209 results on '"Chih Hui Yang"'
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2. Origination and selection of ABCDE and AGL6 subfamily MADS-box genes in gymnosperms and angiosperms
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Gangxu Shen, Chih-Hui Yang, Chi-Yen Shen, and Keng-Shiang Huang
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ABCDE gene ,AGL6 ,MADS-box gene ,Evolutionary events ,Phylogenetic analysis ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The morphological diversity of flower organs is closely related to functional divergence within the MADS-box gene family. Bryophytes and seedless vascular plants have MADS-box genes but do not have ABCDE or AGAMOUS-LIKE6 (AGL6) genes. ABCDE and AGL6 genes belong to the subgroup of MADS-box genes. Previous works suggest that the B gene was the first ABCDE and AGL6 genes to emerge in plant but there are no mentions about the probable origin time of ACDE and AGL6 genes. Here, we collected ABCDE and AGL6 gene 381 protein sequences and 361 coding sequences from gymnosperms and angiosperms and reconstructed a complete Bayesian phylogeny of these genes. In this study, we want to clarify the probable origin time of ABCDE and AGL6 genes is a great help for understanding the role of the formation of the flower, which can decipher the forming order of MADS-box genes in the future. Results These genes appeared to have been under purifying selection and their evolutionary rates are not significantly different from each other. Using the Bayesian evolutionary analysis by sampling trees (BEAST) tool, we estimated that: the mutation rate of the ABCDE and AGL6 genes was 2.617 × 10−3 substitutions/site/million years, and that B genes originated 339 million years ago (MYA), CD genes originated 322 MYA, and A genes shared the most recent common ancestor with E/AGL6 296 MYA, respectively. Conclusions The phylogeny of ABCDE and AGL6 genes subfamilies differed. The APETALA1 (AP1 or A gene) subfamily clustered into one group. The APETALA3/PISTILLATA (AP3/PI or B genes) subfamily clustered into two groups: the AP3 and PI clades. The AGAMOUS/SHATTERPROOF/SEEDSTICK (AG/SHP/STK or CD genes) subfamily clustered into a single group. The SEPALLATA (SEP or E gene) subfamily in angiosperms clustered into two groups: the SEP1/2/4 and SEP3 clades. The AGL6 subfamily clustered into a single group. Moreover, ABCDE and AGL6 genes appeared in the following order: AP3/PI → AG/SHP/STK → AGL6/SEP/AP1. In this study, we collected candidate sequences from gymnosperms and angiosperms. This study highlights important events in the evolutionary history of the ABCDE and AGL6 gene families and clarifies their evolutionary path.
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- 2019
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3. Screening of Specific and Common Pathways in Breast Cancer Cell Lines MCF-7 and MDA-MB-231 Treated with Chlorophyllides Composites
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Keng-Shiang Huang, Yi-Ting Wang, Omkar Byadgi, Ting-Yu Huang, Mi-Hsueh Tai, Jei-Fu Shaw, and Chih-Hui Yang
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chlorophyllides ,microarray-based detection ,breast cancer ,MCF-7 ,MDA-MB-231 ,Organic chemistry ,QD241-441 - Abstract
Our previous findings have shown that the chlorophyllides composites have anticancer activities to breast cancer cell lines (MCF-7 and MDA-MB-231). In the present study, microarray gene expression profiling was utilized to investigate the chlorophyllides anticancer mechanism on the breast cancer cells lines. Results showed that chlorophyllides composites induced upregulation of 43 and 56 differentially expressed genes (DEG) in MCF-7 and MDA-MB-231 cells, respectively. In both cell lines, chlorophyllides composites modulated the expression of annexin A4 (ANXA4), chemokine C-C motif receptor 1 (CCR1), stromal interaction molecule 2 (STIM2), ethanolamine kinase 1 (ETNK1) and member of RAS oncogene family (RAP2B). Further, the KEGG annotation revealed that chlorophyllides composites modulated DEGs that are associated with the endocrine system in MCF-7 cells and with the nervous system in MDA-MB-231 cells, respectively. The expression levels of 9 genes were validated by quantitative reverse transcription PCR (RT-qPCR). The expression of CCR1, STIM2, ETNK1, MAGl1 and TOP2A were upregulated in both chlorophyllides composites treated-MCF-7 and MDA-MB-231 cells. The different expression of NLRC5, SLC7A7 and PKN1 provided valuable information for future investigation and development of novel cancer therapy.
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- 2022
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4. Facile production of chlorophyllides using recombinant CrCLH1 and their cytotoxicity towards multidrug resistant breast cancer cell lines.
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Yi-Ping Hsiang, Yi-Ting Wang, Keng-Shiang Huang, Ting-Yu Huang, Mi-Hsueh Tai, Yu-Mei Lin, Chih-Hui Yang, and Jei-Fu Shaw
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Medicine ,Science - Abstract
The purity of chlorophylls plays one of the key role for the production of chlorophyllides. We have designed a facile method for chlorophyll purification by twice solvent extraction. Twice extraction causes the loss of chlorophylls, but the purity of total chlorophylls can be enhanced 182%. Then, the purified chlorophylls can be converted to relatively pure chlorophyllides facilely. The results show that higher purity of chlorophyllides could be obtained when purified chlorophylls (ethanol-hexane extract) was used as starting materials than that of crude chlorophylls (ethanol-only extract). In biocompatibility test, the results showed that the prepared chlorophyllides can be applied as biomaterials. When the prepared chlorophyllides were applied to anticancer tests, they were active both in MCF7 and MDA-MB-231 (multidrug resistant breast cancer cells) cell lines. In addition, the results suggested that the prepared chlorophyllides could be a potential candidate of combination therapy with doxorubicin to breast cancers.
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- 2021
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5. Trends in the Immunomodulatory Effects of Cordyceps militaris: Total Extracts, Polysaccharides and Cordycepin
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Chun-Ting Lee, Keng-Shiang Huang, Jei-Fu Shaw, Jung-Ren Chen, Wen-Shuo Kuo, Gangxu Shen, Alexandru Mihai Grumezescu, Alina Maria Holban, Yi-Ting Wang, Jun-Sheng Wang, Yi-Ping Hsiang, Yu-Mei Lin, Hsiao-Han Hsu, and Chih-Hui Yang
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Cordyceps militaris ,immunomodulation ,polysaccharides ,cordycepin ,type 1 immunity ,type 2 immunity ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Cordyceps militaris (C. militaris) is a fungus with a long history of widespread use in folk medicine, and its biological and medicinal functions are well studied. A crucial pharmacological effect of C. militaris is immunomodulation. In this review, we catalog the immunomodulatory effects of different extracts of C. militaris, namely total extracts, polysaccharides and cordycepin. Total extracts obtained using water or 50% ethyl alcohol and polysaccharides from C. militaris were discovered to tend to promote type 1 immunity, whereas total extracts obtained using 70–80% ethyl alcohol and cordycepin from C. militaris were more likely to promote type 2 immunity. This article is the first to classify the immunomodulatory effects of different extracts of C. militaris. In addition, we discovered a relationship between different segments or extracts and differing types of immunity. This review can provide the readers a comprehensive understanding on the immunomodulatory effects of the precious folk medicine and guidance on its use for both health people and those with an immunodeficiency.
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- 2020
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6. Elizabethkingia bruuniana Infections in Humans, Taiwan, 2005–2017
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Jiun-Nong Lin, Chung-Hsu Lai, Chih-Hui Yang, Yi-Han Huang, and Hsi-Hsun Lin
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Elizabethkingia bruuniana ,Elizabethkingia ,clinical characteristics ,antimicrobial susceptibility ,16S rRNA ,rpoB ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Using 16S rRNA and rpoB gene sequencing, we identified 6 patients infected with Elizabethkingia bruuniana treated at E-Da Hospital (Kaohsiung, Taiwan) during 2005–2017. We describe patient characteristics and the molecular characteristics of the E. bruuniana isolates, including their MICs. Larger-scale studies are needed for more robust characterization of this pathogen.
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- 2019
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7. Chlorophyllides: Preparation, Purification, and Application
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Yi-Ting Wang, Chih-Hui Yang, Keng-Shiang Huang, and Jei-Fu Shaw
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chlorophyllides ,chlorophylls ,chlorophyllase ,Microbiology ,QR1-502 - Abstract
Chlorophyllides can be found in photosynthetic organisms. Generally, chlorophyllides have a-, b-, c-, d-, and f-type derivatives, and all chlorophyllides have a tetrapyrrole structure with a Mg ion at the center and a fifth isocyclic pentanone. Chlorophyllide a can be synthesized from protochlorophyllide a, divinyl chlorophyllide a, or chlorophyll. In addition, chlorophyllide a can be transformed into chlorophyllide b, chlorophyllide d, or chlorophyllide f. Chlorophyllide c can be synthesized from protochlorophyllide a or divinyl protochlorophyllide a. Chlorophyllides have been extensively used in food, medicine, and pharmaceutical applications. Furthermore, chlorophyllides exhibit many biological activities, such as anti-growth, antimicrobial, antiviral, antipathogenic, and antiproliferative activity. The photosensitivity of chlorophyllides that is applied in mercury electrodes and sensors were discussed. This article is the first detailed review dedicated specifically to chlorophyllides. Thus, this review aims to describe the definition of chlorophyllides, biosynthetic routes of chlorophyllides, purification of chlorophyllides, and applications of chlorophyllides.
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- 2021
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8. Comparative Analysis of Gradient Diffusion and Disk Diffusion with Agar Dilution for Susceptibility Testing of Elizabethkingia anophelis
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Chien-Tung Chiu, Chung-Hsu Lai, Yi-Han Huang, Chih-Hui Yang, and Jiun-Nong Lin
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Elizabethkingia anophelis ,antimicrobial susceptibility testing ,agar dilution ,gradient diffusion ,disk diffusion ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Elizabethkingia anophelis has recently emerged as a cause of life-threatening infections. This study compared the results of antimicrobial susceptibility testing (AST) conducted for E. anophelis through different methods. E. anophelis isolates collected between January 2005 and June 2019 were examined for their susceptibility to 14 antimicrobial agents by using disk diffusion, gradient diffusion (Etest; bioMérieux S.A., Marcy l’Etoile, France), and agar dilution methods. The agar dilution method was the reference assay. According to the agar dilution method, the isolates exhibited the highest susceptibility to minocycline (100%), doxycycline (97.6%), rifampin (95.2%), and levofloxacin (78.6%). A very major error rate of >1.5% was observed for nine antibiotics tested using the disk diffusion method. The overall categorical agreement rate between the disk diffusion and agar dilution methods was 74.8%, and ceftazidime, minocycline, levofloxacin, and rifampin met the minimum requirements for discrepancy and agreement rates. The Etest method tended to produce lower log2 minimum inhibitory concentrations for the antibiotics, except for trimethoprim–sulfamethoxazole and rifampin; the method resulted in very major errors for nine antibiotics. The overall essential and categorical agreement rates between the Etest and agar dilution methods were 67.3% and 76.1%, respectively. The Etest method demonstrated acceptable discrepancy and agreement rates for ceftazidime, minocycline, doxycycline, levofloxacin, and rifampin. AST results obtained through the disk diffusion and Etest methods for multiple antibiotics differed significantly from those obtained using the agar dilution method. These two assays should not be a routine alternative for AST for E. anophelis.
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- 2021
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9. Antimicrobial Effects of Minocycline, Tigecycline, Ciprofloxacin, and Levofloxacin against Elizabethkingia anophelis Using In Vitro Time-Kill Assays and In Vivo Zebrafish Animal Models
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Jiun-Nong Lin, Chung-Hsu Lai, Yi-Han Huang, and Chih-Hui Yang
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Elizabethkingia anophelis ,minocycline ,tigecycline ,ciprofloxacin ,levofloxacin ,zebrafish ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Elizabethkingia anophelis is a multidrug-resistant pathogen. This study evaluated the antimicrobial activity of minocycline, tigecycline, ciprofloxacin, and levofloxacin using in vitro time-kill assays and in vivo zebrafish animal models. The E. anophelis strain ED853-49 was arbitrarily selected from a bacterial collection which was concomitantly susceptible to minocycline, tigecycline, ciprofloxacin, and levofloxacin. The antibacterial activities of single agents at 0.5–4 × minimum inhibitory concentration (MIC) and dual-agent combinations at 2 × MIC using time-kill assays were investigated. The therapeutic effects of antibiotics in E. anophelis-infected zebrafish were examined. Both minocycline and tigecycline demonstrated bacteriostatic effects but no bactericidal effect. Minocycline at concentrations ≥2 × MIC and tigecycline at concentrations ≥3 × MIC exhibited a long-standing inhibitory effect for 48 h. Bactericidal effects were observed at ciprofloxacin and levofloxacin concentrations of ≥3 × MIC within 24 h of initial inoculation. Rapid regrowth of E. anophelis occurred after the initial killing phase when ciprofloxacin was used, regardless of the concentration. Levofloxacin treatment at the concentration of ≥2 × MIC consistently resulted in the long-lasting and sustainable inhibition of bacterial growth for 48 h. The addition of minocycline or tigecycline weakened the killing effect of fluoroquinolones during the first 10 h. The minocycline-ciprofloxacin or minocycline–levofloxacin combinations achieved the lowest colony-forming unit counts at 48 h. Zebrafish treated with minocycline or a combination of minocycline and levofloxacin had the highest survival rate (70%). The results of these in vitro and in vivo studies suggest that the combination of minocycline and levofloxacin is the most effective therapy approach for E. anophelis infection.
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- 2021
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10. A Review of Bacteriochlorophyllides: Chemical Structures and Applications
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Chih-Hui Yang, Keng-Shiang Huang, Yi-Ting Wang, and Jei-Fu Shaw
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bacteriochlorophyllides ,bacterochlorophylls ,photosensitizers ,immunosensors ,dye-sensitized solar cell ,Organic chemistry ,QD241-441 - Abstract
Generally, bacteriochlorophyllides were responsible for the photosynthesis in bacteria. Seven types of bacteriochlorophyllides have been disclosed. Bacteriochlorophyllides a/b/g could be synthesized from divinyl chlorophyllide a. The other bacteriochlorophyllides c/d/e/f could be synthesized from chlorophyllide a. The chemical structure and synthetic route of bacteriochlorophyllides were summarized in this review. Furthermore, the potential applications of bacteriochlorophyllides in photosensitizers, immunosensors, influence on bacteriochlorophyll aggregation, dye-sensitized solar cell, heme synthesis and for light energy harvesting simulation were discussed.
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- 2021
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11. Quota-based dynamic network selection for HSPA/UMTS multi-network users.
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Yao-Liang Chung, Zsehong Tsai, and Chih-Hui Yang
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- 2012
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12. Correction: Yang, C.-H., et al. Immobilization of Brassica oleracea Chlorophyllase 1 (BoCLH1) and Candida rugosa Lipase (CRL) in Magnetic Alginate Beads: An Enzymatic Evaluation in the Corresponding Proteins. Molecules 2014, 19, 11800-11815
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Chih-Hui Yang, Chih-Chung Yen, Jyun-Jen Jheng, Chih-Yu Wang, Sheau-Shyang Chen, Pei-Yu Huang, Keng-Shiang Huang, and Jei-Fu Shaw
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n/a ,Organic chemistry ,QD241-441 - Abstract
The authors wish to correct Scheme 1, and Figures 1, 4 and 7 in [1] as follows. Scheme 1 should include phytol and fatty acid. [...]
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- 2015
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13. Immobilization of Brassica oleracea Chlorophyllase 1 (BoCLH1) and Candida rugosa Lipase (CRL) in Magnetic Alginate Beads: An Enzymatic Evaluation in the Corresponding Proteins
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Chih-Hui Yang, Chih-Chung Yen, Jen-Jyun Jheng, Chih-Yu Wang, Sheau-Shyang Chen, Pei-Yu Huang, Keng-Shiang Huang, and Jei-Fu Shaw
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Brassica oleracea chlorophyllase 1 ,Candida rugosa lipase ,immobilization ,alginate ,magnetic beads ,Organic chemistry ,QD241-441 - Abstract
Enzymes have a wide variety of applications in diverse biotechnological fields, and the immobilization of enzymes plays a key role in academic research or industrialization due to the stabilization and recyclability it confers. In this study, we immobilized the Brassica oleracea chlorophyllase 1 (BoCLH1) or Candida rugosa lipase (CRL) in magnetic iron oxide nanoparticles-loaded alginate composite beads. The catalytic activity and specific activity of the BoCLH1 and CRL entrapped in magnetic alginate composite beads were evaluated. Results show that the activity of immobilized BoCLH1 in magnetic alginate composite beads (3.36 ± 0.469 U/g gel) was higher than that of immobilized BoCLH1 in alginate beads (2.96 ± 0.264 U/g gel). In addition, the specific activity of BoCLH1 beads (10.90 ± 1.521 U/mg protein) was higher than that immobilized BoCLH1 in alginate beads (8.52 ± 0.758 U/mg protein). In contrast, the immobilized CRL in magnetic alginate composite beads exhibited a lower enzyme activity (11.81 ± 0.618) than CRL immobilized in alginate beads (94.83 ± 7.929), and the specific activity of immobilized CRL entrapped in magnetic alginate composite beads (1.99 ± 0.104) was lower than immobilized lipase in alginate beads (15.01 ± 1.255). A study of the degradation of magnetic alginate composite beads immersed in acidic solution (pH 3) shows that the magnetic alginate composite beads remain intact in acidic solution for at least 6 h, indicating the maintenance of the enzyme catalytic effect in low-pH environment. Finally, the enzyme immobilized magnetic alginate composite beads could be collected by an external magnet and reused for at least six cycles.
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- 2014
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14. Magnetic Pycnoporus sanguineus-Loaded Alginate Composite Beads for Removing Dye from Aqueous Solutions
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Chih-Hui Yang, Ming-Cheng Shih, Han-Chen Chiu, and Keng-Shiang Huang
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Pycnoporus sanguineus ,malachite green ,dye ,alginate ,iron oxide nanoparticles ,Organic chemistry ,QD241-441 - Abstract
Dye pollution in wastewater is a severe environmental problem because treating water containing dyes using conventional physical, chemical, and biological treatments is difficult. A conventional process is used to adsorb dyes and filter wastewater. Magnetic filtration is an emerging technology. In this study, magnetic Pycnoporus sanguineus-loaded alginate composite beads were employed to remove a dye solution. A white rot fungus, P. sanguineus, immobilized in alginate beads were used as a biosorbent to remove the dye solution. An alginate polymer could protect P. sanguineus in acidic environments. Superparamagnetic nanomaterials, iron oxide nanoparticles, were combined with alginate gels to form magnetic alginate composites. The magnetic guidability of alginate composites and biocompatibility of iron oxide nanoparticles facilitated the magnetic filtration and separation processes. The fungus cells were immobilized in loaded alginate composites to study the influence of the initial dye concentration and pH on the biosorption capacity. The composite beads could be removed easily post-adsorption by using a magnetic filtration process. When the amount of composite beads was varied, the results of kinetic studies of malachite green adsorption by immobilized cells of P. sanguineus fitted well with the pseudo-second-order model. The results indicated that the magnetic composite beads effectively adsorbed the dye solution from wastewater and were environmentally friendly.
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- 2014
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15. Elizabethkingia Infections in Humans: From Genomics to Clinics
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Jiun-Nong Lin, Chung-Hsu Lai, Chih-Hui Yang, and Yi-Han Huang
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Elizabethkingia meningoseptica ,Elizabethkingia miricola ,Elizabethkingia anophelis ,Elizabethkingia bruuniana ,Elizabethkingia ursingii ,Elizabethkingia occulta ,epidemiology ,drug resistance ,genomics ,Biology (General) ,QH301-705.5 - Abstract
The genus Elizabethkingia has recently emerged as a cause of life-threatening infections in humans, particularly in immunocompromised patients. Several new species in the genus Elizabethkingia have been proposed in the last decade. Numerous studies have indicated that Elizabethkingia anophelis, rather than Elizabethkingia meningoseptica, is the most prevalent pathogen in this genus. Matrix-assisted laser desorption/ionization−time of flight mass spectrometry systems with an extended spectrum database could reliably identify E. anophelis and E. meningoseptica, but they are unable to distinguish the remaining species. Precise species identification relies on molecular techniques, such as housekeeping gene sequencing and whole-genome sequencing. These microorganisms are usually susceptible to minocycline but resistant to most β-lactams, β-lactam/β-lactam inhibitors, carbapenems, and aminoglycosides. They often exhibit variable susceptibility to piperacillin, piperacillin-tazobactam, fluoroquinolones, and trimethoprim-sulfamethoxazole. Accordingly, treatment should be guided by antimicrobial susceptibility testing. Target gene mutations are markedly associated with fluoroquinolone resistance. Knowledge on the genomic characteristics provides valuable insights into in these emerging pathogens.
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- 2019
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16. Microfluidic Synthesis of Vinblastine-Loaded Multifunctional Particles for Magnetically Responsive Controlled Drug Release
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Keng-Shiang Huang, Chih-Hui Yang, Ya-Chin Wang, Wei-Ting Wang, and Yen-Yi Lu
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microfluidics ,superparamagnetic ,chitosan ,vinblastine ,drug delivery ,controlled release ,Pharmacy and materia medica ,RS1-441 - Abstract
Vinblastine (VBL) is a major chemotherapeutic drug; however, in some cases, it may cause severe side effects in patients with cancer. Designing a novel VBL pharmaceutical formulation is a crucial and emerging concern among researchers for reducing the use of VBL. This study developed a stimuli-responsive controlled VBL drug release system from magnetically sensitive chitosan capsules. A magnetically responsive controlled drug release system was designed by embedding superparamagnetic iron oxide (SPIO) nanoparticles (NPs) in a chitosan matrix and an external magnet. In addition, droplet microfluidics, which is a novel technique for producing polymer spheres, was used for manufacturing monodispersed chitosan microparticles. The prepared VBL and SPIO NPs-loaded chitosan microparticles were characterized and analyzed using Fourier transform infrared spectroscopy, transmission electron microscopy, scanning electron microscopy, a superconducting quantum interference device, and a biocompatibility test. The drug encapsulation efficiency was 67%−69%. The in vitro drug release test indicated that the VBL could be 100% released from chitosan composite particles in 80−130 min under magnetic stimulation. The pulsatile magnetically triggered tests showed individual and distinctive controlled release patterns. Thus, the timing and dose of VBL release was controllable by an external magnet. The results presume that using a magnetically responsive controlled drug release system offers a valuable opportunity for VBL drug delivery, where the delivery system is an active participant, rather than a passive vehicle, in the optimization of cancer treatment. The proposed actively targeted magnetic drug delivery system offers many advantages over conventional drug delivery systems by improving the precision and timing of drug release, easy operation, and higher compliance for pharmaceutical applications.
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- 2019
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17. A Study of Quota-Based Dynamic Network Selection for Multimode Terminal Users.
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Yao-Liang Chung, Zsehong Tsai, and Chih-Hui Yang
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- 2014
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18. Mutant Prevention Concentrations of Ciprofloxacin and Levofloxacin and Target Gene Mutations of Fluoroquinolones in Elizabethkingia anophelis
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I-Fan Lin, Chung-Hsu Lai, Shang-Yi Lin, Ching-Chi Lee, Nan-Yao Lee, Po-Yu Liu, Chih-Hui Yang, Yi-Han Huang, and Jiun-Nong Lin
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DNA Topoisomerase IV ,Pharmacology ,Levofloxacin ,Microbial Sensitivity Tests ,Anti-Bacterial Agents ,Infectious Diseases ,Susceptibility ,Ciprofloxacin ,DNA Gyrase ,Drug Resistance, Bacterial ,Mutation ,Pharmacology (medical) ,Flavobacteriaceae ,Fluoroquinolones - Abstract
Fluoroquinolones are potentially effective against Elizabethkingia anophelis. We investigated the MIC, mutant prevention concentration (MPC), and target gene mutations of fluoroquinolones in E. anophelis. Eighty-five E. anophelis isolates were collected from five hospitals in Taiwan. The MIC and MPC of ciprofloxacin and levofloxacin were examined for all E. anophelis except 17 isolates, in which ciprofloxacin MPC could not be determined due to drug precipitation caused by overly high drug concentration. Mutations in the quinolone resistance-determining regions of DNA gyrase (GyrA and GyrB) and topoisomerase IV (ParC and ParE) in the clinical isolates and fluoroquinolone-selected mutants were examined. Overall, 23.5% and 71.8% of the isolates tested were susceptible to ciprofloxacin and levofloxacin, respectively. The MPC(50) of ciprofloxacin was 128 mg/L, and the MPC(50) of levofloxacin was 51.2 mg/L. The MPC(50)/MIC(50) ratio for ciprofloxacin was 64, whereas that for levofloxacin was 25.6. The coefficient of determination between the MPC and MIC for ciprofloxacin and levofloxacin was 0.72 and 0.56, respectively, in the linear regression analysis. Preexisting mutations in GyrA (S83I, S83R, and D87Y) were identified in 18 clinical isolates, all of which were resistant to both ciprofloxacin and levofloxacin. Additional amino acid substitutions in GyrA were identified in all ciprofloxacin- and levofloxacin-selected mutants. Furthermore, GyrB alterations (D431N or D431H) were found in nine levofloxacin-treated isolates. Given that maintaining the serum concentrations of fluoroquinolones above MPCs is impossible under presently recommended doses, the selection of mutant E. anophelis strains seems inevitable.
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- 2022
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19. An Aluminum Microfluidic Chip Fabrication Using a Convenient Micromilling Process for Fluorescent Poly(DL-lactide-co-glycolide) Microparticle Generation.
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Yung-Sheng Lin, Chih-Hui Yang, Chih-Yu Wang 0003, Fang-Rong Chang, Keng-Shiang Huang, and Wan-Chen Hsieh
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- 2012
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20. Simulation-Aided Optimal Microfluidic Sorting for Monodispersed Microparticles.
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Ming-Ying Hsu, Chih-Hui Yang, Chih-Yu Wang 0003, and Yung-Sheng Lin
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- 2012
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21. Chemical-Free and Reusable Cellular Analysis: Electrochemical Impedance Spectroscopy with a Transparent ITO Culture Chip.
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Sheng-Yi Hsiao, Dai-Chian Chen, Chih-Hui Yang, Haw-Ming Huang, Yen-Pei Lu, Hui-Shun Huang, Chun-Yen Lin, and Yung-Sheng Lin
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- 2012
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22. A Facile Fabrication of Alginate Microbubbles Using a Gas Foaming Reaction
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Chih-Hui Yang, Yi-Ling Wang, Wan-Ru Chang, Keng-Shiang Huang, and Yung-Sheng Lin
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microbubbles ,alginate ,gas ,particle ,Organic chemistry ,QD241-441 - Abstract
Microbubble particles have been extensively utilized as temporal templates for various biomedical applications. This study proposes a facile strategy to obtain microbubble-containing alginate particles (i.e., microbubbles inside alginate gel particles, called alginate microbubbles). The chemical reaction of sodium bicarbonate and hydrogen peroxide to produce gaseous carbon dioxide and oxygen was utilized to form microbubbles within alginate particles. Uniform alginate particles were obtained by a stable needle-based droplet formation process. Kinetic reaction of gas formation was monitored for 2% alginate particles. The gas formation increased with the concentrations of sodium bicarbonate (1–5 wt%) and hydrogen peroxide (0–36.5 wt%).
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- 2013
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23. A Microfluidic Chip Using Phenol Formaldehyde Resin for Uniform-Sized Polycaprolactone and Chitosan Microparticle Generation
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Wan-Chen Hsieh, Keng-Shiang Huang, Szu-Yu Chen, Chih-Yu Wang, Alexandru Mihai Grumezescu, Yung-Sheng Lin, Chin-Tung Wu, and Chih-Hui Yang
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microfluidics ,emulsion ,droplet ,microparticles ,phenol formaldehyde resin ,polycaprolactone ,chitosan ,Organic chemistry ,QD241-441 - Abstract
This study develops a new solvent-compatible microfluidic chip based on phenol formaldehyde resin (PFR). In addition to its solvent-resistant characteristics, this microfluidic platform also features easy fabrication, organization, decomposition for cleaning, and reusability compared with conventional chips. Both solvent-dependent (e.g., polycaprolactone) and nonsolvent-dependent (e.g., chitosan) microparticles were successfully prepared. The size of emulsion droplets could be easily adjusted by tuning the flow rates of the dispersed/continuous phases. After evaporation, polycaprolactone microparticles ranging from 29.3 to 62.7 μm and chitosan microparticles ranging from 215.5 to 566.3 μm were obtained with a 10% relative standard deviation in size. The proposed PFR microfluidic platform has the advantages of active control of the particle size with a narrow size distribution as well as a simple and low cost process with a high throughput.
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- 2013
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24. Synthesis and Characterization of Oil-Chitosan Composite Spheres
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Wei-Ting Wang, Wei-Jie Weng, Yi-Ching Chang, I-Yin Lin, Chao-Pin Kung, Yung-Sheng Lin, Alexandru Mihai Grumezescu, Chih-Hui Yang, Keng-Shiang Huang, and Chih-Yu Wang
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oil-chitosan composite spheres ,iron oxide ,dual encapsulation ,Organic chemistry ,QD241-441 - Abstract
Oil-chitosan composite spheres were synthesized by encapsulation of sunflower seed oil in chitosan droplets, dropping into NaOH solution and in situ solidification. Hydrophilic materials (i.e., iron oxide nanoparticles) and lipophilic materials (i.e., rhodamine B or epirubicin) could be encapsulated simultaneously in the spheres in a one step process. The diameters of the prepared spheres were 2.48 ± 0.11 mm (pure chitosan spheres), 2.31 ± 0.08 mm (oil-chitosan composites), 1.49 ± 0.15 mm (iron-oxide embedded oil-chitosan composites), and 1.69 ± 0.1 mm (epirubicin and iron oxide encapsulated oil-chitosan composites), respectively. Due to their superparamagnetic properties, the iron-oxide embedded oil-chitosan composites could be guided by a magnet. A lipophilic drug (epirubicin) could be loaded in the spheres with encapsulation rate measured to be 72.25%. The lipophilic fluorescent dye rhodamine B was also loadable in the spheres with red fluorescence being observed under a fluorescence microscope. We have developed a novel approach to an in situ process for fabricating oil-chitosan composite spheres with dual encapsulation properties, which are potential multifunctional drug carriers.
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- 2013
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25. Applications of Advanced Nanotechnology in Stem Cell Research
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Chih-Hui Yang, Yu-Mei Lin, Huang Shu-Ling, Yuan-Yi Lu, Yi-Ting Wang, Yung-Sheng Lin, Chun-Ho Chang, Tsai Ya-Chi, and Keng-Shiang Huang
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Materials science ,General Materials Science ,Nanotechnology ,Stem cell - Abstract
Nanotechnology gives rise to new breakthroughs and developments in various fields. The applications of advanced nanotechnology may resolve the current technical problems encountered in stem cell research. Nanotechnology has gained significant attention in both academic research and the biomedical industry in recent years. In this mini-review article, the progress of nanotechnology-aided stem cell studies has been surveyed, and the in vitro and in vivo applications of nanotechnology have been introduced. The in vitro studies are divided into three categories: isolation, detection, and regulation. The progress of in vivo studies and trends in biomedical applications have also been addressed.
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- 2021
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26. Synthesis of novel four-fused-ring chromeno-benzoxepinones from salicylaldehydes and 1-benzoxepin-5-ones via the oxa-Michael reaction/aldol condensation
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Po-Yuan Chen, Chia-Ying Zhon, Hsing-Ming Chen, Chih-Hui Yang, Tzu-Pin Wang, and Eng-Chi Wang
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Organic chemistry ,QD241-441 - Published
- 2013
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27. Involvement of Aquaporins in the Intense Pulsed Light‐Enhanced Wound Healing in Diabetic Rats
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Hsing-Fu Chen, Li-Ren Chang, Chien-Chung Chen, Po-Wei Huang, Seng-Feng Jeng, Hsiang-Shun Shih, Guan-Ming Feng, Chi-Ming Liu, Jian-An Chen, and Chih-Hui Yang
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Dorsum ,medicine.medical_specialty ,medicine.medical_treatment ,Aquaporin ,Dermatology ,Intense pulsed light ,01 natural sciences ,010309 optics ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Internal medicine ,Diabetes mellitus ,0103 physical sciences ,medicine ,integumentary system ,business.industry ,Streptozotocin ,medicine.disease ,Endocrinology ,Aquaporin 3 ,Surgery ,sense organs ,business ,Wound healing ,medicine.drug - Abstract
Background and objectives We previously demonstrated that intense pulsed light (IPL) irradiation prior to wounding improved the wound healing in rats with diabetes mellitus (DM). Also, we found that IPL upregulated the expression of aquaporin 3 (AQP3), a protein that is crucial for wound healing, in normal rats. This present study aimed to examine the involvement of AQPs in the IPL-enhanced wound healing in diabetic rats. Study design/materials and methods Streptozotocin was used to induce diabetes in Sprague-Dawley rats. Animals were divided into four groups: normal group, DM only group, DM rats with IPL treatment 2 weeks before wounding (DM + IPL-Pre group), and DM rats with concurrent IPL irradiation and wounding (DM + IPL-Con group). Wounds were created on the dorsal skin of rats. The expressions of AQP1, 3, 4, 7, and 9 in the pre-injured skin, periwound, and wound were determined. Results Among all the AQPs analyzed, only the expressions of AQP3 and AQP7 were significantly altered. Unirradiated diabetic rats showed much higher expression level of AQP3 in the regenerating skin compared with normal rats. IPL pretreatment, but not concurrent treatment, attenuated the expression toward the level detected in the normal wounds. In contrast, a lower expression level of AQP7 was noted in the regenerating skin of DM only rats and IPL pretreatment upregulated the expression to a level similar to that in the normal rats. Conclusion The beneficial effect of IPL pretreatment on the wound healing in diabetic rats might involve a mechanism by which the expression of AQPs is regulated. Lasers Surg. Med. © 2020 Wiley Periodicals LLC.
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- 2020
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28. Improvement in the Blood Urea Nitrogen and Serum Creatinine Using New Cultivation of Cordyceps militaris
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Chih-Hui Yang, Wen-Shuo Kuo, Jun-Sheng Wang, Yi-Ping Hsiang, Yu-Mei Lin, Yi-Ting Wang, Fan-Hsuan Tsai, Chun-Ting Lee, Jiun-Hua Chou, Huei-Ya Chang, Lung-Shuo Wang, Shu-Chi Wang, and Keng-Shiang Huang
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Complementary and alternative medicine ,Article Subject ,urologic and male genital diseases - Abstract
Background. Chronic kidney disease (CKD) is a critical public health issue with a huge financial burden for both patients and society worldwide. Unfortunately, there are currently no efficacious therapies to prevent or delay the progression of end-stage renal disease (ESRD). Traditional Chinese medicine practices have shown that Cordyceps militaris (C. militaris) mycelia have a variety of pharmacologically useful properties, including antitumor, immunomodulation, and hepatoprotection. However, the effect of mycelial C. militaris on CKD remains unclear. Methods. Here, we investigated the effects of C. militaris mycelia on mice with CKD using four types of media: HKS, HKS with vitamin A (HKS + A), CM, and CM with vitamin A (CM + A). Results. The results at day 10 revealed that the levels of blood urea nitrogen (BUN) were significantly lower in the HKS (41%), HKS + A (41%), and CM + A (34%) groups compared with those in the corresponding control groups (nephrectomic mice). The level of serum creatinine in the HKS + A group decreased by 35% at day 10, whereas the levels in the HKS and CM + A groups decreased only by 14% and 13%, respectively, on day 30. Taken together, this is the first report using four new media (HKS, HKS + A, CM, and CM + A medium) for C. militaris mycelia. Each medium of mycelial C. militaris on CKD exhibits specific effect on BUN, serum creatinine, body weight, total protein, and uric acid. Conclusions. Taken together, this is the first report using four new media (HKS, HKS + A, CM, and CM + A medium) for C. militaris mycelia. Each medium of mycelial C. militaris on CKD exhibits specific effects on BUN, serum creatinine, body weight, total protein, and uric acid. We concluded that treatment with C. militaris mycelia cultured in HKS or CM + A medium could potentially prevent the deterioration of kidney function in mice with CKD.
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- 2022
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29. Improvement in the Blood Urea Nitrogen and Serum Creatinine Using New Cultivation of
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Chih-Hui, Yang, Wen-Shuo, Kuo, Jun-Sheng, Wang, Yi-Ping, Hsiang, Yu-Mei, Lin, Yi-Ting, Wang, Fan-Hsuan, Tsai, Chun-Ting, Lee, Jiun-Hua, Chou, Huei-Ya, Chang, Lung-Shuo, Wang, Shu-Chi, Wang, and Keng-Shiang, Huang
- Abstract
Chronic kidney disease (CKD) is a critical public health issue with a huge financial burden for both patients and society worldwide. Unfortunately, there are currently no efficacious therapies to prevent or delay the progression of end-stage renal disease (ESRD). Traditional Chinese medicine practices have shown thatHere, we investigated the effects ofThe results at day 10 revealed that the levels of blood urea nitrogen (BUN) were significantly lower in the HKS (41%), HKS + A (41%), and CM + A (34%) groups compared with those in the corresponding control groups (nephrectomic mice). The level of serum creatinine in the HKS + A group decreased by 35% at day 10, whereas the levels in the HKS and CM + A groups decreased only by 14% and 13%, respectively, on day 30. Taken together, this is the first report using four new media (HKS, HKS + A, CM, and CM + A medium) forTaken together, this is the first report using four new media (HKS, HKS + A, CM, and CM + A medium) for
- Published
- 2021
30. Facile synthesis of highly tunable monodispersed calcium hydroxide composite particles by using a two-step ion exchange reaction
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Chih-Hui Yang, Yi-Ching Chang, Huang Wei-Jie, Pei-Fan Chen, Hsin-Yi Wen, Wen Shuo Kuo, Yi-Ting Wang, Keng-Shiang Huang, Ya-Chin Wang, Yun-Chul Lin, Yu-Mei Lin, and Ta-Chen Wang
- Subjects
Calcium hydroxide ,Materials science ,Ion exchange ,General Chemical Engineering ,Composite number ,Dispersity ,Microfluidics ,030206 dentistry ,02 engineering and technology ,General Chemistry ,021001 nanoscience & nanotechnology ,Ion ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Adsorption ,Template ,chemistry ,Chemical engineering ,0210 nano-technology - Abstract
“Calcium hydroxide [Ca(OH)2]” is a medicament frequently used for antimicrobial purposes in endodontic procedures, or it is used as a toxic-waste adsorbent in industry. Ca(OH)2 particles produced through conventional methods are size untunable and have a wide size distribution and polygonal shape. In this paper, a novel and facile approach involving template-mediated synthesis and two-step ion exchange is proposed for uniform size Ca(OH)2 composite particles generation. “Sodium-alginate (Na-alginate)” was used as a precursor, and monodisperse Na-alginate emulsions were formed through needle droplet or droplet microfluidic technology. After the first ion exchange step with the Ca2+ ions, “calcium-alginate (Ca-alginate)” particles were obtained. The Ca-alginate particles were intermediate reaction products and were designed to be the templates for ensuring the spherical shape and size of products. The OH− ions were used for the second ion exchange step to fabricate Ca(OH)2 composite particles. The results revealed that the Ca(OH)2 composite particles were size tunable, had a spherical shape, and were monodisperse (with a relative standard deviation of less than 8%). The 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assay revealed that the Ca(OH)2 composite particles were potential biocompatible materials.
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- 2020
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31. Cytotoxic Effects of Chlorophyllides in Ethanol Crude Extracts from Plant Leaves
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Chih-Hui Yang, Mi-Hsueh Tai, Jei-Fu Shaw, Ting-Yu Huang, Ru-Han Sie, and Yi-Ting Wang
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0303 health sciences ,Chlorophyllase ,Antioxidant ,Article Subject ,Chemistry ,DPPH ,medicine.medical_treatment ,Chlorophyllin ,food and beverages ,lcsh:Other systems of medicine ,lcsh:RZ201-999 ,Hep G2 ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Complementary and alternative medicine ,030220 oncology & carcinogenesis ,medicine ,MTT assay ,Food science ,Cytotoxicity ,IC50 ,Research Article ,030304 developmental biology - Abstract
Chlorophyllide (chlide) is a natural catabolic product of chlorophyll (Chl), produced through the activity of chlorophyllase (chlase). The growth inhibitory and antioxidant effects of chlide from different plant leaf extracts have not been reported. The aim of this study is to demonstrate that chlide in crude extracts from leaves has the potential to exert cytotoxic effects on cancer cell lines. The potential inhibitory and antioxidant effects of chlide in crude extracts from 10 plant leaves on breast cancer cells (MCF7 and MDA-MB-231), hepatocellular carcinoma cells (Hep G2), colorectal adenocarcinoma cells (Caco2), and glioblastoma cells (U-118 MG) were studied using MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide) and DPPH (1,1-diphenyl-2-picrylhydrazyl) assays. The results of the MTT assay showed that chlide in crude extracts from sweet potato were the most effective against all cancer cell lines tested. U-118 MG cells were the most sensitive, while Caco2 cells were the most resistant to the tested crude extracts. The cytotoxic effects of chlide and Chl in crude extracts from sweet potato and of commercial chlorophyllin (Cu-chlin), in descending order, were as follows: chlide > Chl > Cu-chlin. Notably, the IC50 of sweet potato in U-118 MG cells was 45.65 μg/mL while those of Chl and Cu-chlin exceeded 200 μg/mL. In the DPPH assay, low concentrations (100 μg/mL) of chlide and Cu-chlin from crude extracts of sweet potato presented very similar radical scavenging activity to vitamin B2. The concentration of chlide was negatively correlated with DPPH activity. The current study was the first to demonstrate that chlide in crude extracts from leaves have potential cytotoxicity in cancer cell lines. Synergism between chlide and other compounds from leaf crude extracts may contribute to its cytotoxicity.
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- 2019
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32. A Novel Continuous Extrusion Process to Fabricate Wedge-Shaped Light Guide Plates
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Wen-Tse Hsiao, Jui-Chang Lin, Keng-Shiang Huang, Chih-Hui Yang, Alexandru Mihai Grumezescu, Shih-Feng Tseng, and Yung-Sheng Lin
- Subjects
Chemical technology ,TP1-1185 - Abstract
Backlight modules are key components in thin-film transistor liquid crystal displays (TFT-LCD). Among the components of a backlight module, the light guide plate (LGP) plays the most important role controlling the light projected to the eyes of users. A wedge-shaped LGP, with its asymmetrical structure, is usually fabricated by an injection proces, but the fabrication time of this process is long. This study proposes a continuous extrusion process to fabricate wedge-shaped LGPs. This continuous process has advantages for mass production. Besides a T-die and rollers, this system also has an in situ monitor of the melt-bank that forms during the extrusion process, helping control the plate thickness. Results show that the melt bank has a close relationship with the plate thickness. The temperature of the bottom heater and roller was adjusted to reduce the surface deformation of the wedge-shaped plate. This continuous extrusion system can successfully manufacture wedge-shaped LGPs for mass production.
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- 2013
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33. Amino-Functionalized Nitrogen-Doped Graphene-Quantum-Dot-Based Nanomaterials with Nitrogen and Amino-Functionalized Group Content Dependence for Highly Efficient Two-Photon Bioimaging
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Ping Ching Wu, Chih Hui Yang, Keng-Shiang Huang, Chia Yuan Chang, Wen Shuo Kuo, Jui Chang Liu, and Yu Ting Shao
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Polymers ,Quantum yield ,graphene quantum dot ,02 engineering and technology ,Photochemistry ,01 natural sciences ,Nanomaterials ,law.invention ,Polystyrene sulfonate ,lcsh:Chemistry ,chemistry.chemical_compound ,X-Ray Diffraction ,law ,two-photon photoproperties ,lcsh:QH301-705.5 ,Spectroscopy ,General Medicine ,021001 nanoscience & nanotechnology ,Graphene quantum dot ,Molecular Imaging ,Computer Science Applications ,Graphite ,0210 nano-technology ,Materials science ,Nitrogen ,Conjugated system ,010402 general chemistry ,Article ,Catalysis ,Cell Line ,Inorganic Chemistry ,Imaging, Three-Dimensional ,Quantum Dots ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,Photons ,noninvasive three-dimensional imaging ,Graphene ,Spectrum Analysis ,Organic Chemistry ,technology, industry, and agriculture ,ultralow two-photon excitation power ,Nanostructures ,0104 chemical sciences ,chemistry ,lcsh:Biology (General) ,lcsh:QD1-999 ,Quantum dot ,Luminescence ,two-photon autofluorescence - Abstract
We fabricated nanomaterials comprising amino-functionalized and nitrogen-doped graphene quantum dots (amino-N-GQDs) and investigated their photostability and intrinsic luminescence in the near-infrared spectrum to determine their suitability as contrast agents in two-photon imaging (TPI). We observed that amino-N-GQDs with a higher amount of bonded nitrogen and amino-functionalized groups (6.2%) exhibited superior two-photon properties to those with a lower amount of such nitrogen and groups (4.9%). These materials were conjugated with polymers containing sulfur (polystyrene sulfonate, PSS) and nitrogen atoms (polyethylenimine, PEI), forming amino-N-GQD&ndash, PSS&ndash, PEI specimens (amino-N-GQD-polymers). The polymers exhibited a high quantum yield, remarkable stability, and notable two-photon properties and generated no reactive oxygen species, rendering them excellent two-photon contrast agents for bioimaging. An antiepidermal growth factor receptor (AbEGFR) was used for labeling to increase specificity. Two-photon imaging (TPI) of amino-N-GQD (6.2%)-polymer-AbEGFR-treated A431 cancer cells revealed remarkable brightness, intensity, and signal-to-noise ratios for each observation at a two-photon excitation power of 16.9 nJ pixel&minus, 1 under 30 scans and a three-dimensional (3D) depth of 105 µ, m, indicating that amino-N-GQD (6.2%)-polymer-AbEGFR-treated cells can achieve two-photon luminescence with 71 times less power required for two-photon autofluorescence (1322.8 nJ pixel&minus, 1 with 500 scans) of similar intensity. This economy can minimize photodamage to cells, rendering amino-N-GQD-polymers suitable for noninvasive 3D bioimaging.
- Published
- 2020
34. Microfluidic synthesis of microfibers for magnetic-responsive controlled drug release and cell culture.
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Yung-Sheng Lin, Keng-Shiang Huang, Chih-Hui Yang, Chih-Yu Wang, Yuh-Shyong Yang, Hsiang-Chen Hsu, Yu-Ju Liao, and Chia-Wen Tsai
- Subjects
Medicine ,Science - Abstract
This study demonstrated the fabrication of alginate microfibers using a modular microfluidic system for magnetic-responsive controlled drug release and cell culture. A novel two-dimensional fluid-focusing technique with multi-inlets and junctions was used to spatiotemporally control the continuous laminar flow of alginate solutions. The diameter of the manufactured microfibers, which ranged from 211 µm to 364 µm, could be well controlled by changing the flow rate of the continuous phase. While the model drug, diclofenac, was encapsulated into microfibers, the drug release profile exhibited the characteristic of a proper and steady release. Furthermore, the diclofenac release kinetics from the magnetic iron oxide-loaded microfibers could be controlled externally, allowing for a rapid drug release by applying a magnetic force. In addition, the successful culture of glioblastoma multiforme cells in the microfibers demonstrated a good structural integrity and environment to grow cells that could be applied in drug screening for targeting cancer cells. The proposed microfluidic system has the advantages of ease of fabrication, simplicity, and a fast and low-cost process that is capable of generating functional microfibers with the potential for biomedical applications, such as drug controlled release and cell culture.
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- 2012
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35. Facile synthesis of radial-like macroporous superparamagnetic chitosan spheres with in-situ co-precipitation and gelation of ferro-gels.
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Chih-Hui Yang, Chih-Yu Wang, Keng-Shiang Huang, Chen-Sheng Yeh, Andrew H-J Wang, Wei-Ting Wang, and Ming-Yu Lin
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Medicine ,Science - Abstract
Macroporous chitosan spheres encapsulating superparamagnetic iron oxide nanoparticles were synthesized by a facile and effective one-step fabrication process. Ferro-gels containing ferrous cations, ferric cations and chitosan were dropped into a sodium hydroxide solution through a syringe pump. In addition, a sodium hydroxide solution was employed for both gelation (chitosan) and co-precipitation (ferrous cations and ferric cations) of the ferro-gels. The results showed that the in-situ co-precipitation of ferro-ions gave rise to a radial morphology with non-spheroid macro pores (large cavities) inside the chitosan spheres. The particle size of iron oxide can be adjusted from 2.5 nm to 5.4 nm by tuning the concentration of the sodium hydroxide solution. Using Fourier Transform Infrared Spectroscopy and X-ray diffraction spectra, the synthesized nanoparticles were illustrated as Fe(3)O(4) nanoparticles. In addition, the prepared macroporous chitosan spheres presented a super-paramagnetic behaviour at room temperature with a saturation magnetization value as high as ca. 18 emu/g. The cytotoxicity was estimated using cell viability by incubating doses (0∼1000 µg/mL) of the macroporous chitosan spheres. The result showed good viability (above 80%) with alginate chitosan particles below 1000 µg/mL, indicating that macroporous chitosan spheres were potentially useful for biomedical applications in the future.
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- 2012
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36. Inhibitory Effects of Far-Infrared Irradiation Generated by Ceramic Material on Murine Melanoma Cell Growth
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Ting-Kai Leung, Chin-Feng Chan, Ping-Shan Lai, Chih-Hui Yang, Chia-Yen Hsu, and Yung-Sheng Lin
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Renewable energy sources ,TJ807-830 - Abstract
The biological effects of specific wavelengths, so-called “far-infrared radiation” produced from ceramic material (cFIR), on whole organisms are not yet well understood. In this study, we investigated the biological effects of cFIR on murine melanoma cells (B16-F10) at body temperature. cFIR irradiation treatment for 48 h resulted in an 11.8% decrease in the proliferation of melanoma cells relative to the control. Meanwhile, incubation of cells with cFIR for 48 h significantly resulted in 56.9% and 15.7% decreases in the intracellular heat shock protein (HSP)70 and intracellular nitric oxide (iNO) contents, respectively. Furthermore, cFIR treatment induced 6.4% and 12.3% increases in intracellular reactive oxygen species stained by 5-(and 6)-carboxyl-2′,7′-dichlorodihydrofluorescein diacetate and dihydrorhodamine 123, respectively. Since malignant melanomas are known to have high HSP70 expression and iNO activity, the suppressive effects of cFIR on HSP70 and NO may warrant future interest in antitumor applications.
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- 2012
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37. The Development of Peptide-based Antimicrobial Agents against Dengue Virus
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Ta-Chen Wang, Yu-Mei Lin, Chun-Ting Lee, Yun-Chung Kao, Keng-Shiang Huang, Yen-Wei Huang, and Chih-Hui Yang
- Subjects
0301 basic medicine ,030103 biophysics ,viruses ,Population ,antimicrobial agents ,Dengue Vaccines ,Dengue virus ,Virus Replication ,medicine.disease_cause ,Antiviral Agents ,Biochemistry ,Article ,Dengue fever ,Dengue ,03 medical and health sciences ,Viral entry ,Drug Discovery ,peptide vaccine ,medicine ,Animals ,Humans ,Molecular Targeted Therapy ,Pharmaceutical sciences ,education ,Molecular Biology ,clinical trials ,Vaccines, Synthetic ,education.field_of_study ,dengue virus ,business.industry ,peptide drug ,Cell Biology ,General Medicine ,medicine.disease ,Antimicrobial ,Virology ,Clinical trial ,Vaccines, Subunit ,Peptide vaccine ,Peptides ,business ,Antimicrobial Cationic Peptides - Abstract
Dengue fever has become an imminent threat to international public health because of global warming and climate change. The World Health Organization proclaimed that more than 50% of the world’s population is at risk of dengue virus (DENV) infection. Therefore, developing a clinically ap-proved vaccine and effective therapeutic remedy for treating dengue fever is imperative. Peptide drug de-velopment has become a novel pharmaceutical research field. This article reviews various peptides-based antimicrobial agents targeting three pathways involved in the DENV lifecycle. Specifically, they are peptide vaccines from immunomodulation, peptide drugs that inhibit virus entry, and peptide drugs that interfere with viral replication. Many antiviral peptide studies against DENV have been conducted in animal model trials, and progression to clinical trials for these promising peptide drugs is anticipated.
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- 2018
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38. Elizabethkingia bruuniana Infections in Humans, Taiwan, 2005–2017
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Chih-Hui Yang, Jiun-Nong Lin, Yi-Han Huang, Chung-Hsu Lai, and Hsi-Hsun Lin
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Male ,Elizabethkingia bruuniana Infections in Humans, Taiwan, 2005–2017 ,Epidemiology ,Elizabethkingia ,lcsh:Medicine ,Elizabethkingia bruuniana ,phylogeny ,quinolone resistance–determining regions ,drug susceptibility ,0302 clinical medicine ,Flavobacteriaceae Infections ,RNA, Ribosomal, 16S ,030212 general & internal medicine ,bacteria ,Pathogen ,clinical characteristics ,Aged, 80 and over ,biology ,DNA–DNA hybridization ,average nucleotide identity ,DNA-Directed RNA Polymerases ,Middle Aged ,Anti-Bacterial Agents ,Infectious Diseases ,Female ,Flavobacteriaceae ,Microbiology (medical) ,fluoroquinolone resistance ,food.ingredient ,030231 tropical medicine ,Taiwan ,Microbial Sensitivity Tests ,History, 21st Century ,DNA sequencing ,antimicrobial susceptibility ,Microbiology ,lcsh:Infectious and parasitic diseases ,03 medical and health sciences ,food ,Antibiotic resistance ,Research Letter ,Humans ,lcsh:RC109-216 ,antimicrobial resistance ,16S rRNA ,Aged ,lcsh:R ,Sequence Analysis, DNA ,rpoB ,biology.organism_classification ,16S ribosomal RNA ,Bacteria - Abstract
Using 16S rRNA and rpoB gene sequencing, we identified 6 patients infected with Elizabethkingia bruuniana treated at E-Da Hospital (Kaohsiung, Taiwan) during 2005-2017. We describe patient characteristics and the molecular characteristics of the E. bruuniana isolates, including their MICs. Larger-scale studies are needed for more robust characterization of this pathogen.
- Published
- 2019
39. Synthesis of Magnetite Nanoparticles through a Lab-On-Chip Device
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Alexandra Cătălina Bîrcă, Keng-Shiang Huang, Alexandru Mihai Grumezescu, Chih-Hui Yang, Cristina Chircov, Adrian Ionuț Nicoară, Bogdan Stefan Vasile, Ecaterina Andronescu, and Ovidiu Oprea
- Subjects
Technology ,Materials science ,microfluidics ,Nanoparticle ,Context (language use) ,Nanotechnology ,Article ,law.invention ,Nanomaterials ,chemistry.chemical_compound ,law ,General Materials Science ,Thermal stability ,Surface charge ,Magnetite ,Microscopy ,QC120-168.85 ,QH201-278.5 ,iron oxide nanoparticles ,Lab-on-a-chip ,Engineering (General). Civil engineering (General) ,TK1-9971 ,lab-on-chip ,magnetite nanoparticles ,Descriptive and experimental mechanics ,chemistry ,Electrical engineering. Electronics. Nuclear engineering ,TA1-2040 ,Iron oxide nanoparticles - Abstract
Magnetite nanoparticles (MNPs) represent one of the most intensively studied types of iron oxide nanoparticles in various fields, including biomedicine, pharmaceutics, bioengineering, and industry. Since their properties in terms of size, shape, and surface charge significantly affects their efficiency towards the envisaged application, it is fundamentally important to develop a new synthesis route that allows for the control and modulation of the nanoparticle features. In this context, the aim of the present study was to develop a new method for the synthesis of MNPs. Specifically, a microfluidic lab-on-chip (LoC) device was used to obtain MNPs with controlled properties. The study investigated the influence of iron precursor solution concentration and flowed onto the final properties of the nanomaterials. The synthesized MNPs were characterized in terms of size, morphology, structure, composition, and stability. Results proved the formation of magnetite as a single mineral phase. Moreover, the uniform spherical shape and narrow size distribution were demonstrated. Optimal characteristics regarding MNPs crystallinity, uniformity, and thermal stability were obtained at higher concentrations and lower flows. In this manner, the potential of the LoC device is a promising tool for the synthesis of nanomaterials by ensuring the necessary uniformity for all final applications.
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- 2021
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40. Genomic features, phylogenetic relationships, and comparative genomics of Elizabethkingia anophelis strain EM361-97 isolated in Taiwan
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Hsi-Hsun Lin, Chung-Hsu Lai, Yi-Han Huang, Jiun-Nong Lin, and Chih-Hui Yang
- Subjects
0301 basic medicine ,Virulence Factors ,030106 microbiology ,Taiwan ,lcsh:Medicine ,Genomics ,Biology ,medicine.disease_cause ,Communicable Diseases, Emerging ,Genome ,Article ,03 medical and health sciences ,Flavobacteriaceae Infections ,Phylogenetics ,medicine ,Humans ,lcsh:Science ,Phylogeny ,Comparative genomics ,Genetics ,Whole genome sequencing ,Multidisciplinary ,Whole Genome Sequencing ,Phylogenetic tree ,lcsh:R ,Molecular Sequence Annotation ,030104 developmental biology ,Sister group ,Elizabethkingia anophelis ,lcsh:Q ,Flavobacteriaceae ,Genome, Bacterial - Abstract
Elizabethkingia anophelis has become an emerging infection in humans. Recent research has shown that previous reports of E. meningoseptica infections might in fact be caused by E. anophelis. We aimed to investigate the genomic features, phylogenetic relationships, and comparative genomics of this emerging pathogen. Elizabethkingia anophelis strain EM361-97 was isolated from the blood of a cancer patient in Taiwan. The total length of the draft genome was 4,084,052 bp. The whole-genome analysis identified the presence of a number of antibiotic resistance genes, which corresponded with the antibiotic susceptibility phenotype of this strain. Based on the average nucleotide identity, the phylogenetic analysis revealed that E. anophelis EM361-97 was a sister group to E. anophelis FMS-007, which was isolated from a patient with T-cell non-Hodgkin’s lymphoma in China. Knowledge of the genomic characteristics and comparative genomics of E. anophelis will provide researchers and clinicians with important information to understand this emerging microorganism.
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- 2017
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41. Digital games for learning energy conservation: A study of impacts on motivation, attention, and learning outcomes
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Chih-Hui Yang, Shen-Li Fu, Keng-Shiang Huang, and Szu-Wei Chen
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Cooperative learning ,020205 medical informatics ,Multimedia ,05 social sciences ,Educational technology ,050301 education ,02 engineering and technology ,Open learning ,computer.software_genre ,Experiential learning ,Learning sciences ,Education ,Synchronous learning ,Blended learning ,Active learning ,0202 electrical engineering, electronic engineering, information engineering ,Mathematics education ,Psychology ,0503 education ,computer - Abstract
Knowledge associated with energy conservation is important but it may appear difficult and monotonous to students due to the presence of jargon and complex scientific concepts. This research created two digital question-and-answer games and compared them with a traditional paper-and-pencil learning method to explore how different learning approaches would affect college students’ learning for knowledge of energy conservation. This research conducted a between-subject experiment with random assignment to examine short-term effects of the three different learning methods on motivation, attention, and learning outcomes. The results revealed that participants who played the digital game equipped with more cartoon-style, animated, and interactive features scored significantly higher than the lower-complexity digital game group as well as the traditional paper-and-pencil group on the learning outcome tests. Moreover, in contrast to many previous studies, use of these digital games was not found to affec...
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- 2017
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42. Comparative Genomics of 86 Whole-Genome Sequences in the Six Species of the Elizabethkingia Genus Reveals Intraspecific and Interspecific Divergence
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Jiun-Nong Lin, Yi-Han Huang, Chung-Hsu Lai, Chih-Yu Liang, and Chih-Hui Yang
- Subjects
0301 basic medicine ,food.ingredient ,Virulence Factors ,Elizabethkingia ,030106 microbiology ,lcsh:Medicine ,Biology ,Genome ,Article ,Evolution, Molecular ,03 medical and health sciences ,food ,Species Specificity ,Phylogenetics ,Drug Resistance, Bacterial ,Computer Simulation ,KEGG ,lcsh:Science ,Bacterial genomics ,Phylogeny ,Comparative genomics ,Multidisciplinary ,Phylogenetic tree ,Base Sequence ,Whole Genome Sequencing ,lcsh:R ,Pan-genome ,Genetic Variation ,Genomics ,ComputingMethodologies_PATTERNRECOGNITION ,030104 developmental biology ,Evolutionary biology ,GenBank ,lcsh:Q ,Bacterial infection ,Flavobacteriaceae ,Genome, Bacterial - Abstract
Bacteria of the genus Elizabethkingia are emerging infectious agents that can cause infection in humans. The number of published whole-genome sequences of Elizabethkingia is rapidly increasing. In this study, we used comparative genomics to investigate the genomes of the six species in the Elizabethkingia genus, namely E. meningoseptica, E. anophelis, E. miricola, E. bruuniana, E. ursingii, and E. occulta. In silico DNA–DNA hybridization, whole-genome sequence-based phylogeny, pan genome analysis, and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed, and clusters of orthologous groups were evaluated. Of the 86 whole-genome sequences available in GenBank, 21 were complete genome sequences and 65 were shotgun sequences. In silico DNA–DNA hybridization clearly delineated the six Elizabethkingia species. Phylogenetic analysis confirmed that E. bruuniana, E. ursingii, and E. occulta were closer to E. miricola than to E. meningoseptica and E. anophelis. A total of 2,609 clusters of orthologous groups were identified among the six type strains of the Elizabethkingia genus. Metabolism-related clusters of orthologous groups accounted for the majority of gene families in KEGG analysis. New genes were identified that substantially increased the total repertoire of the pan genome after the addition of 86 Elizabethkingia genomes, which suggests that Elizabethkingia has shown adaptive evolution to environmental change. This study presents a comparative genomic analysis of Elizabethkingia, and the results of this study provide knowledge that facilitates a better understanding of this microorganism.
- Published
- 2019
43. Differences in Clinical Manifestations, Antimicrobial Susceptibility Patterns, and Mutations of Fluoroquinolone Target Genes between Chryseobacterium gleum and Chryseobacterium indologenes
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Chung-Hsu Lai, Chih-Hui Yang, Jiun-Nong Lin, and Yi-Han Huang
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Chryseobacterium indologenes ,Ceftazidime ,Microbial Sensitivity Tests ,Chryseobacterium gleum ,Tigecycline ,Drug resistance ,Chryseobacterium ,Microbiology ,03 medical and health sciences ,Levofloxacin ,RNA, Ribosomal, 16S ,medicine ,Pharmacology (medical) ,030304 developmental biology ,Pharmacology ,0303 health sciences ,biology ,030306 microbiology ,business.industry ,biology.organism_classification ,Infectious Diseases ,DNA Gyrase ,Susceptibility ,Mutation ,business ,Fluoroquinolones ,Piperacillin ,medicine.drug - Abstract
Chryseobacterium infections are uncommon, and previous studies have revealed that Chryseobacterium gleum is frequently misidentified as Chryseobacterium indologenes. We aimed to explore the differences in clinical manifestations and antimicrobial susceptibility patterns between C. gleum and C. indologenes. The database of a clinical microbiology laboratory was searched to identify patients with Chryseobacterium infections between 2005 and 2017. Species were reidentified using 16S rRNA gene sequencing, and patients with C. gleum and C. indologenes infections were included in the study. A total of 42 C. gleum and 84 C. indologenes isolates were collected from consecutive patients. A significant increase in C. indologenes incidence was observed. C. gleum was significantly more associated with bacteremia than C. indologenes. Patients with C. gleum infections had more comorbidities of malignancy and liver cirrhosis than those with C. indologenes infections. The overall case fatality rate was 19.8%. Independent risk factors for mortality were female sex and C. indologenes infection. These isolates were most susceptible to minocycline (73%), followed by trimethoprim-sulfamethoxazole (47.6%), tigecycline (34.1%), and levofloxacin (32.5%). C. gleum exhibited a significantly higher rate of susceptibility than C. indologenes to piperacillin, piperacillin-tazobactam, ceftazidime, tigecycline, and levofloxacin. Alterations in DNA gyrase subunit A were identified to be associated with fluoroquinolone resistance in C. indologenes. No nonsynonymous substitutions were observed in the quinolone resistance-determining regions (QRDRs) of C. gleum. Differences in epidemiology, clinical manifestations, and antimicrobial susceptibility patterns exist between C. gleum and C. indologenes. Additional investigations are needed to explore the significance of these differences.
- Published
- 2019
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44. Correction: Jiun-Nong Lin; Chung-Hsu Lai; Chih-Hui Yang and Yi-Han Huang. Comparison of Clinical Manifestations, Antimicrobial Susceptibility Patterns, and Mutations of Fluoroquinolone Target Genes between Elizabethkingia meningoseptica and Elizabethkingia anophelis Isolated in Taiwan. Journal of Clinical Medicine 2018, 7, 538
- Author
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Chung-Hsu Lai, Jiun-Nong Lin, Chih-Hui Yang, and Yi-Han Huang
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Genetics ,biology ,business.industry ,lcsh:R ,Antimicrobial susceptibility ,Correction ,lcsh:Medicine ,General Medicine ,medicine.disease_cause ,biology.organism_classification ,n/a ,Elizabethkingia anophelis ,Medicine ,Elizabethkingia meningoseptica ,business ,Gene - Abstract
The authors wish to make the following corrections to this paper [...]
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- 2019
45. Genomic Features, Comparative Genomic Analysis, and Antimicrobial Susceptibility Patterns of Chryseobacterium arthrosphaerae Strain ED882-96 Isolated in Taiwan
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Chung-Hsu Lai, Jiun-Nong Lin, Chih-Yu Liang, Chih-Hui Yang, and Yi-Han Huang
- Subjects
0301 basic medicine ,Comparative genomics ,Genetics ,lcsh:QH426-470 ,Tetracycline ,030106 microbiology ,Virulence ,comparative genomics ,Biology ,16S ribosomal RNA ,Glycylcycline ,whole-genome sequence ,Genome ,antimicrobial susceptibility ,03 medical and health sciences ,lcsh:Genetics ,030104 developmental biology ,Plasmid ,Chryseobacterium arthrosphaerae ,medicine ,genomic features ,Genetics (clinical) ,medicine.drug - Abstract
Bacteria belonging to the genus Chryseobacterium are ubiquitously distributed in natural environments, plants, and animals. Except C. indologenes and C. gleum, other Chryseobacterium species rarely cause human diseases. This study reported the whole-genome features, comparative genomic analysis, and antimicrobial susceptibility patterns of C. arthrosphaerae ED882-96 isolated in Taiwan. Strain ED882-96 was collected from the blood of a patient who had alcoholic liver cirrhosis and was an intravenous drug abuser. This isolate was initially identified as C. indologenes by using matrix-assisted laser desorption ionization&ndash, time of flight mass spectrometry. The analysis of 16S ribosomal RNA gene sequence revealed that ED882-96 shared 100% sequence identity with C. arthrosphaerae type strain CC-VM-7T. The results of whole-genome sequencing of ED882-96 showed two chromosome contigs and one plasmid. The total lengths of the draft genomes of chromosome and plasmid were 4,249,864 bp and 435,667 bp, respectively. The findings of both in silico DNA&ndash, DNA hybridization and average nucleotide identity analyses clearly demonstrated that strain ED882-96 was a species of C. arthrosphaerae. A total of 83 potential virulence factor homologs were predicted in the whole-genome sequencing of strain ED882-96. This isolate was resistant to all tested antibiotics, including &beta, lactams, &beta, lactam/&beta, lactamase inhibitor combinations, aminoglycosides, fluoroquinolones, tetracycline, glycylcycline, and trimethoprim-sulfamethoxazole. Only one antibiotic resistance gene was recognized in the plasmid. By contrast, many antibiotic resistance genes were identified in the chromosome. The findings of this study suggest that strain ED882-96 is a highly virulent and multidrug-resistant pathogen. Knowledge regarding genomic characteristics and antimicrobial susceptibility patterns provides valuable insights into this uncommon species.
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- 2019
46. Genomic Features, Comparative Genomic Analysis, and Antimicrobial Susceptibility Patterns of
- Author
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Chih-Yu, Liang, Chih-Hui, Yang, Chung-Hsu, Lai, Yi-Han, Huang, and Jiun-Nong, Lin
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Adult ,Chryseobacterium ,DNA, Bacterial ,Male ,Comparative Genomic Hybridization ,Whole Genome Sequencing ,Substance-Related Disorders ,Virulence Factors ,Chryseobacterium arthrosphaerae ,Taiwan ,Microbial Sensitivity Tests ,comparative genomics ,Chromosomes, Bacterial ,whole-genome sequence ,Article ,antimicrobial susceptibility ,Anti-Bacterial Agents ,Genome Size ,Liver Cirrhosis, Alcoholic ,Drug Resistance, Multiple, Bacterial ,RNA, Ribosomal, 16S ,Humans ,genomic features ,Plasmids - Abstract
Bacteria belonging to the genus Chryseobacterium are ubiquitously distributed in natural environments, plants, and animals. Except C. indologenes and C. gleum, other Chryseobacterium species rarely cause human diseases. This study reported the whole-genome features, comparative genomic analysis, and antimicrobial susceptibility patterns of C. arthrosphaerae ED882-96 isolated in Taiwan. Strain ED882-96 was collected from the blood of a patient who had alcoholic liver cirrhosis and was an intravenous drug abuser. This isolate was initially identified as C. indologenes by using matrix-assisted laser desorption ionization–time of flight mass spectrometry. The analysis of 16S ribosomal RNA gene sequence revealed that ED882-96 shared 100% sequence identity with C. arthrosphaerae type strain CC-VM-7T. The results of whole-genome sequencing of ED882-96 showed two chromosome contigs and one plasmid. The total lengths of the draft genomes of chromosome and plasmid were 4,249,864 bp and 435,667 bp, respectively. The findings of both in silico DNA–DNA hybridization and average nucleotide identity analyses clearly demonstrated that strain ED882-96 was a species of C. arthrosphaerae. A total of 83 potential virulence factor homologs were predicted in the whole-genome sequencing of strain ED882-96. This isolate was resistant to all tested antibiotics, including β-lactams, β-lactam/β-lactamase inhibitor combinations, aminoglycosides, fluoroquinolones, tetracycline, glycylcycline, and trimethoprim-sulfamethoxazole. Only one antibiotic resistance gene was recognized in the plasmid. By contrast, many antibiotic resistance genes were identified in the chromosome. The findings of this study suggest that strain ED882-96 is a highly virulent and multidrug-resistant pathogen. Knowledge regarding genomic characteristics and antimicrobial susceptibility patterns provides valuable insights into this uncommon species.
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- 2019
47. Enhancement of the stability of chlorophyll using chlorophyll-encapsulated polycaprolactone microparticles based on droplet microfluidics
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Chih-Hui Yang, Ching-Ju Hsiao, Jui-Fen Lin, Jei-Fu Shaw, Hsin-Yi Wen, Yu-Mei Lin, and Keng-Shiang Huang
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Chlorophyll ,Materials science ,Polyesters ,Microfluidics ,01 natural sciences ,Analytical Chemistry ,law.invention ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Optical microscope ,law ,Photosensitizer ,Microparticle ,Particle Size ,010401 analytical chemistry ,technology, industry, and agriculture ,04 agricultural and veterinary sciences ,General Medicine ,040401 food science ,Fluorescence ,Bioactive compound ,0104 chemical sciences ,chemistry ,Chemical engineering ,Polycaprolactone ,Food Science - Abstract
Chlorophyll is a valuable bioactive compound, which is used as a natural food coloring agent and a photosensitizer for photodynamic therapy because of its antioxidant properties, antimutagenic ability, and near-infrared fluorescence. However, chlorophyll is unstable when it comes to retaining its antioxidant activity, when exposed to oxygen, high temperature, or light environments. To enhance the stability of chlorophyll, a polymer encapsulation method was proposed. Polycaprolactone (PCL) was employed to encapsulate the chlorophyll, and the particles size of the composites was controlled through droplet microfluidics. The composites (chlorophyll-encapsulated PCL particles) were characterized through UV–VIS spectrometry, SEM, optical microscopy, and light exposure. The particles were spherical, with diameters adjustable from 68 to 247 μm. Additionally, the chlorophyll-encapsulated PCL particles exhibited considerably prolonged chlorophyll stability. The solid microparticle is more convenient for storage and transportation, and have great potential for application in the food industry.
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- 2019
48. Emerging Physical Approaches for Promoting siRNA Intracellular Delivery for Cancer Therapy
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Yen-Pei Lu, I-Neng Lee, Chih-Hui Yang, Jo-Wen Huang, Pei Y. Chiou, Ming-Yu Lin, Jen-Tsung Yang, and Jui-Chieh Chen
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Chemistry ,Organic Chemistry ,Cancer therapy ,Pharmacology ,Intracellular - Published
- 2016
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49. Genomic Features, Comparative Genomics, and Antimicrobial Susceptibility Patterns of Elizabethkingia bruuniana
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Hsi-Hsun Lin, Yi-Han Huang, Jiun-Nong Lin, Chung-Hsu Lai, and Chih-Hui Yang
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0301 basic medicine ,food.ingredient ,Sequence analysis ,In silico ,Elizabethkingia ,lcsh:Medicine ,Biology ,Genome ,Article ,03 medical and health sciences ,0302 clinical medicine ,food ,Drug Resistance, Multiple, Bacterial ,lcsh:Science ,Gene ,Genetics ,Comparative genomics ,Multidisciplinary ,Strain (biology) ,lcsh:R ,Pan-genome ,Anti-Bacterial Agents ,030104 developmental biology ,lcsh:Q ,Flavobacteriaceae ,Genome, Bacterial ,030217 neurology & neurosurgery - Abstract
Elizabethkingia bruuniana is a novel species of the Elizabethkingia genus. There is scant information on this microorganism. Here, we report the whole-genome features and antimicrobial susceptibility patterns of E. bruuniana strain EM798-26. Elizabethkingia strain EM798-26 was initially identified as E. miricola. This isolate contained a circular genome of 4,393,011 bp. The whole-genome sequence-based phylogeny revealed that Elizabethkingia strain EM798-26 was in the same group of the type strain E. bruuniana G0146T. Both in silico DNA-DNA hybridization and average nucleotide identity analysis clearly demonstrated that Elizabethkingia strain EM798-26 was a species of E. bruuniana. The pan-genome analysis identified 2,875 gene families in the core genome and 5,199 gene families in the pan genome of eight publicly available E. bruuniana genome sequences. The unique genes accounted for 0.2–12.1% of the pan genome in each E. bruuniana. A total of 59 potential virulence factor homologs were predicted in the whole-genome of E. bruuniana strain EM798–26. This isolate was nonsusceptible to multiple antibiotics, but susceptible to aminoglycosides, minocycline, and levofloxacin. The whole-genome sequence analysis of E. bruuniana EM798-26 revealed 29 homologs of antibiotic resistance-related genes. This study presents the genomic features of E. bruuniana. Knowledge of the genomic characteristics provides valuable insights into a novel species.
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- 2019
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50. MOESM6 of Origination and selection of ABCDE and AGL6 subfamily MADS-box genes in gymnosperms and angiosperms
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Gangxu Shen, Chih-Hui Yang, Chi-Yen Shen, and Keng-Shiang Huang
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Physics::Space Physics ,Statistics::Computation - Abstract
Additional file 6. The SEP genes in Bayesian tree and the Bayesian posterior probability values in tree.
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- 2019
- Full Text
- View/download PDF
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