44 results on '"Chen, Yunshun"'
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2. Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures
3. Ehf controls mammary alveolar lineage differentiation and is a putative suppressor of breast tumorigenesis
4. Three-dimensional genome architecture coordinates key regulators of lineage specification in mammary epithelial cells
5. Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic neuronal cell death
6. Activation of stably silenced genes by recruitment of a synthetic de-methylating module
7. R code and downstream analysis objects for the scRNA-seq atlas of normal and tumorigenic human breast tissue
8. hoodscanR: profiling single-cell neighborhoods in spatial transcriptomics data
9. Spotlight on 10x Visium: a multi-sample protocol comparison of spatial technologies
10. edgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets
11. Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR
12. Spatial analysis of Hofbauer cell transcriptome, distribution and morphology in placentas exposed to Plasmodium falciparum
13. Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data
14. Single cell transcriptome atlas of mouse mammary epithelial cells across development
15. Mammary tumour cells remodel the bone marrow vascular microenvironment to support metastasis
16. Dividing out quantification uncertainty allows efficient assessment of differential transcript expression
17. Differential Expression Analysis of Complex RNA-seq Experiments Using edgeR
18. Identification of aberrant luminal progenitors and mTORC1 as a potential breast cancer prevention target in BRCA2mutation carriers
19. Regulation of germinal center responses and B-cell memory by the chromatin modifier MOZ
20. It’s DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR
21. In vivo genome‐editing screen identifies tumor suppressor genes that cooperate with Trp53 loss during mammary tumorigenesis
22. R code and downstream analysis objects for the scRNA-seq atlas of human breast spanning normal, preneoplastic and tumorigenic states
23. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
24. Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate
25. Additional file 1 of Single cell transcriptome atlas of mouse mammary epithelial cells across development
26. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
27. A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast.
28. Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR.
29. Intraclonal Plasticity in Mammary Tumors Revealed through Large-Scale Single-Cell Resolution 3D Imaging
30. Foxp1 Is Indispensable for Ductal Morphogenesis and Controls the Exit of Mammary Stem Cells from Quiescence
31. Mutant TRP53 exerts a target gene-selective dominant-negative effect to drive tumor development
32. Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR
33. Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR
34. Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling
35. c-Myb Regulates the T-Bet-Dependent Differentiation Program in B Cells to Coordinate Antibody Responses
36. Lung Basal Stem Cells Rapidly Repair DNA Damage Using the Error-Prone Nonhomologous End-Joining Pathway
37. Mutant p53 Enhances the Development and Sustained Growth of MYC-Driven Lymphoma and Exerts a Dominant Negative Effect Preferentially Deregulating Pathways for Metabolism and DNA Repair
38. From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
39. Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits
40. voom: precision weights unlock linear model analysis tools for RNA-seq read counts
41. Differential expression analysis of complex RNA-seq experiments
42. Lung Basal Stem Cells Rapidly Repair DNA Damage Using the Error-Prone Nonhomologous End-Joining Pathway
43. Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits
44. It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.
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