32 results on '"Chloé Bourguignon"'
Search Results
2. CRISPR/Cas9-mediated gene knockout and interallelic gene conversion in human induced pluripotent stem cells using non-integrative bacteriophage-chimeric retrovirus-like particles
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Joffrey Mianné, Amel Nasri, Chloé Nguyen Van, Chloé Bourguignon, Mathieu Fieldès, Engi Ahmed, Christine Duthoit, Nicolas Martin, Hugues Parrinello, Anaïs Louis, Alexandra Iché, Régis Gayon, Florine Samain, Lucille Lamouroux, Pascale Bouillé, Arnaud Bourdin, Said Assou, and John De Vos
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hiPSC ,Transduction ,CRISPR ,Retrovirus-like particles ,Gene conversion ,Knock-out ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The application of CRISPR/Cas9 technology in human induced pluripotent stem cells (hiPSC) holds tremendous potential for basic research and cell-based gene therapy. However, the fulfillment of these promises relies on the capacity to efficiently deliver exogenous nucleic acids and harness the repair mechanisms induced by the nuclease activity in order to knock-out or repair targeted genes. Moreover, transient delivery should be preferred to avoid persistent nuclease activity and to decrease the risk of off-target events. We recently developed bacteriophage-chimeric retrovirus-like particles that exploit the properties of bacteriophage coat proteins to package exogenous RNA, and the benefits of lentiviral transduction to achieve highly efficient, non-integrative RNA delivery in human cells. Here, we investigated the potential of bacteriophage-chimeric retrovirus-like particles for the non-integrative delivery of RNA molecules in hiPSC for CRISPR/Cas9 applications. Results We found that these particles efficiently convey RNA molecules for transient expression in hiPSC, with minimal toxicity and without affecting the cell pluripotency and subsequent differentiation. We then used this system to transiently deliver in a single step the CRISPR-Cas9 components (Cas9 mRNA and sgRNA) to generate gene knockout with high indel rate (up to 85%) at multiple loci. Strikingly, when using an allele-specific sgRNA at a locus harboring compound heterozygous mutations, the targeted allele was not altered by NHEJ/MMEJ, but was repaired at high frequency using the homologous wild type allele, i.e., by interallelic gene conversion. Conclusions Our results highlight the potential of bacteriophage-chimeric retrovirus-like particles to efficiently and safely deliver RNA molecules in hiPSC, and describe for the first time genome engineering by gene conversion in hiPSC. Harnessing this DNA repair mechanism could facilitate the therapeutic correction of human genetic disorders in hiPSC.
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- 2022
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3. New erythrocyte parameters derived from the Coulter principle relate with red blood cell properties-A pilot study in diabetes mellitus.
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Chloé Bourguignon, Clémentine Ansel, Jean-Philippe Gineys, Sophie Schuldiner, Damien Isèbe, Michael Geitner, Pierre Taraconat, and Jean-Christophe Gris
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Medicine ,Science - Abstract
In routine hematological instruments, blood cells are counted and sized by monitoring the impedance signals induced during their passage through a Coulter orifice. However, only signals associated with centered paths in the aperture are considered for analysis, while the rejected measurements, caused by near-wall trajectories, can provide additional information on red blood cells (RBC), as recent publications suggest. To assess usefulness of two new parameters in describing alterations in RBC properties, we performed a pilot study to compare blood samples from patients with diabetes mellitus (DM), frequent pathological condition associated with impairment in RBC deformability, versus controls. A total of 345 blood samples were analyzed: 225 in the DM group and 120 in the control group. A diagram of [Formula: see text] and [Formula: see text], the two new parameters derived from the analysis of impedancemetry pulses, was used to compare distribution of RBC subpopulations between groups. To discriminate RBC from DM and control individuals, based on our multiparametric analysis, we built a score from variables derived from [Formula: see text] matrix which showed good performances: area under the receiving operating characteristic curve 0.948 (0.920-0.970), p
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- 2023
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4. The Risk of Thrombosis Around Pregnancy: Where Do We Stand?
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Jean-Christophe Gris, Florence Guillotin, Mathias Chéa, Chloé Bourguignon, and Sylvie Bouvier
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pregnancy ,puerperium ,thrombosis ,risk factor ,prophylaxis ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Pregnancy and puerperium increase the relative risk of venous thromboembolism (VTE) and the absolute risk remains low, around 1 per 1,000, with induced mortality of around 1 per 100,000. Analysis of large databases has helped specify the modes of presentation and risk factors (RF) whose impact is greater after than before childbirth, since VTE during pregnancy and post-partum obey different RFs. The evolution of the population concerned (mostly women over 35, obese, of multi-ethnicity undergoing medically assisted reproduction) affects the frequency of these RFs. Pulmonary embolism (PE) is over-represented after childbirth, but 30% of PE in pregnancy occurs without any RFs. Recommendations for prevention, mainly from expert groups, are heterogeneous and often discordant. Low molecular weight heparins (LMWH) are the mainstay of pharmacological thromboprophylaxis, in a field where randomized controlled studies are definitely lacking. VTE risk assessment in pregnancy must be systematic and repetitive. Risk assessment methods and scores are beginning to emerge to guide thromboprophylaxis and should be used more systematically. In the future, analyzing observational data from huge, nationwide registries and prospective cluster clinical trials may bring to light clinically relevant outcomes likely to feed comprehensive guidelines.
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- 2022
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5. Recurrent Genetic Abnormalities in Human Pluripotent Stem Cells: Definition and Routine Detection in Culture Supernatant by Targeted Droplet Digital PCR
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Said Assou, Nicolas Girault, Mathilde Plinet, Julien Bouckenheimer, Caroline Sansac, Marion Combe, Joffrey Mianné, Chloé Bourguignon, Mathieu Fieldes, Engi Ahmed, Thérèse Commes, Anthony Boureux, Jean-Marc Lemaître, and John De Vos
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Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Summary: Genomic integrity of human pluripotent stem cells (hPSCs) is essential for research and clinical applications. However, genetic abnormalities can accumulate during hPSC generation and routine culture and following gene editing. Their occurrence should be regularly monitored, but the current assays to assess hPSC genomic integrity are not fully suitable for such regular screening. To address this issue, we first carried out a large meta-analysis of all hPSC genetic abnormalities reported in more than 100 publications and identified 738 recurrent genetic abnormalities (i.e., overlapping abnormalities found in at least five distinct scientific publications). We then developed a test based on the droplet digital PCR technology that can potentially detect more than 90% of these hPSC recurrent genetic abnormalities in DNA extracted from culture supernatant samples. This test can be used to routinely screen genomic integrity in hPSCs. : In this article, De Vos and colleagues performed a comprehensive meta-analysis of genetic abnormalities detected in hPSC lines. They then used this information to devise a ddPCR test targeting the majority of recurrent abnormalities and show that this test can be applied to the cell culture supernatant. Finally, they illustrate the interest of this test for routine hPSC screening. Keywords: pluripotent stem cells, induced pluripotent stem cells, genetic abnormalities, pluripotency, chromosome instability, genetic integrity, quality control, cell-free DNA, ddPCR
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- 2020
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6. Thrombosis and paroxysmal nocturnal haemoglobinuria
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Jean-Christophe Gris, Mathias Chéa, Florence Guillotin, Mathieu Fortier, Chloé Bourguignon, Éric Mercier, and Sylvie Bouvier
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Paroxysmal nocturnal haemoglobinuria ,Thrombosis ,Haemostasis ,Haemolysis ,Complement ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Thrombosis is the most common, most feared complication of paroxysmal nocturnal haemoglobinuria (PNH), a striking example of the effect of uncontrolled complement activation and haemolysis on vascular biology and haemostasis. Uncontrolled complement activation and haemolysis may occur at any site and there is a higher incidence of thrombosis at atypical sites. The mechanisms are highly multifactorial and still not fully understood. Eculizumab (a complement C5 inhibitor) has been observed to reduce the number of thrombotic events and, consequently, it is thought that the signalling pathways that depend on the activation of complement C5 may be involved. Complement inhibition, initially using eculizumab together with anticoagulation, is thus the key to treating and preventing thrombosis. New proximal complement inhibitors targeting complement C3 have also shown promising results with further improvements in the clinical prognosis and quality of life of patients. Screening for PNH in patients with unexplained thrombosis must be systematically considered in well characterized cases.
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- 2021
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7. Antiphospholipid syndrome in pregnancy: Neuro-psychiatric aspects
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Jean-Christophe Gris, Florence Guillotin, Mathias Chéa, Mathieu Fortier, Chloé Bourguignon, Éric Mercier, and Sylvie Bouvier
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Antiphospholipid antibodies ,Pregnancy ,Placenta ,Neuropsychiatry ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Nonvascular neurological manifestations of antiphospholipid antibodies (aPLAbs) are emerging and, among these, several neuropsychiatric shymptoms. Psychiatric diseases are gradually being considered as organic illnesses of the brain. The role of blood-brain barrier regulation is under scrutiny, and increased permeability is thought to play a precipitating role. Neuropsychiatric manifestations in women with antiphospholipid syndrome (APS) are suspected of being secondary to direct binding and the effect of aPLAbs on neurons and glial cells once the permeability of the blood-brain barrier has been altered. Placental diseases, sometimes mediated by aPLAbs, are risk factors for schizophrenia in the offspring, and babies born from women with aPLAbs can develop learning disabilities and autism spectrum disorders. Women with APS more often develop mood disorders as time goes by, and diffusion tensor imaging has evidenced subtle changes in their white matter. More data are urgently needed and the therapeutic management remains to be properly planned.
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- 2021
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8. Generation of four severe early-onset chronic obstructive pulmonary disease (COPD) patient-derived induced pluripotent stem cell lines from peripheral blood mononuclear cells
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Engi Ahmed, Mathieu Fieldes, Joffrey Mianné, Chloé Bourguignon, Amel Nasri, Isabelle Vachier, Said Assou, Arnaud Bourdin, and John De Vos
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Biology (General) ,QH301-705.5 - Abstract
Evidence highlights the concept of multiple trajectories leading to COPD. Early-life events (i.e., in utero lung development) may influence the maximally attained lung function and increase the risk to develop COPD. Human pluripotent stem cells (hiPSC) represent a unique opportunity to model lung development. We generated hiPSC lines from four highly characterized COPD patients with early onset and severe phenotype. Peripheral blood mononuclear cells (PBMCs) were reprogrammed using integration-free Sendai Virus. The cell lines had normal karyotype, expressed pluripotency hallmarks, and differentiated into the three primary germ layers.These lines offer a tool to study early-life origins of COPD.
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- 2021
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9. Differentiation of Human Induced Pluripotent Stem Cells from Patients with Severe COPD into Functional Airway Epithelium
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Engi Ahmed, Mathieu Fieldes, Chloé Bourguignon, Joffrey Mianné, Aurélie Petit, Myriam Jory, Chantal Cazevieille, Hassan Boukhaddaoui, James P. Garnett, Christophe Hirtz, Gladys Massiera, Isabelle Vachier, Said Assou, Arnaud Bourdin, and John De Vos
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airway epithelium ,chronic obstructive pulmonary disease ,disease modeling ,human induced pluripotent stem cells ,Cytology ,QH573-671 - Abstract
Background: Chronic Obstructive Pulmonary Disease (COPD), a major cause of mortality and disability, is a complex disease with heterogeneous and ill-understood biological mechanisms. Human induced pluripotent stem cells (hiPSCs) are a promising tool to model human disease, including the impact of genetic susceptibility. Methods: We developed a simple and reliable method for reprogramming peripheral blood mononuclear cells into hiPSCs and to differentiate them into air–liquid interface bronchial epithelium within 45 days. Importantly, this method does not involve any cell sorting step. We reprogrammed blood cells from one healthy control and three patients with very severe COPD. Results: The mean cell purity at the definitive endoderm and ventral anterior foregut endoderm (vAFE) stages was >80%, assessed by quantifying C-X-C Motif Chemokine Receptor 4/SRY-Box Transcription Factor 17 (CXCR4/SOX17) and NK2 Homeobox 1 (NKX2.1) expression, respectively. vAFE cells from all four hiPSC lines differentiated into bronchial epithelium in air–liquid interface conditions, with large zones covered by beating ciliated, basal, goblets, club cells and neuroendocrine cells, as found in vivo. The hiPSC-derived airway epithelium (iALI) from patients with very severe COPD and from the healthy control were undistinguishable. Conclusions: iALI bronchial epithelium is ready for better understanding lung disease pathogenesis and accelerating drug discovery.
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- 2022
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10. Targeted therapy in eosinophilic chronic obstructive pulmonary disease
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Mathieu Fieldes, Chloé Bourguignon, Said Assou, Amel Nasri, Aurélie Fort, Isabelle Vachier, John De Vos, Engi Ahmed, and Arnaud Bourdin
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Medicine - Abstract
Chronic obstructive pulmonary disease (COPD) is a common and preventable airway disease causing significant worldwide mortality and morbidity. Lifetime exposure to tobacco smoking and environmental particles are the two major risk factors. Over recent decades, COPD has become a growing public health problem with an increase in incidence. COPD is defined by airflow limitation due to airway inflammation and small airway remodelling coupled to parenchymal lung destruction. Most patients exhibit neutrophil-predominant airway inflammation combined with an increase in macrophages and CD8+ T-cells. Asthma is a heterogeneous chronic inflammatory airway disease. The most studied subtype is type 2 (T2) high eosinophilic asthma, for which there are an increasing number of biologic agents developed. However, both asthma and COPD are complex and share common pathophysiological mechanisms. They are known as overlapping syndromes as approximately 40% of patients with COPD present an eosinophilic airway inflammation. Several studies suggest a putative role of eosinophilia in lung function decline and COPD exacerbation. Recently, pharmacological agents targeting eosinophilic traits in uncontrolled eosinophilic asthma, especially monoclonal antibodies directed against interleukins (IL-5, IL-4, IL-13) or their receptors, have shown promising results. This review examines data on the rationale for such biological agents and assesses efficacy in T2-endotype COPD patients.
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- 2021
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11. Generation of the induced pluripotent stem cell line UHOMi002-A from peripheral blood mononuclear cells of a healthy male donor
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Mathieu Fieldes, Engi Ahmed, Chloé Bourguignon, Joffrey Mianné, Mélanie Martin, Cécile Arnould, Isabelle Vachier, Said Assou, John De Vos, and Arnaud Bourdin
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Biology (General) ,QH301-705.5 - Abstract
Human pluripotent stem cells (hiPSC) are highly valuable tools to model lung development and chronic bronchial diseases. We generated a hiPSC line from a highly characterized 40-year-old healthy male nonsmoking donor. Peripheral blood mononuclear cells (PBMCs) were reprogrammed using integration-free Sendai Virus. The cell line had normal karyotype, expressed pluripotency hallmarks, and differentiated into the three primary germ layers.The reported UHOMi002-A iPSC line may be used as a control to model lung development, study human chronic bronchial diseases and drug testing.
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- 2020
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12. Generation of the induced pluripotent stem cell line UHOMi001-A from a patient with mutations in CCDC40 gene causing Primary Ciliary Dyskinesia (PCD)
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Engi Ahmed, Caroline Sansac, Mathieu Fieldes, Anne Bergougnoux, Chloé Bourguignon, Joffrey Mianné, Cécile Arnould, Isabelle Vachier, Said Assou, Arnaud Bourdin, and John De Vos
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Biology (General) ,QH301-705.5 - Abstract
Primary Ciliary Dyskinesia (PCD) is a rare heterogeneous genetic disorder affecting motile cilia structure and function leading to lung disease. We generated induced pluripotent stem cells (iPSCs) from dermal fibroblasts of a female PCD patient carrying disease-causing variants in the CCDC40 gene. Reprogramming was performed with the human OSKM transcription factors using the Sendai-virus delivery system. The resulting transgene free iPSCs had normal karyotype, expressed pluripotency markers, could differentiate into the three germ layers in vivo and retained the disease-causing CCDC40 mutations. This iPSC line could be useful to model PCD disease and test gene therapy strategies.Resource TableUnlabelled TableUnique stem cell line identifierUHOMi001-AAlternative name(s) of stem cell lineiPCD02.30InstitutionInstitute for Regenerative Medicine & Biotherapy (IRMB), Montpellier, FRANCEContact information of distributorJohn De Vos john.devos@inserm.frType of cell lineiPSCOriginhumanAdditional origin infoAge: 34Sex: FemaleCell SourceDermal fibroblastsClonalityClonalMethod of reprogramminghOCT4, hSOX2, hC-MYC, hKLF4 (CytoTune™-iPS 2.0 Sendai Reprogramming Kit - Invitrogen, Thermo Fisher Scientific Inc.)Genetic ModificationYESType of ModificationSpontaneous mutationAssociated diseasePrimary Ciliary DyskinesiaGene/locusCompound Heterozygous mutations the Coiled-Coil Domain Containing 40 Gene (CCDC40): c.1116_1117delCT (Exon 7) and c.3180 + 1G > A (Intron 19)Method of modificationN/AName of transgene or resistanceN/AInducible/constitutive systemN/ADate archived/stock date2018-02-12Cell line repository/bankN/AEthical approvalThe study was approved by the regional scientific ethical committee (CPP Sud Med IV) under the number ID-RCB: 2013-A00892–43/CILIPS, Promoter University Hospital Of Montpellier) and informed consent was obtained from the patient.
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- 2018
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13. Pipeline for the Generation and Characterization of Transgenic Human Pluripotent Stem Cells Using the CRISPR/Cas9 Technology
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Joffrey Mianné, Chloé Bourguignon, Chloé Nguyen Van, Mathieu Fieldès, Amel Nasri, Said Assou, and John De Vos
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hPSC ,CRISPR ,screening ,stem cells ,gene editing ,gene targeting ,Cytology ,QH573-671 - Abstract
Recent advances in genome engineering based on the CRISPR/Cas9 technology have revolutionized our ability to manipulate genomic DNA. Its use in human pluripotent stem cells (hPSCs) has allowed a wide range of mutant cell lines to be obtained at an unprecedented rate. The combination of these two groundbreaking technologies has tremendous potential, from disease modeling to stem cell-based therapies. However, the generation, screening and molecular characterization of these cell lines remain a cumbersome and multi-step endeavor. Here, we propose a pipeline of strategies to efficiently generate, sub-clone, and characterize CRISPR/Cas9-edited hPSC lines in the function of the introduced mutation (indels, point mutations, insertion of large constructs, deletions).
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- 2020
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14. Combined oral contraceptive-associated venous thromboembolism revealing an antiphospholipid syndrome: International retrospective study of outcomes
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Jean-Christophe Gris, Chloé Bourguignon, Sylvie Bouvier, Éva Nouvellon, Jeremy Laurent, Antonia Perez-Martin, Ève Mousty, Mariya Gennadevna Nikolaeva, Jamilya Khizroeva, Victoria Bitsadze, and Alexander Makatsariya
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History ,Polymers and Plastics ,Aspirin ,Anticoagulants ,Venous Thromboembolism ,Hematology ,Antiphospholipid Syndrome ,Industrial and Manufacturing Engineering ,Contraceptives, Oral, Combined ,Risk Factors ,Antibodies, Antiphospholipid ,Humans ,Female ,Business and International Management ,Pulmonary Embolism ,Retrospective Studies - Abstract
Limitations in the data used to define thromboprophylaxis for patients with antiphospholipid antibodies (aPLAbs) and thrombosis include uncertainties after an initial provoked venous thromboembolic event (VTE). We aimed to study such cases associated with combined oral contraceptive (COC) intake.We retrospectively analysed thrombotic outcomes after a first COC-associated VTE and positive aPLAbs, with a low risk HERDOO2 score, on low-dose aspirin (LDA) secondary thromboprophylaxis, seen from 2010 to 2021 in 3 tertiary referral centres, one in France and 2 in Russia. Data from 264 patients (distal deep vein thrombosis DVT: 62.9 %), cumulating in 1327.7 patient-years of observation, were collected.There were 22 cases of thrombosis: 16 distal DVTs, 3 proximal, 1 pulmonary embolism (PE) and 2 transient ischemic attacks. Recurrence rate was 1.66 per 100 patient-years (p-y; 95 % CI: 0.96-2.33). No major bleeding occurred. Risk factors affecting recurrence-free survival were the time between first COC intake and VTE (p 0.0001; the shortest, the lower), proximal DVT (p = 0.021), active smoking (p = 0.039), an associated systemic disease (p = 0.043) and circulating monocyte counts (p = 0.001).We observed a low risk of recurrence which was modulated by classical risk factors for VTE. These observational data may provide clues for future randomized controlled trials.
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- 2022
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15. Direct blood fluorescence signal intensity of neutrophils (NEU-SFL): A marker of NETosis in preeclampsia?
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Florence Guillotin, Mathieu Fortier, Marie Portes, Christophe Demattei, Léa Cultrera, Maxime Loyens, Eve Mousty, Eva Nouvellon, Eric Mercier, Chloé Bourguignon, Mathias Chea, Vincent Letouzey, Jean-Christophe Gris, and Sylvie Bouvier
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Hematology - Published
- 2022
16. Pregnancy after Combined Oral Contraceptive-Associated Venous Thromboembolism: An International Retrospective Study of Outcomes
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Jean-Christophe Gris, Chloé Bourguignon, Sylvie Bouvier, Eva Nouvellon, Jeremy Laurent, Antonia Perez-Martin, Eve Mousty, Mariya Nikolaeva, Jamilya Khizroeva, Victoria Bitsadze, and Alexander Makatsariya
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Infant, Newborn ,Anticoagulants ,Thrombosis ,Hematology ,Venous Thromboembolism ,Heparin, Low-Molecular-Weight ,Contraceptives, Oral, Combined ,Pregnancy ,Recurrence ,Risk Factors ,Antibodies, Antiphospholipid ,Humans ,Thrombophilia ,Female ,Retrospective Studies - Abstract
Background Few data are available on thrombotic outcomes during pregnancy and puerperium occurring after an initial provoked venous thromboembolic (VTE) event. Objectives To describe thrombotic outcomes during pregnancy after a first combined oral contraceptive (COC)-associated VTE and the factors associated with recurrence. Methods This was an international multicentric retrospective study on patients referred for thrombophilia screening from January 1, 2010 to January 1, 2021 following a first COC-associated VTE, including women with neither inherited thrombophilia nor antiphospholipid antibodies and focusing on those who had a subsequent pregnancy under the same thromboprophylaxis treatment. Thrombotic recurrences during pregnancy and puerperium as well as risk factors for recurrence were analyzed. Results We included 2,145 pregnant women. A total of 88 thrombotic events, 58 antenatal and 29 postnatal, occurred, mostly during the first trimester of pregnancy and the first 2 weeks of puerperium. Incidence rates were 49.6 (37–62) per 1,000 patient-years during pregnancy and 118.7 (78–159) per 1,000 patient-years during puerperium. Focusing on pulmonary embolism, incidence rates were 1.68 (1–4) per 1,000 patient-years during pregnancy and 65.5 (35–97) per 1,000 patient-years during puerperium.Risk factors for antenatal recurrences were maternal hypercholesterolemia and birth of a very small-for-gestational-age neonate. A risk factor for postnatal recurrence was the incidence of preeclampsia. Conclusion Our multicentric retrospective data show significant rates of VTE recurrence during pregnancy and puerperium in women with a previous VTE event associated with COC, despite a unique low-molecular-weight heparin-based thromboprophylaxis. These results may provide benchmarks and valuable information for designing future randomized controlled trials.
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- 2022
17. Les organoïdes pulmonaires
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Isabelle Vachier, Joffrey Mianné, Engi Ahmed, Mathieu Fieldes, Said Assou, Charlotte Vernisse, Chloé Bourguignon, Aurélie Petit, Thierry Lavabre Bertrand, John De Vos, Arnaud Bourdin, MORNET, Dominique, Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Cellules Souches, Plasticité Cellulaire, Médecine Régénératrice et Immunothérapies (IRMB), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), Physiologie & médecine expérimentale du Cœur et des Muscles [U 1046] (PhyMedExp), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), and Centre Hospitalier Universitaire de Nîmes (CHU Nîmes)
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[SDV] Life Sciences [q-bio] ,0303 health sciences ,03 medical and health sciences ,0302 clinical medicine ,[SDV]Life Sciences [q-bio] ,General Medicine ,030217 neurology & neurosurgery ,General Biochemistry, Genetics and Molecular Biology ,030304 developmental biology - Abstract
L’impact en santé publique des pathologies respiratoires chroniques ne cesse de croître. Dans ce contexte, il paraît indispensable d’améliorer les modèles d’études du poumon afin de reproduire au plus proche l’architecture pulmonaire complexe, garante des fonctions d’oxygénation et d’épuration du gaz carbonique. Les connaissances actuelles en physiopathologie respiratoire résultent en partie des études de modèles de reconstitution d’épithélium bronchique in vitro à partir de cellules primaires, en deux dimensions sur des inserts, ou en trois dimensions, en organoïdes mimant jusqu’à l’arborescence pulmonaire. Le développement de ces modèles in vitro a connu un nouvel essor grâce aux organoïdes pulmonaires issus de cellules souches pluripotentes et la démocratisation des outils d’édition du génome. Ces apports technologiques récents offrent de nouvelles perspectives en matière de thérapeutiques ou de compréhension physiopathologique et pourraient, dans le futur, ouvrir les portes de la médecine régénératrice pulmonaire.
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- 2020
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18. [Modelling the bronchial epithelium in chronic obstructive pulmonary disease using human induced pluripotential stem cells]
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Mathieu Fieldes, Isabelle Vachier, Said Assou, Aurélie Fort, Engi Ahmed, J. De Vos, Charlotte Vernisse, Arnaud Bourdin, Chloé Bourguignon, Joffrey Mianné, MORNET, Dominique, Cellules Souches, Plasticité Cellulaire, Médecine Régénératrice et Immunothérapies (IRMB), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Physiologie & médecine expérimentale du Cœur et des Muscles [U 1046] (PhyMedExp), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Matériaux et Nanosciences Grand-Est (MNGE), Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Département pneumologie et addictologie [Montpellier], Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Hôpital Arnaud de Villeneuve, Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), and Université Louis Pasteur - Strasbourg I-Centre National de la Recherche Scientifique (CNRS)
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Pulmonary and Respiratory Medicine ,business.industry ,[SDV]Life Sciences [q-bio] ,Chronic obstructive pulmonary disease ,Bronchial epithelium ,Différenciation dirigée ,Épithélium bronchique ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,[SDV.MHEP.PSR]Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,Molecular biology ,respiratory tract diseases ,3. Good health ,03 medical and health sciences ,0302 clinical medicine ,Cellule souche pluripotente induite humaine ,030228 respiratory system ,Human induced pluripotential stem cells ,Directed differentiation ,Bronchopneumopathie chronique obstructive ,[SDV.BC.BC] Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,[SDV.MHEP.PSR] Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,Medicine ,030212 general & internal medicine ,business - Abstract
Chronic obstructive pulmonary disease (COPD) is a chronic lung disease leading to irreversible destruction of the terminal bronchioles. Although the precise patho-physiological mechanisms remain to be elucidated, the bronchial epithelium seems to play a pivotal role in the disease. Recent studies have highlighted a great heterogeneity among COPD patients, with various disease courses including, in about half the cases, an origin in childhood. Modelling of COPD is a major goal but currently available models are imperfect. Our work aims to create a new in vitro cellular model to study the pathology of the disease. The differentiation of human induced pluripotential stem cells (hiPSCs) in bronchial epithelium is a step towards a better understanding of the developmental origin and the identification of new therapeutic targets., La bronchopneumopathie chronique obstructive (BPCO) est une atteinte chronique des voies aériennes distales caractérisée par une destruction irréversible des bronchioles terminales. Bien que les mécanismes physiopathologiques demeurent incompris à ce jour, l’épithélium bronchique semble être le chef d’orchestre de la maladie. De récentes études ont montré l’existence de différentes trajectoires de la maladie incluant dans la moitié des cas une origine pédiatrique. La modélisation de la BPCO constitue donc un enjeu majeur mais les modèles actuels sont imparfaits. La différenciation des cellules souches pluripotentes induites humaines (hiPSC) en épithélium bronchique représente un nouvel outil pour étudier les racines pédiatriques de la maladie et identifier de nouvelles cibles thérapeutiques.
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- 2020
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19. Generation of four severe early-onset chronic obstructive pulmonary disease (COPD) patient-derived induced pluripotent stem cell lines from peripheral blood mononuclear cells
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Chloé Bourguignon, Arnaud Bourdin, Isabelle Vachier, Amel Nasri, Said Assou, John De Vos, Mathieu Fieldes, Joffrey Mianné, Engi Ahmed, Cellules Souches, Plasticité Cellulaire, Médecine Régénératrice et Immunothérapies (IRMB), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), Hôpital Arnaud de Villeneuve [CHRU Montpellier], Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Physiologie & médecine expérimentale du Cœur et des Muscles [U 1046] (PhyMedExp), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), MORNET, Dominique, Université de Montpellier (UM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), and Université de Montpellier (UM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
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QH301-705.5 ,[SDV]Life Sciences [q-bio] ,Induced Pluripotent Stem Cells ,Germ layer ,Peripheral blood mononuclear cell ,Sendai virus ,03 medical and health sciences ,Pulmonary Disease, Chronic Obstructive ,0302 clinical medicine ,medicine ,Humans ,Biology (General) ,Induced pluripotent stem cell ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,COPD ,Lung ,biology ,Cell Differentiation ,Cell Biology ,General Medicine ,medicine.disease ,biology.organism_classification ,Cellular Reprogramming ,3. Good health ,respiratory tract diseases ,[SDV] Life Sciences [q-bio] ,medicine.anatomical_structure ,Cell culture ,In utero ,Immunology ,Leukocytes, Mononuclear ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Evidence highlights the concept of multiple trajectories leading to COPD. Early-life events (i.e., in utero lung development) may influence the maximally attained lung function and increase the risk to develop COPD. Human pluripotent stem cells (hiPSC) represent a unique opportunity to model lung development. We generated hiPSC lines from four highly characterized COPD patients with early onset and severe phenotype. Peripheral blood mononuclear cells (PBMCs) were reprogrammed using integration-free Sendai Virus. The cell lines had normal karyotype, expressed pluripotency hallmarks, and differentiated into the three primary germ layers. These lines offer a tool to study early-life origins of COPD.
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- 2021
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20. Reference values of coagulation assays performed for thrombophilia screening after a first venous thrombosis and their intra-patient associations
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Jean-Christophe Gris, Éva Cochery-Nouvellon, Chloé Bourguignon, Éric Mercier, Sylvie Bouvier, Isabelle Quéré, Antonia Perez-Martin, Nicolas Molinari, and Éric Matzner-Lober
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Venous Thrombosis ,Reference Values ,Humans ,Thrombophilia ,Hematology ,Blood Coagulation Tests ,Retrospective Studies - Abstract
No reference values are currently available for coagulation assays performed for thrombophilia screening prescribed according to guidelines, after a first venous thromboembolic (VTE) event, and we have no idea of the intra-patient associations between results.We performed a retrospective study of consecutive prescriptions fulfilling guidelines in a French university hospital from 2010 to 2019 (n = 3842) from the Glims® laboratory information system. We collected results of 12 parameters: aPTT, PT, fibrinogen (Fg), one-stage clotting methods for factors VIII, IX, XI and II (FVIII, FIX, FXI, FII), antithrombin (using an amidolytic assay: AT), protein C and S (using clotting assays: PC and PS) and mixing tests of a lupus-anticoagulant sensitive aPTT and of DRVVT.We show the results of the 12 parameters from 3603 individual files with less than 6 missing values, then describe these distributions and correlations between results from 2930 files with no missing value. We give the frequency of results described as indicating a risk of first VTE or of VTE recurrence. We propose 2 quantitative scores linking the 12 parameters at the individual level and reflecting their degree of dispersion with respect to their mean, describe the values of these scores and their associations with thrombophilic results.These normal values should help laboratory workers to validate process results and to assess their degree of originality. Our 2 scores should help to determine the intra-patient plausibility of associations of results. The usefulness of these laboratory scores for predicting clinically-relevant outcomes deserves to be investigated.
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- 2021
21. Targeted therapy in eosinophilic chronic obstructive pulmonary disease
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Aurélie Fort, Engi Ahmed, Arnaud Bourdin, Said Assou, Amel Nasri, Isabelle Vachier, John De Vos, Mathieu Fieldes, Chloé Bourguignon, Cellules Souches, Plasticité Cellulaire, Médecine Régénératrice et Immunothérapies (IRMB), Université de Montpellier (UM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Physiologie & médecine expérimentale du Cœur et des Muscles [U 1046] (PhyMedExp), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), MORNET, Dominique, Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), Institut Desbrest de santé publique (IDESP), and Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)
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Pulmonary and Respiratory Medicine ,medicine.medical_treatment ,Review ,[SDV.MHEP.PSR]Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,Eosinophilic ,medicine ,Eosinophilia ,030212 general & internal medicine ,Asthma ,COPD ,Lung ,business.industry ,Incidence (epidemiology) ,[SDV.IMM.IMM]Life Sciences [q-bio]/Immunology/Immunotherapy ,respiratory system ,medicine.disease ,Pathophysiology ,3. Good health ,respiratory tract diseases ,medicine.anatomical_structure ,030228 respiratory system ,Immunology ,[SDV.MHEP.PSR] Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,Medicine ,[SDV.IMM.IMM] Life Sciences [q-bio]/Immunology/Immunotherapy ,medicine.symptom ,business - Abstract
Chronic obstructive pulmonary disease (COPD) is a common and preventable airway disease causing significant worldwide mortality and morbidity. Lifetime exposure to tobacco smoking and environmental particles are the two major risk factors. Over recent decades, COPD has become a growing public health problem with an increase in incidence. COPD is defined by airflow limitation due to airway inflammation and small airway remodelling coupled to parenchymal lung destruction. Most patients exhibit neutrophil-predominant airway inflammation combined with an increase in macrophages and CD8+ T-cells. Asthma is a heterogeneous chronic inflammatory airway disease. The most studied subtype is type 2 (T2) high eosinophilic asthma, for which there are an increasing number of biologic agents developed. However, both asthma and COPD are complex and share common pathophysiological mechanisms. They are known as overlapping syndromes as approximately 40% of patients with COPD present an eosinophilic airway inflammation. Several studies suggest a putative role of eosinophilia in lung function decline and COPD exacerbation. Recently, pharmacological agents targeting eosinophilic traits in uncontrolled eosinophilic asthma, especially monoclonal antibodies directed against interleukins (IL-5, IL-4, IL-13) or their receptors, have shown promising results. This review examines data on the rationale for such biological agents and assesses efficacy in T2-endotype COPD patients., Patients with severe COPD and eosinophilic inflammation experience uncontrolled symptoms despite optimal pharmaceutical treatment. The development of new biomarkers is needed for better phenotyping of patients to propose innovative targeted therapy. https://bit.ly/2KzWuNO
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- 2021
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22. Differentiation of human induced pluripotent stem cells into functional airway epithelium
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Said Assou, Aurélie Petit, Mathieu Fieldes, Engi Ahmed, Gladys Massiera, James P. Garnett, Joffrey Mianné, Chantal Cazevieille, Myriam Jory, Chloé Bourguignon, De Vos J, Arnaud Bourdin, Isabelle Vachier, Hassan Boukhaddaoui, and Charlotte Vernisse
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Lung ,medicine.anatomical_structure ,In vivo ,Cell ,medicine ,Respiratory epithelium ,Cell sorting ,Biology ,Induced pluripotent stem cell ,Reprogramming ,CXCR4 ,Cell biology - Abstract
RationaleHighly reproducible in vitro generation of human bronchial epithelium from pluripotent stem cells is an unmet key goal for drug screening to treat lung diseases. The possibility of using induced pluripotent stem cells (hiPSC) to model normal and diseased tissue in vitro from a simple blood sample will reshape drug discovery for chronic lung, monogenic and infectious diseases.MethodsWe devised a simple and reliable method that drives a blood sample reprogrammed into hiPSC subsequently differentiated within 45 days into air-liquid interface bronchial epithelium (iALI), through key developmental stages, definitive-endoderm (DE) and Ventralized-Anterior-Foregut-Endoderm (vAFE) cells.ResultsReprogramming blood cells from one healthy and 3 COPD patients, and from skin-derived fibroblasts obtained in one PCD patient, succeeded in 100% of samples using Sendai viruses. Mean cell purity at DE and vAFE stages was greater than 80%, assessed by expression of CXCR4 and NKX2.1, avoiding the need of cell sorting. When transferred to ALI conditions, vAFE cells reliably differentiated within 4 weeks into bronchial epithelium with large zones covered by beating ciliated, basal, goblets, club cells and neuroendocrine cells as found in vivo. Benchmarking all culture conditions including hiPSCs adaptation to single-cell passaging, cell density and differentiation induction timing allowed for consistently producing iALI bronchial epithelium from the five hiPSC lines.ConclusionsReliable reprogramming and differentiation of blood-derived hiPSCs into mature and functional iALI bronchial epithelium is ready for wider use and this will allow better understanding lung disease pathogenesis and accelerating the development of novel gene therapies and drug discovery.
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- 2020
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23. Pipeline for the Generation and Characterization of Transgenic Human Pluripotent Stem Cells Using the CRISPR/Cas9 Technology
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Chloé Bourguignon, John De Vos, Amel Nasri, Chloé Nguyen Van, Mathieu Fieldes, Joffrey Mianné, Said Assou, Cellules Souches, Plasticité Cellulaire, Médecine Régénératrice et Immunothérapies (IRMB), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), and Salvy-Córdoba, Nathalie
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Pluripotent Stem Cells ,MESH: CRISPR-Cas Systems ,MESH: Transgenes ,Review ,Computational biology ,Stem cells ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,[SDV.GEN] Life Sciences [q-bio]/Genetics ,Biology ,Gene editing ,MESH: Base Sequence ,MESH: CRISPR-Associated Protein 9 ,medicine.disease_cause ,Genome engineering ,MESH: INDEL Mutation ,HPSC ,INDEL Mutation ,Genome editing ,CRISPR-Associated Protein 9 ,medicine ,Humans ,CRISPR ,Gene Knock-In Techniques ,Transgenes ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,[SDV.BC] Life Sciences [q-bio]/Cellular Biology ,MESH: Gene Knock-In Techniques ,Mutation ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,MESH: Humans ,Base Sequence ,Cas9 ,Gene targeting ,General Medicine ,genomic DNA ,Disease modeling ,lcsh:Biology (General) ,Screening ,MESH: Pluripotent Stem Cells ,CRISPR-Cas Systems ,Stem cell - Abstract
International audience; Recent advances in genome engineering based on the CRISPR/Cas9 technology have revolutionized our ability to manipulate genomic DNA. Its use in human pluripotent stem cells (hPSCs) has allowed a wide range of mutant cell lines to be obtained at an unprecedented rate. The combination of these two groundbreaking technologies has tremendous potential, from disease modeling to stem cell-based therapies. However, the generation, screening and molecular characterization of these cell lines remain a cumbersome and multi-step endeavor. Here, we propose a pipeline of strategies to efficiently generate, sub-clone, and characterize CRISPR/Cas9-edited hPSC lines in the function of the introduced mutation (indels, point mutations, insertion of large constructs, deletions).
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- 2020
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24. Thrombosis and paroxysmal nocturnal haemoglobinuria
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Florence Guillotin, Chloé Bourguignon, Mathias Chea, Jean-Christophe Gris, Sylvie Bouvier, Mathieu Fortier, and Eric Mercier
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Complement component 5 ,Paroxysmal nocturnal haemoglobinuria ,business.industry ,Complement ,Haemolysis ,Thrombosis ,Hematology ,Eculizumab ,medicine.disease ,Complement system ,Complement (complexity) ,RC666-701 ,Immunology ,medicine ,Diseases of the circulatory (Cardiovascular) system ,Cardiology and Cardiovascular Medicine ,Complication ,business ,Haemostasis ,medicine.drug - Abstract
Thrombosis is the most common, most feared complication of paroxysmal nocturnal haemoglobinuria (PNH), a striking example of the effect of uncontrolled complement activation and haemolysis on vascular biology and haemostasis. Uncontrolled complement activation and haemolysis may occur at any site and there is a higher incidence of thrombosis at atypical sites. The mechanisms are highly multifactorial and still not fully understood. Eculizumab (a complement C5 inhibitor) has been observed to reduce the number of thrombotic events and, consequently, it is thought that the signalling pathways that depend on the activation of complement C5 may be involved. Complement inhibition, initially using eculizumab together with anticoagulation, is thus the key to treating and preventing thrombosis. New proximal complement inhibitors targeting complement C3 have also shown promising results with further improvements in the clinical prognosis and quality of life of patients. Screening for PNH in patients with unexplained thrombosis must be systematically considered in well characterized cases.
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- 2021
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25. Recurrent genetic abnormalities in human pluripotent stem cells: definition and routine detection in culture supernatant by targeted droplet digital PCR
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Mathieu Fieldes, Thérèse Commes, Anthony Boureux, Julien Bouckenheimer, Chloé Bourguignon, Caroline Sansac, Joffrey Mianné, Said Assou, Engi Ahmed, Mathilde Plinet, Marion Combe, Nicolas Girault, Jean-Marc Lemaitre, John De Vos, Cellules Souches, Plasticité Cellulaire, Médecine Régénératrice et Immunothérapies (IRMB), Université de Montpellier (UM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM), and Salvy-Córdoba, Nathalie
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MESH: Gene Editing ,Genetic abnormalities ,Cell Culture Techniques ,chemistry.chemical_compound ,Cell-free DNA ,0302 clinical medicine ,Genome editing ,Digital polymerase chain reaction ,MESH: Genetic Variation ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,MESH: High-Throughput Nucleotide Sequencing ,Gene Editing ,0303 health sciences ,lcsh:R5-920 ,MESH: Culture Media, Conditioned ,MESH: Real-Time Polymerase Chain Reaction ,High-Throughput Nucleotide Sequencing ,Cell Differentiation ,3. Good health ,Induced pluripotent stem cells ,MESH: Pluripotent Stem Cells ,lcsh:Medicine (General) ,Pluripotency ,MESH: Cell Differentiation ,MESH: Immunophenotyping ,Computational biology ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Biology ,[SDV.GEN.GH] Life Sciences [q-bio]/Genetics/Human genetics ,Real-Time Polymerase Chain Reaction ,Immunophenotyping ,03 medical and health sciences ,MESH: Gene Expression Profiling ,Pluripotent stem cells ,Report ,Humans ,[SDV.BC] Life Sciences [q-bio]/Cellular Biology ,030304 developmental biology ,MESH: Cell Culture Techniques ,MESH: Humans ,Gene Expression Profiling ,Genetic integrity ,Chromosome instability ,Genetic Variation ,Quality control ,DdPCR ,chemistry ,lcsh:Biology (General) ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,Culture Media, Conditioned ,MESH: Biomarkers ,030217 neurology & neurosurgery ,DNA ,Biomarkers - Abstract
Summary Genomic integrity of human pluripotent stem cells (hPSCs) is essential for research and clinical applications. However, genetic abnormalities can accumulate during hPSC generation and routine culture and following gene editing. Their occurrence should be regularly monitored, but the current assays to assess hPSC genomic integrity are not fully suitable for such regular screening. To address this issue, we first carried out a large meta-analysis of all hPSC genetic abnormalities reported in more than 100 publications and identified 738 recurrent genetic abnormalities (i.e., overlapping abnormalities found in at least five distinct scientific publications). We then developed a test based on the droplet digital PCR technology that can potentially detect more than 90% of these hPSC recurrent genetic abnormalities in DNA extracted from culture supernatant samples. This test can be used to routinely screen genomic integrity in hPSCs., Graphical Abstract, Highlights • A meta-analysis was carried out to list genetic abnormalities detected in hPSCs • Recurrent genetic abnormalities in hPSCs were precisely defined • ddPCR is a robust and sensitive approach to screen these recurrent abnormalities • In culture supernatant digital test can be used to rapidly screen iPSC clones, In this article, De Vos and colleagues performed a comprehensive meta-analysis of genetic abnormalities detected in hPSC lines. They then used this information to devise a ddPCR test targeting the majority of recurrent abnormalities and show that this test can be applied to the cell culture supernatant. Finally, they illustrate the interest of this test for routine hPSC screening.
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- 2019
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26. Caractérisation d’un épithélium bronchique dérivé de cellules souches pluripotentes induites humaines (iALI)
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Engi Ahmed, Aurélie Petit, Isabelle Vachier, J. De Vos, Chloé Bourguignon, Said Assou, Arnaud Bourdin, Amel Nasri, Mathieu Fieldes, and Joffrey Mianné
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Pulmonary and Respiratory Medicine - Abstract
Introduction La production in vitro, de maniere reproductible et en larges quantite, d’un epithelium bronchique a partir de cellules souches pluripotentes est un objectif cle pour le criblage de medicaments a haut debit pour identifier de nouvelles molecules et la production de cellules pour une therapie cellulaire en pneumologie (Pharmacol Ther 2018 :183, 58-77). Methodes Nous avons concu une methode simple et reproductible qui conduit un simple echantillon de sang en hiPSC par reprogrammation, puis differencie en 45 jours en epithelium bronchique en interface air-liquide (iALI), en suivant successivement les etapes cles du developpement que sont la formation de l’endoderme definitif (DE) et de l’endoderme anterieur ventralise (vAFE). Resultats La reprogrammation des cellules sanguines d’un patient sain et de 3 patients atteints de BPCO, ainsi que de fibroblastes derives de la peau obtenus chez un patient PCD, a ete obtenue en utilisant des virus Sendai. La purete moyenne des cellules aux stades DE et vAFE evaluee par l’expression de CXCR4 et NKX2.1, respectivement, etait superieure a 85 %, evitant ainsi la necessite d’un tri cellulaire. Lorsqu’elles sont transferees dans des conditions de culture d’interface air-liquide (ALI), les cellules vAFE se differencient en 4 semaines en epithelium bronchique avec de grandes zones couvertes par les principales sous-populations cellulaires de l’epithelium bronchique : cellules basales (KRT5 + ), ciliees (TubIV + ), a mucus (Muc5AC + ), Club (CCSP + ), ainsi que des cellules neuroendocrines (CHGA + )(epithelium bronchique iALI). La microscopie electronique confirme la presence de cils motiles et leur frequence de battement est similaire a celui observe dans des HBEC. Certains iALI ont ete maintenus pendant plus de 400 jours. Conclusions La reprogrammation et la differenciation fiables des hiPSC derives du sang, quel que soit leur contexte clinique, en epithelium bronchique iALI mature et fonctionnel est maintenant accessible a une utilisation plus large, ce qui permettra de mieux comprendre la pathogenese des maladies pulmonaires et d’accelerer le developpement de nouvelles therapies geniques et la decouverte de medicaments.
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- 2021
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27. Non-invasive and rapid test for routine detection of recurrent genetic abnormalities in human pluripotent stem cells
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Chloé Bourguignon, Nicolas Girault, Engi Ahmed, J. De Vos, Said Assou, Joffrey Mianné, A. Nasri, Anthony Boureux, and Mathieu Fieldes
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Cancer Research ,Transplantation ,Immunology ,Non invasive ,Long term maintenance ,Cell Biology ,Computational biology ,Biology ,Genome ,Oncology ,Genome editing ,Immunology and Allergy ,Digital polymerase chain reaction ,Copy-number variation ,Induced pluripotent stem cell ,Genetics (clinical) - Abstract
Background & Aim Genetic integrity of human pluripotent stem cells (hPSCs) is essential for the accuracy of the disease models and for the security of cell therapies that are use those cells. Because genetic abnormalities can accumulate during the generation of hPSC, their long term maintenance or during genome editing, it is mandatory to regularly check the genome of hPSCs. However, the current methods to assess genomic integrity of hPSC are not fully suitable for such regular screening. These approaches can be limited in term of resolution, flexibility, cost and time to process. Our aim is improving genetic screening of hPSC. Methods, Results & Conclusion Based on a large meta-analysis of all hPSC genetic abnormalities reported in more than 100 publications, we were able to exhaustively identify recurrent genetic abnormalities accumulating in hPSCs. We then developed a test (iCS-digital test) based on the droplet digital PCR technology that can detect more than 90% of these hPSC recurrent genetic abnormalities in DNA extracted from culture supernatant samples. This test was successfully used to detect copy number variations that arose during cell culture or gene editing. Hence, the iCS-digital test can be used to routinely screen genomic integrity in hPSCs, contribute to secure genome editing workflow, and reduce time and financial losses induced by the use of an abnormal hPSC lines.
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- 2020
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28. Induced Pluripotent Stem Cells for Primary Ciliary Dyskinesia Modeling and Personalized Medicine
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Chloé Bourguignon, Said Assou, Engi Ahmed, Isabelle Vachier, John De Vos, Arnaud Bourdin, Joffrey Mianné, Mathieu Fieldes, Cellules Souches, Plasticité Cellulaire, Médecine Régénératrice et Immunothérapies (IRMB), Université de Montpellier (UM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Physiologie & médecine expérimentale du Cœur et des Muscles [U 1046] (PhyMedExp), and Université de Montpellier (UM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
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0301 basic medicine ,Pulmonary and Respiratory Medicine ,Mucociliary clearance ,Induced Pluripotent Stem Cells ,Clinical Biochemistry ,Cell- and Tissue-Based Therapy ,iPSCs ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,Bioinformatics ,[SDV.MHEP.PSR]Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,03 medical and health sciences ,otorhinolaryngologic diseases ,Humans ,Medicine ,Precision Medicine ,Induced pluripotent stem cell ,Molecular Biology ,Primary ciliary dyskinesia ,therapy ,business.industry ,Cilium ,Genetic disorder ,cilia ,airway epithelium ,Cell Biology ,medicine.disease ,PCD ,3. Good health ,respiratory tract diseases ,030104 developmental biology ,Motile cilium ,Respiratory epithelium ,Personalized medicine ,business ,Ciliary Motility Disorders - Abstract
International audience; Primary ciliary dyskinesia (PCD) is a rare and heterogeneous genetic disorder that affects the structure and function of motile cilia. In the airway epithelium, impaired ciliary motion results in reduced or absent mucociliary clearance that leads to the appearance of chronic airway infection, sinusitis and bronchiectasis. Currently, there is no effective treatment for PCD, and research is limited by the lack of convenient models to study this disease and investigate innovative therapies. Furthermore, the high heterogeneity of PCD genotypes is likely to hinder the development of a single therapy for all patients. The generation of patient-derived induced pluripotent stem cells (iPSC) and their differentiation into airway epithelium as well as genome editing technologies could represent major tools for in vitro PCD modelling and for developing personalized therapies. Here, we review PCD pathogenesis, and then discuss how human iPSC could be used to model this disease for the development of innovative patient-specific biotherapies.
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- 2018
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29. Changes in cardiovascular disease risk factors over 30 years in Polynesians in the French Pacific Territory of Wallis Island
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Richard J. K. Taylor, Jean Michel Tivollier, Christine Linhart, Dianna J. Magliano, Yann Barguil, Chloé Bourguignon, and Paul Zimmet
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Adult ,Male ,Gerontology ,Native Hawaiian or Other Pacific Islander ,Epidemiology ,030204 cardiovascular system & hematology ,Risk Assessment ,Polynesia ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Risk Factors ,Diabetes mellitus ,Diabetes Mellitus ,medicine ,Humans ,Obesity ,030212 general & internal medicine ,Retrospective Studies ,Plasma glucose ,Cholesterol ,business.industry ,Type 2 Diabetes Mellitus ,Middle Aged ,Prognosis ,medicine.disease ,Survival Rate ,Blood pressure ,Socioeconomic Factors ,chemistry ,Cardiovascular Diseases ,Disease risk ,Female ,Morbidity ,Cardiology and Cardiovascular Medicine ,business ,Body mass index ,Follow-Up Studies ,Forecasting ,Demography - Abstract
Wallis Island is part of a French Territory in the South Pacific. In 1980 the prevalence of hypertension and type 2 diabetes mellitus (T2DM) was low, consistent with a subsistence economy. Considerable social and economic changes have occurred over the last 30 years.Survey data from 1980 and 2009 were analysed by sex in 10-year age groups, and 25-64 years age-standardised to the 2008 Census. Means and prevalences were calculated for blood pressure, fasting plasma glucose, body mass index (BMI), blood cholesterol and triglycerides as risk factors contributing to cardiovascular disease.During 1980-2009 there were significant increases (p 0.05) in age-standardised means and prevalences of blood pressure and hypertension, fasting plasma glucose and T2DM, BMI and obesity, blood cholesterol (men) and triglycerides; and non-significant increases in mean diastolic blood pressure and fasting plasma glucose in women. Mean cholesterol and the prevalence of elevated cholesterol declined in women. Hypertension prevalence increased from 12% to 43% in men and from 15% to 30% in women, with 42% of the increase in men and 33% of the increase in women statistically explained by increases in BMI. T2DM increased from 2.3% to 12.2% in men and from 4.0% to 15.8% in women, with 35% of the increase in men and 26% of the increase in women statistically explained by increases in BMI.Risk factors for cardiovascular disease have increased considerably in Wallis Island over the past 30 years, consistent with modernisation in way of life.
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- 2015
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30. Evaluation of NM-BAPTA method for plasma total calcium measurement on Cobas 8000®
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Thibault Coste, Anne Marie Dupuy, Françoise Michel, Jean-Paul Cristol, and Chloé Bourguignon
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Plasma calcium ,Clinical Biochemistry ,Analytical chemistry ,Reproducibility of Results ,chemistry.chemical_element ,Arsenazo III ,General Medicine ,Calcium ,chemistry.chemical_compound ,chemistry ,BAPTA ,Method comparison ,Human plasma ,Comparison study ,Humans ,Total calcium ,Egtazic Acid - Abstract
A new method was developed by Roche for the measurement of plasma calcium using the chromophore 5-nitro-5'-methyl-(1,2-bis(o-aminophenoxy)ethan-N,N,N',N'-tetraacetic acid (NM-BAPTA) which could have several advantages over the CPC method. The aim of our study was to evaluate the analytical performances of the NM-BAPTA assay from Roche on c701/Cobas 8000® and to perform a comparison study of calcium values with CPC and Arsenazo III methods.The analytical performance including imprecision study, linearity, and stability of the NM-BAPTA assay was tested on the c701/Cobas 8000®analyzer. The most frequent interferences such as magnesium and gadolinium-based contrast agents (Gd-CAs) were examined with spiked human plasma on the selected method. The calcium Arsenazo III method from Horiba (Montpellier, France) installed on ABX Pentra 400® was used as a reference method. Linear regression analysis was performed to compare data from the different methods.The CV of the NM-BAPTA assay showed good analytical performances with CV1.5%, in agreement with the proposed and interim European biologic goals. We found no interference neither with gadobenate dimeglumine nor with gadoteric acid considering significant findings as interference greater than 5%. In the analytical range from 0.85 to 3.80 mmol/L, the NM-BAPTA method was closely correlated to the Arsenazo III method.Our data demonstrate that this new calcium NM-BAPTA method developed by Roche analyzers perform as well as the conventional method, especially for the outermost values. Thus, this new colorimetric assay could substitute the CPC method on Roche analyzers.
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- 2014
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31. Modélisation de l’épithélium bronchique à partir de cellules souches humaines pluripotentes induites (iPSC)
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Said Assou, Arnaud Bourdin, Isabelle Vachier, Chloé Bourguignon, Joffrey Mianné, Mathieu Fiedles, John De Vos, and Engi Ahmed
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Anatomy - Abstract
Les modeles actuels utilises en laboratoire pour mimer les pathologies pulmonaires, et notamment la BPCO comportent des inconvenients majeurs : – le modele murin du fait des discordances fonctionnelles et anatomiques avec la pathologie humaine ; – les cellules epitheliales primaires bronchiques humaines (HBEC) issue de fibroscopie et cultivees en interface air–liquide (ALI) du fait des quantites limitees produites. Les cellules souches humaines pluripotentes induites (iPSC) sont des cellules caracterisees a la fois par une proliferation in vitro illimitee et une capacite a se differencier en tout type cellulaire. Leur utilisation permettrait d’envisager une production illimitee d’epithelium bronchique humain, etape critique pour envisager des programmes de recherche innovant, des programmes de R&D pharmacologiques a large echelle voire de la therapie cellulaire. Nous avons pu reprogrammer du sang peripherique d’un individu sain et de trois patients porteurs de BPCO tres severe en lignees iPSC. Les cellules iPSC ont ete differentiees successivement en sillon primitif anterieur (APS), puis en endoderme definitif (DE), puis en endoderme intestinal anterieur ventralise (vAFE). L’induction du DE est robuste et caracterise par un taux de CXCR4 > 95 % (n = 6). L’etape de vAFE permet d’obtenir des taux de purete > 80–90 % des progeniteurs bronchiques NKX2.1+ (n = 3). Apres polarisation et passage en ALI, les marquages en immunofluorescence et les PCR a 50 jours de differenciation attestent de la presence de cellules a mucus (Muc5AC), de cellules basales (KRT5), de cellules Club (CCSP) et de cellules ciliees (FoxJ1). L’ajustement de parametres de matrice extracellulaire nous a permis des cellules multiciliees mobiles a partir de la lignee normale HY03, documente par video microscopie, et attestant de leur fonctionnalite (n = 1). En conclusion, nous parvenons a obtenir a partir d’iPSC des progeniteurs bronchiques NKX2.1+ en une semaine avec une excellente purete. Ces progeniteurs peuvent ensuite etre differencies en epithelium bronchique comportant des cellules multiciliees fonctionnelles.
- Published
- 2019
- Full Text
- View/download PDF
32. Hemodiafiltration improves free light chain removal and normalizes κ/λ ratio in hemodialysis patients
- Author
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Hélène Leray-Moragues, Jean-Paul Cristol, Marion Morena, Anne Sophie Bargnoux, Bernard Canaud, Chloé Bourguignon, Leila Chenine, Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Physiologie & médecine expérimentale du Cœur et des Muscles [U 1046] (PhyMedExp), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Département de nephrologie, Service de Néphrologie, Dialyse et Soins Intensifs, and Université Montpellier 1 (UM1)-Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)-Hôpital Lapeyronie
- Subjects
Nephrology ,Male ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,HDF ,[SDV]Life Sciences [q-bio] ,030232 urology & nephrology ,Urology ,Normal Reference Range ,Renal function ,Reference range ,Hemodiafiltration ,Internal convection HD ,030204 cardiovascular system & hematology ,03 medical and health sciences ,Immunoglobulin kappa-Chains ,0302 clinical medicine ,Immunoglobulin lambda-Chains ,Renal Dialysis ,Internal medicine ,medicine ,CKD ,Humans ,Prospective Studies ,Renal Insufficiency, Chronic ,Dialysis ,ComputingMilieux_MISCELLANEOUS ,Aged ,Aged, 80 and over ,business.industry ,Middle Aged ,medicine.disease ,Free Light Chain ,Surgery ,Treatment Outcome ,Serum free light chain removal ,Female ,Immunoglobulin Light Chains ,Hemodialysis ,France ,business ,Biomarkers ,Kidney disease - Abstract
Serum free light chain (FLC) levels are correlated with chronic kidney disease (CKD) stages and are highest in patients on hemodialysis (HD). Aim of this study was to assess the FLC removal efficiency of Elisio™-210H dialyzer using either high-flux HD or on line high efficiency hemodiafiltration (HDF) modalities in CKD-5D patients. In this prospective and comparative study, 20 CKD-5D patients free from multiple myeloma were randomized in two groups: HD versus on line HDF. All patients were dialyzed with Elisio™-210H dialyzer. Serum samples were collected before and after the midweek dialysis session, before randomization and at the end of the study to measure κ and λ FLC concentrations. Reduction ratios were corrected for net ultrafiltration. For both HD and HDF mode, κ and λ FLC concentrations were significantly lower after dialysis than before but median reductions in κ and λ FLC levels were significantly higher in HDF versus HD groups (κ 73.5 vs. 65.5 %, p = 0.04 and λ 51.0 vs. 36.6 %, p = 0.07). After dialysis, all κ/λ ratio values were between 0.26 and 1.65 which is the reference range described in subjects with normal kidney function, for both HD and HDF groups (median κ/λ ratios were 0.80 [0.47–1.22] and 0.67 [0.50–0.79] respectively). This study shows the superiority of on line HDF compared with HD to remove both κ and λ FLC. Moreover, all post-dialysis κ/λ ratios reached normal reference range.
- Published
- 2016
- Full Text
- View/download PDF
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