40 results on '"Ching YH"'
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2. Hybrids of two destructive subterranean termites established in the field, revealing a potential for gene flow between species.
- Author
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Chen GY, Huang SY, Lin MD, Chouvenc T, Ching YH, and Li HF
- Subjects
- Animals, Female, Male, Taiwan, Introduced Species, DNA, Mitochondrial genetics, Isoptera genetics, Isoptera physiology, Hybridization, Genetic, Gene Flow, Microsatellite Repeats genetics
- Abstract
Hybridization between invasive pest species may lead to significant genetic and economic impacts that require close monitoring. The two most invasive and destructive termite species worldwide, Coptotermes formosanus Shiraki and Coptotermes gestroi (Wasmann), have the potential for hybridization in the field. A three-year field survey conducted during the dispersal flight season of Coptotermes in Taiwan identified alates with atypical morphology, which were confirmed as hybrids of the two Coptotermes species using microsatellite and mitochondrial analyses. Out of 27,601 alates collected over three years, 4.4% were confirmed as hybrid alates, and some advanced hybrids (>F1 generations) were identified. The hybrid alates had a dispersal flight season that overlapped with the two parental species 13 out of 15 times. Most of the hybrid alates were females, implying that mating opportunities beyond F1 may primarily be possible through female hybrids. However, the incipient colony growth results from all potential mating combinations suggest that only backcross colonies with hybrid males could sometimes lead to brood development. The observed asymmetrical viability and fertility of hybrid alates may critically reduce the probability of advanced-hybrid colonies being established in the field., (© 2024. The Author(s), under exclusive licence to The Genetics Society.)
- Published
- 2024
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3. Hypoglycemic effects of dracorhodin and dragon blood crude extract from Daemonorops draco.
- Author
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Ching YH, Lin FM, Chen HC, Hsu CY, P'ng SY, Lin TN, Wang YC, Lin CJ, Chen YC, Ho TJ, and Chen HP
- Abstract
Background: Dragon blood is a red fruit resin from the palm tree Daemonorops draco and is a herbal ingredient used in the traditional Chinese medicine, "Jinchuang Ointment," which is used to treat non-healing diabetic wounds. According to the Taiwan Herbal Pharmacopeia, the dracorhodin content in dragon blood should exceed 1.0%., Results: Our findings indicate that dracorhodin and dragon blood crude extracts can stimulate glucose uptake in mouse muscle cells (C2C12) and primary rat aortic smooth muscle cells (RSMC). Dracorhodin is not the only active compound in dragon blood crude extracts from D. draco. Next, we orally administered crude dragon blood extracts to male B6 mice. The experimental group displayed a decreasing trend in fasting blood glucose levels from the second to tenth week. In summary, crude extracts of dragon blood from D. draco demonstrated in vivo hypoglycemic effects in B6 male mice., Conclusions: We provide a scientific basis "Jinchuang ointment" in treating non-healing wounds in patients with diabetes., (© 2024. The Author(s).)
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- 2024
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4. Degeneration of the Olfactory System in a Murid Rodent that Evolved Diurnalism.
- Author
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Liao BY, Weng MP, Chang TY, Chang AY, Ching YH, and Wu CH
- Subjects
- Animals, Mammals, Genome, Murinae, Circadian Rhythm physiology
- Abstract
In mammalian research, it has been debated what can initiate an evolutionary tradeoff between different senses, and the phenomenon of sensory tradeoff in rodents, the most abundant mammalian clade, is not evident. The Nile rat (Arvicanthis niloticus), a murid rodent, recently adapted to a diurnal niche through an evolutionary acquisition of daylight vision with enhanced visual acuity. As such, this model provides an opportunity for a cross-species investigation where comparative morphological and multi-omic analyses of the Nile rat are made with its closely related nocturnal species, e.g. the mouse (Mus musculus) and the rat (Rattus norvegicus). Thus, morphological examinations were performed, and evolutionary reductions in relative sizes of turbinal bone surfaces, the cribriform plate, and the olfactory bulb were discovered in Nile rats. Subsequently, we compared multiple murid genomes, and profiled olfactory epithelium transcriptomes of mice and Nile rats at various ages with RNA sequencing. The results further demonstrate that, in comparison with mouse olfactory receptor (OR) genes, Nile rat OR genes have experienced less frequent gain, more frequent loss, and more frequent expression reduction during their evolution. Furthermore, functional degeneration of coding sequences in the Nile rat lineage was found in OR genes, yet not in other genes. Taken together, these results suggest that acquisition of improved vision in the Nile rat has been accompanied by degeneration of both olfaction-related anatomical structures and OR gene repertoires, consistent with the hypothesis of an olfaction-vision tradeoff initiated by the switch from a nocturnal to a diurnal lifestyle in mammals., Competing Interests: Conflict of Interest The authors declare no competing interest., (© The Author(s) 2024. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.)
- Published
- 2024
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5. Genetic Differentiation of the Bloodsucking Midge Forcipomyia taiwana (Diptera: Ceratopogonidae): Implication of the Geographic Isolation by the Central Mountain Ranges in Taiwan.
- Author
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Ching YH, Kuo YC, Su MC, Wang SC, Lin CF, Tu WC, and Lin MD
- Abstract
Forcipomyia ( Lasiohelea ) taiwana , a small bloodsucking midge, thrives in moderately moist habitats and is commonly found in grassy and bushy areas at an elevation below 250 m. This species exhibits a diurnal biting pattern and shows a marked preference for human blood. Although not known to transmit arthropod-borne diseases, the bites of F. taiwana can induce severe allergic reactions in some individuals. As a significant nuisance in Taiwan, affecting both daily life and the tourism industry, comprehensive studies on its population genetics across different geographical regions remain scarce. The central mountain ranges in Taiwan, comprising more than two hundred peaks above 3000 m in elevation, extend from the north to the south of the island, creating distinct eastern and western geographical divisions. This study utilizes microsatellite markers to explore the genetic differentiation of F. taiwana populations located in the eastern and western regions of the mountain ranges. Our findings reveal substantial genetic differentiation among populations inhabiting Taiwan's western region compared to those in the eastern region. This indicates that the topographical barriers presented by the mountain ranges significantly restrict gene flow, particularly given the species' limited active flight ability and habitat preferences. Although passive dispersal mechanisms, like wind or human activity, could contribute, this study concludes that the gene flow of F. taiwana between the western and eastern regions is primarily influenced by topographical constraints.
- Published
- 2024
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6. Educational Robotics for Developing Computational Thinking in Young Learners: A Systematic Review.
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Ching YH and Hsu YC
- Abstract
Educational robotics has been adopted to create interactive and engaging learning environments to develop computational thinking (CT) in K-12 learners. This study systematically examined 22 peer-reviewed empirical research articles on the use of educational robotics to develop CT in young learners (pre-kindergarten to 6th grade) published between 2012 and 2021. The findings revealed that using robotics activities to develop CT has mostly been studied in the formal education settings with the duration of robotics curricular activities ranging from 80 minutes to 24 hours. The five CT skills studied most often include Sequencing, Conditionals, Loops, Debugging, and Algorithmic Thinking. The different versions of LEGO Mindstorms are the most frequently adopted robotic kits in the examined studies. The most frequently adopted learning and instructional strategies in the robotics activities include collaborative learning, project-based learning, and embodied learning. This paper identified and discussed developmentally appropriated CT skills, robotics kits, and pedagogical approaches suitable for supporting CT development in young learners. The findings can guide educators and instructional designers for future robotics activity design and development endeavors. This paper also identified gaps in the current research and recommended directions for advancing research in adopting robotics to develop CT in young learners., Competing Interests: Conflict of InterestThe authors declare that they have no conflict of interest., (© Association for Educational Communications & Technology 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
- Published
- 2023
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7. Interaction in asynchronous discussion boards: a campus-wide analysis to better understand regular and substantive interaction.
- Author
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Gasell C, Lowenthal PR, Uribe-Flórez LJ, and Ching YH
- Abstract
Discussion boards can provide a glimpse into the regular and substantive interaction required in online courses. Advances in technology and an increased interest in learning analytics now provides researchers with billions of data points about instructor and student interaction within a learning management system (LMS). This study used LMS data to explore the frequency of interaction between instructors and students in discussion boards in online courses at one institution. Overall, 415 courses were analyzed spanning two semesters. Results from the study found that the average number of posts by an instructor was 32.9. The average instructor interaction was 1.49 instructor posts per student. 23% of courses had no instructor posts. Student posts averaged 470 per course and the average posts per student was 19.9. Based on the discussion board activity, the most discussion interaction occurred during the first two weeks of the semester. Results also suggested that there is no relationship between student satisfaction and the number of total posts in a course. The paper concludes with implications for research and practice., (© The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2021.)
- Published
- 2022
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8. Teachers' Experiences with and Perceptions of Virtual Manipulatives Following the COVID-19 Pandemic.
- Author
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Keldgord F and Ching YH
- Abstract
While the use of virtual manipulatives (VM) is rising in classrooms, there is still limited research. regarding teacher experiences with and perceptions of virtual manipulatives. Most of the research regarding teacher perceptions of VM has focused only on short-term uses following professional development sessions and none has highlighted the experiences of teachers using them during emergency remote teaching during COVID-19. The purpose of this study was to explore teacher perceptions and. experiences with virtual manipulatives following emergency remote teaching during COVID-19. To achieve this, the researchers conducted an online survey to gather data on educator's ( n = 103) experiences, perceptions, and usage of virtual manipulatives. The qualitative and quantitative data show that educators feel that VM are a valid and feasible support of mathematics instruction when physical manipulatives are not available. Results regarding usage of virtual manipulatives including frequency of use, standards taught, and types used are presented and discussed., Supplementary Information: The online version contains supplementary material available at 10.1007/s11528-022-00796-9., Competing Interests: Conflict of InterestThe authors declare that they have no conflict of interest., (© Association for Educational Communications & Technology 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
- Published
- 2022
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9. Use of Impella Support in Transcatheter Aortic Valve Replacement for a Patient With Severe Aortic Stenosis and Significantly Reduced Ejection Fraction.
- Author
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Ching YH, Qu G, Arnaoutakis GJ, Wayangankar S, and Peng YG
- Subjects
- Aortic Valve diagnostic imaging, Aortic Valve surgery, Humans, Severity of Illness Index, Stroke Volume, Treatment Outcome, Ventricular Function, Left, Aortic Valve Stenosis diagnostic imaging, Aortic Valve Stenosis surgery, Transcatheter Aortic Valve Replacement, Ventricular Dysfunction, Left
- Published
- 2020
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10. Oogenesis of Hematophagous Midge Forcipomyia taiwana (Diptera: Ceratopogonidae) and Nuage Localization of Vasa in Germline Cells.
- Author
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Wang SC, Ching YH, Krishnaraj P, Chen GY, Radhakrishnan AS, Lee HM, Tu WC, and Lin MD
- Abstract
Forcipomyia taiwana is an irritating hematophagous midge that preferentially attacks humans and affects leisure industries in Taiwan. Understanding the female reproductive biology of such pests would facilitate the development of pest control strategies. However, knowledge about oogenesis in the genus Forcipomyia is unavailable. Accordingly, we examined the ovariole structure and features of oogenesis in terms of the oocyte and the nurse cell. After being blood-fed, we observed a high degree of gonotrophic harmony-the synchronization of developing follicles. The follicle of the F. taiwana has only one nurse cell connected to the oocyte, which is distinct among hematophagous midges. In the nurse cell, we identified the perinuclear localization of the germline marker, Vasa. The Vasa localization is reminiscent of the nuclear envelope-associated nuage observed by electron microscopy. To determine whether F. taiwana Vasa (FtVasa) is an authentic nuage component, we produced transgenic flies expressing FtVasa in the female germline and proved that FtVasa was able to be localized to Drosophila nuage. By characterizing the oogenesis and Vasa expression in the germline cells of F. taiwana , this study extends knowledge about the female reproductive biology of hematophagous midges., Competing Interests: The authors declare no conflict of interest.
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- 2020
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11. Novel eye genes systematically discovered through an integrated analysis of mouse transcriptomes and phenome.
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Chiang CY, Ching YH, Chang TY, Hu LS, Yong YS, Keak PY, Mustika I, Lin MD, and Liao BY
- Abstract
In the last few decades, reverse genetic and high throughput approaches have been frequently applied to the mouse ( Mus musculus ) to understand how genes function in tissues/organs and during development in a mammalian system. Despite these efforts, the associated phenotypes for the majority of mouse genes remained to be fully characterized. Here, we performed an integrated transcriptome-phenome analysis by identifying coexpressed gene modules based on tissue transcriptomes profiled with each of various platforms and functionally interpreting these modules using the mouse phenotypic data. Consequently, >15,000 mouse genes were linked with at least one of the 47 tissue functions that were examined. Specifically, our approach predicted >50 genes previously unknown to be involved in mice ( Mus musculus ) visual functions. Fifteen genes were selected for further analysis based on their potential biomedical relevance and compatibility with further experimental validation. Gene-specific morpholinos were introduced into zebrafish ( Danio rerio ) to target their corresponding orthologs. Quantitative assessments of phenotypes of developing eyes confirmed predicted eye-related functions of 13 out of the 15 genes examined. These novel eye genes include: Adal , Ankrd33 , Car14 , Ccdc126 , Dhx32 , Dkk3 , Fam169a , Grifin , Kcnj14 , Lrit2 , Ppef2 , Ppm1n , and Wdr17 . The results highlighted the potential for this phenome-based approach to assist the experimental design of mutating and phenotyping mouse genes that aims to fully reveal the functional landscape of mammalian genomes., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2019 The Authors.)
- Published
- 2019
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12. Promyelocytic leukemia zinc finger is involved in the formation of deep layer cortical neurons.
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Lin HC, Ching YH, Huang CC, Pao PC, Lee YH, Chang WC, Kao TJ, and Lee YC
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- Animals, Cerebral Cortex growth & development, Cerebral Cortex physiology, Mice, Promyelocytic Leukemia Zinc Finger Protein metabolism, Gene Expression physiology, Neurogenesis genetics, Neurons physiology, Promyelocytic Leukemia Zinc Finger Protein genetics
- Abstract
Background: Promyelocytic leukemia zinc finger (Plzf), a transcriptional regulator involved in a lot of important biological processes during development, has been implied to maintain neural stem cells and inhibit their differentiation into neurons. However, the effects of Plzf on brain structures and functions are still not clarified., Results: We showed that Plzf expression was detected as early as embryonic day (E) 9.5 in Pax6
+ cells in the mouse brain, and was completely disappeared in telencephalon before the initiation of cortical neurogenesis. Loss of Plzf resulted in a smaller cerebral cortex with a decrease in the number of Tbr1+ deep layer neurons due to a decrease of mitotic cell number in the ventricular zone of forebrain at early developmental stage. Microarray, qRT-PCR, and flow cytometry analysis identified dysregulation of Mash1 proneural gene expression. We also observed an impairment of recognition memory in Plzf-deficient mice., Conclusions: Plzf is expressed at early stages of brain development and involved in the formation of deep layer cortical neurons. Loss of Plzf results in dysregulation of Mash1, microcephaly with reduced numbers of early-born neurons, and impairment of recognition memory.- Published
- 2019
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13. A CRYBB2 mutation in a Taiwanese family with autosomal dominant cataract.
- Author
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Ching YH, Yeh JI, Fan WL, Chen KC, Yeh MC, Woon PY, and Lee YC
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- Adolescent, Adult, Exons, Family, Female, Genetic Predisposition to Disease, Humans, Male, Mutation, Phylogeny, Polymorphism, Single Nucleotide, Taiwan, Exome Sequencing, Young Adult, Cataract genetics, Chromosomes, Human, Pair 18, Chromosomes, Human, Pair 22, beta-Crystallin B Chain genetics
- Abstract
Background/purpose: To identify the underlying genetic cause of a Taiwanese family with autosomal dominant cerulean cataract., Methods: A three-generation cerulean cataract family with 13 affected and 13 normal was identified. Whole exome sequencing, whole genome single nucleotide polymorphism genotyping and haplotype analysis, and fine mapping using polymorphic short tandem repeat markers were used to identify the causative gene mutation., Results: Whole genome single nucleotide polymorphism genotyping and haplotype analysis mapped the candidate disease loci to chromosome 18 and chromosome 22. Polymorphic short tandem repeat markers further narrowed down the disease interval to chromosome 22 between markers D22S1174 and D22S1163. Whole exome sequencing was performed on selected individuals. Polymorphisms detected were filtered based on their genomic positions, allele frequency (<1%), and segregation within the pedigree. Affected individuals were found to be heterozygous carrying a C to T mutation on exon 6 of the CRYBB2 gene (with SNP ID: rs74315489). The mutation was predicted to produce a premature stop mutation Q155X. The mutation is co-segregation across the pedigree and the disease "T" allele was not detected in healthy members of the family and in additional 50 normal controls (100 chromosomes). Phylogenic protein alignment was also performed for the CRYBB2 gene across 68 species ranging from fishes, Sauropsida, Placentalia, carnivores, rodents, and primates with total 56 orthologous genes. The Q155 residue is 100% conserved across the evolutionary tree, indicating its crucial function., Conclusion: Here we identify the first Taiwanese cerulean cataract family carrying a CRYBB2_Q155X mutation., (Copyright © 2018. Published by Elsevier B.V.)
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- 2019
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14. Nonalcoholic Fatty Liver Disease Is Exacerbated in High-Fat Diet-Fed Gnotobiotic Mice by Colonization with the Gut Microbiota from Patients with Nonalcoholic Steatohepatitis.
- Author
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Chiu CC, Ching YH, Li YP, Liu JY, Huang YT, Huang YW, Yang SS, Huang WC, and Chuang HL
- Subjects
- Adipose Tissue, Animals, Humans, Liver metabolism, Liver pathology, Male, Mice, Mice, Inbred C57BL, Diet, High-Fat, Gastrointestinal Microbiome, Germ-Free Life, Non-alcoholic Fatty Liver Disease microbiology
- Abstract
Nonalcoholic fatty liver disease (NAFLD) is a serious liver disorder associated with the accumulation of fat and inflammation. The objective of this study was to determine the gut microbiota composition that might influence the progression of NAFLD. Germ-free mice were inoculated with feces from patients with nonalcoholic steatohepatitis (NASH) or from healthy persons (HL) and then fed a standard diet (STD) or high-fat diet (HFD). We found that the epididymal fat weight, hepatic steatosis, multifocal necrosis, and inflammatory cell infiltration significantly increased in the NASH-HFD group. These findings were consistent with markedly elevated serum levels of alanine transaminase, aspartate transaminase, endotoxin, interleukin 6 (IL-6), monocyte chemotactic protein 1 (Mcp1), and hepatic triglycerides. In addition, the mRNA expression levels of Toll-like receptor 2 (Tlr2 ), Toll-like receptor 4 (Tlr4) , tumor necrosis factor alpha ( Tnf-α ), Mcp1 , and peroxisome proliferator-activated receptor gamma ( Ppar-γ ) significantly increased. Only abundant lipid accumulation and a few inflammatory reactions were observed in group HL-HFD. Relative abundance of Bacteroidetes and Firmicutes shifted in the HFD-fed mice. Furthermore, the relative abundance of Streptococcaceae was the highest in group NASH-HFD. Nevertheless, obesity-related Lactobacillaceae were significantly upregulated in HL-HFD mice. Our results revealed that the gut microbiota from NASH Patients aggravated hepatic steatosis and inflammation. These findings might partially explain the NAFLD progress distinctly was related to different compositions of gut microbiota., Competing Interests: The authors declare that they have no conflicts of interest.
- Published
- 2017
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15. TLR2 and interleukin-10 are involved in Bacteroides fragilis-mediated prevention of DSS-induced colitis in gnotobiotic mice.
- Author
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Chang YC, Ching YH, Chiu CC, Liu JY, Hung SW, Huang WC, Huang YT, and Chuang HL
- Subjects
- Animals, Colitis chemically induced, Colitis genetics, Colitis pathology, Dextran Sulfate, Gastrointestinal Microbiome immunology, Gene Expression Regulation, Germ-Free Life, Interleukin-10 deficiency, Interleukin-10 genetics, Interleukin-6 genetics, Interleukin-6 immunology, Male, Mice, Mice, Knockout, Signal Transduction, Symbiosis immunology, Toll-Like Receptor 2 deficiency, Toll-Like Receptor 2 genetics, Toll-Like Receptor 4 deficiency, Toll-Like Receptor 4 genetics, Tumor Necrosis Factor-alpha genetics, Tumor Necrosis Factor-alpha immunology, Bacteroides fragilis immunology, Colitis immunology, Interleukin-10 immunology, Toll-Like Receptor 2 immunology, Toll-Like Receptor 4 immunology
- Abstract
Background and Aims: Bacteroides fragilis (BF) are Gram-negative anaerobe symbionts present in the colon. Recent studies have reported the beneficial role of BF in maintaining intestinal homeostasis, stimulating host immunologic development, and preventing infectious colitis caused by pathogenic bacteria. Our previous studies showed that monocolonization of germ-free mice with BF significantly reduced colon inflammations and damage., Methods: In order to investigate the Toll-like receptor-2 (TLR2), TLR4, and interleukin 10 (IL-10) molecular signaling pathways involved in BF-mediated prevention of dextran sulfate sodium (DSS)-induced colitis. The wild-type (WT), TLR4, TLR2, and IL-10 knockout (-/-) germ-free mice grown were with or without BF colonization for 28 days, and then administered 1% DSS in drinking water for 7 day to induce acute ulcerative colitis., Results: We compared phenotypes such as weight loss, disease activity, intestinal histological scores, and immunohistochemistry for inflammatory cells. Unlike WT and TLR4-/- mice, the severity of DSS-colitis did not improve in TLR2-/- animals after BF colonization. The BF enhanced anti-inflammatory cytokines IL-10 expression and inhibited pro-inflammatory-related tumor necrosis factor (TNF-α) and IL-6 mRNA expression in both WT and TLR4-/- mice. In contrast, the failed to up-regulated IL-10 and down-regulated the TNF-α and IL-6 in BF colonization TLR2-/- mice. In addition, we further perform IL-10-/- mice to clarify whether the BF through TLR2 /IL-10 pathway to alleviate DSS-colitis. There were no significant differences in colitis severity and pro-inflammatory related genes expression in the IL-10-/- mice with or without BF colonization., Conclusions: These results indicate the disease-preventing effects of BF in acute DSS-induced colitis may occur through the TLR2/IL-10 signal pathway.
- Published
- 2017
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16. R2d2 Drives Selfish Sweeps in the House Mouse.
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Didion JP, Morgan AP, Yadgary L, Bell TA, McMullan RC, Ortiz de Solorzano L, Britton-Davidian J, Bult CJ, Campbell KJ, Castiglia R, Ching YH, Chunco AJ, Crowley JJ, Chesler EJ, Förster DW, French JE, Gabriel SI, Gatti DM, Garland T Jr, Giagia-Athanasopoulou EB, Giménez MD, Grize SA, Gündüz İ, Holmes A, Hauffe HC, Herman JS, Holt JM, Hua K, Jolley WJ, Lindholm AK, López-Fuster MJ, Mitsainas G, da Luz Mathias M, McMillan L, Ramalhinho Mda G, Rehermann B, Rosshart SP, Searle JB, Shiao MS, Solano E, Svenson KL, Thomas-Laemont P, Threadgill DW, Ventura J, Weinstock GM, Pomp D, Churchill GA, and Pardo-Manuel de Villena F
- Subjects
- Adaptation, Physiological genetics, Alleles, Animals, Biological Evolution, DNA Copy Number Variations genetics, Evolution, Molecular, Female, Genetic Variation, Genetics, Population, Male, Mice, Models, Genetic, Mutation, Selection, Genetic, Nuclear Proteins genetics, RNA-Binding Proteins genetics, Repetitive Sequences, Nucleic Acid
- Abstract
A selective sweep is the result of strong positive selection driving newly occurring or standing genetic variants to fixation, and can dramatically alter the pattern and distribution of allelic diversity in a population. Population-level sequencing data have enabled discoveries of selective sweeps associated with genes involved in recent adaptations in many species. In contrast, much debate but little evidence addresses whether "selfish" genes are capable of fixation-thereby leaving signatures identical to classical selective sweeps-despite being neutral or deleterious to organismal fitness. We previously described R2d2, a large copy-number variant that causes nonrandom segregation of mouse Chromosome 2 in females due to meiotic drive. Here we show population-genetic data consistent with a selfish sweep driven by alleles of R2d2 with high copy number (R2d2(HC)) in natural populations. We replicate this finding in multiple closed breeding populations from six outbred backgrounds segregating for R2d2 alleles. We find that R2d2(HC) rapidly increases in frequency, and in most cases becomes fixed in significantly fewer generations than can be explained by genetic drift. R2d2(HC) is also associated with significantly reduced litter sizes in heterozygous mothers, making it a true selfish allele. Our data provide direct evidence of populations actively undergoing selfish sweeps, and demonstrate that meiotic drive can rapidly alter the genomic landscape in favor of mutations with neutral or even negative effects on overall Darwinian fitness. Further study will reveal the incidence of selfish sweeps, and will elucidate the relative contributions of selfish genes, adaptation and genetic drift to evolution., (© The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
- Published
- 2016
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17. Ribosome Protein L4 is essential for Epstein-Barr Virus Nuclear Antigen 1 function.
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Shen CL, Liu CD, You RI, Ching YH, Liang J, Ke L, Chen YL, Chen HC, Hsu HJ, Liou JW, Kieff E, and Peng CW
- Subjects
- B-Lymphocytes metabolism, B-Lymphocytes virology, Cell Line, DNA, Viral genetics, DNA, Viral metabolism, Epstein-Barr Virus Nuclear Antigens genetics, Gene Knockdown Techniques, Genome, Viral, Herpesvirus 4, Human genetics, Herpesvirus 4, Human pathogenicity, Host-Pathogen Interactions, Humans, Phosphoproteins genetics, Phosphoproteins metabolism, Plasmids genetics, Plasmids metabolism, RNA, Small Interfering genetics, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Replication Origin, Ribosomal Proteins antagonists & inhibitors, Ribosomal Proteins genetics, Transcriptional Activation, Nucleolin, Epstein-Barr Virus Nuclear Antigens metabolism, Herpesvirus 4, Human metabolism, Ribosomal Proteins metabolism
- Abstract
Epstein-Barr Virus (EBV) Nuclear Antigen 1 (EBNA1)-mediated origin of plasmid replication (oriP) DNA episome maintenance is essential for EBV-mediated tumorigenesis. We have now found that EBNA1 binds to Ribosome Protein L4 (RPL4). RPL4 shRNA knockdown decreased EBNA1 activation of an oriP luciferase reporter, EBNA1 DNA binding in lymphoblastoid cell lines, and EBV genome number per lymphoblastoid cell line. EBV infection increased RPL4 expression and redistributed RPL4 to cell nuclei. RPL4 and Nucleolin (NCL) were a scaffold for an EBNA1-induced oriP complex. The RPL4 N terminus cooperated with NCL-K429 to support EBNA1 and oriP-mediated episome binding and maintenance, whereas the NCL C-terminal K380 and K393 induced oriP DNA H3K4me2 modification and promoted EBNA1 activation of oriP-dependent transcription. These observations provide new insights into the mechanisms by which EBV uses NCL and RPL4 to establish persistent B-lymphoblastoid cell infection.
- Published
- 2016
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18. An Analysis of Inhalation Injury Diagnostic Methods and Patient Outcomes.
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Ching JA, Ching YH, Shivers SC, Karlnoski RA, Payne WG, and Smith DJ Jr
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- Adult, Bronchoscopy, Burns, Inhalation mortality, Critical Care, Female, Humans, Injury Severity Score, Length of Stay, Male, Predictive Value of Tests, Prognosis, Respiration, Artificial, Retrospective Studies, United States, Burns, Inhalation diagnosis, Burns, Inhalation therapy, Patient Outcome Assessment
- Abstract
The purpose of this study was to compare patient outcomes according to the method of diagnosing burn inhalation injury. After approval from the American Burn Association, the National Burn Repository Dataset Version 8.0 was queried for patients with a diagnosis of burn inhalation injury. Subgroups were analyzed by diagnostic method as defined by the National Burn Repository. All diagnostic methods listed for each patient were included, comparing mortality, hospital days, intensive care unit (ICU) days, and ventilator days (VDs). Z-tests, t-tests, and linear regression were used with a statistical significance of P value of less than .05. The database query yielded 9775 patients diagnosed with inhalation injury. The greatest increase in mortality was associated with diagnosis by bronchoscopy or carbon monoxide poisoning. A relative increase in hospital days was noted with diagnosis by bronchoscopy (9 days) or history (2 days). A relative increase in ICU days was associated with diagnosis according to bronchoscopy (8 days), clinical findings (2 days), or history (2 days). A relative increase in VDs was associated with diagnosis by bronchoscopy (6 days) or carbon monoxide poisoning (3 days). The combination of diagnosis by bronchoscopy and clinical findings increased the relative difference across all comparison measures. The combination of diagnosis by bronchoscopy and carbon monoxide poisoning exhibited decreased relative differences when compared with bronchoscopy alone. Diagnosis by laryngoscopy showed no mortality or association with poor outcomes. Bronchoscopic evidence of inhalation injury proved most useful, predicting increased mortality, hospital, ICU, and VDs. A combined diagnosis determined by clinical findings and bronchoscopy should be considered for clinical practice.
- Published
- 2016
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19. The value of occlusive balloons in the management of abnormal placentation: A retrospective study.
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Omar HR, Sprenker C, Alvey E, Hoffman M, Karlnoski R, Ching YH, Cain M, Mangar D, and Camporesi EM
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- Adult, Female, Humans, Placentation, Pregnancy, Retrospective Studies, Obstetric Surgical Procedures instrumentation, Placenta Accreta surgery
- Abstract
Abnormal placentation is a potential cause of maternal morbidity and mortality from massive postpartum bleeding. The objective of this study was to investigate the efficacy of occlusive balloons when used as an adjunct to surgery in reducing blood loss and transfusion requirements. A retrospective study of 42 patients was performed involving consecutive cases of abnormal placentation who delivered with either conventional surgery with preoperatively placed occlusive balloons or conventional surgery alone. No differences were noted between the control group and the group of patients who had occlusive balloons with regard to estimated blood loss (P = 0.767), packed red blood cells transfused (P = 0.799), amount of crystalloids infused (P = 0.435), total procedure duration (P = 0.076), and length of ICU stay (P = 0.315) or total hospital stay (P = 0.254). Prophylactic intravascular balloon catheters did not benefit women with abnormal placentation when compared with conventional surgery alone.
- Published
- 2016
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20. Recombinant Activated Factor VII Significantly Reduces Transfusion Requirements in Cardiothoracic Surgery.
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Omar HR, Enten G, Karlnoski R, Ching YH, Mangar D, and Camporesi EM
- Subjects
- Cardiac Surgical Procedures methods, Female, Humans, Male, Middle Aged, Recombinant Proteins therapeutic use, Retrospective Studies, Factor VIIa therapeutic use, Hemorrhage drug therapy, Transfusion Reaction
- Abstract
Background: The off-label use of recombinant activated factor VII (rFVIIa) for intractable bleeding is associated with a risk of thrombotic events. The objective of this study was to evaluate the incidence and predictors of rFVIIa-related thrombotic events and its efficacy in the reduction of transfusion requirements during various surgeries., Methods: Ninety-two cases received rFVIIa for uncontrollable bleeding despite medical and surgical hemostasis. The incidence and risk factors of thrombotic events were analyzed. Blood products transfused in the 24 h before and after rFVIIa injection were calculated. Subgroup analysis was performed to see which types of surgeries benefited most from rFVIIa., Results: The main indication for rFVIIa administration was uncontrollable bleeding during cardiothoracic surgery followed by coagulopathy due to liver failure followed by neurosurgical procedures. Requirements of blood products after rFVIIa decreased significantly by 45 % (p = 0.012), 52 % (p = 0.0001), and 75 % (p = 0.0001) for red blood cells, plasma, and cryoprecipitate, respectively. Subgroup analysis showed that cardiothoracic surgery was the sole group that benefited from rFVIIa with a reduction in transfusion of red blood cells (p = 0.013), plasma (p = 0.0001), and cryoprecipitate (p = 0.0001). Thrombotic events occurred in 9.8 % of the cases mostly on the arterial side (89 %) and have not contributed to mortality., Conclusion: rFVIIa can significantly reduce transfusion requirements when given for intractable bleeding during cardiothoracic surgery at the expense of thrombotic events in approximately one tenth of the cases. Further prospective studies are necessary to study if this effect of rFVIIa is translated to a favorable outcome.
- Published
- 2015
- Full Text
- View/download PDF
21. In reply: Lingual traction to aid fiberoptic intubation.
- Author
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Ching YH, Camporesi EM, and Mangar D
- Subjects
- Female, Humans, Male, Airway Management methods, Intubation, Intratracheal methods, Tongue, Traction methods
- Published
- 2015
- Full Text
- View/download PDF
22. Lingual traction to facilitate fiber-optic intubation of difficult airways: a single-anesthesiologist randomized trial.
- Author
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Ching YH, Karlnoski RA, Chen H, Camporesi EM, Shah VV, Padhya TA, and Mangar D
- Subjects
- Adult, Aged, Airway Management instrumentation, Anesthesia, Inhalation methods, Cohort Studies, Endpoint Determination, Female, Fiber Optic Technology, Humans, Intubation, Intratracheal instrumentation, Male, Middle Aged, Pharyngitis epidemiology, Postoperative Complications epidemiology, Prospective Studies, Treatment Outcome, Airway Management methods, Intubation, Intratracheal methods, Tongue, Traction methods
- Abstract
Purpose: Flexible fiber-optic bronchoscope-guided orotracheal intubation is a valuable technique with demonstrated benefits in the management of difficult airways. Despite its popularity with anesthesia providers, the technique is not fail-safe and airway-related complications secondary to failed intubation attempts remain an important problem. We sought to determine the effect of incorporating lingual traction on the success rate of fiber-optic bronchoscope-guided intubation in patients with anticipated difficult airways., Methods: In this prospective, randomized, cohort study, we enrolled 91 adult patients with anticipated difficult airways scheduled for elective surgery to undergo fiber-optic bronchoscope-guided orotracheal intubation alone or with lingual traction by an individual anesthesiologist after induction of general anesthesia and neuromuscular blockade. A total of 78 patients were randomized: 39 patients to the fiber-optic bronchoscope-guided intubation with lingual traction group and 39 patients to the fiber-optic bronchoscope-guided intubation alone group. The primary endpoint was the rate of successful first attempt intubations. The secondary outcome was sore throat grade on post-operative day 1., Results: Fiber-optic intubation with lingual traction compared to fiber-optic intubation alone resulted in a higher success rate (92.3 vs. 74.4 %, χ (2) = 4.523, p = 0.033) and greater odds for successful first attempt intubation (OR 4.138, 95 % CI 1.041-16.444, p = 0.044). Sore throat severity on post-operative day 1 was not significantly different but trended towards worsening grades with lingual traction., Conclusions: In this study, lingual traction was shown to be a valuable maneuver for facilitating fiber-optic bronchoscope-guided intubation in the management of patients with anticipated difficult airways.
- Published
- 2015
- Full Text
- View/download PDF
23. Pulmonary embolism presenting as a seizure in the immediate postpartum period.
- Author
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Ching YH, Alvey EN, Omar HR, Lynch CM, Mangar D, and Camporesi EM
- Subjects
- Adult, Echocardiography, Embolectomy, Female, Humans, Postpartum Period, Pregnancy, Pulmonary Embolism complications, Puerperal Disorders diagnostic imaging, Pulmonary Embolism diagnostic imaging, Seizures etiology
- Published
- 2015
- Full Text
- View/download PDF
24. Preimplantation genetic diagnosis for carriers with chromosomal translocations undergoing assisted reproductive technologies therapy.
- Author
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Ching YH
- Subjects
- Female, Humans, Male, Pregnancy, Blastocyst pathology, Comparative Genomic Hybridization methods, Genetic Carrier Screening methods, Preimplantation Diagnosis methods, Translocation, Genetic
- Published
- 2014
- Full Text
- View/download PDF
25. Argon plasma coagulation in the management of uncovered tracheal stent fracture.
- Author
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Ching YH, Geck RD, Andrews AD, Rumbak MJ, and Camporesi EM
- Abstract
Endotracheal and endobronchial stenting, particularly with uncovered stents, can be complicated by stent fracture, granulation tissue formation, direct airway injury, and airway obstruction. While stent removal is possible, it can result in significant complications and long-term benefit is not guaranteed. Argon plasma coagulation can be employed to trim fractured stent fragments and remove granulation tissue simultaneously. In this manuscript, we report a case and describe our experience with using this technique.
- Published
- 2014
- Full Text
- View/download PDF
26. Lingual traction to facilitate fibreoptic intubation in patients with difficult airways under general anesthesia.
- Author
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Mangar D, Ching YH, Shah VV, and Camporesi EM
- Subjects
- Humans, Traction, Anesthesia, General, Fiber Optic Technology, Intubation, Intratracheal methods, Tongue physiology
- Published
- 2014
- Full Text
- View/download PDF
27. DNMT3L promotes quiescence in postnatal spermatogonial progenitor cells.
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Liao HF, Chen WS, Chen YH, Kao TH, Tseng YT, Lee CY, Chiu YC, Lee PL, Lin QJ, Ching YH, Hata K, Cheng WT, Tsai MH, Sasaki H, Ho HN, Wu SC, Huang YH, Yen P, and Lin SP
- Subjects
- Alleles, Animals, Cell Proliferation, DNA (Cytosine-5-)-Methyltransferases genetics, DNA Methylation, DNA-Binding Proteins metabolism, Epigenesis, Genetic, Extracellular Signal-Regulated MAP Kinases metabolism, Heterozygote, Male, Mice, Mice, Knockout, Proto-Oncogene Proteins c-akt metabolism, Testis metabolism, Transcription Factors metabolism, Zinc Fingers, Adult Stem Cells metabolism, DNA (Cytosine-5-)-Methyltransferases physiology, Gene Expression Regulation, Developmental, Spermatogonia metabolism
- Abstract
The ability of adult stem cells to reside in a quiescent state is crucial for preventing premature exhaustion of the stem cell pool. However, the intrinsic epigenetic factors that regulate spermatogonial stem cell quiescence are largely unknown. Here, we investigate in mice how DNA methyltransferase 3-like (DNMT3L), an epigenetic regulator important for interpreting chromatin context and facilitating de novo DNA methylation, sustains the long-term male germ cell pool. We demonstrated that stem cell-enriched THY1(+) spermatogonial stem/progenitor cells (SPCs) constituted a DNMT3L-expressing population in postnatal testes. DNMT3L influenced the stability of promyelocytic leukemia zinc finger (PLZF), potentially by downregulating Cdk2/CDK2 expression, which sequestered CDK2-mediated PLZF degradation. Reduced PLZF in Dnmt3l KO THY1(+) cells released its antagonist, Sal-like protein 4A (SALL4A), which is associated with overactivated ERK and AKT signaling cascades. Furthermore, DNMT3L was required to suppress the cell proliferation-promoting factor SALL4B in THY1(+) SPCs and to prevent premature stem cell exhaustion. Our results indicate that DNMT3L is required to delicately balance the cycling and quiescence of SPCs. These findings reveal a novel role for DNMT3L in modulating postnatal SPC cell fate decisions., (© 2014. Published by The Company of Biologists Ltd.)
- Published
- 2014
- Full Text
- View/download PDF
28. The difficult intraoperative nasogastric tube intubation: A review of the literature and a novel approach.
- Author
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Ching YH, Socias SM, Ciesla DJ, Karlnoski RA, Camporesi EM, and Mangar D
- Abstract
Nasogastric tube intubation of a patient under general anesthesia with an endotracheal tube in place can pose a challenge to the most experienced anesthesiologist. Physiologic and pathologic variations in a patient's functional anatomy can present further difficulty. While numerous techniques to the difficult nasogastric tube intubation have been described, there is no consensus for a standard approach. Therefore, selecting the most appropriate approach requires a working knowledge of the techniques available, mindful consideration of individual patient and clinical factors, and the operator's experience and preference. This article reviews the relevant literature regarding various approaches to the difficult nasogastric tube intubation with descriptions of techniques and results from comparative studies if available. Additionally, we present a novel approach using a retrograde technique for the difficult intraoperative nasogastric tube intubation.
- Published
- 2014
- Full Text
- View/download PDF
29. Monocolonization of germ-free mice with Bacteroides fragilis protects against dextran sulfate sodium-induced acute colitis.
- Author
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Chiu CC, Ching YH, Wang YC, Liu JY, Li YP, Huang YT, and Chuang HL
- Subjects
- Acute Disease, Animals, Blood Cell Count, Colitis blood, Colitis pathology, Colon metabolism, Colon pathology, Colony Count, Microbial, Dextran Sulfate, Gene Expression Regulation, Inflammation pathology, Kaplan-Meier Estimate, Male, Mice, Inbred C57BL, Peroxidase metabolism, Real-Time Polymerase Chain Reaction, Bacteroides fragilis growth & development, Colitis microbiology, Colitis prevention & control, Germ-Free Life
- Abstract
Ulcerative colitis is inflammatory conditions of the colon caused by interplay of genetic and environmental factors. Previous studies indicated that the gut microflora may be involved in the colonic inflammation. Bacteroides fragilis (BF) is a Gram-negative anaerobe belonging to the colonic symbiotic. We aimed to investigate the protective role of BF in a colitis model induced in germ-free (GF) mice by dextran sulfate sodium (DSS). GF C57BL/6JNarl mice were colonized with BF for 28 days before acute colitis was induced by DSS. BF colonization significantly increased animal survival by 40%, with less reduction in colon length, and decreased infiltration of inflammatory cells (macrophages and neutrophils) in colon mucosa following challenge with DSS. In addition, BF could enhance the mRNA expression of anti-inflammatory-related cytokine such as interleukin 10 (IL-10) with polymorphism cytokine IL-17 and diminish that of proinflammatory-related tumor necrosis factor α with inducible nitric oxide synthase in the ulcerated colon. Myeloperoxidase activity was also decreased in BF-DSS mice. Taking these together, the BF colonization significantly ameliorated DSS-induced colitis by suppressing the activity of inflammatory-related molecules and inducing the production of anti-inflammatory cytokines. BF may play an important role in maintaining intestinal immune system homeostasis and regulate inflammatory responses.
- Published
- 2014
- Full Text
- View/download PDF
30. Pretreatment with lipopolysaccharide ameliorates Pseudomonas exotoxin A-induced hepatotoxicity in rats.
- Author
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Chiu CC, Huang YT, Wang YC, Chang YC, Ching YH, Chen HH, and Chuang HL
- Subjects
- Alanine Transaminase metabolism, Animals, Apoptosis drug effects, Aspartate Aminotransferases metabolism, Chemical and Drug Induced Liver Injury enzymology, Chemical and Drug Induced Liver Injury etiology, Chemical and Drug Induced Liver Injury metabolism, Drug Interactions, Gadolinium pharmacology, Hepatocytes drug effects, Hepatocytes metabolism, Interferon-gamma metabolism, Interleukins metabolism, Kupffer Cells drug effects, Kupffer Cells metabolism, Liver enzymology, Male, Pseudomonas metabolism, Rats, Rats, Nude, Rats, Wistar, T-Lymphocytes drug effects, T-Lymphocytes metabolism, Tumor Necrosis Factor-alpha metabolism, Pseudomonas aeruginosa Exotoxin A, ADP Ribose Transferases antagonists & inhibitors, ADP Ribose Transferases toxicity, Bacterial Toxins antagonists & inhibitors, Bacterial Toxins toxicity, Chemical and Drug Induced Liver Injury drug therapy, Exotoxins antagonists & inhibitors, Exotoxins toxicity, Lipopolysaccharides pharmacology, Liver drug effects, Virulence Factors antagonists & inhibitors, Virulence Factors toxicity
- Abstract
Context: Liver injury can be induced by various hepatotoxicants, including Pseudomonas aeruginosa exotoxin A (PEA). Our previous study indicated that PEA-induced rat hepatotoxicity was T cells and Kupffer cells dependent. Several reports have demonstrated that non-toxic doses of bacterial lipopolysaccharide (LPS) can protect liver against the chemicals-induced toxicity such as acetaminophen and concanavalin-A., Objective: This study aimed to investigate the protecting mechanisms of LPS on PEA-induced hepatotoxicity., Results: Rats pretreated with LPS (40 μg/kg, 12 h before PEA admission) significantly decreased animal mortality, serum enzyme (ALT, AST and T-bil) activities, histopathological changes and hepatocytes apoptosis following challenge with PEA. The concentrations of tumor necrosis factor-alpha (TNF-α), interferon-gamma (IFN-γ) and interleukin-2 (IL-2) were reduced, but IL-6 and IL-10 were increased in the serum. In addition, prior treatment of these LPS-pretreated rats with gadolinium chloride (GdCl3), a selective Kupffer cell depletion agent, markedly enhanced liver injury after PEA administration. In contrast, the pretreatment of LPS to T-cell deficient athymic nude rats still display significant attenuation of PEA-induced liver injury. This observation further confirmed our hypothesis that LPS ameliorate PEA-hepatotoxicity was through Kupffer cells but not T cells. Moreover, LPS-induced hepatoprotection ability was neutralized by co-treatment with anti-TNF-α antibodies, but not with anti-IFN-γ antibodies. Finally, replacement of LPS with RS-LPS (Rhodobacter sphaeroides LPS), a Toll like receptor-4 (TLR-4) antagonist, resulted in severe hepatotoxicity., Conclusion: These results suggested that Kupffer cells, TNF-α and TLR-4 play central mediator roles during the hepatoprotection against PEA-induced hepatotoxicity conferred by LPS.
- Published
- 2013
- Full Text
- View/download PDF
31. Transcriptomes of mouse olfactory epithelium reveal sexual differences in odorant detection.
- Author
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Shiao MS, Chang AY, Liao BY, Ching YH, Lu MY, Chen SM, and Li WH
- Subjects
- Animals, Evolution, Molecular, Female, Gene Expression Regulation, High-Throughput Nucleotide Sequencing, Male, Mice, Sex Characteristics, Transcriptome genetics, X Chromosome genetics, Olfactory Mucosa metabolism, Pheromones genetics, Pheromones metabolism, Receptors, Odorant genetics, Receptors, Odorant metabolism
- Abstract
To sense numerous odorants and chemicals, animals have evolved a large number of olfactory receptor genes (Olfrs) in their genome. In particular, the house mouse has ~1,100 genes in the Olfr gene family. This makes the mouse a good model organism to study Olfr genes and olfaction-related genes. To date, whether male and female mice possess the same ability in detecting environmental odorants is still unknown. Using the next generation sequencing technology (paired-end mRNA-seq), we detected 1,088 expressed Olfr genes in both male and female olfactory epithelium. We found that not only Olfr genes but also odorant-binding protein (Obp) genes have evolved rapidly in the mouse lineage. Interestingly, Olfr genes tend to express at a higher level in males than in females, whereas the Obp genes clustered on the X chromosome show the opposite trend. These observations may imply a more efficient odorant-transporting system in females, whereas a more active Olfr gene expressing system in males. In addition, we detected the expression of two genes encoding major urinary proteins, which have been proposed to bind and transport pheromones or act as pheromones in mouse urine. This observation suggests a role of main olfactory system (MOS) in pheromone detection, contrary to the view that only accessory olfactory system (AOS) is involved in pheromone detection. This study suggests the sexual differences in detecting environmental odorants in MOS and demonstrates that mRNA-seq provides a powerful tool for detecting genes with low expression levels and with high sequence similarities.
- Published
- 2012
- Full Text
- View/download PDF
32. The use of growth factors and other humoral agents to accelerate and enhance burn wound healing.
- Author
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Ching YH, Sutton TL, Pierpont YN, Robson MC, and Payne WG
- Abstract
Objective: Certain cytokines, especially those known as growth factors, have been demonstrated to mediate or modulate burn wound healing. Experimental and clinical evidence suggests that there are therapeutic advantages to the wound healing process when these agents are utilized. Positive effects have been reported for 4 types of wounds seen in the burn patient: partial-thickness wounds, full-thickness wounds, interstices of meshed skin grafts, and skin graft donor sites., Methods: A comprehensive literature search was performed using the MEDLINE, Ovid, and Web of Science databases to identify pertinent articles regarding growth factors and other cytokines in burns and wound healing., Results: The current knowledge about cytokine growth factors and their potential therapeutic applications in burn wound healing are discussed and reviewed., Conclusions: Platelet-derived growth factor, fibroblast growth factors, epidermal growth factors, transforming growth factor alpha, vascular endothelial growth factor, insulin-like growth factor I, nerve growth factor, transforming growth factor beta, granulocyte-macrophage colony-stimulating factor, and amnion-derived cellular cytokine solution have all been suggested to enhance the rate and quality of healing in 1 or more of these wounds encountered in burn care.
- Published
- 2011
33. High resolution mapping and positional cloning of ENU-induced mutations in the Rw region of mouse chromosome 5.
- Author
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Ching YH, Munroe RJ, Moran JL, Barker AK, Mauceli E, Fennell T, Dipalma F, Lindblad-Toh K, Abcunas LM, Gilmour JF, Harris TP, Kloet SL, Luo Y, McElwee JL, Mu W, Park HK, Rogal DL, Schimenti KJ, Shen L, Shindo M, Shou JY, Stenson EK, Stover PJ, and Schimenti JC
- Subjects
- Animals, Cloning, Molecular, Ethylnitrosourea toxicity, Genes, Lethal, Genetic Complementation Test, Male, Mice, Inbred C57BL, Sequence Deletion, Spermatogenesis genetics, Chromosome Mapping, Chromosomes drug effects, DNA Mutational Analysis, Embryonic Development genetics, Mice genetics, Mutation
- Abstract
Background: Forward genetic screens in mice provide an unbiased means to identify genes and other functional genetic elements in the genome. Previously, a large scale ENU mutagenesis screen was conducted to query the functional content of a ~50 Mb region of the mouse genome on proximal Chr 5. The majority of phenotypic mutants recovered were embryonic lethals., Results: We report the high resolution genetic mapping, complementation analyses, and positional cloning of mutations in the target region. The collection of identified alleles include several with known or presumed functions for which no mutant models have been reported (Tbc1d14, Nol14, Tyms, Cad, Fbxl5, Haus3), and mutations in genes we or others previously reported (Tapt1, Rest, Ugdh, Paxip1, Hmx1, Otoe, Nsun7). We also confirmed the causative nature of a homeotic mutation with a targeted allele, mapped a lethal mutation to a large gene desert, and localized a spermiogenesis mutation to a region in which no annotated genes have coding mutations. The mutation in Tbc1d14 provides the first implication of a critical developmental role for RAB-GAP-mediated protein transport in early embryogenesis., Conclusion: This collection of alleles contributes to the goal of assigning biological functions to all known genes, as well as identifying novel functional elements that would be missed by reverse genetic approaches.
- Published
- 2010
- Full Text
- View/download PDF
34. An allele separating skeletal patterning and spermatogonial renewal functions of PLZF.
- Author
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Ching YH, Wilson LA, and Schimenti JC
- Subjects
- Alleles, Animals, Bone and Bones abnormalities, Infertility, Male genetics, Kruppel-Like Transcription Factors physiology, Male, Mice, Mutation, Missense, Point Mutation, Promyelocytic Leukemia Zinc Finger Protein, Body Patterning genetics, Kruppel-Like Transcription Factors genetics, Skeleton, Spermatozoa physiology
- Abstract
Background: The promyelocytic leukemia zinc finger gene Plzf (also called Zbtb16, Zfp145 or Green's luxoid) belongs to the POZ/zinc-finger family of transcription factors. It contains a BTB/POZ domain that mediates epigenetic transcriptional repression. PLZF is essential for proper skeleton patterning and male germ cell renewal. Two alleles have been reported that display similar phenotypes: a targeted knock-out, and the spontaneous nonsense mutation luxoid., Results: We describe a new ENU induced missense allele of Plzf called seven toes (Plzf7t). Homozygous animals exhibit hindlimb and axial skeleton abnormalities. Whereas the skeletal abnormalities are similar to those of the other alleles, Plzf7t differs in that it does not cause spermatogonial depletion and infertility. Positional cloning revealed a point mutation changing the evolutionarily conserved amino acid Glu44 to Gly, possibly altering the BTB domain's activity., Conclusions: Plzf7t is a separation-of-function allele that reveals differential requirements for domains of PLZF in different developmental milieus.
- Published
- 2010
- Full Text
- View/download PDF
35. Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations.
- Author
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Wilson L, Ching YH, Farias M, Hartford SA, Howell G, Shao H, Bucan M, and Schimenti JC
- Subjects
- Animals, Behavior, Animal physiology, Ethylnitrosourea toxicity, Female, Fertility genetics, Genetic Complementation Test, Gestational Age, Male, Mice, Mice, Inbred C57BL, Mice, Inbred Strains, Mutagenesis, Vestibular Function Tests, Chromosomes drug effects, Embryonic Development genetics, Genes, Lethal, Mutation
- Abstract
A region-specific ENU mutagenesis screen was conducted to elucidate the functional content of proximal mouse Chr 5. We used the visibly marked, recessive, lethal inversion Rump White (Rw) as a balancer in a three-generation breeding scheme to identify recessive mutations within the approximately 50 megabases spanned by Rw. A total of 1003 pedigrees were produced, representing the largest inversion screen performed in mice. Test-class animals, homozygous for the ENU-mutagenized proximal Chr 5 and visibly distinguishable from nonhomozygous littermates, were screened for fertility, hearing, vestibular function, DNA repair, behavior, and dysmorphology. Lethals were identifiable by failure to derive test-class animals within a pedigree. Embryonic lethal mutations (total of 34) were overwhelmingly the largest class of mutants recovered. We characterized them with respect to the time of embryonic death, revealing that most act at midgestation (8.5-10.5) or sooner. To position the mutations within the Rw region and to guide allelism tests, we performed complementation analyses with a set of new and existing chromosomal deletions, as well as standard recombinational mapping on a subset of the mutations. By pooling the data from this and other region-specific mutagenesis projects, we calculate that the mouse genome contains approximately 3479-4825 embryonic lethal genes, or about 13.7%-19% of all genes.
- Published
- 2005
- Full Text
- View/download PDF
36. Mutation in myosin heavy chain 6 causes atrial septal defect.
- Author
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Ching YH, Ghosh TK, Cross SJ, Packham EA, Honeyman L, Loughna S, Robinson TE, Dearlove AM, Ribas G, Bonser AJ, Thomas NR, Scotter AJ, Caves LS, Tyrrell GP, Newbury-Ecob RA, Munnich A, Bonnet D, and Brook JD
- Subjects
- Adult, Amino Acid Substitution, Animals, Cardiac Myosins metabolism, Chick Embryo, Child, Child, Preschool, Female, Genetic Linkage, Heart Septal Defects, Atrial embryology, Humans, Infant, Newborn, Male, Molecular Sequence Data, Myosin Heavy Chains metabolism, Pedigree, T-Box Domain Proteins chemistry, Cardiac Myosins genetics, Heart Septal Defects, Atrial genetics, Mutation, Missense, Myosin Heavy Chains genetics, T-Box Domain Proteins genetics
- Abstract
Atrial septal defect is one of the most common forms of congenital heart malformation. We identified a new locus linked with atrial septal defect on chromosome 14q12 in a large family with dominantly inherited atrial septal defect. The underlying mutation is a missense substitution, I820N, in alpha-myosin heavy chain (MYH6), a structural protein expressed at high levels in the developing atria, which affects the binding of the heavy chain to its regulatory light chain. The cardiac transcription factor TBX5 strongly regulates expression of MYH6, but mutant forms of TBX5, which cause Holt-Oram syndrome, do not. Morpholino knock-down of expression of the chick MYH6 homolog eliminates the formation of the atrial septum without overtly affecting atrial chamber formation. These data provide evidence for a link between a transcription factor, a structural protein and congenital heart disease.
- Published
- 2005
- Full Text
- View/download PDF
37. The mutation spectrum in Holt-Oram syndrome.
- Author
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Cross SJ, Ching YH, Li QY, Armstrong-Buisseret L, Spranger S, Lyonnet S, Bonnet D, Penttinen M, Jonveaux P, Leheup B, Mortier G, Van Ravenswaaij C, and Gardiner CA
- Subjects
- Chromosome Mapping, Chromosomes, Human, Pair 12 genetics, DNA Mutational Analysis, Exons genetics, Female, Genetic Testing, Genetic Variation genetics, Genotype, Heart Block genetics, Heart Septal Defects genetics, Humans, Introns genetics, Male, Molecular Sequence Data, Pedigree, Phenotype, Polymorphism, Single-Stranded Conformational, Syndactyly genetics, Syndrome, Heart Defects, Congenital genetics, Limb Deformities, Congenital genetics, Mutation genetics
- Published
- 2000
- Full Text
- View/download PDF
38. Activation of phosphodiesterase IV during desensitization of the A2A adenosine receptor-mediated cyclic AMP response in rat pheochromocytoma (PC12) cells.
- Author
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Chang YH, Conti M, Lee YC, Lai HL, Ching YH, and Chern Y
- Subjects
- Adenosine pharmacology, Adrenal Gland Neoplasms, Animals, Blotting, Western, Caffeine analogs & derivatives, Caffeine pharmacology, Colforsin analogs & derivatives, Colforsin pharmacology, Cyclic AMP-Dependent Protein Kinases antagonists & inhibitors, Cyclic Nucleotide Phosphodiesterases, Type 4, Enzyme Activation, Enzyme Inhibitors pharmacology, Isoquinolines pharmacology, Kinetics, PC12 Cells, Pheochromocytoma, Phosphodiesterase Inhibitors pharmacology, Phosphoric Diester Hydrolases isolation & purification, Polymerase Chain Reaction, Purinergic P1 Receptor Agonists, Rats, Receptor, Adenosine A2A, Recombinant Proteins biosynthesis, Recombinant Proteins isolation & purification, 3',5'-Cyclic-AMP Phosphodiesterases, 4-(3-Butoxy-4-methoxybenzyl)-2-imidazolidinone pharmacology, Adenosine analogs & derivatives, Cyclic AMP metabolism, Phenethylamines pharmacology, Phosphoric Diester Hydrolases biosynthesis, Receptors, Purinergic P1 physiology, Sulfonamides
- Abstract
Prolonged activation of an A2A adenosine receptor significantly inhibits the cellular response to subsequent stimulation (A2A desensitization). We have reported previously that activation of phosphodiesterase (PDE) contributes to A2A desensitization in PC12 cells. In the present study, we show that a type IV PDE (PDE4)-selective inhibitor (Ro 20-1724) effectively blocks the increase in PDE activity in desensitized cells. Thus, PDE4 appears to be the PDE specifically activated during A2A desensitization in PC12 cells. Prolonged treatment of PC12 cells with an A2A-selective agonist (CGS21680) leads to increased PDE4 activity in a dose-dependent manner, which can be blocked by an A2A-selective antagonist [8-(3-chlorostyryl)caffeine]. Using two PDE4 antibodies, we were able to demonstrate that the levels of two PDE4-immunoreactive bands (72 and 79 kDa) were increased significantly during A2A desensitization. Prolonged treatment with forskolin to elevate intracellular cyclic AMP contents also resulted in increased PDE4 activity. In addition, activation of PDE4 activity during A2A desensitization could be blocked by a protein kinase A (PKA)-selective inhibitor (H89) and was not observed in a PKA-deficient PC12 cell line (A123). Taken together, activation of PDE4 via a cyclic AMP/PKA-dependent pathway plays a critical role in dampening the signal of the A2A receptor.
- Published
- 1997
- Full Text
- View/download PDF
39. Protein kinase C inhibits adenylyl cyclase type VI activity during desensitization of the A2a-adenosine receptor-mediated cAMP response.
- Author
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Lai HL, Yang TH, Messing RO, Ching YH, Lin SC, and Chern Y
- Subjects
- Animals, PC12 Cells, Rats, Adenylyl Cyclases metabolism, Cyclic AMP metabolism, Protein Kinase C metabolism, Receptors, Purinergic P1 metabolism, Signal Transduction
- Abstract
We have previously reported that phosphorylation of adenylyl cyclase type VI (AC6) may result in the suppression of adenylyl cyclase activity during desensitization of the A2a-adenosine receptor-mediated cAMP response (A2a desensitization) in rat pheochromocytoma PC12 cells. In the present study, we demonstrate that protein kinase C (PKC) is responsible for the phosphorylation and inhibition of AC6 during A2a desensitization. Inhibition of PKC by several independent methods markedly blocked the suppression of AC6 during A2a desensitization. Purified PKC from rat brain directly phosphorylated and inhibited recombinant AC6 expressed in Sf21 cells. Substantially lower AC6 activities were also observed in PC12 cells overexpressing PKCdelta or PKCepsilon. Stimulation of A2a-R in PC12 cells under the same conditions as those required for A2a desensitization resulted in an increase in Ca2+-independent PKC activity. Most importantly, exogenous PKC did not further suppress AC6 activity in A2a-desensitized membranes. In vitro PKC phosphorylation of AC6 isolated from A2a-desensitized cells was also profoundly lower than that from control cells, suggesting a specific role for PKC in regulating AC6 during A2a desensitization in PC12 cells. Taken together, our data demonstrate that a calcium-independent, novel PKC inhibits AC6 activity during A2a desensitization in PC12 cells. Independent regulation of AC6 by calcium-independent PKC and by Ca2+ provides an exquisite mechanism for integrating signaling pathways to fine-tune cAMP synthesis.
- Published
- 1997
- Full Text
- View/download PDF
40. Circadian rhythm in the Ca(2+)-inhibitable adenylyl activity of the rat striatum.
- Author
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Chern Y, Lee EH, Lai HL, Wang HL, Lee YC, and Ching YH
- Subjects
- Adenosine analogs & derivatives, Adenosine pharmacology, Adenylyl Cyclase Inhibitors, Animals, Caffeine analogs & derivatives, Caffeine pharmacology, Calcium pharmacology, Colforsin pharmacology, Cyclic AMP metabolism, Guanosine Diphosphate pharmacology, Isoenzymes genetics, Male, Motor Activity drug effects, Phenethylamines pharmacology, Purinergic P1 Receptor Agonists, Rats, Rats, Sprague-Dawley, Adenylyl Cyclases metabolism, Circadian Rhythm physiology, Corpus Striatum enzymology
- Abstract
In the present study, we demonstrate that the Ca(2+)-inhibitable adenylyl cyclase (AC) activity in the striatum exhibits a daily oscillation with a peak occurring around 10:00 h. A circadian fluctuation of the AC activity evoked by an A2a adenosine-selective agonist was also observed. Intrastriatal injection of an A2a-selective adenosine agonist or antagonist during the interval in which the Ca(2+)-inhibitable AC activity was at its peak resulted in a more significant alteration of locomotor activity than those observed at a later interval. The marked circadian variation in the Ca(2+)-inhibitable AC activity in the striatum appears to cause a circadian fluctuation in the action of at least one neuromodulator.
- Published
- 1996
- Full Text
- View/download PDF
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