180 results on '"Chih Chieh Yu"'
Search Results
2. Sex-based differences in obstructive sleep apnea and atrial fibrillation: Implication of atrial fibrillation burden
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Chou-Han Lin, Yen-Bin Liu, Lian-Yu Lin, Hui-Chun Huang, Li-Ting Ho, Yen-Wen Wu, Ling-Ping Lai, Wen-Jone Chen, Yi-Lwun Ho, and Chih-Chieh Yu
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Atrial fibrillation ,Sleep apnea ,Atrial fibrillation burden ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background: Obstructive sleep apnea (OSA) is a risk factor for atrial fibrillation (AF); however, it is unclear whether AF increases the risk of OSA. Furthermore, sex differences among patients with both AF and OSA remain unclear. We aimed to determine the association between an increased AF burden and OSA and investigate the differences in clinical characteristics between women and men with AF and OSA. Methods: This was a descriptive, cross-sectional analysis from a prospective cohort study. Patients with non-valvular AF were recruited from the cardiac electrophysiology clinic of a tertiary center; they underwent a home sleep apnea test and 14-day ambulatory electrocardiography. Moderate-to-severe OSA was defined as an apnea-hypopnea index of ≥15. Results: Of 320 patients with AF, 53.4% had moderate-to-severe OSA, and the mean body mass index (BMI) was 25.6 kg/m2. Less women (38.2%) had moderate-to-severe OSA than men (59.3%) (p
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- 2024
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3. Effective superior vena cava isolation using a novel C-shaped approach
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Chun-Kai Chen and Chih-Chieh Yu
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atrial fibrillation ,superior vena cava ,isolation ,non-circumferential ablation ,novel approach ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
IntroductionSuperior vena cava (SVC) isolation has been proposed as part of the ablation strategy for atrial fibrillation. However, circumferential isolation of the SVC can lead to late-onset complications, such as SVC stenosis.MethodsWe describe a detailed observation of the SVC conduction pattern and present a newly developed approach for SVC isolation that involves creating a C-shaped non-circumferential ablation line while sparing the lateral segment.ResultsTwelve consecutive patients were included in the study, all of whom achieved bidirectional block during the ablation procedure.DiscussionThis approach to SVC isolation is effective and has the potential to reduce ablation related complications; however, larger studies and long-term follow-up is warranted to confirm these findings.
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- 2023
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4. Taxonomic synopsis of Berberis (Berberidaceae) from the northern Hengduan mountains region in China, with descriptions of seven new species
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Yao-Ke Li, Julian Harber, Chuan Peng, Zhi-Qiang Du, Yao-Wu Xing, and Chih-Chieh Yu
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Berberidaceae ,Flora of China ,Herbarium taxonomy ,Plastome sequences ,nrDNA sequences ,Biology (General) ,QH301-705.5 ,Botany ,QK1-989 - Abstract
Though Berberis (Berberidaceae) is widely distributed across the Eurasian landmass it is most diverse in the Himalaya–Hengduan Mountain (HHM) region. There are more than 200 species in China where it is one of the most common mountain shrubs. The study on the taxonomy and evolution of Berberis in this region can thus provide an important insight into the origin and diversification of its flora. A prerequisite to this is mapping and describing the various species of Berberis in the region – a task that despite recent progress is by no means complete. It is clear that in China there may be a significant number of species still to be described and that even with published species much about their distribution remains to be discovered. As a contribution to the first of these tasks seven new species from the northern Hengduan Mountain of N. Sichuan and S. Qinghai: Berberis chinduensis, Berberis degexianensis, Berberis jiajinshanensis, Berberis jinwu, Berberis litangensis, Berberis longquensis and Berberis riparia, are described here. Differences in overall morphology and especially in floral structures with each other and with similar species of Berberis in the same region are presented. The report is the result of phylogenetic analyses based on plastome and partial nrDNA sequences of both the seven proposed new species and a significant number of similar species already published. Provisional conclusions as to the insights provides on the history of the genetic divergence are discussed.
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- 2022
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5. Clinical manifestations and genetic characteristics in the Taiwan thoracic aortic aneurysm and dissection cohort - a prospective cohort study
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De-Min Duan, Hsin-Hui Chiu, Pei-Lung Chen, Po-Ting Yeh, Chih-Wei Yu, Kai-Chien Yang, and Chih-Chieh Yu
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Aortic dissection ,Genetic testing ,Sudden death ,Aortic disease ,Medicine (General) ,R5-920 - Abstract
Background: Thoracic aortic aneurysm and dissection (TAAD) is a devastating but treatable disease if detected early. The clinical manifestations and genetic characteristics underlying TAAD patients in Taiwan, however, remain unclear. Methods: We consecutively recruited patients referred for TAAD screening and/or management at a tertiary medical center in Taiwan. All patients received a comprehensive survey of the clinical manifestations and a genetic testing with a 29-gene next-generation sequencing (NGS) panel. Results: Patients (n = 107) were referred for different reasons, and could be grouped into 4 categories: known aortic aneurysm or dissection (AoAD) (n = 57), Marfanoid features (n = 36), having family members of suspected AoAD (n = 11), and ectopic lens (n = 3). AoAD were confirmed in 73 (68.2%) of the entire cohort. Among all the clinical manifestations, skin striae distensae was the only physical sign that showed significant association with AoAD (p = 0.007 after adjusted). Disease-causing genes/variants were identified in 46 patients (43.0%); FBN1 was the most prevalent disease-causing gene, followed by TGFBR1, TGFBR2 and FBN2. A positive genetic testing was not only an independent predictor of AoAD (hazard ratio (HR) 3.468, 95% confidence interval (CI) [1.541–7.807], p = 0.003), but also had a higher chance of dissection among the patients with known dilated aorta (HR 4.552, 95% CI [1.578–13.135], p = 0.005). Conclusion: The presence of skin striae distensae may serve as a clinical cue for physicians to search for AoAD in subjects who are at risk. The NGS panel test not only helps confirm the diagnosis, but also stratify the risk of dissection among patients with dilated aorta.
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- 2022
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6. Impact of recording length and other arrhythmias on atrial fibrillation detection from wrist photoplethysmogram using smartwatches
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Min-Tsun Liao, Chih-Chieh Yu, Lian-Yu Lin, Ke-Han Pan, Tsung-Hsien Tsai, Yu-Chun Wu, and Yen-Bin Liu
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Medicine ,Science - Abstract
Abstract This study aimed to evaluate whether quantitative analysis of wrist photoplethysmography (PPG) could detect atrial fibrillation (AF). Continuous electrocardiograms recorded using an electrophysiology recording system and PPG obtained using a wrist-worn smartwatch were simultaneously collected from patients undergoing catheter ablation or electrical cardioversion. PPG features were extracted from 10, 25, 40, and 80 heartbeats of the split segments. Machine learning with a support vector machine and random forest approach were used to detect AF. A total of 116 patients were evaluated. We annotated > 117 h of PPG. A total of 6475 and 3957 segments of 25-beat pulse-to-pulse intervals (PPIs) were annotated as AF and sinus rhythm, respectively. The accuracy of the 25 PPIs yielded a test area under the receiver operating characteristic curve (AUC) of 0.9676, which was significantly better than the AUC for the 10 PPIs (0.9453; P
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- 2022
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7. The contrary conservation situations of two local critically endangered species, Vaccinium emarginatum (Ericaceae) and Elatostema platyphyllum (Urticaceae), growing on the eastern edge of the distribution
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Mayu Shibabayashi, Taiga Shimizu, Chinatsu Tokuhiro, Yoshihisa Suyama, Shota Sakaguchi, Takuro Ito, Chih-Chieh Yu, Kuo-Fang Chung, Jun’ichi Nagasawa, Toshiaki Shiuchi, Goro Kokubugata, Atsushi Abe, Akiyo Naiki, Atsushi J. Nagano, and Yuji Isagi
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conservation value ,endangered species ,phylogeny ,genetic diversity ,genetic differentiation ,genetic structure ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
As biodiversity loss continues, there is an urgent need to develop efficient conservation measures to protect diversity with limited conservation resources. Conservation targets have generally been selected based on their population size, but more detailed assessments clarifying the phylogenetic genetic status, history, and phylogenetic uniqueness of rare species is crucial to set more appropriate and effective conservation measures. In Japan, the Act on Conservation of Endangered Species of Wild Fauna and Flora designated endangered plants with high conservation priority, but >40% of these species also grow overseas. We conducted comparative analyses based on ddRADseq and MIG-seq to evaluate the population conservation status and value of Vaccinium emarginatum and Elatostema platyphyllum which are growing across national borders at the eastern edge of their species distribution range. The analyses revealed contrasting conservation status between the two species; the Japanese population of V. emarginatum had lower genetic diversity at the individual level and phylogenetically differentiated from Taiwanese populations, while that of E. platyphyllum had higher diversity at the individual level and is a relatively recent migrant with little phylogenetical differentiation from Taiwanese populations. The two species, which share the common feature of being critically rare in Japan, showed contrasting genetic/phylogenetic characteristics. This study provided useful information for appropriate conservation measures based on species’ phylogenetic traits and genetic diversity.
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- 2023
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8. Assessing the cognitive status of Drosophila by the value-based feeding decision
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Chih-Chieh Yu, Ferng-Chang Chang, Yong-Huei Hong, Jian-Chiuan Li, Po-Lin Chen, Chun-Hong Chen, Tzai-Wen Chiu, Tsai-Te Lu, Yun-Ming Wang, and Chih-Fei Kao
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Geriatrics ,RC952-954.6 - Abstract
Abstract Decision-making is considered an important aspect of cognitive function. Impaired decision-making is a consequence of cognitive decline caused by various physiological conditions, such as aging and neurodegenerative diseases. Here we exploited the value-based feeding decision (VBFD) assay, which is a simple sensory–motor task, to determine the cognitive status of Drosophila. Our results indicated the deterioration of VBFD is notably correlated with aging and neurodegenerative disorders. Restriction of the mushroom body (MB) neuronal activity partly blunted the proper VBFD. Furthermore, using the Drosophila polyQ disease model, we demonstrated the impaired VBFD is ameliorated by the dinitrosyl iron complex (DNIC-1), a novel and steady nitric oxide (NO)-releasing compound. Therefore we propose that the VBFD assay provides a robust assessment of Drosophila cognition and can be used to characterize additional neuroprotective interventions.
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- 2021
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9. Social perception of young adults prolongs the lifespan of aged Drosophila
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Li-Chun Cho, Chih-Chieh Yu, and Chih-Fei Kao
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Geriatrics ,RC952-954.6 - Abstract
Abstract Lifespan is modulated at distinct levels by multiple factors, including genetic backgrounds, the environment, behavior traits, metabolic status, and more interestingly, sensory perceptions. However, the effects of social perception between individuals living in the same space remain less clear. Here, we used the Drosophila model to study the influences of social perception on the lifespan of aged fruit flies. We found the lifespan of aged Drosophila is markedly prolonged after being co-housed with young adults of the same gender. Moreover, the changes of lifespan were affected by several experimental contexts: (1) the ratios of aged and young adults co-housed, (2) the chronological ages of two populations, and (3) the integrity of sensory modalities. Together, we hypothesize the chemical/physical stimuli derived from the interacting young adults are capable of interfering with the physiology and behavior of aged flies, ultimately leading to the alteration of lifespan.
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- 2021
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10. Tetra-gel enables superior accuracy in combined super-resolution imaging and expansion microscopy
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Hsuan Lee, Chih-Chieh Yu, Edward S. Boyden, Xiaowei Zhuang, and Pallav Kosuri
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Medicine ,Science - Abstract
Abstract The accuracy of expansion microscopy (ExM) depends on the structural preservation of samples embedded in a hydrogel. However, it has been unknown to what extent gel embedding alters the molecular positions of individual labeled sites. Here, we quantified the accuracy of gel embedding by using stochastic optical reconstruction microscopy (STORM) to image DNA origami with well-defined structures. We found that embedding in hydrogels based on polyacrylamide, the most widely used chemistry in ExM, resulted in random displacements of labeled sites with a standard deviation of ~ 16 nm. In contrast, we found that embedding in tetra-gel, a hydrogel that does not depend on free-radical chain-growth polymerization, preserved labeled sites with a standard deviation of less than 5 nm. By combining tetra-gel ExM with STORM, we were able to resolve 11-nm structural features without the loss in accuracy seen with polyacrylamide gels. Our study thus provides direct measurements of the single-molecule distortions resulting from hydrogel embedding, and presents a way to improve super-resolution microscopy through combination with tetra-gel ExM.
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- 2021
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11. Higher long-term visit-to-visit glycemic variability predicts new-onset atrial fibrillation in patients with diabetes mellitus
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Jung-Chi Hsu, Yen-Yun Yang, Shu-Lin Chuang, Chih-Chieh Yu, and Lian-Yu Lin
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Glycemic variability ,Atrial fibrillation ,Diabetes mellitus ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Atrial fibrillation (AF) is prevalent in patients with type 2 diabetes mellitus (T2DM). Glycemic variability (GV) is associated with risk of micro- and macrovascular diseases. However, whether the GV can increase the risk of AF remains unknown. Methods The cohort study used a database from National Taiwan University Hospital, a tertiary medical center in Taiwan. Between 2014 and 2019, a total of 27,246 adult patients with T2DM were enrolled for analysis. Each individual was assessed to determine the coefficients of variability of fasting glucose (FGCV) and HbA1c variability score (HVS). The GV parameters were categorized into quartiles. Multivariate Cox regression models were employed to estimate the relationship between the GV parameters and the risk of AF, transient ischemic accident (TIA)/ischemic stroke and mortality in patients with T2DM. Results The incidence rates of AF and TIA/ischemic stroke were 21.31 and 13.71 per 1000 person-year respectively. The medium follow-up period was 70.7 months. In Cox regression model with full adjustment, the highest quartile of FGCV was not associated with increased risk of AF [Hazard ratio (HR): 1.12, 95% confidence interval (CI) 0.96–1.29, p = 0.148] or TIA/ischemic stroke (HR: 1.04, 95% CI 0.83–1.31, p = 0.736), but was associated with increased risk of total mortality (HR: 1.33, 95% CI 1.12–1.58, p
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- 2021
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12. The complete chloroplast genome of Androsace erecta (Primulaceae) and its phylogenetic implication
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Chuan Peng, Chih-Chieh Yu, and Yao-Wu Xing
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androsace sect. orthocaulon ,molecular systematics ,whole plastome sequence ,Genetics ,QH426-470 - Abstract
With about 153 species, the genus Androsace (Primulaceae) is known for its horticultural and economic importance. In this study, we report the complete chloroplast genome of Androsace erecta Maximowicz, a morphologically distinct species of Sect. Orthocaulon native to the Western China. The plastome of A. erecta is highly conserved in genome size, structure, and content when compared to all previously published plastomes of the genus. The phylogenomic analysis strongly supported A. erecta as sister to a clade comprising species of Sections Aizoideia and Chamaejasme. Lastly, we selected the four most variable regions across the Androsace species plastomes (trnKUUU-rps16, trnSGCU-trnGUCC, psbE-petL, and infA-rps8), which were considered to be suitable candidate DNA barcodes for Androsace.
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- 2021
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13. Sedum formosanum subsp. miyakojimense (Crassulaceae), a new subspecies from Miyako-jima Island of the Ryukyu Islands, Japan
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Takuro Ito, Chih-Chieh Yu, Masatsugu Yokota, and Goro Kokubugata
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Botany ,QK1-989 - Abstract
We re-examined the taxonomic status of plants treated as Sedum formosanum (Crassulaceae) from Miyako-jima Island of the Ryukyu Islands, Japan, using morphological comparison and molecular phylogenetic analyses with related species. In morphology, plants from Miyako-jima Island bore a close resemblance to the other plants of S. formosanum, but differed in being perennial, polycarpic, and having lateral axillary branches. Molecular analyses based on ITS of nrDNA and six regions of cpDNA sequencing indicated that the Miyako-jima plants formed a distinct subclade. This subclade was part of a polytomy with three other subclades comprising nine taxa endemic to Taiwan and S. formosanum from other areas, including the type locality. Therefore, we propose and describe the Miyako-jima plants as a new subspecies, Sedum formosanum subsp. miyakojimense.
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- 2020
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14. Mahonia vs. Berberis Unloaded: Generic Delimitation and Infrafamilial Classification of Berberidaceae Based on Plastid Phylogenomics
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Chia-Lun Hsieh, Chih-Chieh Yu, Yu-Lan Huang, and Kuo-Fang Chung
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accD length variation ,cytonuclear discordance ,IR expansion ,molecular dating ,tribal classification ,Plant culture ,SB1-1110 - Abstract
The early-diverging eudicot family Berberidaceae is composed of a morphologically diverse assemblage of disjunctly distributed genera long praised for their great horticultural and medicinal values. However, despite century-long studies, generic delimitation of Berberidaceae remains controversial and its tribal classification has never been formally proposed under a rigorous phylogenetic context. Currently, the number of accepted genera in Berberidaceae ranges consecutively from 13 to 19, depending on whether to define Berberis, Jeffersonia, and Podophyllum broadly, or to segregate these three genera further and recognize Alloberberis, Mahonia, and Moranothamnus, Plagiorhegma, and Dysosma, Diphylleia, and Sinopodophyllum, respectively. To resolve Berberidaceae’s taxonomic disputes, we newly assembled 23 plastomes and, together with 85 plastomes from the GenBank, completed the generic sampling of the family. With 4 problematic and 14 redundant plastome sequences excluded, robust phylogenomic relationships were reconstructed based on 93 plastomes representing all 19 genera of Berberidaceae and three outgroups. Maximum likelihood phylogenomic relationships corroborated with divergence time estimation support the recognition of three subfamilies Berberidoideae, Nandinoideae, and Podophylloideae, with tribes Berberideae and Ranzanieae, Leonticeae and Nandineae, and Podophylleae, Achlydeae, Bongardieae tr. nov., Epimedieae, and Jeffersonieae tr. nov. in the former three subfamilies, respectively. By applying specifically stated criteria, our phylogenomic data also support the classification of 19 genera, recognizing Alloberberis, Mahonia, and Moranothamnus, Plagiorhegma, and Diphylleia, Dysosma, and Sinopodophyllum that are morphologically and evolutionarily distinct from Berberis, Jeffersonia, and Podophyllum, respectively. Comparison of plastome structures across Berberidaceae confirms inverted repeat expansion in the tribe Berberideae and reveals substantial length variation in accD gene caused by repeated sequences in Berberidoideae. Comparison of plastome tree with previous studies and nuclear ribosomal DNA (nrDNA) phylogeny also reveals considerable conflicts at different phylogenetic levels, suggesting that incomplete lineage sorting and/or hybridization had occurred throughout the evolutionary history of Berberidaceae and that Alloberberis and Moranothamnus could have resulted from reciprocal hybridization between Berberis and Mahonia in ancient times prior to the radiations of the latter two genera.
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- 2022
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15. Ecological factors correlate with genome size variation of Acanthocalyx (Caprifoliaceae) in the Hengduan-Himalaya Mountains.
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Nan WANG, Chih-Chieh YU, Yan-Xia JIA, and Yao-Wu XING
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GENOME size , *NITROGEN in soils , *PLANT size , *MOUNTAIN plants , *POPULATION dynamics , *GENOMES - Abstract
While the genome sizes of flowering plants vary c. 2400-fold, it remains little known what factors may have driven the variation. In this study, we investigated the spatial pattern of the genome size of 54 populations of Acanthocalyx, which is found in the Hengduan-Himalaya Mountains. Our results showed that the red-flowered lineage of Acanthocalyx had significantly larger genomes (ranging from 1.9 to 2.5 Gb) compared to the white-flowered lineage, which had an average genome size of 1.27 Gb. This difference in genome size can be attributed to particular environmental factors. Within the red-flowered lineage, the genome size was positively correlated with soil nitrogen content and mean diurnal range. On the other hand, the genome size of the whiteflowered lineage, Acanthocalyx alba was negatively correlated with latitude which aligns with the population dynamics of this species during the Pleistocene. Overall, our findings highlight the influence of abiotic factors and geography in regulating the genome size of Acanthocalyx species. This study contributes to our understanding of the evolution of alpine plants in the Hengduan-Himalaya Mountains. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Association between atrial fibrillation burden and cognitive function in patients with atrial fibrillation
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Sung-Chun Tang, Yen-Bin Liu, Lian-Yu Lin, Hui-Chun Huang, Li-Ting Ho, Ling-Ping Lai, Wen-Jone Chen, Yi-Lwung Ho, and Chih-Chieh Yu
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Cardiology and Cardiovascular Medicine - Published
- 2023
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17. GSTM3 variant is a novel genetic modifier in Brugada syndrome, a disease with risk of sudden cardiac death
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Jyh-Ming Jimmy Juang, Anna Binda, Shyh-Jye Lee, Juey-Jen Hwang, Wen-Jone Chen, Yen-Bin Liu, Lian-Yu Lin, Chih-Chieh Yu, Li-Ting Ho, Hui-Chun Huang, Ching-Yu Julius Chen, Tzu-Pin Lu, Liang-Chuan Lai, Shih-Fan Sherri Yeh, Ling-Ping Lai, Eric Y. Chuang, Ilaria Rivolta, and Charles Antzelevitch
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Inherited cardiac arrhythmia ,Genetics ,Sudden cardiac death ,Brugada syndrome ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: Brugada syndrome (BrS) is a rare inherited disease causing sudden cardiac death (SCD). Copy number variants (CNVs) can contribute to disease susceptibility, but their role in Brugada syndrome (BrS) is unknown. We aimed to identify a CNV associated with BrS and elucidated its clinical implications. Methods: We enrolled 335 unrelated BrS patients from 2000 to 2018 in the Taiwanese population. Microarray and exome sequencing were used for discovery phase whereas Sanger sequencing was used for the validation phase. HEK cells and zebrafish were used to characterize the function of the CNV variant. Findings: A copy number deletion of GSTM3 (chr1:109737011-109737301, hg38) containing the eighth exon and the transcription stop codon was observed in 23.9% of BrS patients versus 0.8% of 15,829 controls in Taiwan Biobank (P < 0.001), and 0% in gnomAD. Co-segregation analysis showed that the co-segregation rate was 20%. Patch clamp experiments showed that in an oxidative stress environment, GSTM3 down-regulation leads to a significant decrease of cardiac sodium channel current amplitude. Ventricular arrhythmia incidence was significantly greater in gstm3 knockout zebrafish at baseline and after flecainide, but was reduced after quinidine, consistent with clinical observations. BrS patients carrying the GSTM3 deletion had higher rates of sudden cardiac arrest and syncope compared to those without (OR: 3.18 (1.77–5.74), P
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- 2020
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18. Renal Denervation Decreases Susceptibility to Arrhythmogenic Cardiac Alternans and Ventricular Arrhythmia in a Rat Model of Post-Myocardial Infarction Heart Failure
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Sheng-Nan Chang, MD, Shu-Hsuan Chang, MD, Chih-Chieh Yu, MD, Cho-Kai Wu, MD, PhD, Ling-Ping Lai, MD, PhD, Fu-Tien Chiang, MD, PhD, Juey-Jen Hwang, MD, PhD, Jiunn-Lee Lin, MD, PhD, and Chia-Ti Tsai, MD, PhD
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Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Summary: Several studies have shown the beneficial effect of renal denervation (RDN) in the treatment of ventricular arrhythmia, especially in the setting of heart failure (HF). However, the underlying mechanism of antiarrhythmic effect of RDN is unknown. Arrhythmogenic cardiac alternans, particularly spatially discordant repolarization alternans, characterized by simultaneous prolongation and shortening of action potential duration (APD) in different myocardial regions, is central to the genesis of ventricular fibrillation in HF. Whether RDN decreases the susceptibility to arrhythmogenic cardiac alternans in HF has never been addressed before. The authors used a rat model of post-myocardial infarction HF and dual voltage-calcium optical mapping to investigate whether RDN could attenuate arrhythmogenic cardiac alternans that predisposes to ventricular arrhythmias, as well as the hemodynamic effect of RDN in HF. The HF rats had increased body weights, dilated hearts, and lower blood pressure. The HF rats also had longer ventricular APDs and a delay in the decay of the calcium transient, typical electrophysiological features of human HF. Susceptibility to calcium transient alternans, APD alternans, and spatially discordant APD alternans was increased in the HF hearts. RDN significantly attenuated a delay in the decay of the calcium transient, calcium transient and APD alternans, and importantly, the discordant APD alternans, and thereby decreased the incidence of induced ventricular arrhythmia in HF. RDN did not further decrease blood pressure in HF rats. In conclusion, RDN improves calcium cycling and prevents spatially discordant APD alternans and ventricular arrhythmia in HF. RDN does not aggravate hemodynamics in HF. Key Words: alternans, arrhythmia mechanism, heart failure, renal denervation
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- 2017
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19. Photo-expansion microscopy enables super-resolution imaging of cells embedded in 3D hydrogels
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Kemal Arda Günay, Tze-Ling Chang, Nathaniel P. Skillin, Varsha V. Rao, Laura J. Macdougall, Alicia A. Cutler, Jason S. Silver, Tobin E. Brown, Chi Zhang, Chih-Chieh Yu, Bradley B. Olwin, Edward S. Boyden, and Kristi S. Anseth
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,General Chemistry ,Condensed Matter Physics - Published
- 2023
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20. Genome-wide screening identifies a KCNIP1 copy number variant as a genetic predictor for atrial fibrillation
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Chia-Ti Tsai, Chia-Shan Hsieh, Sheng-Nan Chang, Eric Y. Chuang, Kwo-Chang Ueng, Chin-Feng Tsai, Tsung-Hsien Lin, Cho-Kai Wu, Jen-Kuang Lee, Lian-Yu Lin, Yi-Chih Wang, Chih-Chieh Yu, Ling-Ping Lai, Chuen-Den Tseng, Juey-Jen Hwang, Fu-Tien Chiang, and Jiunn-Lee Lin
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Science - Abstract
Tsai et al. here utilize a multi-stage genome-wide association study in Taiwanese population to show a copy number variation in the intron of potassium interacting channel 1 gene (KCNIP1) to be strongly associated with atrial fibrillation. The study also examines the functionality of KCNIP1 in heart electrophysiological function using cultured myocytes and zebrafish.
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- 2016
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21. Loss of the wild-type KRAS allele promotes pancreatic cancer progression through functional activation of YAP1
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Ye-Ran Yang, Chih-Chieh Yu, Dillon C. Karg, Emily Chen, Han Yan, Ji Luo, Ayman Lee Youssof, Yi Miao, Gloria H. Su, Haoqiang Ying, Jun Yan, Wanglong Qiu, Edwin C Cheung, Richard A. Friedman, and Stuart A. Fine
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Cancer Research ,endocrine system diseases ,Loss of Heterozygosity ,Mice, Nude ,Apoptosis ,Biology ,medicine.disease_cause ,Somatic evolution in cancer ,Metastasis ,Proto-Oncogene Proteins p21(ras) ,Mice ,Pancreatic cancer ,Biomarkers, Tumor ,Tumor Cells, Cultured ,Genetics ,medicine ,Animals ,Humans ,Allele ,neoplasms ,Molecular Biology ,Cell Proliferation ,YAP1 ,Hippo signaling pathway ,Wild type ,Forkhead Transcription Factors ,YAP-Signaling Proteins ,Prognosis ,medicine.disease ,Xenograft Model Antitumor Assays ,digestive system diseases ,Gene Expression Regulation, Neoplastic ,Pancreatic Neoplasms ,Cancer research ,Female ,KRAS ,Carcinoma, Pancreatic Ductal - Abstract
Human pancreatic ductal adenocarcinoma (PDAC) harboring one KRAS mutant allele often displays increasing genomic loss of the remaining wild-type (WT) allele (known as LOH at KRAS) as tumors progress to metastasis, yet the molecular ramification of this WT allelic loss is unknown. In this study, we showed that the restoration of WT KRAS expression in human PDAC cell lines with LOH at KRAS significantly attenuated the malignancy of PDAC cells both in vitro and in vivo, demonstrating a tumor-suppressive role of the WT KRAS allele. Through RNA-Seq, we identified the HIPPO signaling pathway to be positively regulated by WT KRAS in PDAC cells. In accordance with this observation, PDAC cells with LOH at KRAS exhibited increased nuclear localization and activation of transcriptional co-activator YAP1. Mechanistically, we discovered that WT KRAS expression sequestered YAP1 from the nucleus, through enhanced 14-3-3zeta interaction with phosphorylated YAP1 at S127. Consistently, expression of a constitutively-active YAP1 mutant in PDAC cells bypassed the growth inhibitory effects of WT KRAS. In patient samples, we found that the YAP1-activation genes were significantly upregulated in tumors with LOH at KRAS, and YAP1 nuclear localization predicted poor survival for PDAC patients. Collectively, our results reveal that the WT allelic loss leads to functional activation of YAP1 and enhanced tumor malignancy, which explains the selection advantage of the tumor cells with LOH at KRAS during pancreatic cancer clonal evolution and progression to metastasis, and should be taken into consideration in future therapeutic strategies targeting KRAS.
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- 2021
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22. Unique clinical characteristics and SCN5A mutations in patients with Brugada syndrome in Taiwan
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Jyh-Ming Jimmy Juang, Chia-Ti Tsai, Lian-Yu Lin, Yen-Bin Liu, Chih-Chieh Yu, Juey-Jen Hwang, Jien-Jiun Chen, Fu-Chun Chiu, Wen-Jone Chen, Chuen-Den Tseng, Fu-Tien Chiang, Huei-Ming Yeh, Shih-Fan Sherri Yeh, Ling-Ping Lai, and Jiunn-Lee Lin
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Brugada syndrome ,SCN5A mutations ,sodium channel ,Taiwan ,Medicine (General) ,R5-920 - Abstract
Brugada syndrome (BrS) is a hereditable sudden cardiac death (SCD). Mutations in the SCN5A gene (the most common BrS-causing gene) are responsible for 20–25% of this disease in Caucasian populations. However, the prevalence of SCN5A mutations in patients with BrS in the Chinese Han population in Taiwan remains unknown. Therefore, in this study, we investigated the prevalence of the SCN5A mutation in the largest BrS cohort in Taiwan. Methods: We consecutively enrolled 47 unrelated patients with BrS from medical centers and hospitals in Taiwan between 2000 and 2010. Mutations within all the 27 translated exons, and exon–intron boundaries of the SCN5A-encoded cardiac sodium channel were screened in all patients with BrS using direct sequencing. A total of 500 unrelated healthy volunteers with a normal electrocardiogram were genotyped as a control group. Results: SCN5A genetic variants were identified in 14 of the 47 patients with BrS and four of the 14 patients with BrS had missense mutations (1651 G>A, 1776 C>G, 3578 G>A). The prevalence rate of SCN5A mutations was approximately 8% (4/47), which was significantly lower than that reported in Caucasian populations (20–25%; p = 0.0007). The average age of these 14 BrS patients with SCN5A variants at diagnosis (12 men and 2 women) was 40 ± 13 years. Four patients experienced SCD, and six presented with seizure or syncope. Only three patients (3/14, 21.4%) had a family history of SCD. Conclusion: The prevalence of SCN5A mutations in the Chinese Han population in Taiwan may be lower than that reported in the Caucasian populations. In addition, most patients with BrS did not have a family history of SCD.
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- 2015
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23. Comparative phylogeography of Acanthocalyx (Caprifoliaceae) reveals distinct genetic structures in the Himalaya–Hengduan Mountains
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Zheng-Yan Hu, Wen-Na Ding, Hui Wang, Quan-Jing Zheng, Qi-Yong Mu, Chuan Peng, Yao-Wu Xing, Chih-Chieh Yu, Ting-Shen Han, Shook Ling Low, Yan Wang, and Qiu-Yue Zhang
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Phylogeography ,Genus ,Ecology ,Genetic variation ,Genetic structure ,Biological dispersal ,Plant Science ,Biology ,Endemism ,Acanthocalyx ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Global biodiversity - Abstract
The Himalaya–Hengduan Mountain (HHM) region consists of two global biodiversity hotspots characterized by a high degree of plant endemism. However, little is known about how these endemic species are formed and maintained in relation to the regional geomorphology of the past or current time. Thus, this study investigated the genetic structure of the herbaceous genus Acanthocalyx (Caprifoliaceae) endemic to the HHM to demonstrate if major geographic or ecological barriers in the HHM region have influenced its phylogeographic patterns. Our analyses revealed distinct genetic structures within A. alba and A. nepalensis and indicated that A. delavayi may have recently evolved from isolated peripheral populations of A. nepalensis. In particular, we not only confirmed a well-known genetic structure of alpine plants between the Himalayas and the Hengduan Mountains but also discovered a notable floristic boundary (bounded by 30° to 31°N latitude) within the Hengduan Mountains from A. alba. This study provides new insights into the dispersal and intraspecific genetic variation of Acanthocalyx and highlights the importance of geomorphological features for the diversification of HHM alpine flora.
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- 2021
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24. Longitudinal imaging of Caenorhabditis elegans in a microfabricated device reveals variation in behavioral decline during aging
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Matthew A Churgin, Sang-Kyu Jung, Chih-Chieh Yu, Xiangmei Chen, David M Raizen, and Christopher Fang-Yen
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WorMotel ,aging ,lifespan ,healthspan ,stress resistance ,behavior ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
The roundworm C. elegans is a mainstay of aging research due to its short lifespan and easily manipulable genetics. Current, widely used methods for long-term measurement of C. elegans are limited by low throughput and the difficulty of performing longitudinal monitoring of aging phenotypes. Here we describe the WorMotel, a microfabricated device for long-term cultivation and automated longitudinal imaging of large numbers of C. elegans confined to individual wells. Using the WorMotel, we find that short-lived and long-lived strains exhibit patterns of behavioral decline that do not temporally scale between individuals or populations, but rather resemble the shortest and longest lived individuals in a wild type population. We also find that behavioral trajectories of worms subject to oxidative stress resemble trajectories observed during aging. Our method is a powerful and scalable tool for analysis of C. elegans behavior and aging.
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- 2017
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25. A new Rorippa species (Brassicaceae), R. hengduanshanensis, from the Hengduan Mountains in China
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Yao-Wu Xing, Quan-Jing Zheng, Ting-Shen Han, and Chih-Chieh Yu
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Rorippa ,Phylogenetic tree ,biology ,Genus ,Botany ,Molecular phylogenetics ,Brassicaceae ,Petal ,Plant Science ,Silique ,biology.organism_classification ,Eudicots ,Ecology, Evolution, Behavior and Systematics - Abstract
A new species of genus Rorippa, R. hengduanshanensis, from the Hengduan Mountains, is described herein. Comparing the floral structure and overall fruit morphology of R. hengduanshanensis with similar taxa (e.g., R. benghalensis, R. dubia, and R. indica) revealed a series of morphological differences, both qualitative and quantitative. R. hengduanshanensis differs from R. benghalensis in the ebracteate racemes; from R. dubia in the flattened silique, the presence of four petals and the ploidy level (2n=6x=48); and from R. indica in the uniseriate seeds. Phylogenetic analyses using three plastid markers (psbC-trnS, trnG-trnM, and trnL) further revealed clear interspecific divergences that can distinguish R. hengduanshanensis from its morphologically related taxa.
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- 2021
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26. CHANGE IN BLOOD GELSOLIN CONCENTRATION IN RESPONSE TO PHYSICAL EXERCISE
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Jan Górski, Robert Bucki, Marcin Baranowski, Barbara Długołęcka, Małgorzata Charmas, Małgorzata Żendzian-Piotrowska, and Chih-Chieh Yu
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blood ,exercise ,gelsolin ,Sports medicine ,RC1200-1245 ,Biology (General) ,QH301-705.5 - Abstract
Plasma gelsolin (pGSN) produced by muscle is an abundant protein of extracellular fluids capable of severing actin filaments and eliminating actin from the circulation. Additionally, pGSN modulates the cellular effects of some bioactive lipids. In this study we test the hypothesis that hormonal and metabolic adaptations to exercise are associated with changes in gelsolin concentration in blood. Plasma samples were collected from twenty healthy males recruited from untrained (UT, n=10) and endurance trained (ET, n=10) groups that performed 30-60 minutes of exercise on a cycloergometer at a workload corresponding to 700of VO2max. Gelsolin concentration was determined by quantitative Western blot analysis with an anti-human gelsolin antibody. The gelsolin concentration in UT and ET subjects before starting exercise ranged from 104 to 330 and 163 to 337 µg•ml-1 respectively. After 30 minutes of exercise we observed a significant decrease of plasma gelsolin in the UT group (p
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- 2013
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27. Development and characterization of EST-SSR markers in creeping mazus (Mazus miquelii), and cross-amplification in five related species
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Masaya Yamamoto, Daiki Takahashi, Chih-Chieh Yu, and Hiroaki Setoguchi
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microsatellite ,lcsh:Biology (General) ,mazus ,expressed sequence tag ,mazaceae ,genetic diversity ,lcsh:QH301-705.5 - Abstract
Simple sequence repeat (SSR) markers were developed from expressed sequence tags (ESTs) for Mazus miquelii (Mazaceae), one of the most widespread species of the genus found in mainland China to Japan and North America, with the goal of elucidating the hidden genetic diversity and pollination ecology of the species. Of the initial 48 EST-SSR markers designed based on transcriptome data, 36 loci were successfully amplified, 16 of which were polymorphic. Polymorphisms for these markers were tested on 72 individuals from three populations in Japan. Two to eleven alleles per locus were detected, and the levels of observed and expected heterozygosity ranged from 0.181 to 0.708 and 0.154 to 0.715, respectively. Most loci were amplified successfully in five related Japanese and Taiwanese species. These markers will empower ecological and evolutionary studies in the creeping mazus and facilitate the disentanglement of phylogenetic relationships with related species.
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- 2020
28. Randomized Ablation-Based Rhythm-Control Versus Rate-Control Trial in Patients With Heart Failure and Atrial Fibrillation: Results from the RAFT-AF trial
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Ratika Parkash, George A. Wells, Jean Rouleau, Mario Talajic, Vidal Essebag, Allan Skanes, Stephen B. Wilton, Atul Verma, Jeffrey S. Healey, Laurence Sterns, Matthew Bennett, Jean-Francois Roux, Lena Rivard, Peter Leong-Sit, Mats Jensen-Urstad, Umjeet Jolly, Francois Philippon, John L. Sapp, Anthony S.L. Tang, Paul MacDonald, Santabhanu Chakrabarti, John Yeung-Lai-Wah, Andrew Ignaszewski, Stanley Tung, Shahnawaz Virani, Marc Deyell, Andrew Krahn, Jason Andrade, Lynn Straatman, Mustafa Toma, Graham Wong, Matthew Wei, Isabelle Greiss, Jean-Marc Raymond, Benoit Coutu, Paolo Costi, Fadi Mansour, Wouter Saint-Phard, Isabelle Denis, Julie Fleury, Felix Ayala-Paredes, Mariano Badra-Verdu, Charles Dussault, Nadia Vachon, Véronique Dagenais, Caroline Lamoureux, Jeff Healey, Stuart Connolly, C. Sebastien Ribas, Syamkumar Divakaramenon, Jorge Wong, Guy Amit, Wendy Meyer, Isabelle Nault, Jean Champagne, Jean-Francois Sarrazin, Gilles O’Hara, Louis Blier, Benoit Plourde, Christian Steinburg, Karine Roy, Paule Banville, Brigitte Ottinger, Marie-Eve Boucher, Marina Sanchez, Marc Dubuc, Peter Guerra, Katia Dyrda, Paul Khairy, Laurent Macle, Blandine Mondesert, Denis Roy, Bernard Thibault, Rafik Tadros, Véronique Roy, Damian Redfearn, Hoshiar Abdollah, Adrian Baranchuk, Kevin Michael, Christopher Simpson, Sharlene Hammond, Brian Clarke, Carlos Morillo, Vikas Kuriachan, George Veenhuyzen, Russell Quinn, Derek Exner, Jonathan Howlett, Jennifer McKeage, Lorne Gula, Jaimie Manlucu, Anthony Tang, George Klein, Sabrina Wall, Yomna El-Sakka, Tom Hadjis, Martin Bernier, Jacqueline Joza, Jean- Francois Roux, Alexander Omelchenko, Thais Nascimento, Fiorella Rafti, Ida DiStefano, John Sapp, Chris Gray, Martin Gardner, Amir Abdel-Wahab, Ciorsti J MacIntyre, Miroslaw Rajda, Patrick O’Regan, Mary Lee Levins-Lamont, Evan Lockwood, Tom Hruczkowski, Lucas Valtuille, Michael Chan, Jennifer Halenar, Samantha McLean, Yaariv Khaykin, Lynn Nyman, Zaev Wulffhart, Alfredo Pantano, Bernice Tsang, Sherri Patterson, Annette Nath, Clause Rinne, Irene Janzen, Eugene Crystal, Ilan Lashevsky, Sheldon Singh, Irving Tiong, Ambreen Syeda, Anyur Tremblay, Andrew C. T. Ha, Vijay Chauhan, Ann Hill, Pablo Nery, David Birnie, Calum Redpath, Martin Green, Girish Nair, Robert Lemery, Mouhannad Sadek, Karen MacDonald, Paul Novak, Richard Leather, Elizabeth Swiggum, Markus Sikkel, Chris Lane, Tanner Rakochey, Caitlin Patterson, Tiago Luiz Luz Leiria, Gustavo Glotz de Lima, Roberto Sant’Anna, Eduardo Dutz, Cristina Klein Weber, Aline Peixoto Deiro, Laís Machado Hoscheidt, Cecile Linde, Ott Saluveer, Carina Carnlof, Chih-Chieh Yu, Fu-Chun Chiu, Jiunn-Lee Lin, Cheng-Yu Huang, Patricia Theoret-Patrick, Janine Ryan, My-Linh Tran, Li Chen, Sarah Singh, George Wells, Gary Newton, Doug Coyle, George Wyse, Dennis Cassidy, Lehana Thabane, Lisa Mielniczuk, Andrew Ha, TIago Luiz Luz Leiria, Niko Tzemos, Andrew Mathew, De Thain, Anita MacDonald, and Marcia Shields
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Heart Failure ,Treatment Outcome ,Physiology (medical) ,Atrial Fibrillation ,Catheter Ablation ,Quality of Life ,Humans ,Stroke Volume ,Cardiology and Cardiovascular Medicine ,Ventricular Function, Left - Abstract
Background: Atrial fibrillation (AF) and heart failure (HF) frequently coexist and can be challenging to treat. Pharmacologically based rhythm control of AF has not proven to be superior to rate control. Ablation-based rhythm control was compared with rate control to evaluate if clinical outcomes in patients with HF and AF could be improved. Methods: This was a multicenter, open-label trial with blinded outcome evaluation using a central adjudication committee. Patients with high-burden paroxysmal (>4 episodes in 6 months) or persistent (duration Results: From December 1, 2011, to January 20, 2018, 411 patients were randomly assigned to ablation-based rhythm control (n=214) or rate control (n=197). The primary outcome occurred in 50 (23.4%) patients in the ablation-based rhythm-control group and 64 (32.5%) patients in the rate-control group (hazard ratio, 0.71 [95% CI, 0.49–1.03]; P =0.066). Left ventricular ejection fraction increased in the ablation-based group (10.1±1.2% versus 3.8±1.2%, P =0.017), 6-minute walk distance improved (44.9±9.1 m versus 27.5±9.7 m, P =0.025), and NT-proBNP demonstrated a decrease (mean change –77.1% versus –39.2%, P P =0.0036), as did the AF Effect on Quality of Life score (least-squares mean difference of 6.2 [95% CI, 1.7–10.7]; P =0.0005). Serious adverse events were observed in 50% of patients in both treatment groups. Conclusions: In patients with high-burden AF and HF, there was no statistical difference in all-cause mortality or HF events with ablation-based rhythm control versus rate control; however, there was a nonsignificant trend for improved outcomes with ablation-based rhythm control over rate control. Registration: URL: https://www.clinicaltrials.gov ; Unique identifier: NCT01420393.
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- 2022
29. Alterations of Sympathetic Dynamics after AF Ablation by Analysis SKNA Provides Prognostic Value for Recurrence
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Jien-Jiun Chen, Chen Lin, Yuan-Cheng Chuang, Shu-Fang Lee, Tse-Yu Lin, Chih-Chieh Yu, Chia-Ti Tsai, Min-Tsun Liao, Lian-Yu Lin, and Men-Tzung Lo
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
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30. ExCel: Super-resolution imaging of C. elegans with expansion microscopy
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Chih-Chieh Yu, Danielle M. Orozco Cosio, and Edward S. Boyden
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Microscopy, Fluorescence ,Animals ,Proteins ,RNA ,DNA ,Caenorhabditis elegans ,Article - Abstract
Studies of C. elegans will benefit from a powerful method for super-resolution imaging of proteins and mRNAs at any 3-D locations throughout the entire animal. Conventional methods of super-resolution imaging in C. elegans, such as STORM, PALM, SR-SIM and STED, are limited by imaging depths that are insufficient to map the entire depth of adult worms, and involve hardware that may not be accessible to all labs. We recently developed expansion of C. elegans (ExCel), a method for physically magnifying fixed whole animals of C. elegans with high isotropy, which provides effective resolutions finer than the diffraction limit, across the entire animal, on conventional confocal microscopes. In this chapter, we present a family of three detailed ExCel protocols. The standard ExCel protocol features simultaneous readout of diverse molecules (fluorescent proteins, RNA, DNA, and general anatomy), all at ~70 nm resolution (~3.5× linear expansion). The epitope-preserving ExCel protocol enables imaging of endogenous proteins with off-the-shelf antibodies, at a ~ 100 nm resolution (~2.8× linear expansion). The iterative ExCel protocol allows readout of fluorescent proteins at ~25 nm resolution (~20× linear expansion). The protocols described here comprise a versatile toolbox for super-resolution imaging of C. elegans.
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- 2022
31. The complete chloroplast genome of Androsace erecta (Primulaceae) and its phylogenetic implication
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Yao-Wu Xing, Chuan Peng, and Chih-Chieh Yu
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0106 biological sciences ,0301 basic medicine ,Phylogenetic tree ,biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Genome ,03 medical and health sciences ,Primulaceae ,030104 developmental biology ,Chloroplast DNA ,Genus ,Molecular phylogenetics ,Botany ,Genetics ,Androsace ,Molecular Biology ,Genome size - Abstract
With about 153 species, the genus Androsace (Primulaceae) is known for its horticultural and economic importance. In this study, we report the complete chloroplast genome of Androsace erecta Maximowicz, a morphologically distinct species of Sect. Orthocaulon native to the Western China. The plastome of A. erecta is highly conserved in genome size, structure, and content when compared to all previously published plastomes of the genus. The phylogenomic analysis strongly supported A. erecta as sister to a clade comprising species of Sections Aizoideia and Chamaejasme. Lastly, we selected the four most variable regions across the Androsace species plastomes (trnKUUU-rps16, trnSGCU-trnGUCC , psbE-petL, and infA-rps8), which were considered to be suitable candidate DNA barcodes for Androsace.
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- 2021
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32. Arrhythmogenic Right Ventricular Dysplasia: Clinical Characteristics and Identification of Novel Desmosome Gene Mutations
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Chih-Chieh Yu, Cheng-Han Yu, Chia-Hsiang Hsueh, Chi-Tung Yang, Jyh-Ming Juang, Juey-Jen Hwang, Jiunn-Lee Lin, and Ling-Ping Lai
- Subjects
arrhythmogenic right ventricular dysplasia ,desmosomes ,DNA mutational analysis ,genes ,Medicine (General) ,R5-920 - Abstract
Background/Purpose: Desmosome gene mutations have been reported in patients with arrhythmogenic right ventricular dysplasia (ARVD). However, there are hardly any genetic studies in Asians. We studied the clinical characteristics, cardiac manifestations and desmosome gene mutations in ARVD patients in Taiwan. Methods: Medical records of five ARVD patients were reviewed and genomic DNA was obtained from peripheral blood samples. Mutation screening in desmoplakin (DSP), plakophilin-2, desmoglein-2 (DSG2) and desmocollin-2 genes was performed using polymerase chain reaction and DNA sequencing techniques. Results: Among the five patients, three presented with palpitations followed by loss of consciousness, and the other two had palpitations or chest tightness without loss of consciousness. Electrocardiogram (ECG), magnetic resonance imaging and signal averaged ECG results were similar to those reported in Western countries. Mutations in the desmosome genes were identified in four of the five patients (three with a DSG2 mutation and one with a DSP mutation). Five gene mutations were noted in four patients and all mutations were novel (one patient had a DSG2 double mutation). The mutation types were missense in four and splicing mutation in one. Conclusion: Patients with ARVD in Taiwan had similar clinical and cardiac manifestations as reported in the Western literature. More than half of the patients had desmosome gene mutations.
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- 2008
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33. Smad4 loss synergizes with TGFα overexpression in promoting pancreatic metaplasia, PanIN development, and fibrosis.
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Dario Garcia-Carracedo, Chih-Chieh Yu, Nathan Akhavan, Stuart A Fine, Frank Schönleben, Naoki Maehara, Dillon C Karg, Chuangao Xie, Wanglong Qiu, Robert L Fine, Helen E Remotti, and Gloria H Su
- Subjects
Medicine ,Science - Abstract
While overexpression of TGFα has been reported in human pancreatic ductal adenocarcinoma (PDAC), mice with overexpressed TGFα develop premalignant pancreatic acinar-to-ductal metaplasia (ADM) but not PDAC. TGF-β signaling pathway is pivotal to the development of PDAC and tissue fibrosis. Here we sought to investigate the interplay between TGFα and TGF-β signaling in pancreatic tumorigenesis and fibrosis, namely via Smad4 inactivation.The MT-TGFα mouse was crossed with a new Smad4 conditional knock-out mouse (Smad4flox/flox;p48-Cre or S4) to generate Smad4flox/flox;MT-TGFα;p48-Cre (STP). After TGFα overexpression was induced with zinc sulfate water for eight months, the pancreata of the STP, MT-TGFα, and S4 mice were examined for tumor development and fibrotic responses. PanIN lesions and number of ducts were counted, and proliferation was measured by Ki67 immunohistochemistry (IHC). Qualitative analysis of fibrosis was analyzed by Trichrome Masson and Sirius Red staining, while vimentin was used for quantification. Expression analyses of fibrosis, pancreatitis, or desmoplasia associated markers (α-SMA, Shh, COX-2, Muc6, Col1a1, and Ctgf) were performed by IHC and/or qRT-PCR.Our STP mice exhibited advanced ADM, increased fibrosis, increased numbers of PanIN lesions, overexpression of chronic pancreatitis-related marker Muc6, and elevated expression of desmoplasia-associated marker Col1A1, compared to the MT-TGFα mice. The inactivation of Smad4 in the exocrine compartment was responsible for both the enhanced PanIN formation and fibrosis in the pancreas. The phenotype of the STP mice represents a transient state from ADMs to PanINs, closely mimicking the interface area seen in human chronic pancreatitis associated with PDAC.We have documented a novel mouse model, the STP mice, which displayed histologic presentations reminiscent to those of human chronic pancreatitis with signs of early tumorigenesis. The STP mice could be a suitable animal model for interrogating the transition of chronic pancreatitis to pancreatic cancer.
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- 2015
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34. Taxonomic synopsis of
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Yao-Ke, Li, Julian, Harber, Chuan, Peng, Zhi-Qiang, Du, Yao-Wu, Xing, and Chih-Chieh, Yu
- Abstract
Though
- Published
- 2021
35. Higher long-term visit-to-visit glycemic variability predicts new-onset atrial fibrillation in patients with diabetes mellitus
- Author
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Yen-Yun Yang, Chih-Chieh Yu, Shu-Lin Chuang, Lian-Yu Lin, and Jung-Chi Hsu
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Blood Glucose ,Male ,medicine.medical_specialty ,Time Factors ,Databases, Factual ,Endocrinology, Diabetes and Metabolism ,Taiwan ,030209 endocrinology & metabolism ,030204 cardiovascular system & hematology ,Risk Assessment ,03 medical and health sciences ,Diabetes mellitus ,0302 clinical medicine ,Predictive Value of Tests ,Risk Factors ,Internal medicine ,Diseases of the circulatory (Cardiovascular) system ,Humans ,Medicine ,Glycemic variability ,Original Investigation ,Retrospective Studies ,Glycemic ,Glycated Hemoglobin ,business.industry ,Proportional hazards model ,Incidence ,Hazard ratio ,Atrial fibrillation ,Middle Aged ,Prognosis ,medicine.disease ,Confidence interval ,Stroke ,Diabetes Mellitus, Type 2 ,Quartile ,Ischemic Attack, Transient ,RC666-701 ,Female ,Cardiology and Cardiovascular Medicine ,business ,Biomarkers ,Cohort study - Abstract
Background Atrial fibrillation (AF) is prevalent in patients with type 2 diabetes mellitus (T2DM). Glycemic variability (GV) is associated with risk of micro- and macrovascular diseases. However, whether the GV can increase the risk of AF remains unknown. Methods The cohort study used a database from National Taiwan University Hospital, a tertiary medical center in Taiwan. Between 2014 and 2019, a total of 27,246 adult patients with T2DM were enrolled for analysis. Each individual was assessed to determine the coefficients of variability of fasting glucose (FGCV) and HbA1c variability score (HVS). The GV parameters were categorized into quartiles. Multivariate Cox regression models were employed to estimate the relationship between the GV parameters and the risk of AF, transient ischemic accident (TIA)/ischemic stroke and mortality in patients with T2DM. Results The incidence rates of AF and TIA/ischemic stroke were 21.31 and 13.71 per 1000 person-year respectively. The medium follow-up period was 70.7 months. In Cox regression model with full adjustment, the highest quartile of FGCV was not associated with increased risk of AF [Hazard ratio (HR): 1.12, 95% confidence interval (CI) 0.96–1.29, p = 0.148] or TIA/ischemic stroke (HR: 1.04, 95% CI 0.83–1.31, p = 0.736), but was associated with increased risk of total mortality (HR: 1.33, 95% CI 1.12–1.58, p Conclusions Our data demonstrate that high GV is independently associated with the development of new-onset AF in patients with T2DM. The benefit of maintaining stable glycemic levels to improve clinical outcomes warrants further studies.
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- 2021
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36. Impact of recording length and other arrhythmias on atrial fibrillation detection from wrist photoplethysmogram using smartwatches
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Min-Tsun Liao, Chih-Chieh Yu, Lian-Yu Lin, Ke-Han Pan, Tsung-Hsien Tsai, Yu-Chun Wu, and Yen-Bin Liu
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Wrist Joint ,Electrocardiography ,Multidisciplinary ,Atrial Fibrillation ,Humans ,Wrist ,Photoplethysmography - Abstract
This study aimed to evaluate whether quantitative analysis of wrist photoplethysmography (PPG) could detect atrial fibrillation (AF). Continuous electrocardiograms recorded using an electrophysiology recording system and PPG obtained using a wrist-worn smartwatch were simultaneously collected from patients undergoing catheter ablation or electrical cardioversion. PPG features were extracted from 10, 25, 40, and 80 heartbeats of the split segments. Machine learning with a support vector machine and random forest approach were used to detect AF. A total of 116 patients were evaluated. We annotated > 117 h of PPG. A total of 6475 and 3957 segments of 25-beat pulse-to-pulse intervals (PPIs) were annotated as AF and sinus rhythm, respectively. The accuracy of the 25 PPIs yielded a test area under the receiver operating characteristic curve (AUC) of 0.9676, which was significantly better than the AUC for the 10 PPIs (0.9453; P
- Published
- 2021
37. Apnea-hypopnea index versus oxygen desaturation index for diagnosis of obstructive sleep apnea in patients with atrial fibrillation: six of one, half a dozen of the other?
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Chou-Han, Lin and Chih-Chieh, Yu
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- 2021
38. Poorer Exercise Accommodation of Regional Systolic Myocardial Motion after Spironolactone Treatment in Heart Failure Patients with Preserved Ejection Fraction and Ventricular Dyssynchrony
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Fu Chun Chiu, Jiunn Lee Lin, Chih Chieh Yu, Yi-Chih Wang, Juey-Jen Hwang, Ling Ping Lai, and Chia Ti Tsai
- Subjects
medicine.medical_specialty ,aldosterone antagonism ,dyssynchrony ,heart failure ,Article ,chemistry.chemical_compound ,Basal (phylogenetics) ,Internal medicine ,Medicine ,Ventricular dyssynchrony ,Aldosterone ,Ejection fraction ,exercise ,business.industry ,General Medicine ,medicine.disease ,chemistry ,Heart failure ,myocardial motion ,Spironolactone ,Cardiology ,Myocardial motion ,Early diastolic ,business - Abstract
Patients with heart failure and preserved ejection fraction (HFpEF) are known to have reduced systolic myocardial velocity (Sm) with impaired accommodation to exercise. We tested the impact of an aldosterone antagonist on Sm at rest and post-exercise. Forty-nine HFpEF patients (65 ± 11 years, 24 male) with HF signs/symptoms, mitral E/Ea (annular early diastolic velocity) >, 8, and left ventricular (LV) EF >, 50% were randomized to spironolactone (25 mg/day, 25 patients) or the Control. At baseline and 6 months, we analyzed Sm of basal LV segments at rest and after a 6 min treadmill exercise. At 6 months, post-exercise mean Sm in the spironolactone group became greater than that in the Control (9.2 ± 1.6 vs. 8.3 ± 1.0 cm/s, p = 0.021), mainly due to the increment of post-exercise % increase of lateral Sm (44 ± 30 vs. 30 ± 19% at baseline, p = 0.045). Further analyses showed the presence of systolic dyssynchrony (standard deviation of electromechanical delay of 6-basal LV segments >, 35 ms) was independently associated with a poorer response to spironolactone, defined as a post-exercise % increase of lateral Sm <, 50% (OR = 2.7, 95% CI = 1.8–4.2) and the increment of Ea <, 1.5 cm/s (OR = 1.5, 95% CI = 1.1–2.3). Spironolactone could improve exercise accommodation of regional systolic myocardial velocity for HFpEF patients. However, its benefits could be decreased in those with ventricular dyssynchrony. This suggested possible therapeutic impacts from underlying heterogeneity within HFpEF patients.
- Published
- 2021
39. Notes on the type specimen of Acanthocalyx delavayi (Caprifoliaceae) at Herbarium of the National Museum of Natural History in Paris (P)
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Chih-Chieh Yu, Qi-Yong Mu, and Yao-Wu Xing
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Herbarium ,biology ,Genus ,Botany ,Typification ,Type specimen ,Taxonomy (biology) ,Plant Science ,biology.organism_classification ,Acanthocalyx ,Eudicots ,Ecology, Evolution, Behavior and Systematics ,Acanthocalyx delavayi - Abstract
Acanthocalyx (DC.) Tiegh. (1909: 199) is a small genus in Caprifoliaceae Jussieu (1789: 210), endemic to the Chinese Hengduan Mountains and adjacent montane regions, yet represents the family’s most characteristic alpine herbaceous perennials in the region. With only three species recognized (A. alba, A. delavayi, A. nepalensis), the taxonomy of Acanthocalyx has not been fully disentangled, and this is particularly due to problem related to the typification of A. delavayi (Franch.) Cannon & Cannon (1984: 14).
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- 2020
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40. Prediction of atrial fibrillation recurrence before catheter ablation using an adaptive nonlinear and non-stationary surface ECG analysis
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Weihui Li, Wan Hsin Hsieh, Men Tzung Lo, Lian-Yu Lin, Xingran Cui, Chih Chieh Yu, Hung Chi Chang, Chung-Kang Peng, and Jiunn Lee Lin
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Statistics and Probability ,medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Hazard ratio ,Catheter ablation ,Atrial fibrillation ,Dominant frequency ,Condensed Matter Physics ,Ablation ,medicine.disease ,01 natural sciences ,010305 fluids & plasmas ,Surface ecg ,Internal medicine ,0103 physical sciences ,Cardiology ,medicine ,Sinus rhythm ,010306 general physics ,business ,Cycle length - Abstract
The recurrence rate of atrial fibrillation (AF) following catheter ablation is high. Successful non-recurrence prediction before ablation is financially and physically beneficial. Atrial fibrillation cycle length (AFCL) has been used for such predictions. The study explored a nonlinear and non-stationary signal analysis technique, ensemble empirical model decomposition (EEMD), to capture intrinsic AFCL pattern. Twenty-eight AF patients underwent regular catheter ablation protocols and follow-up treatments. Surface ECG were recorded before ablation procedures, and preprocessed with QRS-T cancellation method to extract intrinsic AF signals, which were then analyzed with EEMD to calculate AFCL adaptively. Conventional Fourier-based dominant frequency (DF) analysis was conducted for comparison. During 12 months follow-up, 17 patients maintained sinus rhythm while 11 patients had AF recurrence. Patients who maintained sinus rhythm had longer AFCL (152.2 (145.0, 157.6) ms) than those with AF recurrence (138.8 (135.0, 145.2) ms). Patients with AFCL >152.1 ms had no recurrence (Kaplan–Meier curve analysis, P=0.006, hazard ratio: 5.68). With AFCL as a predictor of AF non-recurrence at 12 months, the area under ROC curve is 0.80, while with DF analysis, the area is 0.66. EEMD-based intrinsic AFCL measured from surface ECG may serve as an effective non-invasive catheter ablation screening tool for AF non-recurrence.
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- 2019
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41. Apamin does not inhibit human cardiac Na+ current, L-type Ca2+ current or other major K+ currents.
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Chih-Chieh Yu, Tomohiko Ai, James N Weiss, and Peng-Sheng Chen
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Medicine ,Science - Abstract
Apamin is commonly used as a small-conductance Ca2+-activated K+ (SK) current inhibitor. However, the specificity of apamin in cardiac tissues remains unclear.To test the hypothesis that apamin does not inhibit any major cardiac ion currents.We studied human embryonic kidney (HEK) 293 cells that expressed human voltage-gated Na+, K+ and Ca2+ currents and isolated rabbit ventricular myocytes. Whole-cell patch clamp techniques were used to determine ionic current densities before and after apamin administration.Ca2+ currents (CACNA1c+CACNB2b) were not affected by apamin (500 nM) (data are presented as median [25th percentile;75th percentile] (from -16 [-20;-10] to -17 [-19;-13] pA/pF, P = NS), but were reduced by nifedipine to -1.6 [-3.2;-1.3] pA/pF (p = 0.008). Na+ currents (SCN5A) were not affected by apamin (from -261 [-282;-145] to -268 [-379;-132] pA/pF, P = NS), but were reduced by flecainide to -57 [-70;-47] pA/pF (p = 0.018). None of the major K+ currents (IKs, IKr, IK1 and Ito) were inhibited by 500 nM of apamin (KCNQ1+KCNE1, from 28 [20]; [37] to 23 [18]; [32] pA/pF; KCNH2+KCNE2, from 28 [24]; [30] to 27 [24]; [29] pA/pF; KCNJ2, from -46 [-48;-40] to -46 [-51;-35] pA/pF; KCND3, from 608 [505;748] to 606 [454;684]). Apamin did not inhibit the INa or ICaL in isolated rabbit ventricular myocytes (INa, from -67 [-75;-59] to -68 [-71;-59] pA/pF; ICaL, from -16 [-17;-14] to -14 [-15;-13] pA/pF, P = NS for both).Apamin does not inhibit human cardiac Na+ currents, L-type Ca2+ currents or other major K+ currents. These findings indicate that apamin is a specific SK current inhibitor in hearts as well as in other organs.
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- 2014
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42. Tetra-gel enables superior accuracy in combined super-resolution imaging and expansion microscopy
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Chih-Chieh Yu, Edward S. Boyden, Xiaowei Zhuang, Hsuan Lee, and Pallav Kosuri
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Materials science ,Science ,Polyacrylamide ,Acrylic Resins ,Molecular imaging ,Standard deviation ,Article ,chemistry.chemical_compound ,Microscopy ,DNA origami ,Super-resolution microscopy ,Multidisciplinary ,biology ,Optical Imaging ,DNA ,biology.organism_classification ,Polymerization ,chemistry ,Microscopy, Fluorescence ,Self-healing hydrogels ,Medicine ,Tetra ,Embedding ,Nucleic Acid Conformation ,Gels ,Biomedical engineering - Abstract
The accuracy of expansion microscopy (ExM) depends on the structural preservation of samples embedded in a hydrogel. However, it has been unknown to what extent gel embedding alters the molecular positions of individual labeled sites. Here, we quantified the accuracy of gel embedding by using stochastic optical reconstruction microscopy (STORM) to image DNA origami with well-defined structures. We found that embedding in hydrogels based on polyacrylamide, the most widely used chemistry in ExM, resulted in random displacements of labeled sites with a standard deviation of ~ 16 nm. In contrast, we found that embedding in tetra-gel, a hydrogel that does not depend on free-radical chain-growth polymerization, preserved labeled sites with a standard deviation of less than 5 nm. By combining tetra-gel ExM with STORM, we were able to resolve 11-nm structural features without the loss in accuracy seen with polyacrylamide gels. Our study thus provides direct measurements of the single-molecule distortions resulting from hydrogel embedding, and presents a way to improve super-resolution microscopy through combination with tetra-gel ExM.
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- 2021
43. Clinical characteristics of patients with congenital long QT syndrome and bigenic mutations
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Jimmy, Juang Jyh-Ming, Ching-Yu, Chen, Huei-Ming, Yeh, Wei-Yih, Chiu, Chih-Chieh, Yu, Yen-Bin, Liu, Chia-Ti, Tsai, Li-Wei, Lo, Sherri, Yeh Shih-Fan, and Ling-Ping, Lai
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- 2014
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44. Amiodarone inhibits apamin-sensitive potassium currents.
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Isik Turker, Chih-Chieh Yu, Po-Cheng Chang, Zhenhui Chen, Yoshiro Sohma, Shien-Fong Lin, Peng-Sheng Chen, and Tomohiko Ai
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Medicine ,Science - Abstract
Apamin sensitive potassium current (I KAS), carried by the type 2 small conductance Ca(2+)-activated potassium (SK2) channels, plays an important role in post-shock action potential duration (APD) shortening and recurrent spontaneous ventricular fibrillation (VF) in failing ventricles.To test the hypothesis that amiodarone inhibits I KAS in human embryonic kidney 293 (HEK-293) cells.We used the patch-clamp technique to study I KAS in HEK-293 cells transiently expressing human SK2 before and after amiodarone administration.Amiodarone inhibited IKAS in a dose-dependent manner (IC50, 2.67 ± 0.25 µM with 1 µM intrapipette Ca(2+)). Maximal inhibition was observed with 50 µM amiodarone which inhibited 85.6 ± 3.1% of IKAS induced with 1 µM intrapipette Ca(2+) (n = 3). IKAS inhibition by amiodarone was not voltage-dependent, but was Ca(2+)-dependent: 30 µM amiodarone inhibited 81.5±1.9% of I KAS induced with 1 µM Ca(2+) (n = 4), and 16.4±4.9% with 250 nM Ca(2+) (n = 5). Desethylamiodarone, a major metabolite of amiodarone, also exerts voltage-independent but Ca(2+) dependent inhibition of I KAS.Both amiodarone and desethylamiodarone inhibit I KAS at therapeutic concentrations. The inhibition is independent of time and voltage, but is dependent on the intracellular Ca(2+) concentration. SK2 current inhibition may in part underlie amiodarone's effects in preventing electrical storm in failing ventricles.
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- 2013
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45. B-PO05-041 DETECTION OF ATRIAL FIBRILLATION USING A WRIST PHOTOPLETHYSMOGRAM A PROSPECTIVE STUDY ON PATIENTS UNDERGOING CATHETER ABLATION OR ELECTRICAL CARDIOVERSION
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Min-Tsun Liao, Yen-Bin Liu, Lian-Yu Lin, and Chih Chieh Yu
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medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Atrial fibrillation ,Catheter ablation ,Wrist ,medicine.disease ,Electrical cardioversion ,medicine.anatomical_structure ,Physiology (medical) ,Photoplethysmogram ,Internal medicine ,medicine ,Cardiology ,Cardiology and Cardiovascular Medicine ,Prospective cohort study ,business - Published
- 2021
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46. Clinical manifestations and genetic characteristics in the Taiwan thoracic aortic aneurysm and dissection cohort - a prospective cohort study
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Po-Ting Yeh, Chih-Wei Yu, Pei-Lung Chen, Chih Chieh Yu, Kai-Chien Yang, De-Min Duan, and Hsin-Hui Chiu
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Aortic dissection ,medicine.medical_specialty ,medicine.diagnostic_test ,Aortic Aneurysm, Thoracic ,business.industry ,Hazard ratio ,Taiwan ,General Medicine ,medicine.disease ,Sudden death ,Thoracic aortic aneurysm ,Cohort Studies ,Aortic aneurysm ,Aortic Dissection ,Internal medicine ,Cohort ,medicine ,Humans ,Prospective Studies ,business ,Prospective cohort study ,Striae Distensae ,Genetic testing - Abstract
Background Thoracic aortic aneurysm and dissection (TAAD) is a devastating but treatable disease if detected early. The clinical manifestations and genetic characteristics underlying TAAD patients in Taiwan, however, remain unclear. Methods We consecutively recruited patients referred for TAAD screening and/or management at a tertiary medical center in Taiwan. All patients received a comprehensive survey of the clinical manifestations and a genetic testing with a 29-gene next-generation sequencing (NGS) panel. Results Patients (n = 107) were referred for different reasons, and could be grouped into 4 categories: known aortic aneurysm or dissection (AoAD) (n = 57), Marfanoid features (n = 36), having family members of suspected AoAD (n = 11), and ectopic lens (n = 3). AoAD were confirmed in 73 (68.2%) of the entire cohort. Among all the clinical manifestations, skin striae distensae was the only physical sign that showed significant association with AoAD (p = 0.007 after adjusted). Disease-causing genes/variants were identified in 46 patients (43.0%); FBN1 was the most prevalent disease-causing gene, followed by TGFBR1, TGFBR2 and FBN2. A positive genetic testing was not only an independent predictor of AoAD (hazard ratio (HR) 3.468, 95% confidence interval (CI) [1.541–7.807], p = 0.003), but also had a higher chance of dissection among the patients with known dilated aorta (HR 4.552, 95% CI [1.578–13.135], p = 0.005). Conclusion The presence of skin striae distensae may serve as a clinical cue for physicians to search for AoAD in subjects who are at risk. The NGS panel test not only helps confirm the diagnosis, but also stratify the risk of dissection among patients with dilated aorta.
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- 2020
47. Assessing the Cognitive Status of Drosophila by the Value-Based Feeding Decision
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Chun-Hong Chen, Chih-Chieh Yu, Yong Huei Hong, Po-Lin Chen, Yun-Ming Wang, Ferng Chang Chang, Tzai Wen Chiu, Tsai-Te Lu, Jian Chiuan Li, and Chih-Fei Kao
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Aging ,biology ,RC952-954.6 ,Cognition ,Disease ,biology.organism_classification ,Neuroprotection ,Article ,Nitric oxide ,chemistry.chemical_compound ,Ageing ,chemistry ,Geriatrics ,Mushroom bodies ,Cognitive status ,Premovement neuronal activity ,Geriatrics and Gerontology ,Cognitive decline ,Neuroscience ,Drosophila - Abstract
Decision-making is considered an important aspect of cognitive function. Impaired decision-making is a consequence of cognitive decline caused by various physiological conditions, such as aging and neurodegenerative diseases. Here we exploited the value-based feeding decision (VBFD) assay, which is a simple sensory–motor task, to determine the cognitive status of Drosophila. Our results indicated the deterioration of VBFD is notably correlated with aging and neurodegenerative disorders. Restriction of the mushroom body (MB) neuronal activity partly blunted the proper VBFD. Furthermore, using the Drosophila polyQ disease model, we demonstrated the impaired VBFD is ameliorated by the dinitrosyl iron complex (DNIC-1), a novel and steady nitric oxide (NO)-releasing compound. Therefore we propose that the VBFD assay provides a robust assessment of Drosophila cognition and can be used to characterize additional neuroprotective interventions.
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- 2020
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48. Social perception of young adults prolongs the lifespan of aged Drosophila
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Li-Chun Cho, Chih-Chieh Yu, and Chih-Fei Kao
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Aging ,Social perception ,media_common.quotation_subject ,fungi ,RC952-954.6 ,Sensory system ,Biology ,biology.organism_classification ,Article ,Developmental psychology ,Ageing ,Multiple factors ,Stimulus modality ,Geriatrics ,Perception ,Geriatrics and Gerontology ,Young adult ,Drosophila ,media_common ,Neuroscience - Abstract
Lifespan is modulated at distinct levels by multiple factors, including genetic backgrounds, the environment, behavior traits, metabolic status, and more interestingly, sensory perceptions. However, the effects of social perception between individuals living in the same space remain less clear. Here, we used the Drosophila model to study the influences of social perception on the lifespan of aged fruit flies. We found the lifespan of aged Drosophila is markedly prolonged after being co-housed with young adults of the same gender. Moreover, the changes of lifespan were affected by several experimental contexts: (1) the ratios of aged and young adults co-housed, (2) the chronological ages of two populations, and (3) the integrity of sensory modalities. Together, we hypothesize the chemical/physical stimuli derived from the interacting young adults are capable of interfering with the physiology and behavior of aged flies, ultimately leading to the alteration of lifespan.
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- 2020
49. Detection of Atrial Fibrillation Using a Wrist Photoplethysmogram: A Prospective Study on Patients Undergoing Catheter Ablation or Electrical Cardioversion (Preprint)
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Min-Tsun Liao, Chih-Chieh Yu, Lian-Yu Lin, Ke-Han Pan, Tsung-Hsien Tsai, Yu-Chun Wu, and Yen-Bin Liu
- Abstract
BACKGROUND Atrial fibrillation (AF) is associated with an increased risk of stroke, heart failure, and all-cause mortality. The electrocardiogram (ECG)–based strategy of screening for AF has some limitations. Photoplethysmography (PPG) is used in AF detection algorithms and allows passive and continuous monitoring by modern wearable devices. OBJECTIVE The objective of this study was to investigate the following: (1) whether quantitatively analyzing wrist PPG waveforms can clearly distinguish AF from sinus rhythm and (2) to determine the appropriate data length of the PPG for feature extraction to optimize the PPG analytics program for AF detection. METHODS Continuous waveforms of ECG through an electrophysiology recording system and PPG signals through a wrist–worn smartwatch were simultaneously collected from patients undergoing catheter ablation or electrical cardioversion for AF. The PPG features (temporal, spectral, or morphological) were extracted from 10, 25, 40, or 80 heartbeats of split segments. Machine learning with a support vector machine (SVM) approach was used for detecting AF. The receiver operating characteristic (ROC) curves were determined to evaluate the diagnostic accuracy. RESULTS A total of 116 patients were evaluated. The mean age was 59.6±11.4 years and 32.8% were women. We collected and annotated more than 117 hours of PPG waveforms. A total of 6478 and 3957 segments of 25-beat pulse-to-pulse interval (PPI) were annotated as AF and sinus rhythm, respectively. A total of eight features were extracted to distinguish AF, including the PPI standard deviation (SD), PPI root-mean-squared standard deviation (RMSSD), Shannon Entropy with bin = 10, 100, 1000 (SE10, SE100, SE1000), moving average of 3 PPI SD, moving SD of 3 PPI RMSSD, and moving SD of maximum FFT frequency in 3 PPI. The accuracy of all the eight PPG features extracted from the 25 PPI achieved a test AUC (area under the receiver operating characteristic curve) which was significantly better than that from the 10 PPI (the AUC was 0.9676 versus 0.9453, respectively; P CONCLUSIONS This study demonstrated that quantitatively analyzing PPG waveforms can clearly discriminate the signals of AF from those of sinus rhythm. The appropriate data length of the PPG to optimize the PPG analytics program was 25 heartbeats. CLINICALTRIAL N/A
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- 2020
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50. GSTM3 variant is a novel genetic modifier in Brugada syndrome, a disease with risk of sudden cardiac death
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Yen-Bin Liu, Tzu-Pin Lu, Hui-Chun Huang, Jyh-Ming Jimmy Juang, Li-Ting Ho, Ching-Yu Julius Chen, Juey-Jen Hwang, Liang-Chuan Lai, Shih-Fan Sherri Yeh, Anna Binda, Lian-Yu Lin, Wen-Jone Chen, Ilaria Rivolta, Eric Y. Chuang, Shyh-Jye Lee, Chih Chieh Yu, Ling Ping Lai, Charles Antzelevitch, Juang, J, Binda, A, Lee, S, Hwang, J, Chen, W, Liu, Y, Lin, L, Yu, C, Ho, L, Huang, H, Chen, C, Lu, T, Lai, L, Yeh, S, Chuang, E, Rivolta, I, and Antzelevitch, C
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0301 basic medicine ,Male ,Research paper ,Microarray ,lcsh:Medicine ,Disease ,Bioinformatics ,Sudden cardiac death ,Electrocardiography ,0302 clinical medicine ,Copy-number variation ,Exome sequencing ,Zebrafish ,Brugada syndrome ,Glutathione Transferase ,Sanger sequencing ,lcsh:R5-920 ,education.field_of_study ,Omherited cardiac arrhythmia, Genetics, Sudden Cardiac Deadth, Brugada Syndrome ,Inherited cardiac arrhythmia ,General Medicine ,Exons ,Phenotype ,030220 oncology & carcinogenesis ,symbols ,Female ,lcsh:Medicine (General) ,Adult ,DNA Copy Number Variations ,Genotype ,Population ,Taiwan ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,symbols.namesake ,Asian People ,Exome Sequencing ,medicine ,Genetics ,Animals ,Humans ,Genetic Predisposition to Disease ,education ,Genes, Modifier ,business.industry ,lcsh:R ,fungi ,Arrhythmias, Cardiac ,medicine.disease ,030104 developmental biology ,Death, Sudden, Cardiac ,HEK293 Cells ,Mutation ,business - Abstract
Background: Brugada syndrome (BrS) is a rare inherited disease causing sudden cardiac death (SCD). Copy number variants (CNVs) can contribute to disease susceptibility, but their role in Brugada syndrome (BrS) is unknown. We aimed to identify a CNV associated with BrS and elucidated its clinical implications. Methods: We enrolled 335 unrelated BrS patients from 2000 to 2018 in the Taiwanese population. Microarray and exome sequencing were used for discovery phase whereas Sanger sequencing was used for the validation phase. HEK cells and zebrafish were used to characterize the function of the CNV variant. Findings: A copy number deletion of GSTM3 (chr1:109737011-109737301, hg38) containing the eighth exon and the transcription stop codon was observed in 23.9% of BrS patients versus 0.8% of 15,829 controls in Taiwan Biobank (P < 0.001), and 0% in gnomAD. Co-segregation analysis showed that the co-segregation rate was 20%. Patch clamp experiments showed that in an oxidative stress environment, GSTM3 down-regulation leads to a significant decrease of cardiac sodium channel current amplitude. Ventricular arrhythmia incidence was significantly greater in gstm3 knockout zebrafish at baseline and after flecainide, but was reduced after quinidine, consistent with clinical observations. BrS patients carrying the GSTM3 deletion had higher rates of sudden cardiac arrest and syncope compared to those without (OR: 3.18 (1.77–5.74), P
- Published
- 2020
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