri, Subedi and Tel.)
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- 2021
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22. Longitudinal analysis of T-cell receptor repertoires reveals persistence of antigen-driven CD4 + and CD8 + T-cell clusters in systemic sclerosis.
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Servaas NH, Zaaraoui-Boutahar F, Wichers CGK, Ottria A, Chouri E, Affandi AJ, Silva-Cardoso S, van der Kroef M, Carvalheiro T, van Wijk F, Radstake TRDJ, Andeweg AC, and Pandit A
- Subjects
- Adult, Antigens immunology, Disease Susceptibility, Epitopes, Female, Gene Frequency, High-Throughput Nucleotide Sequencing, Humans, Immunologic Memory, Immunophenotyping, Longitudinal Studies, Lymphocyte Activation, Male, Middle Aged, Receptors, Antigen, T-Cell metabolism, Receptors, Antigen, T-Cell, alpha-beta genetics, Receptors, Antigen, T-Cell, alpha-beta metabolism, Scleroderma, Systemic pathology, CD4-Positive T-Lymphocytes immunology, CD4-Positive T-Lymphocytes metabolism, CD8-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes metabolism, Receptors, Antigen, T-Cell genetics, Scleroderma, Systemic etiology, Scleroderma, Systemic metabolism
- Abstract
The T-cell receptor (TCR) is a highly polymorphic surface receptor that allows T-cells to recognize antigenic peptides presented on the major histocompatibility complex (MHC). Changes in the TCR repertoire have been observed in several autoimmune conditions, and these changes are suggested to predispose autoimmunity. Multiple lines of evidence have implied an important role for T-cells in the pathogenesis of Systemic Sclerosis (SSc), a complex autoimmune disease. One of the major questions regarding the roles of T-cells is whether expansion and activation of T-cells observed in the diseases pathogenesis is antigen driven. To investigate the temporal TCR repertoire dynamics in SSc, we performed high-throughput sequencing of CD4
+ and CD8+ TCRβ chains on longitudinal samples obtained from four SSc patients collected over a minimum of two years. Repertoire overlap analysis revealed that samples taken from the same individual over time shared a high number of TCRβ sequences, indicating a clear temporal persistence of the TCRβ repertoire in CD4+ as well as CD8+ T-cells. Moreover, the TCRβs that were found with a high frequency at one time point were also found with a high frequency at the other time points (even after almost four years), showing that frequencies of dominant TCRβs are largely consistent over time. We also show that TCRβ generation probability and observed TCR frequency are not related in SSc samples, showing that clonal expansion and persistence of TCRβs is caused by antigenic selection rather than convergent recombination. Moreover, we demonstrate that TCRβ diversity is lower in CD4+ and CD8+ T-cells from SSc patients compared with memory T-cells from healthy individuals, as SSc TCRβ repertoires are largely dominated by clonally expanded persistent TCRβ sequences. Lastly, using "Grouping of Lymphocyte Interactions by Paratope Hotspots" (GLIPH2), we identify clusters of TCRβ sequences with homologous sequences that potentially recognize the same antigens and contain TCRβs that are persist in SSc patients. In conclusion, our results show that CD4+ and CD8+ T-cells are highly persistent in SSc patients over time, and this persistence is likely a result from antigenic selection. Moreover, persistent TCRs form high similarity clusters with other (non-)persistent sequences that potentially recognize the same epitopes. These data provide evidence for an antigen driven expansion of CD4+ /CD8+ T-cells in SSc., (Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2021
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23. Implication of miR-126 and miR-139-5p in Plasmacytoid Dendritic Cell Dysregulation in Systemic Sclerosis.
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Chouri E, Wang M, Hillen MR, Angiolilli C, Silva-Cardoso SC, Wichers CGK, van der Kroef M, Bekker CPJ, Cossu M, van Bon L, Affandi AJ, Carvalheiro T, Pandit A, van Roon JAG, Beretta L, Burgering BMT, Radstake TRDJ, and Rossato M
- Abstract
Compelling evidence shows the involvement of plasmacytoid dendritic cells (pDCs) in systemic sclerosis (SSc) pathogenesis. This study investigated whether microRNAs (miRNAs) are involved in the dysregulation of pDCs in SSc patients already at early stages. RNA from circulating pDCs was isolated from two independent cohorts of SSc patients with different disease phenotypes, and individuals with Raynaud's phenomenon, for microRNA profiling and RNA-sequencing analysis. Proteomic analysis was exploited to identify novel direct miRNA targets at the protein level. Twelve and fifteen miRNAs were differentially expressed in at least one group of patients compared to healthy controls in discovery cohort I and II, respectively. Of note, miR-126 and miR-139-5p were upregulated in both preclinical and definite SSc patients and correlated with the expression of type I interferon (IFN)-responsive genes. Toll-like receptor 9 (TLR9) stimulation of healthy pDCs upregulated the expression of both miRNAs, similarly to what was observed in patients. The proteomic analysis identified USP24 as a novel target of miR-139-5p. The expression level of USP24 was inversely correlated with miR-139-5p expression in SSc patients and induced by TLR9 stimulation in healthy pDCs. These findings demonstrated that the miRNA profile is altered in pDCs of SSc patients already at early stages of the disease and indicate their potential contribution to pDC activation observed in patients.
- Published
- 2021
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24. CXCL4 triggers monocytes and macrophages to produce PDGF-BB, culminating in fibroblast activation: Implications for systemic sclerosis.
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van der Kroef M, Carvalheiro T, Rossato M, de Wit F, Cossu M, Chouri E, Wichers CGK, Bekker CPJ, Beretta L, Vazirpanah N, Trombetta E, Radstake TRDJ, and Angiolilli C
- Subjects
- Adult, Aged, Benzimidazoles pharmacology, Cells, Cultured, Cytokines metabolism, Female, Humans, Male, Middle Aged, Piperidines pharmacology, Receptors, Platelet-Derived Growth Factor antagonists & inhibitors, Becaplermin metabolism, Fibroblasts immunology, Inflammation immunology, Macrophages immunology, Monocytes immunology, Platelet Factor 4 metabolism, Scleroderma, Systemic immunology
- Abstract
Objective: To analyze how monocyte and macrophage exposure to CXCL4 induces inflammatory and fibrotic processes observed in Systemic sclerosis (SSc) patients., Methods: In six independent experiments, monocytes of healthy controls (HC) and SSc patients were stimulated with CXCL4, TLR-ligands, IFNɑ or TGFβ and the secretion of cytokines in the supernatant was assessed by multiplex immunoassays. PDGF-BB production by monocyte-derived macrophages was quantified using immunoassays. The number of monocytes and PDGF-BB in circulation was quantified in HC and SSc patients with the Sysmex XT-1800i haematology counter and immunoassays. Intracellular PDGF-BB was quantified in monocytes by Western blot. PDGF-receptor inhibition was achieved using siRNA-mediated knockdown or treatment with Crenolanib. The production of inflammatory mediators and extracellular matrix (ECM) components by dermal fibroblasts was analyzed by qPCR, ELISA and ECM deposition assays., Results: SSc and HC monocytes released PDGF-BB upon stimulation with CXCL4. Conversely, TLR ligands, IFNɑ or TGFβ did not induce PDGF-bb release. PDGF-BB plasma levels were significantly (P = 0.009) higher in diffuse SSc patients (n = 19), compared with HC (n = 21). In healthy dermal fibroblasts, PDGF-BB enhanced TNFɑ-induced expression of inflammatory cytokines and increased ECM production. Comparable results were observed in fibroblasts cultured in supernatant taken from macrophages stimulated with CXCL4. This effect was almost completely abrogated by inhibition of the PDGF-receptor using Crenolanib., Conclusion: Our findings demonstrate that CXCL4 can drive fibroblast activation indirectly via PDGF-BB production by myeloid cells. Hence, targeting PDGF-BB or CXCL4-induced PDGF-BB release could be clinically beneficial for patients with SSc., Competing Interests: Declarations of competing interest None., (Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2020
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25. Cytometry by time of flight identifies distinct signatures in patients with systemic sclerosis, systemic lupus erythematosus and Sjögrens syndrome.
- Author
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van der Kroef M, van den Hoogen LL, Mertens JS, Blokland SLM, Haskett S, Devaprasad A, Carvalheiro T, Chouri E, Vazirpanah N, Cossu M, Wichers CGK, Silva-Cardoso SC, Affandi AJ, Bekker CPJ, Lopes AP, Hillen MR, Bonte-Mineur F, Kok MR, Beretta L, Rossato M, Mingueneau M, van Roon JAG, and Radstake TRDJ
- Subjects
- Adult, Aged, Female, Humans, Lupus Erythematosus, Systemic diagnosis, Male, Middle Aged, Phenotype, Scleroderma, Systemic diagnosis, Sjogren's Syndrome diagnosis, Flow Cytometry methods, Lupus Erythematosus, Systemic immunology, Scleroderma, Systemic immunology, Sjogren's Syndrome immunology
- Abstract
Systemic sclerosis (SSc), systemic lupus erythematosus (SLE) and primary Sjögrens syndrome (pSS) are clinically distinct systemic autoimmune diseases (SADs) that share molecular pathways. We quantified the frequency of circulating immune-cells in 169 patients with these SADs and 44 healty controls (HC) using mass-cytometry and assessed the diagnostic value of these results. Alterations in the frequency of immune-cell subsets were present in all SADs compared to HC. Most alterations, including a decrease of CD56
hi NK-cells in SSc and IgM+ Bcells in pSS, were disease specific; only a reduced frequency of plasmacytoid dendritic cells was common between all SADs Strikingly, hierarchical clustering of SSc patients identified 4 clusters associated with different clinical phenotypes, and 9 of the 12 cell subset-alterations in SSc were also present during the preclinical-phase of the disease. Additionally, we found a strong association between the use of prednisone and alterations in B-cell subsets. Although differences in immune-cell frequencies between these SADs are apparent, the discriminative value thereof is too low for diagnostic purposes. Within each disease, mass cytometry analyses revealed distinct patterns between endophenotypes. Given the lack of tools enabling early diagnosis of SSc, our results justify further research into the value of cellular phenotyping as a diagnostic aid., (© 2019 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2020
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26. Dysregulated miRNome of plasmacytoid dendritic cells from patients with Sjögren's syndrome is associated with processes at the centre of their function.
- Author
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Hillen MR, Chouri E, Wang M, Blokland SLM, Hartgring SAY, Concepcion AN, Kruize AA, Burgering BMT, Rossato M, van Roon JAG, and Radstake TRDJ
- Subjects
- Adult, Aged, Cells, Cultured, Dendritic Cells pathology, Down-Regulation, Female, Humans, Male, MicroRNAs biosynthesis, Middle Aged, Proteomics methods, RNA genetics, Signal Transduction, Sjogren's Syndrome metabolism, Sjogren's Syndrome pathology, Dendritic Cells metabolism, Gene Expression Regulation, MicroRNAs genetics, Sjogren's Syndrome genetics
- Abstract
Objective: A considerable body of evidence supports a role for type-I IFN in the pathogenesis of primary SS (pSS). As plasmacytoid dendritic cells (pDCs) are a major source of type-I IFN, we investigated their molecular regulation by measuring expression of a large set of miRNAs., Methods: pDCs were isolated from peripheral blood of pSS patients (n = 30) and healthy controls (n = 16) divided into two independent cohorts (discovery and replication). Screening of 758 miRNAs was assessed by an OpenArray quantitative PCR-based technique; replication of a set of identified miRNAs was performed by custom array. Functional annotation of miRNA targets was performed using pathway enrichment. Novel targets of miR-29a and miR-29c were identified using a proteomic approach (stable isotope labelling with amino acids in cell culture)., Results: In the discovery cohort, 20 miRNAs were differentially expressed in pSS pDCs compared with healthy control pDCs. Of these, differential expression of 10 miRNAs was confirmed in the replication cohort. The dysregulated miRNAs were involved in phosphoinositide 3-kinase-Ak strain transforming and mammalian target of rapamycin signalling, as well as regulation of cell death. In addition, a set of novel protein targets of miR-29a and miR-29c were identified, including five targets that were regulated by both miRs., Conclusion: The dysregulated miRNome in pDCs of patients with pSS is associated with aberrant regulation of processes at the centre of pDC function, including type-I IFN production and cell death. As miR-29a and miR-29c are pro-apoptotic factors and several of the novel targets identified here are regulators of apoptosis, their downregulation in patients with pSS is associated with enhanced pDC survival., (© The Author(s) 2019. Published by Oxford University Press on behalf of the British Society for Rheumatology.)
- Published
- 2019
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27. Low RUNX3 expression alters dendritic cell function in patients with systemic sclerosis and contributes to enhanced fibrosis.
- Author
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Affandi AJ, Carvalheiro T, Ottria A, Broen JC, Bossini-Castillo L, Tieland RG, Bon LV, Chouri E, Rossato M, Mertens JS, Garcia S, Pandit A, de Kroon LM, Christmann RB, Martin J, van Roon JA, Radstake TR, and Marut W
- Subjects
- Animals, Core Binding Factor Alpha 3 Subunit biosynthesis, Dendritic Cells pathology, Disease Models, Animal, Disease Progression, Fibroblasts metabolism, Fibroblasts pathology, Fibrosis genetics, Fibrosis metabolism, Fibrosis pathology, Humans, Mice, Scleroderma, Systemic metabolism, Scleroderma, Systemic pathology, Skin metabolism, Core Binding Factor Alpha 3 Subunit genetics, Dendritic Cells metabolism, Gene Expression Regulation, RNA genetics, Scleroderma, Systemic genetics, Skin pathology
- Abstract
Objectives: Systemic sclerosis (SSc) is an autoimmune disease with unknown pathogenesis manifested by inflammation, vasculopathy and fibrosis in skin and internal organs. Type I interferon signature found in SSc propelled us to study plasmacytoid dendritic cells (pDCs) in this disease. We aimed to identify candidate pathways underlying pDC aberrancies in SSc and to validate its function on pDC biology., Methods: In total, 1193 patients with SSc were compared with 1387 healthy donors and 8 patients with localised scleroderma. PCR-based transcription factor profiling and methylation status analyses, single nucleotide polymorphism genotyping by sequencing and flow cytometry analysis were performed in pDCs isolated from the circulation of healthy controls or patients with SSc. pDCs were also cultured under hypoxia, inhibitors of methylation and hypoxia-inducible factors and runt-related transcription factor 3 (RUNX3) levels were determined. To study Runx3 function, Itgax -Cre: Runx3
f/f mice were used in in vitro functional assay and bleomycin-induced SSc skin inflammation and fibrosis model., Results: Here, we show downregulation of transcription factor RUNX3 in SSc pDCs. A higher methylation status of the RUNX3 gene, which is associated with polymorphism rs6672420, correlates with lower RUNX3 expression and SSc susceptibility. Hypoxia is another factor that decreases RUNX3 level in pDC. Mouse pDCs deficient of Runx3 show enhanced maturation markers on CpG stimulation. In vivo, deletion of Runx3 in dendritic cell leads to spontaneous induction of skin fibrosis in untreated mice and increased severity of bleomycin-induced skin fibrosis., Conclusions: We show at least two pathways potentially causing low RUNX3 level in SSc pDCs, and we demonstrate the detrimental effect of loss of Runx3 in SSc model further underscoring the role of pDCs in this disease., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2019. No commercial re-use. See rights and permissions. Published by BMJ.)- Published
- 2019
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28. MicroRNA-130a Contributes to Type-2 Classical DC-activation in Sjögren's Syndrome by Targeting Mitogen- and Stress-Activated Protein Kinase-1.
- Author
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Lopes AP, van Roon JAG, Blokland SLM, Wang M, Chouri E, Hartgring SAY, van der Wurff-Jacobs KMG, Kruize AA, Burgering BMT, Rossato M, Radstake TRDJ, and Hillen MR
- Subjects
- Adult, Aged, Female, HEK293 Cells, Humans, Male, Middle Aged, Cytokines immunology, Dendritic Cells immunology, Dendritic Cells pathology, MicroRNAs immunology, Ribosomal Protein S6 Kinases, 90-kDa immunology, Sjogren's Syndrome immunology, Sjogren's Syndrome pathology
- Abstract
Objectives: Considering the critical role of microRNAs (miRNAs) in regulation of cell activation, we investigated their role in circulating type-2 conventional dendritic cells (cDC2s) of patients with primary Sjögren's syndrome (pSS) compared to healthy controls (HC). Methods: CD1c-expressing cDC2s were isolated from peripheral blood. A discovery cohort (15 pSS, 6 HC) was used to screen the expression of 758 miRNAs and a replication cohort (15 pSS, 11 HC) was used to confirm differential expression of 18 identified targets. Novel targets for two replicated miRNAs were identified by SILAC in HEK-293T cells and validated in primary cDC2s. Differences in cytokine production between pSS and HC cDC2s were evaluated by intracellular flow-cytometry. cDC2s were cultured in the presence of MSK1-inhibitors to investigate their effect on cytokine production. Results: Expression of miR-130a and miR-708 was significantly decreased in cDC2s from pSS patients compared to HC in both cohorts, and both miRNAs were downregulated upon stimulation via endosomal TLRs. Upstream mediator of cytokine production MSK1 was identified as a novel target of miR-130a and overexpression of miR-130a reduced MSK1 expression in cDC2s. pSS cDC2s showed higher MSK1 expression and an increased fraction of IL-12 and TNF-α-producing cells. MSK1-inhibition reduced cDC2 activation and production of IL-12, TNF-α, and IL-6. Conclusions: The decreased expression of miR-130a and miR-708 in pSS cDC2s seems to reflect cell activation. miR-130a targets MSK1, which regulates pro-inflammatory cytokine production, and we provide proof-of-concept for MSK1-inhibition as a therapeutic avenue to impede cDC2 activity in pSS.
- Published
- 2019
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29. Histone modifications underlie monocyte dysregulation in patients with systemic sclerosis, underlining the treatment potential of epigenetic targeting.
- Author
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van der Kroef M, Castellucci M, Mokry M, Cossu M, Garonzi M, Bossini-Castillo LM, Chouri E, Wichers CGK, Beretta L, Trombetta E, Silva-Cardoso S, Vazirpanah N, Carvalheiro T, Angiolilli C, Bekker CPJ, Affandi AJ, Reedquist KA, Bonte-Mineur F, Zirkzee EJM, Bazzoni F, Radstake TRDJ, and Rossato M
- Subjects
- Adult, Aged, Azepines pharmacology, Case-Control Studies, Chromatin Assembly and Disassembly genetics, Chromatin Assembly and Disassembly immunology, Female, Gene Expression Profiling methods, Gene Expression Regulation drug effects, Gene Expression Regulation genetics, Gene Expression Regulation immunology, Histones genetics, Humans, Interferon-alpha immunology, Male, Middle Aged, Molecular Targeted Therapy methods, STAT1 Transcription Factor metabolism, STAT2 Transcription Factor metabolism, Scleroderma, Systemic immunology, Triazoles pharmacology, Epigenesis, Genetic, Histone Code genetics, Monocytes immunology, Scleroderma, Systemic genetics
- Abstract
Background and Objective: Systemic sclerosis (SSc) is a severe autoimmune disease, in which the pathogenesis is dependent on both genetic and epigenetic factors. Altered gene expression in SSc monocytes, particularly of interferon (IFN)-responsive genes, suggests their involvement in SSc development. We investigated the correlation between epigenetic histone marks and gene expression in SSc monocytes., Methods: Chromatin immunoprecipitation followed by sequencing (ChIPseq) for histone marks H3K4me3 and H3K27ac was performed on monocytes of nine healthy controls and 14 patients with SSc. RNA sequencing was performed in parallel to identify aberrantly expressed genes and their correlation with the levels of H3K4me3 and H3K27ac located nearby their transcription start sites. ChIP-qPCR assays were used to verify the role of bromodomain proteins, H3K27ac and STATs on IFN-responsive gene expression., Results: 1046 and 534 genomic loci showed aberrant H3K4me3 and H3K27ac marks, respectively, in SSc monocytes. The expression of 381 genes was directly and significantly proportional to the levels of such chromatin marks present near their transcription start site. Genes correlated to altered histone marks were enriched for immune, IFN and antiviral pathways and presented with recurrent binding sites for IRF and STAT transcription factors at their promoters. IFNα induced the binding of STAT1 and STAT2 at the promoter of two of these genes, while blocking acetylation readers using the bromodomain BET family inhibitor JQ1 suppressed their expression., Conclusion: SSc monocytes have altered chromatin marks correlating with their IFN signature. Enzymes modulating these reversible marks may provide interesting therapeutic targets to restore monocyte homeostasis to treat or even prevent SSc., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2019. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2019
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30. New insights into the genetics and epigenetics of systemic sclerosis.
- Author
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Angiolilli C, Marut W, van der Kroef M, Chouri E, Reedquist KA, and Radstake TRDJ
- Subjects
- DNA Methylation, Disease Progression, Genetic Association Studies, Humans, Protein Processing, Post-Translational, RNA, Untranslated genetics, Epigenesis, Genetic, Genetic Predisposition to Disease genetics, Scleroderma, Systemic genetics
- Abstract
Systemic sclerosis (SSc) is a severe autoimmune disease that is characterized by vascular abnormalities, immunological alterations and fibrosis of the skin and internal organs. The results of genetic studies in patients with SSc have revealed statistically significant genetic associations with disease manifestations and progression. Nevertheless, genetic susceptibility to SSc is moderate, and the functional consequences of genetic associations remain only partially characterized. A current hypothesis is that, in genetically susceptible individuals, epigenetic modifications constitute the driving force for disease initiation. As epigenetic alterations can occur years before fibrosis appears, these changes could represent a potential link between inflammation and tissue fibrosis. Epigenetics is a fast-growing discipline, and a considerable number of important epigenetic studies in SSc have been published in the past few years that span histone post-translational modifications, DNA methylation, microRNAs and long non-coding RNAs. This Review describes the latest insights into genetic and epigenetic contributions to the pathogenesis of SSc and aims to provide an improved understanding of the molecular pathways that link inflammation and fibrosis. This knowledge will be of paramount importance for the development of medicines that are effective in treating or even reversing tissue fibrosis.
- Published
- 2018
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31. Serum microRNA screening and functional studies reveal miR-483-5p as a potential driver of fibrosis in systemic sclerosis.
- Author
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Chouri E, Servaas NH, Bekker CPJ, Affandi AJ, Cossu M, Hillen MR, Angiolilli C, Mertens JS, van den Hoogen LL, Silva-Cardoso S, van der Kroef M, Vazirpanah N, Wichers CGK, Carvalheiro T, Blokland SLM, Giovannone B, Porretti L, Marut W, Vigone B, van Roon JAG, Beretta L, Rossato M, and Radstake TRDJ
- Subjects
- Adult, Aged, Cohort Studies, Female, Fibrosis, Genetic Testing, Humans, Male, Middle Aged, Up-Regulation, Endothelial Cells physiology, Fibroblasts physiology, MicroRNAs genetics, Scleroderma, Systemic genetics, Skin pathology
- Abstract
Objective: MicroRNAs (miRNAs) are regulatory molecules, which have been addressed as potential biomarkers and therapeutic targets in rheumatic diseases. Here, we investigated the miRNA signature in the serum of systemic sclerosis (SSc) patients and we further assessed their expression in early stages of the disease., Methods: The levels of 758 miRNAs were evaluated in the serum of 26 SSc patients as compared to 9 healthy controls by using an Openarray platform. Three miRNAs were examined in an additional cohort of 107 SSc patients and 24 healthy donors by single qPCR. MiR-483-5p expression was further analysed in the serum of patients with localized scleroderma (LoS) (n = 22), systemic lupus erythematosus (SLE) (n = 33) and primary Sjögren's syndrome (pSS) (n = 23). The function of miR-483-5p was examined by transfecting miR-483-5p into primary human dermal fibroblasts and pulmonary endothelial cells., Results: 30 miRNAs were significantly increased in patients with SSc. Of these, miR-483-5p showed reproducibly higher levels in an independent SSc cohort and was also elevated in patients with preclinical-SSc symptoms (early SSc). Notably, miR-483-5p was not differentially expressed in patients with SLE or pSS, whereas it was up-regulated in LoS, indicating that this miRNA could be involved in the development of skin fibrosis. Consistently, miR-483-5p overexpression in fibroblasts and endothelial cells modulated the expression of fibrosis-related genes., Conclusions: Our findings showed that miR-483-5p is up-regulated in the serum of SSc patients, from the early stages of the disease onwards, and indicated its potential function as a fine regulator of fibrosis in SSc., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2018
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32. Circulating small non-coding RNAs reflect IFN status and B cell hyperactivity in patients with primary Sjögren's syndrome.
- Author
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Lopes AP, Hillen MR, Chouri E, Blokland SLM, Bekker CPJ, Kruize AA, Rossato M, van Roon JAG, and Radstake TRDJ
- Subjects
- Adult, Aged, Autoantibodies blood, Female, Humans, Immunoglobulin G blood, Male, Middle Aged, Sjogren's Syndrome immunology, Young Adult, B-Lymphocytes immunology, Interferons blood, RNA, Small Untranslated blood, Sjogren's Syndrome blood
- Abstract
Background: Considering the important role of miRNAs in the regulation of post-transcriptional expression of target genes, we investigated circulating small non-coding RNAs (snc)RNA levels in patients with primary Sjögren's syndrome (pSS). In addition we assessed if serum sncRNA levels can be used to differentiate patients with specific disease features., Methods: Serum RNA was isolated from 37 pSS patients as well as 21 patients with incomplete Sjögren's Syndrome (iSS) and 17 healthy controls (HC) allocated to two independent cohorts: discovery and validation. OpenArray profiling of 758 sncRNAs was performed in the discovery cohort. Selected sncRNAs were measured in the validation cohort using single-assay RT-qPCR. In addition, unsupervised hierarchical clustering was performed within the pSS group., Results: Ten sncRNAs were differentially expressed between the groups in the array. In the validation cohort, we confirmed the increased expression of U6-snRNA and miR-661 in the iSS group as compared to HC. We were unable to validate differential expression of any miRNAs in the pSS group. However, within this group several miRNAs correlated with laboratory parameters. Unsupervised clustering distinguished three clusters of pSS patients. Patients in one cluster showed significantly higher serum IgG, prevalence of anti-SSB autoantibodies, IFN-score, and decreased leukocyte counts compared to the two other clusters., Conclusion: We were unable to identify any serum sncRNAs with differential expression in pSS patients. However, we show that circulating miRNA levels are associated with disease parameters in pSS patients and can be used to distinguish pSS patients with more severe B cell hyperactivity. As several of these miRNAs are implicated in the regulation of B cells, they may play a role in the perpetuation of the disease.
- Published
- 2018
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33. Effects of partial dietary supplementation of fish meal with soymeal on the stress and apoptosis response in the digestive system of common dentex ( Dentex dentex ).
- Author
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Antonopoulou E, Chouri E, Feidantsis K, Lazou A, and Chatzifotis S
- Abstract
Background: Soybean is a common alternative protein source of plant origin in aquafeeds as it has a reasonably balanced amino acid profile and is widely available. This study aimed to investigate the influence of partial substitution of fish meal with soy meal on cytoprotective pathways and apoptosis in the digestive system of common dentex ( Dentex dentex ), using the activation of Hsp70, p38 MAPK, Bcl-2 and caspase-3. The experimental approach involved feeding of common dentex with three isoprotein and isoenergetic diets that contained fish meal as a protein source (FM), partial replacement of fish meal by soy meal 25% (SM25) and 40% (SM40) for 3 months., Results: The SM40 diet induced Hsp70 activation only in the middle part of intestine. On the other hand, both SM25 and SM40 diets diminished the phosphorylation of p38 MAPK in the anterior and the middle part of intestine, whereas only SM25 induced p38 MAPK phosphorylation in the stomach. Moreover, a decrease in the levels of caspase-3 activity was observed in the middle and posterior intestine, as well as in the stomach after feeding with SM25 diets. Furthermore, Bcl-2 levels were increased by SM40 in the anterior and by SM25 in the middle part of intestine., Conclusions: SM25 and SM40 diets elicited a tissue and soy concentration specific cellular and cell protective response in the different parts of the digestive tract in common dentex.
- Published
- 2017
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34. Association of MicroRNA-618 Expression With Altered Frequency and Activation of Plasmacytoid Dendritic Cells in Patients With Systemic Sclerosis.
- Author
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Rossato M, Affandi AJ, Thordardottir S, Wichers CGK, Cossu M, Broen JCA, Moret FM, Bossini-Castillo L, Chouri E, van Bon L, Wolters F, Marut W, van der Kroef M, Silva-Cardoso S, Bekker CPJ, Dolstra H, van Laar JM, Martin J, van Roon JAG, Reedquist KA, Beretta L, and Radstake TRDJ
- Subjects
- Adult, Antigens, CD34 metabolism, Case-Control Studies, Female, Humans, Interferon-alpha metabolism, Male, Middle Aged, Scleroderma, Systemic blood, Up-Regulation, Dendritic Cells metabolism, Epigenesis, Genetic, MicroRNAs blood, Scleroderma, Systemic genetics
- Abstract
Objective: Plasmacytoid dendritic cells (PDCs) are a critical source of type I interferons (IFNs) that can contribute to the onset and maintenance of autoimmunity. Molecular mechanisms leading to PDC dysregulation and a persistent type I IFN signature are largely unexplored, especially in patients with systemic sclerosis (SSc), a disease in which PDCs infiltrate fibrotic skin lesions and produce higher levels of IFNα than those in healthy controls. This study was undertaken to investigate potential microRNA (miRNA)-mediated epigenetic mechanisms underlying PDC dysregulation and type I IFN production in SSc., Methods: We performed miRNA expression profiling and validation in highly purified PDCs obtained from the peripheral blood of 3 independent cohorts of healthy controls and SSc patients. Possible functions of miRNA-618 (miR-618) on PDC biology were identified by overexpression in healthy PDCs., Results: Expression of miR-618 was up-regulated in PDCs from SSc patients, including those with early disease who did not present with skin fibrosis. IFN regulatory factor 8, a crucial transcription factor for PDC development and activation, was identified as a target of miR-618. Overexpression of miR-618 reduced the development of PDCs from CD34+ cells in vitro and enhanced their ability to secrete IFNα, mimicking the PDC phenotype observed in SSc patients., Conclusion: Up-regulation of miR-618 suppresses the development of PDCs and increases their ability to secrete IFNα, potentially contributing to the type I IFN signature observed in SSc patients. Considering the importance of PDCs in the pathogenesis of SSc and other diseases characterized by a type I IFN signature, miR-618 potentially represents an important epigenetic target to regulate immune system homeostasis in these conditions., (© 2017, American College of Rheumatology.)
- Published
- 2017
- Full Text
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